HHsearch results for GI: 254780260 and protein with PDBid: 1dmg_A

>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00  E-value=0  Score=466.77  Aligned_cols=205  Identities=34%  Similarity=0.532  Sum_probs=194.2

Q ss_pred             CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r    2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS   81 (207)
Q Consensus         2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp   81 (207)
                      ++++|||++|+++|+||||++||+.|+|.||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|++++|
T Consensus         1 a~v~v~~~~g~~~g~ieL~~~vF~~~~r~dli~~~v~~~~a~~Rqg~~~tk~r~ev~gsgkK~~~QKGtGrAR~Gs~~sp   80 (225)
T 1dmg_A            1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP   80 (225)
T ss_dssp             CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred             CEEEEECCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             92579748998811698499996998669999999999998541676466606522057888477899998887756487


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC--CEEEEEC--C
Q ss_conf             01057742277875320000159999999998787650595899514337877818999984113556--3278615--7
Q gi|254780260|r   82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDG--C  157 (207)
Q Consensus        82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~--~~llv~~--~  157 (207)
                      +|||||+||||+||+|+++||||++++|+++|||+++++++|+|||+|.++++|||++.++|+++++.  +.|||+.  +
T Consensus        81 ~~~gGg~a~gp~pr~~~~klnkK~r~lAl~~ALs~k~~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~Liv~~~~~  160 (225)
T 1dmg_A           81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKE  160 (225)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEECCCS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             03446646799773031368899999999999888752795799614545675689999999873867663145312433


Q ss_pred             CCCHHHHHHHCCCCCCEEEEH---------------HCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf             751789999627889568424---------------0288757100590898499999999973
Q gi|254780260|r  158 QLDRNFQLAARNIPNINLLPV---------------QGINVYDILRCSKLVLSKSAIEALEDRF  206 (207)
Q Consensus       158 ~~d~n~~~s~rNi~~v~v~~~---------------~~lnv~dll~~~~iVit~~Ai~~l~e~l  206 (207)
                      +.++|+++|+||||+|+++++               +++||||||++++||||++||+.|||+|
T Consensus       161 ~~~~nl~~s~rNip~v~v~~~~~~~~~~~~~~~~~~~~lnvydlL~~~~lVit~~Al~~Lee~L  224 (225)
T 1dmg_A          161 EGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL  224 (225)
T ss_dssp             HHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEHHHHHHHHHHC
T ss_conf             1146789987278994487346532111234446657855999845891998599999999870