HHsearch alignment of GI: 254780260 and MMDB domain: 3i1n_E_20-116
>3i1n_E (E:20-116) 50S ribosomal protein L4; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_C 1p86_C 1vs8_E 2aw4_E 2awb_E 1vs6_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* 2qp1_E* ...
Probab=100.00 E-value=4.2e-40 Score=247.84 Aligned_cols=97 Identities=30% Similarity=0.359 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98766899999999999727886200136212148988764558875542365311101057742277875320000159
Q gi|254780260|r 25 ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 (207)
Q Consensus 25 ~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp~~rgGg~afgp~pr~~~~klnkK 104 (207)
++|+|+||||++|+||++|+|||||.||+|+||+|||+|||+|||||+||+|+.++|+|+|||+||||+|++|+++||||
T Consensus 1 g~~~r~dli~~~v~~~~~~~rq~~a~tktr~ev~GsgrK~~~qKgtG~AR~G~~~sp~~~gGg~a~gP~pr~~~~klnkK 80 (97)
T 3i1n_E 1 GRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKK 80 (97)
T ss_dssp SCCCCHHHHHHHHHHHHTTSCCCCCCCCCGGGSSSCCCCSSCSSSSSSCCCCCTTCTTSSSSCCTTCCCCCCCCCCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCEECCCEEECCCCCCCEEEEHHHH
T ss_conf 98767999999999999726577766532333057641242578887777657744433145156255435767645889
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999878765059
Q gi|254780260|r 105 VRSLALRHALSDKFCSN 121 (207)
Q Consensus 105 ~~~lAl~saLs~k~~~~ 121 (207)
++++|+++|||.+++++
T Consensus 81 ~r~lal~saLs~k~~~~ 97 (97)
T 3i1n_E 81 MYRGALKSILSELVRQD 97 (97)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99998999989998707