HHsearch alignment of GI: 254780260 and MMDB domain: 2j01_F_

>2j01_F (F:) 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=477.18  Aligned_cols=207  Identities=31%  Similarity=0.448  Sum_probs=201.7

Q ss_pred             CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r    1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV   80 (207)
Q Consensus         1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs   80 (207)
                      |++++|||++|++.++++++|++|+.|+|+|+||++|+||++|+|||||+||+|+||+|||+|||+||||||||+||+++
T Consensus         1 M~~~~v~~~~g~~~~~~~~~~~vF~~~~r~dii~~~v~~~~~~~R~gta~tk~r~ev~gsgrK~~~QKgtGrAR~Gs~~s   80 (210)
T 2j01_F            1 MKEVAVYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA   80 (210)
T ss_dssp             CCCCCCCCCCSSSCCCCCCCSTTSSSCCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSCCCCCCSSCSSSSSSCCCCCTTS
T ss_pred             CCCEEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98226874335368888801551565237999999999999746378777775340146676567543355335555401


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             10105774227787532000015999999999878765059589951433787781899998411355632786157751
Q gi|254780260|r   81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD  160 (207)
Q Consensus        81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d  160 (207)
                      |+|+|||+||||+||+|+++||||++++|+++|||.|+++++|+|||++.++++|||++.++|+.+++.+..+++..+.|
T Consensus        81 P~~~gGg~a~gpkpr~~~~klnkK~~~lal~~aLs~k~~~~~l~vVd~~~~~~~kTk~~~~~l~~l~~~~~~liv~~~~~  160 (210)
T 2j01_F           81 PIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGN  160 (210)
T ss_dssp             TTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEECSC
T ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             21266456526420257888999999999999999974458725304433456662888888877512354543555512


Q ss_pred             HHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf             78999962788956842402887571005908984999999999739
Q gi|254780260|r  161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK  207 (207)
Q Consensus       161 ~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk  207 (207)
                      +|+++|+||||+|+++++++||+||||++++||||++|++.|+|+|-
T Consensus       161 ~n~~~a~rNi~~v~v~~~~~lnv~dll~~~~ivit~~Al~~l~e~~~  207 (210)
T 2j01_F          161 ELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG  207 (210)
T ss_dssp             HHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf             68999984768967863388129998668949987899999999966