HHsearch results for GI: 254780260 and protein with PDBid: 3ofq_E
>3ofq_E 50S ribosomal protein L4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=0 Score=481.95 Aligned_cols=200 Identities=29% Similarity=0.456 Sum_probs=193.1
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
|++++++..| +|+|+|.||+.|+|.||||++|+||++|+|||||+||+||||+|||+|||+||||||||+||+|||
T Consensus 1 m~~~~~~~~~----~i~l~~~vF~~~~~~~llh~~v~~~~a~~R~gt~~tK~R~eV~gsgkKp~~QKGtGrAR~Gs~rsP 76 (201)
T 3ofq_E 1 MELVLKDAQS----ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSP 76 (201)
T ss_dssp CCCCCSSSCC----CCCCCSSSSSCCCCHHHHGGGTTTTTTTSSCCCCCCCCTTTCCSCCCCCCCTTTSSSCCCCCTTCT
T ss_pred CEEEECCCCC----EEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 9147617778----489588995988669999999999998466566567711110377754236587867875578656
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556327861577517
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~ 161 (207)
+|||||+||||+||+|++++|||++++|+++|||.|+++++|+|||+|.++.||||++.++|+++++.+.|+|+ .+.|+
T Consensus 77 ~~rgGG~a~gp~pr~~~~klnkK~~~lal~~aLs~k~~~~~l~vvd~~~~~~~kTK~~~~~l~~l~~~~~LiV~-~~~~e 155 (201)
T 3ofq_E 77 IWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-GELDE 155 (201)
T ss_dssp TSSSCCCTTCCCSCCCCCCCCTTTTHHHHHHHHHHHHHTTCBCCCSSCCCCSSCTTTTTTTTTTTTCCSBCCBC-SSCCT
T ss_pred EECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 56698068899855423777779999999999999998448676100124689749999998760656157763-76427
Q ss_pred HHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 899996278895684240288757100590898499999999973
Q gi|254780260|r 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 162 n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
|+++|+||||+|++++++++||||||++++||||++|++.|||+|
T Consensus 156 nl~~S~RNi~~v~v~~~~~lNvyDlLk~~~lVit~~Al~~Lee~L 200 (201)
T 3ofq_E 156 NLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 200 (201)
T ss_dssp TTTTSSSSCSSCCCBCSTTCCHHHHTTSSBBCCCTTHHHHHHHSC
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 799998387996586448856999966894998789999999972