HHsearch alignment of GI: 254780260 and MMDB domain: 2j01_F_
>2j01_F (F:) 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=477.18 Aligned_cols=207 Identities=31% Similarity=0.448 Sum_probs=201.7
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
|++++|||++|++.++++++|++|+.|+|+|+||++|+||++|+|||||+||+|+||+|||+|||+||||||||+||+++
T Consensus 1 M~~~~v~~~~g~~~~~~~~~~~vF~~~~r~dii~~~v~~~~~~~R~gta~tk~r~ev~gsgrK~~~QKgtGrAR~Gs~~s 80 (210)
T 2j01_F 1 MKEVAVYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA 80 (210)
T ss_dssp CCCCCCCCCCSSSCCCCCCCSTTSSSCCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSCCCCCCSSCSSSSSSCCCCCTTS
T ss_pred CCCEEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98226874335368888801551565237999999999999746378777775340146676567543355335555401
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 10105774227787532000015999999999878765059589951433787781899998411355632786157751
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d 160 (207)
|+|+|||+||||+||+|+++||||++++|+++|||.|+++++|+|||++.++++|||++.++|+.+++.+..+++..+.|
T Consensus 81 P~~~gGg~a~gpkpr~~~~klnkK~~~lal~~aLs~k~~~~~l~vVd~~~~~~~kTk~~~~~l~~l~~~~~~liv~~~~~ 160 (210)
T 2j01_F 81 PIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGN 160 (210)
T ss_dssp TTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEECSC
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 21266456526420257888999999999999999974458725304433456662888888877512354543555512
Q ss_pred HHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf 78999962788956842402887571005908984999999999739
Q gi|254780260|r 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 (207)
Q Consensus 161 ~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk 207 (207)
+|+++|+||||+|+++++++||+||||++++||||++|++.|+|+|-
T Consensus 161 ~n~~~a~rNi~~v~v~~~~~lnv~dll~~~~ivit~~Al~~l~e~~~ 207 (210)
T 2j01_F 161 ELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG 207 (210)
T ss_dssp HHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf 68999984768967863388129998668949987899999999966