HHSEARCH alignment of GI: 254780260 and SCOP domain: d1vqoc1

Alignment

Probab=90.95  E-value=0.092  Score=27.75  Aligned_cols=48  Identities=19%  Similarity=0.075  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC-CCCCCCCCCCCCCC
Q ss_conf             6899999999999727886200136212148988-76455887554236
Q gi|254780260|r   29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGRARHS   76 (207)
Q Consensus        29 ~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~k-K~~~QKGtGrAR~G   76 (207)
                      ..-++++--...+......++..++++|++|+|+ ++|.|+++|++|..
T Consensus        32 h~~v~~~~an~Rqgt~~~k~~g~~t~a~~~g~g~~qk~tgrar~g~rrs   80 (246)
T d1vqoc1          32 GKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRV   80 (246)
T ss_dssp             HHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECSS
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999973636757775321422111357622355777645577657

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Archaeon Haloarcula marismortui [TaxId: 2238]