HHsearch alignment of GI: 254780260 and MMDB domain: 2zjr_C_
>2zjr_C (C:) 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}
Probab=100.00 E-value=0 Score=450.30 Aligned_cols=200 Identities=35% Similarity=0.550 Sum_probs=193.6
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
|++++|||++|++.++|+ ..|+|.|+||++|+||++++|||||+||+|+||+|||+|||+|||||+||+|++++
T Consensus 1 m~~~~v~~~~g~~~~~v~------l~~~r~dii~~~v~~~~~~~rq~ta~tk~r~ev~gsgrK~~rQKGtG~AR~G~~~s 74 (205)
T 2zjr_C 1 MAQINVIGQNGGRTIELP------LPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSV 74 (205)
T ss_dssp -CCCCCSSCCCCCCCCCC------TTTCCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCS
T ss_pred CCEEEEECCCCCEEEEEE------CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 973787558898788755------54236999999999999873246756763111258888866678887677666530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 10105774227787532000015999999999878765059589951433787781899998411355632786157751
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d 160 (207)
|+|+|||+||||+||+|+++||||++++|+++||+.++.++.|+|||++.++++|||++.++|+++++.+.++|+..+.|
T Consensus 75 p~~~gGg~a~gPkpr~~~~klnkK~r~lal~~aLs~k~~~~~l~Vvd~~~~~~~KTk~~~~~l~~~~~~~~~liv~~~~~ 154 (205)
T 2zjr_C 75 PTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDD 154 (205)
T ss_dssp TTSTTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEECCC
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 10157557526324227889999999999999999987448648732543457773888988877411344432343000
Q ss_pred HHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 7899996278895684240288757100590898499999999973
Q gi|254780260|r 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 161 ~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
+|+.+|+||||+|+++++++||+||||++++||||++|++.|+++|
T Consensus 155 ~n~~~a~rNl~~v~~~~~~~lnv~dll~~~~iVit~~Al~~l~~~l 200 (205)
T 2zjr_C 155 ENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEEEA 200 (205)
T ss_dssp HHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC--
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 7899997286894586648830999965896998799999999996