HHsearch results for GI: 254780260 and protein with PDBid: 2ftc_D
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=0 Score=420.98 Aligned_cols=171 Identities=35% Similarity=0.522 Sum_probs=163.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 999999997278862001362121489887645588755423653111010577422778-7532000015999999999
Q gi|254780260|r 34 ARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 (207)
Q Consensus 34 ~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp~~rgGg~afgp~-pr~~~~klnkK~~~lAl~s 112 (207)
|++|+||++++|||||+||+||||+|||+|||+||||||||+||+|||+|||||+||||+ ||+|+++||||++++|+++
T Consensus 1 h~vv~~~~~~~R~gt~~tk~R~ev~gs~kKp~~QKGtG~AR~Gs~rsP~~~GGG~afgPk~pr~~~~klnKK~~~lAlr~ 80 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKV 80 (175)
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98899999853324545771643478999977769984247998879824178034489998416676169999999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---CCCCHHHHHHHCCCCCCEEEEHHCCCHHHHEEC
Q ss_conf 87876505958995143378778189999841135563278615---775178999962788956842402887571005
Q gi|254780260|r 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 (207)
Q Consensus 113 aLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~---~~~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~ 189 (207)
|||.++++++|+|||+|.++++|||.+..+++.+++...+++++ ++.|+|+++|+||||+|+++++++||+||||++
T Consensus 81 aLS~k~~~~~l~Vvd~~~~~~~kTK~~~~~l~~~~~~~~~l~v~~~~~~~~~nl~~s~rNi~~v~v~~~~~lNv~dlL~~ 160 (175)
T 2ftc_D 81 ALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKH 160 (175)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCC
T ss_conf 99998624986986023434578189999998630057403454153188899999973658833643587339999669
Q ss_pred CCEEEEHHHHHHHHH
Q ss_conf 908984999999999
Q gi|254780260|r 190 SKLVLSKSAIEALED 204 (207)
Q Consensus 190 ~~iVit~~Ai~~l~e 204 (207)
++||||++|++.|||
T Consensus 161 ~~lvit~~Al~~leE 175 (175)
T 2ftc_D 161 QTLVLTLPTVAFLED 175 (175)
T ss_pred CEEEEEHHHHHHHHC
T ss_conf 929986899888439