HHsearch results for GI: 254780260 and protein with PDBid: 2zkr_c
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=351.04 Aligned_cols=202 Identities=19% Similarity=0.158 Sum_probs=175.8
Q ss_pred CEEEEECCCCCEEEE-EEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCC-----CC----CCCHHHCCCCCCCCCCCCCC
Q ss_conf 622655468864556-860977939876689999999999972788620-----01----36212148988764558875
Q gi|254780260|r 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KS----KGRSEVAYTGSKMYVQKGTG 71 (207)
Q Consensus 2 m~~~v~~~~g~~~~~-i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta-----~t----k~r~ev~gs~kK~~~QKGtG 71 (207)
+.++|||.+|+.+|+ ++||+ ||+.|+|+||||++|++|++|+||+|+ .+ +.+|+++|++|+| +|+|+|
T Consensus 6 P~V~V~s~~G~~~G~~i~LP~-VF~~piR~DlV~~vv~~~~aN~RQ~yg~s~~AG~qtsAes~GtgRg~aR~P-R~kGgG 83 (421)
T 2zkr_c 6 PLISVYSEKGESSGKNVTLPA-VFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIP-RVRGGG 83 (421)
T ss_dssp -CCEEECTTSSEEEECSSCCG-GGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSC-CBTTTT
T ss_pred CEEEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCC
T ss_conf 734798278888475403857-858998789999999999985557567775557623146616878724355-224897
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCE--------------EEEECCCCCCCC
Q ss_conf 54236-531110105774227787-53200001599999999987876505958--------------995143378778
Q gi|254780260|r 72 RARHS-SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDI--------------MVIDNLVSKECK 135 (207)
Q Consensus 72 rAR~G-s~rsp~~rgGg~afgp~p-r~~~~klnkK~~~lAl~saLs~k~~~~~l--------------~Vvd~~~~~~~K 135 (207)
++|+| ++++|+|||||++|||+| |+|+++||+|++++|++||||+++.++.+ +||||+..+.+|
T Consensus 84 ~~R~G~~a~~p~~rGGr~~~ppk~~R~~~~KINkK~rRlAl~SALAA~a~~~~V~aRGH~i~~v~e~PlVVdd~~~~~~K 163 (421)
T 2zkr_c 84 THRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKK 163 (421)
T ss_dssp BCCCSTTCCTTSTTCCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGGGCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 75676665688247672417999745422011899999999999998525467775475214556577797045224545
Q ss_pred HHHHHHHHHHCCCC---------------------------CEEEEECCCCCHHHHHHHCCCCCCEEEEHHCCCHHHHEE
Q ss_conf 18999984113556---------------------------327861577517899996278895684240288757100
Q gi|254780260|r 136 TKYLVTRFRALDLS---------------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 (207)
Q Consensus 136 TK~~~~~L~~l~~~---------------------------~~llv~~~~~d~n~~~s~rNi~~v~v~~~~~lnv~dll~ 188 (207)
||+++++|+++++. +.+||+.. .|+++.+|+||||+|+++++++||+|||+.
T Consensus 164 TKeav~~Lk~lgl~~d~~r~~~s~~iraGkGK~R~Rr~~~rkg~LVV~~-~d~~l~kA~RNIPGVdv~~V~~LNvl~Lap 242 (421)
T 2zkr_c 164 TKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAFRKHPGITLLNVSKLNILKLAP 242 (421)
T ss_dssp HHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEES-SSSCCCHHHHTSTTCEEEEGGGCCHHHHSG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEC-CCCHHHHHHCCCCCCEEEECCCCCHHHCCC
T ss_conf 8999999998499167788752021234411330344557850699965-870599986289996686127655998277
Q ss_pred CCCE----EEEHHHHHHHHHHH
Q ss_conf 5908----98499999999973
Q gi|254780260|r 189 CSKL----VLSKSAIEALEDRF 206 (207)
Q Consensus 189 ~~~i----Vit~~Ai~~l~e~l 206 (207)
++++ |||++||+.|++.|
T Consensus 243 ggh~GR~~I~TesA~~kLd~iy 264 (421)
T 2zkr_c 243 GGHVGRFCIWTESAFRKLDDLY 264 (421)
T ss_dssp GGCCCCCEEEEHHHHHHHTTC-
T ss_pred CCCCCCEEEECHHHHHHHHHHH
T ss_conf 7866735998079999999986