HHsearch results for GI: 254780260 and protein with PDBid: 2zjr_C
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F 1vow_F 1voy_F ...
Probab=100.00 E-value=0 Score=476.14 Aligned_cols=198 Identities=35% Similarity=0.589 Sum_probs=189.4
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
||+++||+.+|+++++++|+ ++|.||||++|+||++|+|||||+||+||||+|||+|||+||||||||+||.||
T Consensus 1 m~~~~v~~~~g~~~~~~~l~------e~~~~ll~~~v~~~~a~~R~gt~~tk~R~ev~g~gkKp~~QKGtGrAR~Gs~rs 74 (205)
T 2zjr_C 1 MAQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSV 74 (205)
T ss_dssp -CCCCCSSCCCCCCCCCCTT------TCCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCS
T ss_pred CCEEEEECCCCCEEEEEECC------CCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97478755889878876664------236999999999999861357655770003458999836779887578777868
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCE--EEEECCC
Q ss_conf 10105774227787532000015999999999878765059589951433787781899998411355632--7861577
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQ 158 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~--llv~~~~ 158 (207)
|+|||||+||||+||+|+++||||++++||++|||.|+++++|+|||+|.+++||||+|.++|+++++... ++++ +
T Consensus 75 P~~rgGg~~fgp~pr~~~~klnkK~r~lAlrsaLS~K~~~~~l~vvd~~~~~~~KTK~~~~~l~~l~~~~~~~vl~v--~ 152 (205)
T 2zjr_C 75 PTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLV--T 152 (205)
T ss_dssp TTSTTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEE--C
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEC--C
T ss_conf 81068814058767366766019999999999999997669759983254466675899999987163344441232--5
Q ss_pred CCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 517899996278895684240288757100590898499999999973
Q gi|254780260|r 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 159 ~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
.++|+++|+||||+|+++++++|||||||++++||||++|++.|+|+|
T Consensus 153 ~~en~~~s~RNi~~v~v~~~~~lNv~dlLk~~~lVit~~Al~~lee~l 200 (205)
T 2zjr_C 153 DDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEEEA 200 (205)
T ss_dssp CCHHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC--
T ss_pred CCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 536899998387996486538820999966997998799999999996