HHsearch results for GI: 254780260 and protein with PDBid: 1dmg_A
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=0 Score=466.77 Aligned_cols=205 Identities=34% Similarity=0.532 Sum_probs=194.2
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
++++|||++|+++|+||||++||+.|+|.||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|++++|
T Consensus 1 a~v~v~~~~g~~~g~ieL~~~vF~~~~r~dli~~~v~~~~a~~Rqg~~~tk~r~ev~gsgkK~~~QKGtGrAR~Gs~~sp 80 (225)
T 1dmg_A 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP 80 (225)
T ss_dssp CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred CEEEEECCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 92579748998811698499996998669999999999998541676466606522057888477899998887756487
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC--CEEEEEC--C
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556--3278615--7
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDG--C 157 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~--~~llv~~--~ 157 (207)
+|||||+||||+||+|+++||||++++|+++|||+++++++|+|||+|.++++|||++.++|+++++. +.|||+. +
T Consensus 81 ~~~gGg~a~gp~pr~~~~klnkK~r~lAl~~ALs~k~~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~Liv~~~~~ 160 (225)
T 1dmg_A 81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKE 160 (225)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEECCCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 03446646799773031368899999999999888752795799614545675689999999873867663145312433
Q ss_pred CCCHHHHHHHCCCCCCEEEEH---------------HCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 751789999627889568424---------------0288757100590898499999999973
Q gi|254780260|r 158 QLDRNFQLAARNIPNINLLPV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 158 ~~d~n~~~s~rNi~~v~v~~~---------------~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
+.++|+++|+||||+|+++++ +++||||||++++||||++||+.|||+|
T Consensus 161 ~~~~nl~~s~rNip~v~v~~~~~~~~~~~~~~~~~~~~lnvydlL~~~~lVit~~Al~~Lee~L 224 (225)
T 1dmg_A 161 EGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 224 (225)
T ss_dssp HHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEHHHHHHHHHHC
T ss_conf 1146789987278994487346532111234446657855999845891998599999999870