BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62] (207 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62] gi|254039937|gb|ACT56733.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT Sbjct: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS Sbjct: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG Sbjct: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILRCSKLVLSKSAIEALEDRFK Sbjct: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 >gi|315122817|ref|YP_004063306.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496219|gb|ADR52818.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 207 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/207 (86%), Positives = 189/207 (91%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIELSVR+LDG DKGVISVSE IFALKPQQGILARVLRWQSWR+ GCSKSKGRSE+AYT Sbjct: 1 MIELSVRDLDGADKGVISVSEGIFALKPQQGILARVLRWQSWRRSKGCSKSKGRSEIAYT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+KMY QKGTGRARHSSKS QFRGGGKAFGPVP G H LPKK+RSLALRHALSDKF S Sbjct: 61 GAKMYTQKGTGRARHSSKSAPQFRGGGKAFGPVPGNGAHDLPKKIRSLALRHALSDKFSS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+VID+LVSKE KTKYL RFRAL+LSNALIIDG QLDRNFQLAARNIPNINLL VQG Sbjct: 121 NDILVIDSLVSKELKTKYLAERFRALNLSNALIIDGVQLDRNFQLAARNIPNINLLSVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILRCSKL+LSKSA+EALE RFK Sbjct: 181 INVYDILRCSKLILSKSAVEALEGRFK 207 >gi|86357306|ref|YP_469198.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42] gi|109893627|sp|Q2K9L5|RL4_RHIEC RecName: Full=50S ribosomal protein L4 gi|86281408|gb|ABC90471.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42] gi|327191387|gb|EGE58413.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512] Length = 206 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|218460209|ref|ZP_03500300.1| 50S ribosomal protein L4 [Rhizobium etli Kim 5] Length = 206 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNL++ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLIAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|218672011|ref|ZP_03521680.1| 50S ribosomal protein L4 [Rhizobium etli GR56] Length = 206 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|190891356|ref|YP_001977898.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652] gi|226730712|sp|B3PWS2|RL4_RHIE6 RecName: Full=50S ribosomal protein L4 gi|190696635|gb|ACE90720.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652] Length = 206 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVATEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3] gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ +K+ G K+K R+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D LV+ E KTK L+ F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI Sbjct: 121 DLIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|116251541|ref|YP_767379.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841] gi|166199852|sp|Q1MIE0|RL4_RHIL3 RecName: Full=50S ribosomal protein L4 gi|115256189|emb|CAK07270.1| putative 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841] Length = 206 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/206 (61%), Positives = 162/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58] gi|46576833|sp|Q8UE19|RL4_AGRT5 RecName: Full=50S ribosomal protein L4 gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58] Length = 206 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ +K+ G K+K RSEV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D LV+ E KTK L+ F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|241204166|ref|YP_002975262.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858056|gb|ACS55723.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 206 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 162/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+E++ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|15965110|ref|NP_385463.1| 50S ribosomal protein L4 [Sinorhizobium meliloti 1021] gi|307314360|ref|ZP_07593966.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C] gi|307322072|ref|ZP_07601448.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83] gi|46577284|sp|Q92QG9|RL4_RHIME RecName: Full=50S ribosomal protein L4 gi|15074290|emb|CAC45936.1| Probable 50S ribosomal protein L4 [Sinorhizobium meliloti 1021] gi|306892254|gb|EFN23064.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83] gi|306899058|gb|EFN29700.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C] Length = 206 Score = 261 bits (666), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 124/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G KSKGR+EV+ TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKK+R+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 DI+VID+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 DIIVIDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|227821757|ref|YP_002825727.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234] gi|254803749|sp|C3MAY1|RL4_RHISN RecName: Full=50S ribosomal protein L4 gi|227340756|gb|ACP24974.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/206 (59%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G K+KGR+EVA TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+V+D+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 EIIVLDDLVANEAKTKALAGAFASLGLTNALIIGGAEIENNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|222148367|ref|YP_002549324.1| 50S ribosomal protein L4 [Agrobacterium vitis S4] gi|254803708|sp|B9JVN8|RL4_AGRVS RecName: Full=50S ribosomal protein L4 gi|221735355|gb|ACM36318.1| 50S ribosomal protein L4 [Agrobacterium vitis S4] Length = 206 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 161/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G D G +S+S+ IF L+P+Q I+AR++RWQ +K+ G K+K R+EV+ TG Sbjct: 1 MELNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS KF ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKFKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D LV+ + KTK V F AL L NAL+I G +LD NF+LAA NIPNI++LPVQGI Sbjct: 121 ELIIVDQLVAADAKTKAAVGVFEALGLKNALVIGGVELDVNFKLAAANIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|209548936|ref|YP_002280853.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226730713|sp|B5ZYT6|RL4_RHILW RecName: Full=50S ribosomal protein L4 gi|209534692|gb|ACI54627.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 206 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 161/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|150396208|ref|YP_001326675.1| 50S ribosomal protein L4 [Sinorhizobium medicae WSM419] gi|166199909|sp|A6U860|RL4_SINMW RecName: Full=50S ribosomal protein L4 gi|150027723|gb|ABR59840.1| ribosomal protein L4/L1e [Sinorhizobium medicae WSM419] Length = 206 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 121/206 (58%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G K+KGR+EV+ TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+++D+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 EIIIVDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|222085676|ref|YP_002544206.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84] gi|254803707|sp|B9JDS9|RL4_AGRRK RecName: Full=50S ribosomal protein L4 gi|221723124|gb|ACM26280.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84] Length = 206 Score = 256 bits (655), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 124/206 (60%), Positives = 159/206 (77%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +KR G K++GR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKKRQGTHKAQGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LR ALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++DNLV+ + KTK L F L L+NAL I G +LD NF+LAA NIPNI++LPVQGI Sbjct: 121 DVIILDNLVAADAKTKALAGAFETLGLTNALFIGGAELDSNFKLAAANIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|260468553|ref|ZP_05813720.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075] gi|259028709|gb|EEW30018.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 250 bits (638), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 122/206 (59%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +SE+IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ID L E KTK L+ F L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLSNALVIGGAELDQNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|294852569|ref|ZP_06793242.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026] gi|294821158|gb|EFG38157.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026] Length = 206 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDMLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|13470552|ref|NP_102121.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099] gi|46577286|sp|Q98N56|RL4_RHILO RecName: Full=50S ribosomal protein L4 gi|14021294|dbj|BAB47907.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099] Length = 206 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/206 (59%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +SE+IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPK VR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID L E KTK L+ F L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIVIDELKLTEAKTKALIANFATLGLSNALVIGGAELDKNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|319783321|ref|YP_004142797.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +S++IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ID L E KTK L+ F L L+NAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLTNALLIGGAELDKNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|110634029|ref|YP_674237.1| 50S ribosomal protein L4 [Mesorhizobium sp. BNC1] gi|123057912|sp|Q11HQ3|RL4_MESSB RecName: Full=50S ribosomal protein L4 gi|110285013|gb|ABG63072.1| LSU ribosomal protein L4P [Chelativorans sp. BNC1] Length = 206 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V L G+D G + VS++IF L P++ IL RV+RWQ +++ G K+KGR+E+A TG Sbjct: 1 MDLKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHSS QFRGGGKA GPVP H LPKKVR+L L+HALS K S Sbjct: 61 AKMYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D+L KE KTK LV F L ++NAL+I G ++D F+ AA NIPNI++LP+QGI Sbjct: 121 NLIIVDDLAIKEAKTKALVESFAKLGVTNALMIGGAEIDAGFKRAAANIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|239832121|ref|ZP_04680450.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301] gi|239824388|gb|EEQ95956.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301] Length = 206 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L + E KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|23502109|ref|NP_698236.1| 50S ribosomal protein L4 [Brucella suis 1330] gi|62290143|ref|YP_221936.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941] gi|82700066|ref|YP_414640.1| 50S ribosomal protein L4 [Brucella melitensis biovar Abortus 2308] gi|148559402|ref|YP_001259152.1| 50S ribosomal protein L4 [Brucella ovis ATCC 25840] gi|161619188|ref|YP_001593075.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365] gi|163843498|ref|YP_001627902.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445] gi|189024381|ref|YP_001935149.1| Ribosomal protein L4/L1e [Brucella abortus S19] gi|225627702|ref|ZP_03785739.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo] gi|225852729|ref|YP_002732962.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457] gi|237815651|ref|ZP_04594648.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A] gi|254689452|ref|ZP_05152706.1| 50S ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|254693937|ref|ZP_05155765.1| 50S ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|254697587|ref|ZP_05159415.1| 50S ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|254701973|ref|ZP_05163801.1| 50S ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|254704517|ref|ZP_05166345.1| 50S ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|254706587|ref|ZP_05168415.1| 50S ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|254710303|ref|ZP_05172114.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|254714300|ref|ZP_05176111.1| 50S ribosomal protein L4 [Brucella ceti M644/93/1] gi|254717737|ref|ZP_05179548.1| 50S ribosomal protein L4 [Brucella ceti M13/05/1] gi|254730481|ref|ZP_05189059.1| 50S ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|256031797|ref|ZP_05445411.1| 50S ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|256044882|ref|ZP_05447786.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|256061312|ref|ZP_05451462.1| 50S ribosomal protein L4 [Brucella neotomae 5K33] gi|256113786|ref|ZP_05454590.1| 50S ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|256257698|ref|ZP_05463234.1| 50S ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|256263781|ref|ZP_05466313.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9] gi|260168931|ref|ZP_05755742.1| 50S ribosomal protein L4 [Brucella sp. F5/99] gi|260546691|ref|ZP_05822430.1| ribosomal protein L4 [Brucella abortus NCTC 8038] gi|260565516|ref|ZP_05836000.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M] gi|260566239|ref|ZP_05836709.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40] gi|260754975|ref|ZP_05867323.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|260758191|ref|ZP_05870539.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|260762017|ref|ZP_05874360.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|260883984|ref|ZP_05895598.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|261214229|ref|ZP_05928510.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|261219580|ref|ZP_05933861.1| ribosomal protein L4 [Brucella ceti M13/05/1] gi|261314047|ref|ZP_05953244.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|261317866|ref|ZP_05957063.1| ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|261322075|ref|ZP_05961272.1| ribosomal protein L4 [Brucella ceti M644/93/1] gi|261325319|ref|ZP_05964516.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|261752541|ref|ZP_05996250.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|261755200|ref|ZP_05998909.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|261758424|ref|ZP_06002133.1| ribosomal protein L4 [Brucella sp. F5/99] gi|265988895|ref|ZP_06101452.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|265991309|ref|ZP_06103866.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|265995146|ref|ZP_06107703.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|297248538|ref|ZP_06932256.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196] gi|306840302|ref|ZP_07473074.1| 50S ribosomal protein L4 [Brucella sp. BO2] gi|306844136|ref|ZP_07476730.1| 50S ribosomal protein L4 [Brucella sp. BO1] gi|46577272|sp|Q8G077|RL4_BRUSU RecName: Full=50S ribosomal protein L4 gi|51338733|sp|Q8YHN9|RL4_BRUME RecName: Full=50S ribosomal protein L4 gi|75496682|sp|Q57CQ9|RL4_BRUAB RecName: Full=50S ribosomal protein L4 gi|109893579|sp|Q2YM04|RL4_BRUA2 RecName: Full=50S ribosomal protein L4 gi|166234640|sp|A5VR05|RL4_BRUO2 RecName: Full=50S ribosomal protein L4 gi|189029492|sp|A9M5P9|RL4_BRUC2 RecName: Full=50S ribosomal protein L4 gi|189029493|sp|B0CH31|RL4_BRUSI RecName: Full=50S ribosomal protein L4 gi|226730626|sp|B2S678|RL4_BRUA1 RecName: Full=50S ribosomal protein L4 gi|254803720|sp|C0RJK0|RL4_BRUMB RecName: Full=50S ribosomal protein L4 gi|23348069|gb|AAN30151.1| ribosomal protein L4 [Brucella suis 1330] gi|62196275|gb|AAX74575.1| RplD, ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941] gi|82616167|emb|CAJ11210.1| Ribosomal protein L4/L1e [Brucella melitensis biovar Abortus 2308] gi|82798166|gb|ABB91835.1| ribosomal protein L4 [Brucella abortus] gi|82798168|gb|ABB91836.1| ribosomal protein L4 [Brucella abortus] gi|82798170|gb|ABB91837.1| ribosomal protein L4 [Brucella abortus] gi|82798172|gb|ABB91838.1| ribosomal protein L4 [Brucella abortus] gi|82798174|gb|ABB91839.1| ribosomal protein L4 [Brucella abortus] gi|82798176|gb|ABB91840.1| ribosomal protein L4 [Brucella abortus] gi|82798178|gb|ABB91841.1| ribosomal protein L4 [Brucella abortus] gi|82798180|gb|ABB91842.1| ribosomal protein L4 [Brucella canis] gi|82798182|gb|ABB91843.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798184|gb|ABB91844.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798186|gb|ABB91845.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798188|gb|ABB91846.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|82798190|gb|ABB91847.1| ribosomal protein L4 [Brucella ovis] gi|82798192|gb|ABB91848.1| ribosomal protein L4 [Brucella suis 1330] gi|82798194|gb|ABB91849.1| ribosomal protein L4 [Brucella suis ATCC 23445] gi|82798196|gb|ABB91850.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|82798198|gb|ABB91851.1| ribosomal protein L4 [Brucella suis bv. 4 str. 40] gi|82798200|gb|ABB91852.1| ribosomal protein L4 [Brucella suis] gi|82798202|gb|ABB91853.1| ribosomal protein L4 [Brucella pinnipedialis] gi|82798204|gb|ABB91854.1| ribosomal protein L4 [Brucella ceti] gi|148370659|gb|ABQ60638.1| ribosomal protein L4 [Brucella ovis ATCC 25840] gi|161335999|gb|ABX62304.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365] gi|163674221|gb|ABY38332.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445] gi|189019953|gb|ACD72675.1| Ribosomal protein L4/L1e [Brucella abortus S19] gi|225617707|gb|EEH14752.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo] gi|225641094|gb|ACO01008.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457] gi|237788949|gb|EEP63160.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A] gi|260095741|gb|EEW79618.1| ribosomal protein L4 [Brucella abortus NCTC 8038] gi|260151584|gb|EEW86678.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M] gi|260155757|gb|EEW90837.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40] gi|260668509|gb|EEX55449.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|260672449|gb|EEX59270.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|260675083|gb|EEX61904.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|260873512|gb|EEX80581.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|260915836|gb|EEX82697.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|260924669|gb|EEX91237.1| ribosomal protein L4 [Brucella ceti M13/05/1] gi|261294765|gb|EEX98261.1| ribosomal protein L4 [Brucella ceti M644/93/1] gi|261297089|gb|EEY00586.1| ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|261301299|gb|EEY04796.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|261303073|gb|EEY06570.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|261738408|gb|EEY26404.1| ribosomal protein L4 [Brucella sp. F5/99] gi|261742294|gb|EEY30220.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|261744953|gb|EEY32879.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|262766259|gb|EEZ12048.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|263002093|gb|EEZ14668.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|263093909|gb|EEZ17843.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9] gi|264661092|gb|EEZ31353.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|297175707|gb|EFH35054.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196] gi|306275579|gb|EFM57311.1| 50S ribosomal protein L4 [Brucella sp. BO1] gi|306289701|gb|EFM60890.1| 50S ribosomal protein L4 [Brucella sp. BO2] gi|326409254|gb|ADZ66319.1| Ribosomal protein L4/L1e [Brucella melitensis M28] gi|326538962|gb|ADZ87177.1| 50S ribosomal protein L4 [Brucella melitensis M5-90] Length = 206 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|153009287|ref|YP_001370502.1| 50S ribosomal protein L4 [Ochrobactrum anthropi ATCC 49188] gi|166234695|sp|A6X0B9|RL4_OCHA4 RecName: Full=50S ribosomal protein L4 gi|151561175|gb|ABS14673.1| ribosomal protein L4/L1e [Ochrobactrum anthropi ATCC 49188] Length = 206 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L + E KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALVIGGAEIDVNFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|254719290|ref|ZP_05181101.1| 50S ribosomal protein L4 [Brucella sp. 83/13] gi|265984290|ref|ZP_06097025.1| ribosomal protein L4 [Brucella sp. 83/13] gi|306838042|ref|ZP_07470900.1| 50S ribosomal protein L4 [Brucella sp. NF 2653] gi|264662882|gb|EEZ33143.1| ribosomal protein L4 [Brucella sp. 83/13] gi|306406966|gb|EFM63187.1| 50S ribosomal protein L4 [Brucella sp. NF 2653] Length = 206 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ ++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLAHRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|110180290|gb|ABG54388.1| 23S ribosomal protein L4 [Brucella pinnipedialis] Length = 206 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRA H S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRASHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|256369656|ref|YP_003107166.1| 50S ribosomal protein L4 [Brucella microti CCM 4915] gi|255999818|gb|ACU48217.1| 50S ribosomal protein L4 [Brucella microti CCM 4915] Length = 206 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDADKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|110180274|gb|ABG54380.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180278|gb|ABG54382.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGT RARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|256159967|ref|ZP_05457685.1| 50S ribosomal protein L4 [Brucella ceti M490/95/1] gi|256255198|ref|ZP_05460734.1| 50S ribosomal protein L4 [Brucella ceti B1/94] gi|261222394|ref|ZP_05936675.1| ribosomal protein L4 [Brucella ceti B1/94] gi|265998359|ref|ZP_06110916.1| ribosomal protein L4 [Brucella ceti M490/95/1] gi|82798206|gb|ABB91855.1| ribosomal protein L4 [Brucella ceti] gi|260920978|gb|EEX87631.1| ribosomal protein L4 [Brucella ceti B1/94] gi|262552827|gb|EEZ08817.1| ribosomal protein L4 [Brucella ceti M490/95/1] Length = 206 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|110180276|gb|ABG54381.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180280|gb|ABG54383.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRA H S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRACHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|163760800|ref|ZP_02167879.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43] gi|162281844|gb|EDQ32136.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43] Length = 206 Score = 244 bits (622), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V L+G+ G IS+S+ IF L+P+Q ++ R++RWQ +K+ G K+ GRSE++ TG Sbjct: 1 MDLTVTTLEGKSAGKISLSDAIFGLEPRQDLIQRIVRWQLAKKQQGGHKTLGRSEISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARH + S QFRGGG+A GPV H LPKKVR+LALRHALS K ++ Sbjct: 61 AKMFKQKGTGRARHHAASAPQFRGGGRAHGPVVRSHAHDLPKKVRALALRHALSAKAQAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 DI+++D+L + E KTK L + L+NAL I G +LD+NF+LAA+NIPN+++LPVQGI Sbjct: 121 DIIIVDSLTAGEAKTKALTGSLDKMGLNNALFIGGAELDQNFRLAAKNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+ ALE+RFK Sbjct: 181 NVYDILRRGKLVLSKDAVAALEERFK 206 >gi|90417762|ref|ZP_01225674.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1] gi|90337434|gb|EAS51085.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++++LDG+D G ++++DIF L+P++ IL R++RWQ +++ G ++ GR+E+A TG Sbjct: 1 MDVTIKSLDGKDAGTATLADDIFGLEPREDILQRMVRWQLAKRQQGSHQTLGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K+Y QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K S Sbjct: 61 AKLYRQKGTGRARHGSARAPQFRGGGKAHGPVSRSHAHDLPKKVRALALRHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID L + E KTK +V F L L+NAL I G +LD NF +ARNIP +++LPVQGI Sbjct: 121 GIVVIDELKAAEGKTKAMVKTFADLGLTNALFIGGAELDANFTRSARNIPQMDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRQTLVLSKAAVEALEERFK 206 >gi|110180282|gb|ABG54384.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180286|gb|ABG54386.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/206 (57%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGT RARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 61 SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|49474403|ref|YP_032445.1| 50S ribosomal protein L4 [Bartonella quintana str. Toulouse] gi|81646966|sp|Q6FZC3|RL4_BARQU RecName: Full=50S ribosomal protein L4 gi|49239907|emb|CAF26305.1| 50s ribosomal protein l4 [Bartonella quintana str. Toulouse] Length = 206 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L +R LDG + G + VSE IF L P++ IL RV+RWQ R + G S+GRS+V+ TG Sbjct: 1 MDLVIRTLDGNEAGRLKVSESIFGLVPREDILQRVVRWQLARHQQGTHHSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R L LR ALS K +N Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D L KE KTK LV+ F L NAL++ G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIIVDELNVKEAKTKMLVSCFSKLGFKNALLVGGKEIDINFSRAASNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206 >gi|121602068|ref|YP_988968.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583] gi|121602137|ref|YP_988998.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583] gi|120614245|gb|ABM44846.1| ribosomal protein L4 [Bartonella bacilliformis KC583] gi|120614314|gb|ABM44915.1| ribosomal protein L4 [Bartonella bacilliformis KC583] Length = 206 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG+ G +SVSE +F L P++ IL RV+RWQ R++ G K +GRS+++ TG Sbjct: 1 MDLIIKTLDGKKTGELSVSEHVFGLVPREDILQRVVRWQLARRQKGTHKVQGRSDISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHSS QFRGGGKA GPV H LPKK R+L LR ALS KF +N Sbjct: 61 AKMYKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHGLPKKSRALGLRLALSAKFKAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID ++ KTK L T F L +NAL+I G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIVIDEFNLQDPKTKVLATNFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKKAVEALEERFK 206 >gi|163868649|ref|YP_001609858.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476] gi|189029491|sp|A9IW26|RL4_BART1 RecName: Full=50S ribosomal protein L4 gi|161018305|emb|CAK01863.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476] Length = 206 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/206 (57%), Positives = 154/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K + Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKAK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L K+ KTK LV+ F L +NAL+I G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIVVDELAVKDAKTKKLVSHFSKLGFNNALLIGGQEIDINFFRAASNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RF+ Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFR 206 >gi|240850834|ref|YP_002972234.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup] gi|240267957|gb|ACS51545.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup] Length = 206 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K + Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKAK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D L K+ KTK LV+ F L +NAL+I G ++D NF A NIPNI++LP+QGI Sbjct: 121 DLIIVDELTVKDAKTKMLVSHFSKLGFNNALLIGGKEIDINFFRAVSNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206 >gi|319899098|ref|YP_004159191.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73] gi|319403062|emb|CBI76617.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73] Length = 206 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE +F L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLMIKTLDGKEAGKVKVSESVFGLIPREDILQRVVRWQLTRRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHGLPKKVRALGLRLALSAKLKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 DLIVVDELNIRDAKTKVLNANFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKEAVEALEERFK 206 >gi|319408764|emb|CBI82421.1| 50S ribosomal protein L4 [Bartonella schoenbuchensis R1] Length = 206 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 118/206 (57%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+VA TG Sbjct: 1 MDLVIKTLDGNEAGKLKVSEHIFGLAPREDILQRVVRWQLARRQQGTHQSQGRSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV VH LPKK R+L L ALS K +N Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHVHILPKKSRALGLCLALSVKLKTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L ++ KTK L F L +NAL+I G +++ NF AA NIPNI++LPVQGI Sbjct: 121 DLIVVDELNVQDAKTKVLAKSFSKLGFNNALLIGGKEINMNFSRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR +KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRNKLVLSKAAVEALEERFK 206 >gi|319404424|emb|CBI78027.1| 50S ribosomal protein L4 [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 234 bits (597), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHNLPKKVRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 NLIIVDELSIRDAKTKMLNMNFSKLGFNNALLIGGKEVDVNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206 >gi|161511095|ref|NP_772039.2| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110] gi|46577249|sp|Q89J85|RL4_BRAJA RecName: Full=50S ribosomal protein L4 Length = 206 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+AR ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID + KTK L+ F L L+NALIIDG +L+ F AARNIPN+++LP+QGI Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|319407425|emb|CBI81076.1| 50S ribosomal protein L4 [Bartonella sp. 1-1C] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/206 (55%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLIIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHNLPKKIRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 NLIIVDELSIRDAKTKVLNMNFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206 >gi|49475793|ref|YP_033834.1| 50S ribosomal protein L4 [Bartonella henselae str. Houston-1] gi|81647792|sp|Q6G2W6|RL4_BARHE RecName: Full=50S ribosomal protein L4 gi|49238600|emb|CAF27841.1| 50S ribosomal protein l4 [Bartonella henselae str. Houston-1] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/206 (55%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE +F L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLLIKTLDGNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHTLPKKIRALGLRFALSAKLKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D K+ KT+ LV+ F L NAL+I G ++D NF A NIPNI++LP+QGI Sbjct: 121 DLIVVDEFNVKDAKTRMLVSCFSKLGFDNALLIGGNEVDLNFSRATSNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEVLEERFK 206 >gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2] gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G +++S++IF L+P++ I+ RV+ WQ +++ G K+KGR+EV TG Sbjct: 1 MELNVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+L LRHALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VIDN K+ KTK L+ F L L++ALI+DG +++ F AARNIP+I++LP+QGI Sbjct: 121 GLVVIDNAELKDAKTKALIAHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|27353674|dbj|BAC50664.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110] Length = 220 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+AR ++WQ +++ G K+KGR+E+ TG Sbjct: 15 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 74 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 75 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 134 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID + KTK L+ F L L+NALIIDG +L+ F AARNIPN+++LP+QGI Sbjct: 135 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 194 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 195 NVYDILRRQKLVLTKAAIDALEARFK 220 >gi|114704485|ref|ZP_01437393.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506] gi|114539270|gb|EAU42390.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++++ LDG D G +++SE IF L P+Q IL R++R+Q +++ G + GRS+VA TG Sbjct: 1 MDVTIKKLDGADAGTVTLSEAIFGLDPRQDILHRMVRYQLAKRQQGTHSTLGRSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHS+ QFRGGG A GP P LPKK+R+LAL+HALS K S Sbjct: 61 AKMYRQKGTGRARHSTAKAPQFRGGGIAHGPTPRSHAIDLPKKLRALALKHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID L + E KTK +V F L + NALII G +LD+NF A+RNI I++LPVQGI Sbjct: 121 GLIVIDELKADEGKTKSMVKSFAGLGIENALIIGGSELDQNFARASRNIAKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSKSA+EALE+RFK Sbjct: 181 NVYDILRRQTLVLSKSAVEALEERFK 206 >gi|319405897|emb|CBI79529.1| 50S ribosomal protein L4 [Bartonella sp. AR 15-3] Length = 206 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G S+GRS+V+ TG Sbjct: 1 MDLVVKTLDGKEAGKLKVSENIFGLTPREDILQRVIRWQLARRQKGTHPSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H+LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRCHAHSLPKKVRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 SLIVVDKLSIRDAKTKALNESFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRGKLVLSKEAVETLEERFK 206 >gi|209884814|ref|YP_002288671.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5] gi|226730700|sp|B6JET4|RL4_OLICO RecName: Full=50S ribosomal protein L4 gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5] Length = 206 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G +++S+ IF L+P+ I+ RV+ WQ +++ G K+KGR+E+A TG Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV + LPKKVR+L LRHALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN K+ KTK L+ F L L++ALI+DG +++ F AARNIP+I++LP+QGI Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|148256391|ref|YP_001240976.1| 50S ribosomal protein L4 [Bradyrhizobium sp. BTAi1] gi|166234638|sp|A5ELM6|RL4_BRASB RecName: Full=50S ribosomal protein L4 gi|146408564|gb|ABQ37070.1| LSU ribosomal protein L4P [Bradyrhizobium sp. BTAi1] Length = 206 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 148/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G+D G + +S+ IF L+P+ I+ R ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V++N + KTK L+ F L L+NALIIDG +L F AARNIPN+++LP+QGI Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|146340058|ref|YP_001205106.1| 50S ribosomal protein L4 [Bradyrhizobium sp. ORS278] gi|166234639|sp|A4YSJ3|RL4_BRASO RecName: Full=50S ribosomal protein L4 gi|146192864|emb|CAL76869.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS278] Length = 206 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 148/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+ I+ R ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V++N + KTK L+ F L L+NALIIDG +L F AARNIPN+++LP+QGI Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|92117099|ref|YP_576828.1| 50S ribosomal protein L4 [Nitrobacter hamburgensis X14] gi|122418094|sp|Q1QN29|RL4_NITHX RecName: Full=50S ribosomal protein L4 gi|91799993|gb|ABE62368.1| LSU ribosomal protein L4P [Nitrobacter hamburgensis X14] Length = 206 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 146/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G G + +S+ IF L+P++ ++ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM+ QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID+ E KTK LV F L L+NALI+DG + F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLTNALIVDGAAVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRRKLVLTKAAVDALEARFK 206 >gi|75675557|ref|YP_317978.1| 50S ribosomal protein L4 [Nitrobacter winogradskyi Nb-255] gi|109893613|sp|Q3SSW5|RL4_NITWN RecName: Full=50S ribosomal protein L4 gi|74420427|gb|ABA04626.1| LSU ribosomal protein L4P [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G + +S+ IF L+P++ ++ R + WQ + + G K+KGR+E+ TG Sbjct: 1 MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG ARH S QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID++ KE KTK L+ F +L L++ALIIDG Q+ F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLTSALIIDGAQVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|115525584|ref|YP_782495.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisA53] gi|122295409|sp|Q07KL9|RL4_RHOP5 RecName: Full=50S ribosomal protein L4 gi|115519531|gb|ABJ07515.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisA53] Length = 206 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/208 (54%), Positives = 150/208 (72%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G+D G + +S++IF L P+ I+ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH S+ V QFRGGG+AFGPV + HA LPKKVR++AL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPV--VRSHAIDLPKKVRAMALKHALSAKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++VID KTK LV F L L++ALIIDG +L+ F +AARNIPNI++LP+Q Sbjct: 119 DGGLIVIDQATLDSAKTKALVGHFAGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDILR KLVL+K+A++ALE RFK Sbjct: 179 GINVYDILRRQKLVLTKAAVDALEARFK 206 >gi|91977651|ref|YP_570310.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB5] gi|123762621|sp|Q134T0|RL4_RHOPS RecName: Full=50S ribosomal protein L4 gi|91684107|gb|ABE40409.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB5] Length = 206 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 151/208 (72%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIVQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH S+ V QFRGGG+AFGPV + HA LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPV--VRSHAIDLPKKVRALALRHALSAKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++VID + KTK LV F L L+NALIIDG +++ F AARNIPNI++LPVQ Sbjct: 119 GGGLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNNGFATAARNIPNIDVLPVQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDI+R KLVL+K+A++ALE RFK Sbjct: 179 GINVYDIVRRRKLVLTKAALDALEARFK 206 >gi|85715130|ref|ZP_01046114.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A] gi|85698045|gb|EAQ35918.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ L+G+ G + +S+ IF L+P++ ++ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELNITTLEGKAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTRKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG ARH S QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID++ KE KTK L+ F L L++ALI+DG Q+ F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSGLGLTSALIVDGAQVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|90424936|ref|YP_533306.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB18] gi|109893630|sp|Q211E9|RL4_RHOPB RecName: Full=50S ribosomal protein L4 gi|90106950|gb|ABD88987.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB18] Length = 206 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S++IF L P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI++ + KTK LV F L L++ALIIDG +L+ F +AARNIPNI++LP+QGI Sbjct: 121 GLIVIESATLEAAKTKALVGHFSGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|328543359|ref|YP_004303468.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1] gi|326413104|gb|ADZ70167.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 110/206 (53%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ LDG G I+VS++IF L+P+ ++ RV+RWQ +++ G K+KGRSEV+ T Sbjct: 1 MELEVKTLDGSAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKAKGRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGPV H LPKKVR+L L HALS K + Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVRDHGHDLPKKVRALGLAHALSTKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++++ + E KTK L +F L L +ALIIDG +LD NF LAARNIP +++LPVQGI Sbjct: 121 SLIIVEDAKAGEAKTKALKEKFGKLGLQSALIIDGSELDANFALAARNIPAVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ A+E+RFK Sbjct: 181 NVYDILRRNTLVLTKAAVSAIEERFK 206 >gi|217976766|ref|YP_002360913.1| 50S ribosomal protein L4 [Methylocella silvestris BL2] gi|254803745|sp|B8ELG2|RL4_METSB RecName: Full=50S ribosomal protein L4 gi|217502142|gb|ACK49551.1| ribosomal protein L4/L1e [Methylocella silvestris BL2] Length = 206 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/206 (53%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +L+G+ G I + + IF L+P+Q ++AR++R+Q ++R G K+KGR+E+A TG Sbjct: 1 MKIDITSLNGDSAGSIDLDDSIFGLEPRQDLIARMVRYQLAKRRAGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+LAL+HALS K Sbjct: 61 KKLYKQKGTGSARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALKHALSAKAQGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V + + + KTK L F L +ALIIDG ++++NF LAARNIP I++LPVQGI Sbjct: 121 GIIVWSDASATDAKTKALKASFAKAGLLSALIIDGAEVEQNFALAARNIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++AI+ALE RFK Sbjct: 181 NVYDILRREKLVLTRAAIDALEARFK 206 >gi|86749416|ref|YP_485912.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris HaA2] gi|109893629|sp|Q2IXQ9|RL4_RHOP2 RecName: Full=50S ribosomal protein L4 gi|86572444|gb|ABD07001.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris HaA2] Length = 206 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 115/208 (55%), Positives = 150/208 (72%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGQEAGSVQLSDAIFGLEPRNDIVQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH S+ V QFRGGG+AFGPV + HA LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPV--VRSHAIDLPKKVRALALRHALSAKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++VID + KTK LV F L L+NALIIDG +++ F AARNIPNI++LP+Q Sbjct: 119 GGGLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNTGFATAARNIPNIDVLPIQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDI+R KLVL+K+A++ALE RFK Sbjct: 179 GINVYDIVRRRKLVLTKAALDALEARFK 206 >gi|39936312|ref|NP_948588.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009] gi|192292036|ref|YP_001992641.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris TIE-1] gi|46577158|sp|P61068|RL4_RHOPA RecName: Full=50S ribosomal protein L4; AltName: Full=RRP-L4 gi|226730715|sp|B3QBX9|RL4_RHOPT RecName: Full=50S ribosomal protein L4 gi|39650167|emb|CAE28690.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009] gi|192285785|gb|ACF02166.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris TIE-1] Length = 206 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 115/208 (55%), Positives = 149/208 (71%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S++IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH S+ V QFRGGG+AFGPV + HA LPKKVR LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPV--VRSHAIDLPKKVRVLALRHALSAKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D + KTK LV F L L +ALIIDG +++ F AARNIPNI++LPVQ Sbjct: 119 GGGLIVLDKAELEAAKTKTLVGHFSGLGLESALIIDGAEVNNGFAAAARNIPNIDVLPVQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDILR KLVL+K+A++ALE RFK Sbjct: 179 GINVYDILRRKKLVLTKAAVDALEARFK 206 >gi|158424177|ref|YP_001525469.1| 50S ribosomal protein L4 [Azorhizobium caulinodans ORS 571] gi|158331066|dbj|BAF88551.1| ribosomal protein L4/L1e [Azorhizobium caulinodans ORS 571] Length = 207 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/207 (51%), Positives = 147/207 (71%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL+V+ LDG + G I +S+ IF L+P+ IL R++ WQ R++ G ++KGRSE+ T Sbjct: 1 MMELTVKTLDGAEAGSIQLSDAIFGLEPRADILHRMVTWQLARRQAGTHRTKGRSEINRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG ARH + S QFRGGG+AFGPV LPKKVR+LAL+HALS K + Sbjct: 61 SKKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D + KTK L RF L +++ L++DG Q+ NF LAARN+ ++++LPVQG Sbjct: 121 EQIIVLDAATLTDAKTKALKERFEKLGIASVLVVDGEQVATNFALAARNLASVDVLPVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILR LVL+++A++ALE RFK Sbjct: 181 INVYDILRRDTLVLTRAAVDALEARFK 207 >gi|316933528|ref|YP_004108510.1| 50S ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1] gi|315601242|gb|ADU43777.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1] Length = 206 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/208 (54%), Positives = 148/208 (71%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G + G + +S++IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGNEAGSVQLSDEIFGLEPRTDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH S+ V QFRGGG+AFGPV + HA LPKKVR LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPV--VRSHAIDLPKKVRVLALRHALSAKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D + KTK LV F L L +ALI+DG +++ F AARNIPNI++LP+Q Sbjct: 119 GGGLIVLDKAELEAAKTKTLVGHFSGLGLESALIVDGAEVNTGFAAAARNIPNIDVLPIQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDILR KLVL+K+A++ALE RFK Sbjct: 179 GINVYDILRRKKLVLTKAAVDALEARFK 206 >gi|170738702|ref|YP_001767357.1| 50S ribosomal protein L4 [Methylobacterium sp. 4-46] gi|226730694|sp|B0UHW8|RL4_METS4 RecName: Full=50S ribosomal protein L4 gi|168192976|gb|ACA14923.1| ribosomal protein L4/L1e [Methylobacterium sp. 4-46] Length = 206 Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 110/206 (53%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + LDG + G + V+E IF L+P+ +L R +RWQ +++ G K K RSE++ T Sbjct: 1 MKFEITTLDGGEAGSVEVNEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG +AFGPV H LPKKVR+LALRHALS K + Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKARAA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L RF AL SNALII G ++D NF AARN+P+I++LPVQGI Sbjct: 121 SLVVVDDVRLEDGKTKALKDRFGALGWSNALIIGGAEVDENFGRAARNLPSIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE RFK Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206 >gi|170748637|ref|YP_001754897.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831] gi|226730692|sp|B1LWS7|RL4_METRJ RecName: Full=50S ribosomal protein L4 gi|170655159|gb|ACB24214.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831] Length = 206 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 108/206 (52%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG G + ++E+IF L+P+ +L R++RWQ ++R G + RS+V T Sbjct: 1 MKLDIKTLDGAGAGSVELNEEIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LALRHALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSSKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L+ RF + LSNALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKIEDHKTKGLIERFGKMGLSNALIIGGAEVDVNFGRAARAIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTKAAVDALEERFK 206 >gi|312115688|ref|YP_004013284.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100] gi|311220817|gb|ADP72185.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD + G + + + +FAL+P+ IL R++R+Q +++ G K+K RSEV Sbjct: 1 MKAEVITLDASNAGSVELDDAVFALEPRTDILQRMVRYQLSKRQAGTHKAKARSEVNGPN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG+ARH + QFRGGG+ GPVP H LPKKVR+LAL+HALS K S+ Sbjct: 61 KKIYKQKGTGQARHGNDKPPQFRGGGRTAGPVPRSHAHDLPKKVRALALKHALSVKAKSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D E KT L +F L LSNALIIDG L NF LAARNIPN+++LPVQGI Sbjct: 121 ALVVLDKAEVTEAKTAQLRGKFAGLGLSNALIIDGAVLQDNFALAARNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A+EALE+RFK Sbjct: 181 NVYDILRREKLVLTRAALEALEERFK 206 >gi|154245624|ref|YP_001416582.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2] gi|226731446|sp|A7IFY2|RL4_XANP2 RecName: Full=50S ribosomal protein L4 gi|154159709|gb|ABS66925.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2] Length = 206 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 108/208 (51%), Positives = 150/208 (72%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V+ LDG + G +++S++IF L+P+ IL R + WQ R++ G ++KGRSE+ T Sbjct: 1 MEITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 KMY QKGTG ARH + S QFRGGG+AFGPV + HA LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGGRAFGPV--VRSHAIDLPKKVRALALKHALSSKAK 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+D + + KTK L F L L + LI+DG Q+++N LAARN+P +++LP+Q Sbjct: 119 AAQIIVLDKVSLDDPKTKALKEHFAKLGLESVLIVDGAQVEQNVALAARNLPYVDVLPIQ 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 GINVYDILR LVL+K+A++ALE RFK Sbjct: 179 GINVYDILRRDTLVLTKAAVDALEARFK 206 >gi|304391454|ref|ZP_07373396.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130] gi|303295683|gb|EFL90041.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130] Length = 206 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V +DG G +S+S+ +F L+P+Q I+ R++R+Q + R G + +GRS+V TG Sbjct: 1 MELDVTKMDGSKSGKVSLSDTVFGLEPRQDIIQRMVRYQLAKARQGTHQVQGRSDVDRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +MY QKGTG ARH S++ QFRGGGKA GP H L KK R+LALRHALS K + Sbjct: 61 KRMYRQKGTGGARHHSQAAPQFRGGGKAHGPQSRDHSHDLTKKFRALALRHALSAKAQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L +K+ KT L L NAL+I G +LD NF+LAA+NIP+I++LPVQGI Sbjct: 121 TLVVVDDLAAKDPKTAALRGNLGKLGFENALMIGGSELDNNFKLAAQNIPHIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R + LVLSK+A++ALE+RFK Sbjct: 181 NVYDIIRRNTLVLSKAAVDALEERFK 206 >gi|220921900|ref|YP_002497201.1| 50S ribosomal protein L4 [Methylobacterium nodulans ORS 2060] gi|254803744|sp|B8IS86|RL4_METNO RecName: Full=50S ribosomal protein L4 gi|219946506|gb|ACL56898.1| ribosomal protein L4/L1e [Methylobacterium nodulans ORS 2060] Length = 206 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + LDG D G + + E IF L+P+ +L R +RWQ +++ G K K RSE++ T Sbjct: 1 MKFEITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG +AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKAKDA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L F L LSNALII G ++D NF AARN+P+I++LPVQGI Sbjct: 121 SLIVVDDVRLEDGKTKALKECFGKLGLSNALIIGGTEVDENFGRAARNLPSIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE RFK Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206 >gi|298291439|ref|YP_003693378.1| ribosomal protein L4/L1e [Starkeya novella DSM 506] gi|296927950|gb|ADH88759.1| ribosomal protein L4/L1e [Starkeya novella DSM 506] Length = 206 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 108/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ LDG D G +++S++IF L+P+Q IL R++ WQ R++ G ++ RSEV T Sbjct: 1 MELAVKKLDGTDAGSVTLSDEIFGLEPRQDILHRMVVWQLARRQAGTHQTLSRSEVNRTK 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG KAF PV LPKKVR+LAL+HALS K Sbjct: 61 RKMYKQKGTGGARHGAASAPQFRGGAKAFAPVQHSHAIDLPKKVRALALKHALSSKAKDQ 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+D+ E KTK L R L LSN L++ G ++D NF LA+RN+ ++++LPVQGI Sbjct: 121 QIVVLDDATLAEPKTKLLKERLAGLGLSNVLVVSGAEVDANFGLASRNVGHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQTLVLTKAAVDALEARFK 206 >gi|300022542|ref|YP_003755153.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888] gi|299524363|gb|ADJ22832.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 143/206 (69%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V NLD G I ++++IF L+ + ++ R++R+Q+ ++ G ++ RSEVA TG Sbjct: 1 MKAEVTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM QKGTG ARH KS QFRGGGKAFGP P LPKKVR+LALRHALS K + Sbjct: 61 KKMTKQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+VID S E KT L +F L L NALIIDG +L+ F AARNIPNI++LPVQGI Sbjct: 121 EIVVIDKATS-EGKTGALKAQFAKLSLDNALIIDGAELEPTFARAARNIPNIDVLPVQGI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A+ ALE RFK Sbjct: 180 NVYDILRRRKLVLTRAAVAALEARFK 205 >gi|182678338|ref|YP_001832484.1| 50S ribosomal protein L4 [Beijerinckia indica subsp. indica ATCC 9039] gi|226730620|sp|B2IK63|RL4_BEII9 RecName: Full=50S ribosomal protein L4 gi|182634221|gb|ACB94995.1| ribosomal protein L4/L1e [Beijerinckia indica subsp. indica ATCC 9039] Length = 206 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +++GE G I + + IF L+P+ ++AR++R+Q ++R G +S GR+++ TG Sbjct: 1 MKIDITSVNGETAGSIDLDDAIFGLEPRVDLIARMIRYQLAKRRAGTHQSLGRADIHRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S QFRGGGKAFGPV H LPKK+R+LAL+HALS K Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGKAFGPVARSHEHDLPKKIRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ ++ E KTK L F + L+NALIIDG +L+ NF LAARNIP I++LPVQGI Sbjct: 121 GIIIWNDAKIPEAKTKGLKANFEKIGLTNALIIDGAELETNFSLAARNIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+ +AI ALE RFK Sbjct: 181 NVYDIVRRDKLVLTTAAINALEARFK 206 >gi|46205275|ref|ZP_00048760.2| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum MS-1] Length = 206 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E IF L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSVELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSTKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|188581376|ref|YP_001924821.1| 50S ribosomal protein L4 [Methylobacterium populi BJ001] gi|226730691|sp|B1ZLK5|RL4_METPB RecName: Full=50S ribosomal protein L4 gi|179344874|gb|ACB80286.1| ribosomal protein L4/L1e [Methylobacterium populi BJ001] Length = 206 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E IF L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSLELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSSKAKTS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|163851586|ref|YP_001639629.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1] gi|218530395|ref|YP_002421211.1| 50S ribosomal protein L4 [Methylobacterium chloromethanicum CM4] gi|240138754|ref|YP_002963226.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens AM1] gi|254561354|ref|YP_003068449.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens DM4] gi|226730686|sp|A9W4Q2|RL4_METEP RecName: Full=50S ribosomal protein L4 gi|254803743|sp|B7L0R2|RL4_METC4 RecName: Full=50S ribosomal protein L4 gi|163663191|gb|ABY30558.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1] gi|218522698|gb|ACK83283.1| ribosomal protein L4/L1e [Methylobacterium chloromethanicum CM4] gi|240008723|gb|ACS39949.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens AM1] gi|254268632|emb|CAX24591.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens DM4] Length = 206 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 105/206 (50%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E I+ L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSVELNEAIYGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDNHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|118591183|ref|ZP_01548582.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614] gi|118436259|gb|EAV42901.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614] Length = 206 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L+P+ ++ RV+RWQ +++ G K+ GRSEV+ T Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKALGRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH +K QFRGGGKAFGP+ H LPKKVR+L L+HALS K ++ Sbjct: 61 KKFVRQKGSGGARHGNKKAPQFRGGGKAFGPIVRDHSHDLPKKVRALGLKHALSAKAMTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+++ + E KTK L + L L++ALIIDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SIVVVEDAKAAEAKTKALKAQLSKLGLTSALIIDGAEVDANFALASRNIPHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ ALE+R K Sbjct: 181 NVYDILRANTLVLTKAAVSALEERLK 206 >gi|254502843|ref|ZP_05114994.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11] gi|222438914|gb|EEE45593.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11] Length = 206 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L P+ ++ RV+RWQ +++ G K+ GRSEV + Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLDPRTDLIHRVVRWQLAKRQAGTHKTLGRSEVTGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH +K QFRGGG+AFGPV H LPKKVR L L+HALS K ++ Sbjct: 61 KKFVRQKGSGGARHGNKKAPQFRGGGRAFGPVVRDHGHDLPKKVRVLGLKHALSAKAKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+++ + E KTK L ++ L L++AL+IDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SIVVVEDAKAAEAKTKALKSQLNKLGLTSALVIDGAEVDNNFALASRNIPHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ ALE+RFK Sbjct: 181 NVYDILRANTLVLTKAAVSALEERFK 206 >gi|110180284|gb|ABG54385.1| 23S ribosomal protein L4 [Brucella ceti] Length = 188 Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 18/206 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGR------- 53 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 ARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 54 -----------ARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 102 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 103 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 162 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 163 NVYDILRRGKLVLSKAAVEALEERFK 188 >gi|296447531|ref|ZP_06889453.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b] gi|296254919|gb|EFH02024.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b] Length = 206 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 142/206 (68%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V + DG++ G I ++++IF L+P+ ++ R++RWQ ++R G K R+++A TG Sbjct: 1 MQIGVTSYDGQEAGSIELADEIFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QF GGG+AFGPV H LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSRRVPQFIGGGRAFGPVVRSHEHDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V +N KTK L F L++ALIIDG + NF LAARN+P I++LPV G+ Sbjct: 121 AIIVWENASLDAPKTKMLKAGFDKTGLTSALIIDGAEPQVNFALAARNLPKIDVLPVTGV 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE R K Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARLK 206 >gi|254470116|ref|ZP_05083520.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062] gi|211960427|gb|EEA95623.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062] Length = 205 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 145/205 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L G+ G I+VS++IF L+P+ ++ RV+RWQ +++ G KS GRSEV T Sbjct: 1 MELEVKTLGGKAAGSITVSDEIFGLEPRIDLIQRVVRWQLAKRQAGTHKSLGRSEVNGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGPV H LPKKVR+L L+HALS K S Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVREHAHDLPKKVRALGLKHALSAKAASG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ ++++ + E KTK L + +L L++AL +DG ++D NF LA RNIP +++LPVQGI Sbjct: 121 NLYIVEDAKAAEAKTKALKEQLGSLGLTSALFVDGAEVDANFGLATRNIPLVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR LVL+K+A+ ALE+RF Sbjct: 181 NVYDILRRDTLVLTKAAVAALEERF 205 >gi|323136087|ref|ZP_08071170.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242] gi|322399178|gb|EFY01697.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242] Length = 206 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 102/206 (49%), Positives = 137/206 (66%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V + DG+ G I +S+D+F L+P+ ++ R++RWQ ++R G K R+++A TG Sbjct: 1 MKIDVTSFDGQAAGSIELSDDVFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S QFRGGG+AFGP H LPKKVR LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSGRAPQFRGGGRAFGPQVRSHEHDLPKKVRQLALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V + E KTK L F L+NA+II G NF LAARNIP I++LPV+G+ Sbjct: 121 GIIVWEKAELAEPKTKILAGGFAKSGLNNAIIIVGGAPQANFALAARNIPQIDVLPVEGV 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+++A++ALE R K Sbjct: 181 NVYDIIRREKLVLTRAAVDALEARLK 206 >gi|254418759|ref|ZP_05032483.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3] gi|196184936|gb|EDX79912.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3] Length = 212 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LSV LDG+ G + +S+ +F + +G ILAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSVIQLDGKAAGDVELSDAVFGISDIRGDILARTVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGPV +LPKK+R+LALRHALS K S Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGFSLPKKIRALALRHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D + KE KT L L + ALII G ++D NF LAARNIP+I++LP G Sbjct: 121 GDLIVVDTVSVKEAKTASLRETLGKLGWTKALIIAGPEVDTNFGLAARNIPHIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+K+AIEA+E RF Sbjct: 181 LNVYDILRADKLVLTKAAIEAIEARF 206 >gi|307946287|ref|ZP_07661622.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4] gi|307769951|gb|EFO29177.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4] Length = 206 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/206 (49%), Positives = 146/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L+P+ ++ RV+RWQ +++ G K+ RSEV T Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKTLQRSEVTGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGP+ H LPKKVR L L+H LS K ++ Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPIVRDHSHDLPKKVRVLGLKHVLSAKAKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + E KTK L + L++ALIIDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SLIVVEDAKAAEAKTKALKEQLAKAGLTSALIIDGAEVDANFALASRNIPHVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI++ + LVL+K+A+ ALE+RFK Sbjct: 181 NVYDIMQANTLVLTKAAVSALEERFK 206 >gi|302382619|ref|YP_003818442.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264] gi|302193247|gb|ADL00819.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 194 bits (493), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LS NLDG+ G + +S+ IF + +G +LAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSSINLDGKAAGDVELSDVIFGITDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGP+ LPKKVR+LALRHALS K + Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPIVRDHGFDLPKKVRALALRHALSSKVKT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KE KT L F L + LII G ++D NF LA+RNIP I++LP G Sbjct: 121 GDLVVVDALTVKEAKTSALRETFGKLGWTRTLIIAGPEVDANFALASRNIPQIHVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+KSA+EA+E + Sbjct: 181 LNVYDILRADKLVLTKSAVEAIEATY 206 >gi|154253178|ref|YP_001414002.1| 50S ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1] gi|171769628|sp|A7HWR2|RL4_PARL1 RecName: Full=50S ribosomal protein L4 gi|154157128|gb|ABS64345.1| ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1] Length = 206 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V L+ + G + +++ +FAL+P+ IL R++ WQ +++ G K+KGRSE+A TG Sbjct: 1 MKIDVTTLEAKKAGSVDLTDGVFALEPRGDILHRMVAWQLAKRQAGTHKTKGRSEIALTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + QFRGGGKAFGPV +PKKVR+LAL+ ALS K S+ Sbjct: 61 KKFVKQKGSGGARHGDRKAPQFRGGGKAFGPVVRSHAFDMPKKVRALALKLALSAKAKSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D E +TK F L L + LIIDG +LD NF LAARN+PN+++LPVQGI Sbjct: 121 NLVILDEAKLAEPRTKAAKDAFEKLGLKSVLIIDGAELDANFALAARNLPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A+E+LE RFK Sbjct: 181 NVYDILRREKLVLTKAAVESLEARFK 206 >gi|167645579|ref|YP_001683242.1| 50S ribosomal protein L4 [Caulobacter sp. K31] gi|189029494|sp|B0T2C3|RL4_CAUSK RecName: Full=50S ribosomal protein L4 gi|167348009|gb|ABZ70744.1| ribosomal protein L4/L1e [Caulobacter sp. K31] Length = 212 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V NLDG G + + + IF + +G IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R++ALRHALS K S Sbjct: 61 GKKMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D V + KT L F + L NAL+I G ++D NF+LAARNIPNI++LP G Sbjct: 121 GSIIVLDTAVLTDPKTAALRANFDKIGLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRHTLVLTKDAVEAISARF 206 >gi|315497974|ref|YP_004086778.1| ribosomal protein l4/l1e [Asticcacaulis excentricus CB 48] gi|315415986|gb|ADU12627.1| ribosomal protein L4/L1e [Asticcacaulis excentricus CB 48] Length = 210 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 134/207 (64%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G + VS+ +F L+ + ILARV+ WQ ++R G K + R+E + T Sbjct: 1 MKLDVITLDNGTAGSVDVSDAVFGLEEIRNDILARVVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKG+G ARH S+ QF GG +AFGPV L KKVR+L LRHALS K + Sbjct: 61 GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLQKKVRALGLRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D KT L +F L L NALII G ++D NF LA+RNIPNI++LP G Sbjct: 121 GALIVLDQATLDSAKTAALRAKFETLGLKNALIIAGPEVDTNFALASRNIPNIDVLPSAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+LR LVL+KSA+EA+E RFK Sbjct: 181 LNVYDVLRRHTLVLTKSAVEAIEARFK 207 >gi|197104697|ref|YP_002130074.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1] gi|226730702|sp|B4R8L8|RL4_PHEZH RecName: Full=50S ribosomal protein L4 gi|196478117|gb|ACG77645.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1] Length = 212 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/207 (47%), Positives = 135/207 (65%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G I + +DIF ++ + IL R + WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKGGSIELPDDIFGIEEIRADILQRCVTWQLAKRRAGTHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ +QF GG KA GPV LPKKVR+LALRHALS K Sbjct: 61 GKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKVRALALRHALSSKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ E KT L F + ++NAL+I G Q+D N +LAARNIPN+++LP G Sbjct: 121 GSLIVLDSATLTEAKTAALRASFEKIGVTNALVIAGAQVDNNLKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+LR LVL+K A+ A++ RF+ Sbjct: 181 LNVYDVLRRRTLVLTKDAVAAIQARFQ 207 >gi|126736643|ref|ZP_01752383.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2] gi|126713956|gb|EBA10827.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2] Length = 206 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 93/198 (46%), Positives = 129/198 (65%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 LDG+ G + ++++IF L+P++ IL RV+RWQ + G GRSEV+Y+ K+Y QK Sbjct: 8 LDGKKAGSVELNDEIFGLEPRKDILHRVVRWQRNKAMQGTHDVLGRSEVSYSTKKIYRQK 67 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG ARH S+ FRGGG GP P H LPKK R L L+HALS K + +++++D+ Sbjct: 68 GTGGARHGSRGAPIFRGGGTYKGPTPRSHAHDLPKKFRKLGLKHALSAKVAAGELVIVDD 127 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + K+ KT L + +L ALIIDG +++ +F+ AA NI IN+LP QG NVYDILR Sbjct: 128 INVKDSKTSALAKQLGSLGWKRALIIDGSEVNADFKKAAANITTINVLPSQGANVYDILR 187 Query: 189 CSKLVLSKSAIEALEDRF 206 LVL+K+ +EALE R Sbjct: 188 SDTLVLTKAGVEALEARL 205 >gi|16125498|ref|NP_420062.1| 50S ribosomal protein L4 [Caulobacter crescentus CB15] gi|221234244|ref|YP_002516680.1| 50S ribosomal protein L4 [Caulobacter crescentus NA1000] gi|46577288|sp|Q9A8V2|RL4_CAUCR RecName: Full=50S ribosomal protein L4 gi|254803724|sp|B8H4D5|RL4_CAUCN RecName: Full=50S ribosomal protein L4 gi|13422580|gb|AAK23230.1| ribosomal protein L4 [Caulobacter crescentus CB15] gi|220963416|gb|ACL94772.1| LSU ribosomal protein L1E-L4P [Caulobacter crescentus NA1000] Length = 212 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G + + + IF + +G IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKAGSVDLDDAIFGIDEIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R+LALRHALS K + Sbjct: 61 SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ E KT L F + L NAL+I G ++D NF+LAARNIPN+++LP G Sbjct: 121 GSLVVVDSVALTEAKTAALRATFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206 >gi|329850208|ref|ZP_08265053.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19] gi|328840523|gb|EGF90094.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19] Length = 210 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G + +S+ +F + + IL RV+ WQ ++R G K + R+E + T Sbjct: 1 MKLDVITLDASAAGSVELSDLVFGISDIRADILHRVVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKG+G ARH S+ QF GG +AFGPV LPKKVR+L LRHALS K Sbjct: 61 GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLPKKVRALGLRHALSSKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D V KT L F L L+NAL I G ++D NF LA+RNIPNI++LP G Sbjct: 121 GALIVLDQAVVASPKTSALKASFEKLGLNNALFITGAEVDTNFALASRNIPNIDVLPTAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+ +A+EA+E RF Sbjct: 181 LNVYDILRRHKLVLTTAAVEAIEARF 206 >gi|163796918|ref|ZP_02190875.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199] gi|159177907|gb|EDP62456.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199] Length = 206 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 129/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLD E G I + + IF L P++ ILARV+ WQ ++R G K+K SE++ T Sbjct: 1 MKLEVTNLDAEKTGEIDLDDSIFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +QFRGG GPV H LPKKVR L L+ ALS K S Sbjct: 61 KKPFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + E KTK L +F L + L+IDG +L+ F AARNIP +++LP QG Sbjct: 121 QLIVLDAASTDEAKTKLLAAKFEKLGWQSVLVIDGPELNEGFARAARNIPRVDVLPQQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL++ A+E LE R K Sbjct: 181 NVYDILRRETLVLTRGAVEHLEARLK 206 >gi|329889130|ref|ZP_08267473.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568] gi|328844431|gb|EGF93995.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568] Length = 212 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 104/206 (50%), Positives = 143/206 (69%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LSV LDG+ G + +S+ +F + +G +LAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGPV ++LPKKVR+LALRHALS K + Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGYSLPKKVRALALRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D++ KE KT L F L + ALII G +++ NF LAARNIP+I++LP G Sbjct: 121 GDLVVVDSVSVKEAKTASLRETFGKLGWTKALIIAGPEVETNFGLAARNIPHIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+K+A+EA+E RF Sbjct: 181 LNVYDILRADKLVLTKAAVEAIEARF 206 >gi|110180288|gb|ABG54387.1| 23S ribosomal protein L4 [Brucella ceti] Length = 176 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 134/206 (65%), Gaps = 30/206 (14%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGR------- 53 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 GGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 54 -----------------------GGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 90 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 91 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 150 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 151 NVYDILRRGKLVLSKAAVEALEERFK 176 >gi|288957423|ref|YP_003447764.1| large subunit ribosomal protein L4 [Azospirillum sp. B510] gi|288909731|dbj|BAI71220.1| large subunit ribosomal protein L4 [Azospirillum sp. B510] Length = 206 Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 132/206 (64%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +++NL+ E G I +S+ +F L + +LAR++ WQ ++R G K+KG SE++ T Sbjct: 1 MKATIKNLNNEAVGEIELSDAVFGLPARTDLLARMVNWQLAKRRSGNHKTKGISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QFRGG FGPV H L KKVR LAL+ ALS K Sbjct: 61 KKPYGQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHELTKKVRKLALKTALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ ++ KTK L R L L++ALIIDG LD NF A+RNIP I++LP QG Sbjct: 121 KLIVLEAAAAETHKTKELAARLATLGLTSALIIDGANLDENFAKASRNIPLIDVLPEQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A+E LE R K Sbjct: 181 NVYDILRRDTLVLTRNAVEQLEARLK 206 >gi|209964041|ref|YP_002296956.1| 50S ribosomal protein L4 [Rhodospirillum centenum SW] gi|226730714|sp|B6IRQ7|RL4_RHOCS RecName: Full=50S ribosomal protein L4 gi|209957507|gb|ACI98143.1| ribosomal protein L4 [Rhodospirillum centenum SW] Length = 206 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 133/206 (64%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V+NL+ E G I +++++F L +Q IL R++ WQ ++R G K+KG SE+A T Sbjct: 1 MKTTVKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S QFRGG + FGPV H L KKVR LAL+ ALS K Sbjct: 61 KKPWRQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++ + KTK L + + L L++ALIIDG LD F AARNIP++++LP QG Sbjct: 121 KLFVLEAAKADTHKTKALAAQLKTLGLTSALIIDGANLDETFVRAARNIPHLDVLPEQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A+E LE R K Sbjct: 181 NVYDILRRDVLVLTRNAVEQLEARLK 206 >gi|295688907|ref|YP_003592600.1| 50S 50S ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756] gi|295430810|gb|ADG09982.1| ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756] Length = 212 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G + + + IF + +G IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKAGSVDLDDAIFGIDDIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R+LAL+HALS K S Sbjct: 61 SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALKHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ V + KT L F + L NAL+I G ++D NF+LAARNIPN+++LP G Sbjct: 121 GSLVVLDSAVLTDPKTAALRANFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206 >gi|310817007|ref|YP_003964971.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25] gi|308755742|gb|ADO43671.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25] Length = 206 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 125/200 (62%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NLDG G + +++ IFAL+P+ IL R++RWQ R + G K G+SEV+Y+ K+Y Q Sbjct: 7 NLDGGAAGSVELNDAIFALEPRADILHRLVRWQRARAQQGTHKVLGKSEVSYSTKKIYRQ 66 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTG ARH SK FR GG GP P H L KK R+L L+HALS K + +++VI+ Sbjct: 67 KGTGGARHGSKKAPIFRHGGVYKGPTPRSHEHDLTKKFRALGLKHALSAKAKAGELVVIE 126 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 E KT L + L AL+IDG +D F AARNI N+++LP G NVYDIL Sbjct: 127 AATVAEAKTALLAKQLSNLGWKRALVIDGAAVDEGFARAARNIANLDILPSMGANVYDIL 186 Query: 188 RCSKLVLSKSAIEALEDRFK 207 R LVL+K+A+EALE R K Sbjct: 187 RSDTLVLTKAAVEALEARLK 206 >gi|159042833|ref|YP_001531627.1| 50S ribosomal protein L4 [Dinoroseobacter shibae DFL 12] gi|189029501|sp|A8LM49|RL4_DINSH RecName: Full=50S ribosomal protein L4 gi|157910593|gb|ABV92026.1| 50S ribosomal protein L4/L1e [Dinoroseobacter shibae DFL 12] Length = 205 Score = 184 bits (466), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 129/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDGE G + + E +F L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGEAAGSVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H LPKK R L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRKGGIYKGPTPRSHAHDLPKKFRKLGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + + E KT L + + L AL+IDG Q+D F AA NI +++LP G Sbjct: 121 ELVVID-MATSEGKTATLAKQIKNLGWKRALVIDGAQVDAGFAKAAANIDTLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|260577180|ref|ZP_05845157.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2] gi|259020654|gb|EEW23973.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2] Length = 206 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 128/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I++ E +F L+P+ IL RV+RWQ + + G + R+EV+Y+ Sbjct: 1 MKLDVIKLDGGKAGSITLDEALFGLEPRADILHRVVRWQRAKAQAGTHSTLTRAEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H LPKK R+L LRHALS K + Sbjct: 61 KKIYKQKGTGGARHGSKKAPIFRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D + K+ L + L LIIDG ++D NF LAARNI I++LP G Sbjct: 121 ELIILDVATMADAKSSILAKAAKELGWKRVLIIDGAEVDANFALAARNIEGIDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ +LV++K+ +EALE R K Sbjct: 181 NVYDILKRDQLVITKAGVEALEARLK 206 >gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37] gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLDG G + + E +F L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVINLDGGSAGEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR+L L+ ALSDK + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSDKARNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID+ + KTK L + L ALIIDG +++ NF AARNI +++LP G Sbjct: 121 ALIVIDS-IDGASKTKALAAQVSKLGWKRALIIDGAEVNENFAKAARNIEGLDVLPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238] gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 124/199 (62%), Gaps = 1/199 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 LDG+ G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ K+Y QK Sbjct: 8 LDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQK 67 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG ARH ++S FRGGG GP P H L KK R L LRHALS K + +++++D+ Sbjct: 68 GTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDS 127 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + K+ KT L + AL LIID ++ NF +AARNI IN LPV G NVYDILR Sbjct: 128 IDMKDAKTSALAKQVGALGWKRCLIID-ATVNENFAVAARNITTINALPVMGANVYDILR 186 Query: 189 CSKLVLSKSAIEALEDRFK 207 LVL+K+ +EALE R K Sbjct: 187 SDTLVLTKAGVEALEARLK 205 >gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307] gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307] Length = 205 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 124/199 (62%), Gaps = 1/199 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 LDG+ G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ K+Y QK Sbjct: 8 LDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQK 67 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG ARH ++S FRGGG GP P H L KK R L LRHALS K + +++++DN Sbjct: 68 GTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDN 127 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + K+ KT L AL LIID ++ +F +AARNI +IN LPV G NVYDILR Sbjct: 128 IDIKDAKTSALAKTVGALGWKRCLIID-ATVNEDFAVAARNITSINALPVMGANVYDILR 186 Query: 189 CSKLVLSKSAIEALEDRFK 207 LVL+K+ +EALE R K Sbjct: 187 SDTLVLTKAGVEALEARLK 205 >gi|114799746|ref|YP_761528.1| 50S ribosomal protein L4 [Hyphomonas neptunium ATCC 15444] gi|123128466|sp|Q0BYB5|RL4_HYPNA RecName: Full=50S ribosomal protein L4 gi|114739920|gb|ABI78045.1| ribosomal protein L4 [Hyphomonas neptunium ATCC 15444] Length = 214 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V+ L G+ G I + + IF + +G IL R +RWQ R++ G K+K RSEV T Sbjct: 1 MELAVKTLAGDAAGNIDLDDAIFGIDEIRGDILQRTVRWQLARRQAGTHKAKSRSEVNRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG+G ARH S++ F GGG A GP H LPKK+R +AL HALS K Sbjct: 61 TKKSIKQKGSGGARHGSRNAPIFVGGGIAHGPRVRSHAHDLPKKIRKMALAHALSSKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + IMVID KTK L+ F+ L + NALII G +++ NF AARNIPNI++LPV G Sbjct: 121 SSIMVIDTCELDSPKTKGLIQAFKDLGIENALIISGTEVNENFARAARNIPNIDVLPVAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LV++K A E ++ RF Sbjct: 181 LNVYDILRRRTLVITKEAAEGIKARF 206 >gi|17987041|ref|NP_539675.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. 16M] gi|17982697|gb|AAL51939.1| lsu ribosomal protein l1e (= l4p) [Brucella melitensis bv. 1 str. 16M] Length = 201 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/171 (52%), Positives = 121/171 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA P Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAAFEYPE 171 >gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1] gi|109893599|sp|Q28UW1|RL4_JANSC RecName: Full=50S ribosomal protein L4 gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1] Length = 206 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 126/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LDG+ G + + E +F L+P+ IL RV+RWQ + G K K R EV+Y+ Sbjct: 1 MKVDVIKLDGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R L LRHALS K Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI+++ E KT L + + + ALIIDG +D NF AARNI +++LP G Sbjct: 121 RLVVIESIAMDEAKTSALAKQVKEMGWKRALIIDGSDVDANFAQAARNIEGLDVLPTMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|83594019|ref|YP_427771.1| 50S ribosomal protein L4 [Rhodospirillum rubrum ATCC 11170] gi|109893631|sp|Q2RQW1|RL4_RHORT RecName: Full=50S ribosomal protein L4 gi|83576933|gb|ABC23484.1| LSU ribosomal protein L4P [Rhodospirillum rubrum ATCC 11170] Length = 206 Score = 180 bits (457), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 130/202 (64%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V+ LDG+D G I +S+ +F L + +L R++RWQ R++ G K+KG SE++ T +K + Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG AR SK QFRGG FGPV H L KKVR L L+ ALS K + ++V Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIV 124 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 +D +S+ KTK L+ + + L L L IDG +++ F LAARNI +++LP QG NVYD Sbjct: 125 LDQAISESGKTKDLLAQLKVLGLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVYD 184 Query: 186 ILRCSKLVLSKSAIEALEDRFK 207 ILR LVL+K A++ LE+R + Sbjct: 185 ILRRDTLVLTKEAVKHLEERLQ 206 >gi|85703988|ref|ZP_01035091.1| 50S ribosomal protein L4 [Roseovarius sp. 217] gi|85671308|gb|EAQ26166.1| 50S ribosomal protein L4 [Roseovarius sp. 217] Length = 205 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH K+ FR GG GP P H LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID + S KT L + + L AL+IDG Q++ F AA NI +++LP G Sbjct: 121 ELVIID-VASSNGKTGELAKQVKNLGWKRALVIDGAQVNAEFARAAANIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|255262953|ref|ZP_05342295.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62] gi|255105288|gb|EET47962.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62] Length = 206 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 123/199 (61%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 +DG G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ K+Y QK Sbjct: 8 MDGGKAGSVDLDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQK 67 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG ARH ++S FRGGG GP H L KK R L LRHALS K + ++++ID Sbjct: 68 GTGGARHGARSAPIFRGGGVYKGPTVRSHGHELTKKFRKLGLRHALSAKATAGELVIIDV 127 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 K+ KT L + + L ALIIDG +++ NF +AARNI +++LP G NVYDIL+ Sbjct: 128 ADLKDAKTSALAKQVKDLGWKRALIIDGAEVNENFAVAARNIDTVDILPSMGANVYDILK 187 Query: 189 CSKLVLSKSAIEALEDRFK 207 LVL+K+ +EALE R K Sbjct: 188 SDTLVLTKAGVEALEARLK 206 >gi|23014087|ref|ZP_00053924.1| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum MS-1] Length = 206 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 128/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +LD + G I ++++IF L + IL R + WQ +++ G K+K SE++ T Sbjct: 1 MKTNVISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV H LPKKVR LAL+ ALS K Sbjct: 61 KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L R L LS+ L IDG +D NF LA+RNIP +++LP QG Sbjct: 121 KLIVVDNATAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPQQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 181 NVYDILRRETLVLTKDAVAALEARLK 206 >gi|114570344|ref|YP_757024.1| 50S ribosomal protein L4 [Maricaulis maris MCS10] gi|122315785|sp|Q0ANQ1|RL4_MARMM RecName: Full=50S ribosomal protein L4 gi|114340806|gb|ABI66086.1| LSU ribosomal protein L4P [Maricaulis maris MCS10] Length = 211 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ L +D G I + + +F ++ + +L RV++WQ ++ G K+ GRSE+ T Sbjct: 1 MKIEVKTLAAKDAGAIDLDDAVFGIEEVRSDLLQRVVKWQLAARQQGTHKTLGRSEINRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 + QKG G ARH ++S QF GGGKA GP H LPKKVR+L LRHALS K + Sbjct: 61 KKRFGRQKGGGTARHGARSAPQFVGGGKAHGPRVRSHAHELPKKVRALGLRHALSAKLGA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ID+ +TK L T F L +SNAL+I G +++ NF AARN+P I++LP QG Sbjct: 121 KSLVIIDDAALDAPQTKALRTSFEGLGISNALVISGAEVNENFAKAARNLPCIDVLPAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K+A+E + R Sbjct: 181 LNVYDVLRRDTLVLTKAAVEQIHARL 206 >gi|260425505|ref|ZP_05779485.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45] gi|260423445|gb|EEX16695.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45] Length = 205 Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + ++++IF L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGTAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR+L L+ ALS K S Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRALGLKMALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID S E KTK L + ++L ALIIDG ++ F AA NI +++LP G Sbjct: 121 ALVVIDTADS-EGKTKALAAQVKSLGWKRALIIDGAAVNEAFAKAAANIDGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|294085959|ref|YP_003552719.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665534|gb|ADE40635.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum IMCC1322] Length = 258 Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ LD + G I+V + +FA+ P+ +LARV++WQ ++R G K K RSEVA T Sbjct: 54 MKLNVKTLDNKAAGDITVDDTVFAVAPRADLLARVVKWQLAKRRAGSHKVKSRSEVARTT 113 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARH + SV QFRGGG GPV HALPKKVR LR ALS K Sbjct: 114 AKMFRQKGTGRARHGAASVVQFRGGGVVHGPVVRDHGHALPKKVRRAGLRSALSSKASEG 173 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D LVSK KT L + L NALII G +LD F AA NIP +++LP QGI Sbjct: 174 KLIVLDKLVSK-GKTAALRAQLSKLGAENALIIGGEELDAGFVNAASNIPLVDVLPQQGI 232 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR L+LSK A LE+R K Sbjct: 233 NVYDILRRDVLILSKDAAAHLEERLK 258 >gi|83941499|ref|ZP_00953961.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36] gi|83847319|gb|EAP85194.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36] Length = 205 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID++ S + KT L + + L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDVTS-DGKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|83854977|ref|ZP_00948507.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1] gi|83842820|gb|EAP81987.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1] Length = 205 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID+ S + KT L + + L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDATS-DGKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|83949794|ref|ZP_00958527.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM] gi|83837693|gb|EAP76989.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM] Length = 205 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKKVR L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKVKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++I+ S KT L + + L ALIIDG +++ F AARNI +++LP G Sbjct: 121 ELVIIEAADS-AGKTSALAKQVKDLGWKRALIIDGAEVNAEFAKAARNIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040] gi|122398432|sp|Q1GK36|RL4_SILST RecName: Full=50S ribosomal protein L4 gi|99036368|gb|ABF62980.1| LSU ribosomal protein L4P [Ruegeria sp. TM1040] Length = 205 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AA+NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+KSA+EALE R K Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205 >gi|89070556|ref|ZP_01157845.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516] gi|89043863|gb|EAR50061.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516] Length = 206 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 124/206 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LDG G + + E++F L+P+ IL RV+RWQ + G K K R E +Y+ Sbjct: 1 MKADVIKLDGGKAGSVELDEELFGLEPRTDILHRVVRWQRNNAQQGTHKVKTRRETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKQKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + E KT L + + L AL+IDG ++ +F AARN+ N+++LP G Sbjct: 121 ELVVIDTIEIAEAKTSQLAKQVKNLGWKRALVIDGAAVNEDFAKAARNLANLDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 181 NVYDILKSDTLVLTKAGVEALEARLK 206 >gi|83858565|ref|ZP_00952087.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633] gi|83853388|gb|EAP91240.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633] Length = 212 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G I +S+ +F ++ + IL R ++WQ R++ G K+K R E+A T Sbjct: 1 MKLDVVTLDAGKAGSIDLSDAVFGIEEVRADILQRAVKWQLSRRQAGTHKTKERGEIART 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG G ARH S++ F GGG A GP LPKKVR+LAL+HALS K + Sbjct: 61 KKKFGRQKGGGGARHGSRNAPIFVGGGVAHGPRVRSHATELPKKVRALALKHALSTKAGA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D E KTK L +F L SNALIIDG LD NF AARNIP I++LP QG Sbjct: 121 KQLVILDEARLDEAKTKALTEKFSKLGWSNALIIDGETLDENFARAARNIPLIDVLPAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K+A+E + +R Sbjct: 181 LNVYDVLRRDVLVLTKAAVEKINERL 206 >gi|259416401|ref|ZP_05740321.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B] gi|259347840|gb|EEW59617.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B] Length = 205 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL R++RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AA+NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+KSA+EALE R K Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205 >gi|149203512|ref|ZP_01880482.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035] gi|149143345|gb|EDM31384.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035] Length = 205 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH K+ FR GG GP P H LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D S KT L + + L L+IDG Q++ F AA NI +++LP G Sbjct: 121 ALVILDE-ASSNGKTGELAKQVKNLGWKRVLVIDGAQVNAEFARAAANIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|254487620|ref|ZP_05100825.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101] gi|214044489|gb|EEB85127.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101] Length = 205 Score = 174 bits (442), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGSAGSIDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHELTKKFRKLGLRHALSSMAKNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID+ S + KT L + ++L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDATS-DGKTSALAKQVKSLGWKRALIIDGASVNENFLQAARNIEGLDILPSVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|83312228|ref|YP_422492.1| 50S ribosomal protein L4 [Magnetospirillum magneticum AMB-1] gi|109893601|sp|Q2W2J2|RL4_MAGMM RecName: Full=50S ribosomal protein L4 gi|82947069|dbj|BAE51933.1| Ribosomal protein L4 [Magnetospirillum magneticum AMB-1] Length = 206 Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 127/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +LD + G I ++++IF + + IL R + WQ +++ G K+K SE++ T Sbjct: 1 MKTNVISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV H LPKKVR LAL+ ALS K Sbjct: 61 KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK L R L LS+ L IDG +D NF LA+RNIP +++LP QG Sbjct: 121 KLIVVDAASAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 181 NVYDILRRDTLVLTKDAVAALEARLK 206 >gi|86135763|ref|ZP_01054342.1| 50S ribosomal protein L4 [Roseobacter sp. MED193] gi|85826637|gb|EAQ46833.1| 50S ribosomal protein L4 [Roseobacter sp. MED193] Length = 205 Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLDG G I ++ D+F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVMNLDGSKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GPV H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI + + E KT L + L AL+IDG +++ F A+RNI +++LP G Sbjct: 121 ELVVISD-AAAEGKTGALAKQVANLGWKRALVIDGAEVNEGFLKASRNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGLEALEARLK 205 >gi|126724862|ref|ZP_01740705.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150] gi|126706026|gb|EBA05116.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150] Length = 206 Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 128/205 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG+ G + ++ED+F L+ + IL RV+R+Q +++ G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGKKAGSVDLAEDLFGLEARADILHRVVRYQLAKRQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R+L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHAHDLNKKFRALGLRHALSAKAGAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D V + KT L + L AL+IDG +++ NF A+ NI +++LP G Sbjct: 121 QLVVLDEAVVADGKTGVLAKMVKELGWKRALVIDGAEVNANFAQASANIDGLDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LV++K+ +EALE R Sbjct: 181 NVYDILKRDTLVVTKAGLEALEARL 205 >gi|149915845|ref|ZP_01904369.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b] gi|149810168|gb|EDM70014.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLGEDIFGLDPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKKVR L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D S + KT L + + L LIIDG +++ +F AA NI +++LP G Sbjct: 121 ELVVLDAATS-DGKTGALAKQIKDLGWKRVLIIDGAEVNADFARAAANIEGVDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|260432430|ref|ZP_05786401.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis ITI-1157] gi|260416258|gb|EEX09517.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis ITI-1157] Length = 205 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG+ G I + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGKKAGDIELDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLPKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID E KT L + L AL+IDG ++ F AARNI +++LP G Sbjct: 121 ELVVID-AAEAEGKTAALAKQVANLGWKRALVIDGATVNEGFARAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|254460398|ref|ZP_05073814.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium HTCC2083] gi|206676987|gb|EDZ41474.1| ribosomal protein L4/L1 family [Rhodobacteraceae bacterium HTCC2083] Length = 205 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GPV H LPKKVR+L L+ ALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHDLPKKVRALGLKLALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + KT L + A+ ALIIDG ++ +F AARNI +++LP G Sbjct: 121 ELVVIDE-AAGAMKTSALAKQVSAMGWKRALIIDGASVNEDFMQAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|126739690|ref|ZP_01755382.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6] gi|126719336|gb|EBA16046.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6] Length = 205 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL R++RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRLVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI++ S E KT L + + L AL+IDG ++ +F A+RNI +++LP G Sbjct: 121 ELVVIEDAAS-EGKTAALAKQVKDLGWKRALVIDGASVNEDFLKASRNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|254510767|ref|ZP_05122834.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11] gi|221534478|gb|EEE37466.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I ++ D+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FRGGG GPV H LPKK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F A++NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGATVNEGFLKASKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+A+EALE R K Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205 >gi|146278567|ref|YP_001168726.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17025] gi|166199854|sp|A4WVK7|RL4_RHOS5 RecName: Full=50S ribosomal protein L4 gi|145556808|gb|ABP71421.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17025] Length = 206 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD G I + + IF L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKAEVIKLDASSAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+++ E KT L + L L+IDG ++ NF AARN+ I++LP G Sbjct: 121 NLIVIEDIAMSEAKTALLAKAVKELGWKRVLVIDGADINENFAKAARNLEGIDVLPSIGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|304321441|ref|YP_003855084.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503] gi|303300343|gb|ADM09942.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503] Length = 220 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LD G + + +DIF L+P+ IL R + WQ +++ G K+K R EV T Sbjct: 1 MQIDVLTLDASKAGDLDLRDDIFGLEPRADILHRYVVWQQAKRQQGTHKAKERGEVTGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QF GGGKA GP H LPKKVR LALRHALS K + Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFVGGGKAHGPRVRSHAHDLPKKVRRLALRHALSAKQGAA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID + KTK L + + L + N+L+ID +D F AARN+ +++LPV G Sbjct: 121 ELIIIDEATVADVKTKVLAEKLQKLGVRNSLVIDQS-VDEGFARAARNLDGVDVLPVIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR KL+L+++A+E L R Sbjct: 180 NVYDILRHDKLILTRAAVEGLYARL 204 >gi|84503641|ref|ZP_01001679.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597] gi|84387938|gb|EAQ00990.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597] Length = 205 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + ++IF L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGSSAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GPVP H LPKK R L L+HALS K Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVPRSHGHDLPKKFRKLGLKHALSAKVKEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++ID S E KT L + +AL ALIIDG ++ F AA NI +++LP G Sbjct: 121 SLVIIDAAES-EGKTNALAKQVKALGWKRALIIDGAAVNEGFAKAAANIDGLDVLPSVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|84685436|ref|ZP_01013334.1| 50S ribosomal protein L4 [Maritimibacter alkaliphilus HTCC2654] gi|84666593|gb|EAQ13065.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2654] Length = 205 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVELDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L L+HALS K Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID + KTK L + L ALIIDG +++ NF AARNI +++LP G Sbjct: 121 AIVVIDT-AEADGKTKVLAKLVKDLGWKRALIIDGAEVNENFAKAARNIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|56698635|ref|YP_169012.1| 50S ribosomal protein L4 [Ruegeria pomeroyi DSS-3] gi|81558238|sp|Q5LLU7|RL4_SILPO RecName: Full=50S ribosomal protein L4 gi|56680372|gb|AAV97038.1| ribosomal protein L4 [Ruegeria pomeroyi DSS-3] Length = 205 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + G K +SEV+Y+ Sbjct: 1 MKLDVIKLDGTKAGNIDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKSPTFRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AARNI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+A+EALE R K Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205 >gi|163739438|ref|ZP_02146848.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107] gi|161387191|gb|EDQ11550.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107] Length = 205 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + ++F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N S KT L + + L AL+IDG +D F AARNI +++LP G Sbjct: 121 ELVVIENADS-AGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|163745538|ref|ZP_02152898.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45] gi|161382356|gb|EDQ06765.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45] Length = 205 Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG + G + + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGNAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++ID S E KT L + L L+IDG ++ NF AARNI +++LP G Sbjct: 121 SLVIIDEATS-EGKTAALAKQVSNLGWKRTLVIDGASVNENFAQAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|163740232|ref|ZP_02147626.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10] gi|161386090|gb|EDQ10465.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + ++F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKVGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N S KT L + + L AL+IDG +D F AARNI +++LP G Sbjct: 121 ELVVIENADS-AGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|254294439|ref|YP_003060462.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814] gi|254042970|gb|ACT59765.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814] Length = 309 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V NLD + G + +++ +F ++ + IL R++R+Q +++ G K++ RSEV T Sbjct: 1 MKLDVINLDAKKAGSVELNDAVFGIEDVRPDILQRMVRYQLAKRQAGTHKTQTRSEVNKT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 ++ QKG G ARH S++ F GGG A GP H L KK R+LAL+HALS K Sbjct: 61 KTRFGRQKGGGGARHGSRNAPIFVGGGVAHGPKVRSHAHDLTKKFRALALKHALSAKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V++ E KTK L +F AL L NAL+I G LD NF AARNIPNI++LP G Sbjct: 121 SSLIVLEEAAVSEVKTKALRAQFEALGLKNALVIGGESLDDNFAKAARNIPNIDVLPFAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++R LVL+K A++A+ RF Sbjct: 181 LNVYDVMRRHTLVLTKEAVDAVHARF 206 >gi|163733827|ref|ZP_02141269.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149] gi|161392938|gb|EDQ17265.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149] Length = 205 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP H L KK R L L HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID+ VS + KT L + L ALIIDG ++ F AARNI +++LP G Sbjct: 121 ELVIIDD-VSSDGKTSALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|114771268|ref|ZP_01448688.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255] gi|114548193|gb|EAU51080.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255] Length = 206 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 126/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V LD + G I + + +F L+P+ IL RV+R+Q +++ G K K RSE +Y+ Sbjct: 1 MKANVIKLDAKSAGSIDLDDSVFGLEPRADILHRVVRYQLAKRQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FRGGG GP H L KK R L L+HALS K + Sbjct: 61 KKIYNQKGTGGARHGDRNAPIFRGGGVYKGPKVRSHAHDLTKKFRKLGLKHALSAKATAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID++ +K KT L L LIIDG ++ NF LA+RNI +++LP G Sbjct: 121 ELIVIDSVEAKTSKTADLAKVVTNLGWKKVLIIDGTDVNENFLLASRNIDGLDILPSAGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ + LVL+K+ EALE R K Sbjct: 181 NVYDILKSNTLVLTKAGAEALEARLK 206 >gi|77462260|ref|YP_351764.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides 2.4.1] gi|126461136|ref|YP_001042250.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17029] gi|221638114|ref|YP_002524376.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131] gi|109893632|sp|Q3J5S1|RL4_RHOS4 RecName: Full=50S ribosomal protein L4 gi|166199853|sp|A3PGL2|RL4_RHOS1 RecName: Full=50S ribosomal protein L4 gi|254803750|sp|B9KL92|RL4_RHOSK RecName: Full=50S ribosomal protein L4 gi|77386678|gb|ABA77863.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides 2.4.1] gi|126102800|gb|ABN75478.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17029] gi|221158895|gb|ACL99874.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131] Length = 206 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD G I + + IF L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKAEVIKLDASPAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V++++ E KT L + L L+IDG ++ NF AARN+ +++LP G Sbjct: 121 NLIVLEDIALAEGKTAMLAKAVKELGWKRVLVIDGADINENFAKAARNLEGVDVLPSIGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|254463733|ref|ZP_05077144.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I] gi|206684641|gb|EDZ45123.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I] Length = 205 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GPV H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++I++ + E KT L + + L ALIIDG ++ F A+RNI +++LP G Sbjct: 121 ELVIIEDAAA-EGKTAALAKQVKNLGWKRALIIDGASVNEGFLQASRNIEGLDILPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|294675857|ref|YP_003576472.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003] gi|294474677|gb|ADE84065.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003] Length = 206 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKLDVIKLDGGTAGSIELDEALFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L LRHALS K S Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLTKKFRALGLRHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI+ E KT L + L L+IDG ++ NF LAARN+ I++LP G Sbjct: 121 SLVVIEAADMAEAKTALLAKAAKELGWKKVLVIDGASVNENFALAARNLDGIDVLPTMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114] gi|123172736|sp|Q16AF3|RL4_ROSDO RecName: Full=50S ribosomal protein L4 gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP H L KK R L L HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID VS + KT L + L ALIIDG ++ F AARNI +++LP G Sbjct: 121 ELVIIDE-VSSDGKTAALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|119383512|ref|YP_914568.1| 50S ribosomal protein L4 [Paracoccus denitrificans PD1222] gi|166234698|sp|A1B028|RL4_PARDP RecName: Full=50S ribosomal protein L4 gi|119373279|gb|ABL68872.1| LSU ribosomal protein L4P [Paracoccus denitrificans PD1222] Length = 206 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 127/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LD G I +S+DIF L+P+ +L RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKLDVITLDAGKAGDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D+L E KT + + L+IDG +++ NF AARN+ +++LP G Sbjct: 121 ELVVVDSLNIAEAKTAAVAKAVKENGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++ +EALE R K Sbjct: 181 NVYDILRRDTLVLTRAGVEALEARLK 206 >gi|144900885|emb|CAM77749.1| 50S ribosomal protein L4 [Magnetospirillum gryphiswaldense MSR-1] Length = 205 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V +LD + G I +S+D+F L + +L R++ +Q ++R G K+KG SE++ T Sbjct: 1 MKTKVISLDNQSVGEIDLSDDVFGLAVRNDLLHRMVSYQLSKRRSGTHKTKGISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV +PKKVR LAL+ ALS K Sbjct: 61 KKPFNQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAFDMPKKVRKLALKVALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L +F+AL ++ L+IDG +D NF LA+RNIP++++LP G Sbjct: 121 KLVVLDNATAAAPKTKALAAQFKALGWASVLVIDGA-VDGNFALASRNIPHVDVLPEVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 180 NVYDILRRDTLVLTKDAVAALEARLK 205 >gi|307294975|ref|ZP_07574817.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1] gi|306879449|gb|EFN10667.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1] Length = 207 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 126/205 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ LD + G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVNVQTLDAQAAGDLELNDAVFGVEPRTDILHRVVLWQLEKRRAPTRATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSTKAKNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DNL E KTK LV L+L+ AL IDG ++ +F A+ NI +NLLP G Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR LVL+++A+E LE RF Sbjct: 181 NVYDILRADSLVLTRAAVEKLEARF 205 >gi|149922210|ref|ZP_01910648.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1] gi|149816950|gb|EDM76435.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1] Length = 218 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 131/208 (62%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V++L+G D I VS+++FA + ++ +L V+RWQ +KR G +K+K RSEV T Sbjct: 1 MAKLNVKDLEGNDVAEIEVSDEVFAAEVKEHLLWEVVRWQRAKKRAGTAKTKERSEVHGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 SKMY QKGTG ARH S+ V+ FRGGG+ GP P ++ KK R+ ALR ALS + Sbjct: 61 RSKMYRQKGTGNARHGSRRVNVFRGGGQVHGPRPRDYTFSVNKKARAGALRSALSLRASE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 +++VI + + KT+ L L+ +L++DG N LA ARN+P + Sbjct: 121 GNLVVIRDFEVPDAKTRNLAAALGKLNAPKSLLVDGGD---NMSLARSARNLPTAQHIVP 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDILR KL++S+S++ ALE R Sbjct: 178 EGVNVYDILRFPKLLISESSLRALEARL 205 >gi|224370690|ref|YP_002604854.1| 50S ribosomal protein L4 [Desulfobacterium autotrophicum HRM2] gi|259491553|sp|C0Q9X2|RL4_DESAH RecName: Full=50S ribosomal protein L4 gi|223693407|gb|ACN16690.1| RplD [Desulfobacterium autotrophicum HRM2] Length = 207 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N GE +++++F++ ++ +L V+R Q R+R G +KSKGRSEV+ + Sbjct: 1 MAAVDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S RGGG FGP P +A+PKKVR+LAL+ ALS K + Sbjct: 61 TRKLYRQKGTGNARSGSVKSPLRRGGGVIFGPAPRSYAYAIPKKVRALALKMALSSKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179 N++ VID KTK + L L N LI IDG DRN L+ARNIP++ ++ + Sbjct: 121 NELSVIDTFAMDSIKTKEFDSIIDHLGLKNTLIVIDGD--DRNLVLSARNIPDVKVIRTE 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL+ L+L +SAI+ +E RF Sbjct: 179 GLNVYDILKYDNLLLIESAIKEIEGRF 205 >gi|148554273|ref|YP_001261855.1| 50S ribosomal protein L4 [Sphingomonas wittichii RW1] gi|166199910|sp|A5V601|RL4_SPHWW RecName: Full=50S ribosomal protein L4 gi|148499463|gb|ABQ67717.1| LSU ribosomal protein L4P [Sphingomonas wittichii RW1] Length = 208 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LD + G I +++++FA++P+ ILARV++WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQTLDAKASGDIELNDEVFAVEPRADILARVVQWQLHNRRAPARAARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP + +L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L K+ KTK L+ + L + AL+IDG +D FQLA+ NI IN+LP G Sbjct: 121 KLVVVDTLELKDAKTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 ANVYDILKHETLVLTRAAVEKLEARF 206 >gi|294010614|ref|YP_003544074.1| ribosomal protein L4 [Sphingobium japonicum UT26S] gi|292673944|dbj|BAI95462.1| ribosomal protein L4 [Sphingobium japonicum UT26S] Length = 207 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 123/205 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LD G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVKVQTLDAAAAGEVELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DNL E KTK LV L+L+ AL IDG ++ +F A+ NI ++LLP G Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIIGVDLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205 >gi|132978|sp|P28601|RL4_BACST RecName: Full=50S ribosomal protein L4; Short=BL4 gi|40103|emb|CAA47403.1| ribosomal protein L4 [Geobacillus stearothermophilus] Length = 207 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/204 (40%), Positives = 125/204 (61%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++P G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVPANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEE 204 >gi|205372068|ref|ZP_03224885.1| 50S ribosomal protein L4 [Bacillus coahuilensis m4-4] Length = 207 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 121/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N G G I +++ IF ++P Q ++ + Q R G K KGRSEVA Sbjct: 1 MPKVSLLNQTGSQVGDIELNDSIFGIEPNQSVMFDAVIMQRASLRQGNHKVKGRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSTKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L KTK V + L L N +++ LD N L+ARNIP + ++P G Sbjct: 121 ENIIVLDQLTFAAPKTKEFVAVLKNLSLDNKVLVVTDGLDENVALSARNIPGVTVVPSNG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+V D+L KLV++K+A+E +E+ Sbjct: 181 ISVLDVLGHDKLVMTKAAVEKVEE 204 >gi|94498477|ref|ZP_01305033.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58] gi|94422020|gb|EAT07065.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58] Length = 207 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 124/205 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ LD + G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVNVQTLDAQTAGELELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRKAPIFIGGGKAHGARARDFGHDLNKKVRALGLKMALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ E KTK LV L+L+ AL IDG ++ +F A+ NI +NLLP G Sbjct: 121 SLIVLDSFDVAEGKTKTLVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205 >gi|103488294|ref|YP_617855.1| 50S ribosomal protein L4 [Sphingopyxis alaskensis RB2256] gi|123252916|sp|Q1GPA0|RL4_SPHAL RecName: Full=50S ribosomal protein L4 gi|98978371|gb|ABF54522.1| LSU ribosomal protein L4P [Sphingopyxis alaskensis RB2256] Length = 208 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 123/205 (60%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LDG+ I +++D+F L + IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKIKVQTLDGKAGADIDLNDDVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP H+L KK+R+L L+ ALSDK Sbjct: 61 KKFGRQKGGGTARHGDRRAPIFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID L K+ KTK L + LDL AL IDG + +F +A+ N+ ++ LP G Sbjct: 121 KLVVIDTLELKDAKTKALAGKLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 NVYDI+R LVL+++A+E LE R Sbjct: 181 ANVYDIVRADTLVLTRAAVEKLEAR 205 >gi|239825694|ref|YP_002948318.1| 50S ribosomal protein L4 [Geobacillus sp. WCH70] gi|259491561|sp|C5D3R8|RL4_GEOSW RecName: Full=50S ribosomal protein L4 gi|239805987|gb|ACS23052.1| ribosomal protein L4/L1e [Geobacillus sp. WCH70] Length = 207 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 123/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N GE G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQSGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+DNL + KTK +V L + +I ++ N L+ARNIP + ++ G Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDDVNENVTLSARNIPGVTVVTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEE 204 >gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] Length = 215 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V N + EDKG ++++ DIF + ++ I+ V++WQ ++R G +K R EVA + K Sbjct: 6 LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 ++ QKGTG+ARH S+ QFRGGG A GP P + L KKVR L L+ ALS + + Sbjct: 66 IHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGIN 182 M+ DN+ KT+ L+ L LI+DG + + R LA RN+ +N++P +G+N Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S +A+ +EDR Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209 >gi|56418642|ref|YP_145960.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426] gi|261417608|ref|YP_003251290.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC61] gi|297528483|ref|YP_003669758.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3] gi|319765266|ref|YP_004130767.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52] gi|81558135|sp|Q5L3Z6|RL4_GEOKA RecName: Full=50S ribosomal protein L4 gi|56378484|dbj|BAD74392.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426] gi|261374065|gb|ACX76808.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61] gi|297251735|gb|ADI25181.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3] gi|317110132|gb|ADU92624.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52] Length = 207 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 124/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEE 204 >gi|297717844|gb|ADI50065.1| LSU ribosomal protein L4p [Candidatus Odyssella thessalonicensis L13] Length = 206 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V N++ + G I ++ +IF L+P+ IL+RV+ WQ ++R G K+K +V + Sbjct: 1 MKIDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK QFRGG FGPV ++LPKKVR L L+ ALS K + Sbjct: 61 RKIYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 +++V+D+ KTK L+ AL NAL+ID D AA N+ ++LP G Sbjct: 121 ELIVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLPHNG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDI+R KL+++K AI+ALE+R Sbjct: 181 ANVYDIMRKEKLIVTKEAIKALEERL 206 >gi|295401919|ref|ZP_06811882.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93] gi|312109262|ref|YP_003987578.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1] gi|294976049|gb|EFG51664.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93] gi|311214363|gb|ADP72967.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1] Length = 207 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 123/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+DNL + KTK +V L + +I + N L+ARNIP + ++ G Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDVANENVALSARNIPGVTVVTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDLLNHDKLVITKAAVEKVEE 204 >gi|152973957|ref|YP_001373474.1| 50S ribosomal protein L4 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189029490|sp|A7GK21|RL4_BACCN RecName: Full=50S ribosomal protein L4 gi|152022709|gb|ABS20479.1| ribosomal protein L4/L1e [Bacillus cytotoxicus NVH 391-98] Length = 207 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 121/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV+ Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVVMQRASLRQGTHKVKNRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I ++ +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLAVEKKALIVTADVNEAVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEE 204 >gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] Length = 215 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V N + EDKG ++++ DIF + ++ I+ V++WQ ++R G +K R EVA + K Sbjct: 6 LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG+ARH S+ QFRGGG A GP P + L KKVR L L+ ALS + + Sbjct: 66 INKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGIN 182 M+ DN+ KT+ L+ L LI+DG + + R LA RN+ +N++P +G+N Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S +A+ +EDR Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209 >gi|196251023|ref|ZP_03149705.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16] gi|196209495|gb|EDY04272.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16] Length = 207 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 124/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEE 204 >gi|212637955|ref|YP_002314475.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus WK1] gi|226730612|sp|B7GJ68|RL4_ANOFW RecName: Full=50S ribosomal protein L4 gi|212559435|gb|ACJ32490.1| Ribosomal protein L4 [Anoxybacillus flavithermus WK1] Length = 207 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 123/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+DNL + KTK +V L + +I + N L+ARNIP + ++ G Sbjct: 121 NSIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTADANENVILSARNIPGVTVVTASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEE 204 >gi|138893786|ref|YP_001124239.1| 50S ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2] gi|166234670|sp|A4IJJ0|RL4_GEOTN RecName: Full=50S ribosomal protein L4 gi|134265299|gb|ABO65494.1| Ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2] Length = 207 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 124/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLSHDKLVITKAAVEKVEE 204 >gi|91205876|ref|YP_538231.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C] gi|157826765|ref|YP_001495829.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389] gi|109893633|sp|Q1RHM2|RL4_RICBR RecName: Full=50S ribosomal protein L4 gi|166199856|sp|A8GVB5|RL4_RICB8 RecName: Full=50S ribosomal protein L4 gi|91069420|gb|ABE05142.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C] gi|157802069|gb|ABV78792.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389] Length = 207 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 120/203 (59%), Gaps = 1/203 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + NL E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T K Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG GPV LPKKVR L L HALS+KF ++ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVY Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQGKSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANVY 184 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DI+R ++LS+ A+ LE+R K Sbjct: 185 DIIRHEYVLLSQEAVNVLEERLK 207 >gi|229083431|ref|ZP_04215779.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44] gi|228699864|gb|EEL52501.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44] Length = 207 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLPVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEE 204 >gi|163938119|ref|YP_001643003.1| 50S ribosomal protein L4 [Bacillus weihenstephanensis KBAB4] gi|229009620|ref|ZP_04166846.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048] gi|229015513|ref|ZP_04172511.1| 50S ribosomal protein L4 [Bacillus cereus AH1273] gi|229021722|ref|ZP_04178304.1| 50S ribosomal protein L4 [Bacillus cereus AH1272] gi|229053957|ref|ZP_04195391.1| 50S ribosomal protein L4 [Bacillus cereus AH603] gi|229131119|ref|ZP_04260031.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196] gi|229165099|ref|ZP_04292894.1| 50S ribosomal protein L4 [Bacillus cereus AH621] gi|226730619|sp|A9VP78|RL4_BACWK RecName: Full=50S ribosomal protein L4 gi|163860316|gb|ABY41375.1| ribosomal protein L4/L1e [Bacillus weihenstephanensis KBAB4] gi|228618362|gb|EEK75392.1| 50S ribosomal protein L4 [Bacillus cereus AH621] gi|228652332|gb|EEL08257.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196] gi|228721375|gb|EEL72896.1| 50S ribosomal protein L4 [Bacillus cereus AH603] gi|228739590|gb|EEL90004.1| 50S ribosomal protein L4 [Bacillus cereus AH1272] gi|228745800|gb|EEL95804.1| 50S ribosomal protein L4 [Bacillus cereus AH1273] gi|228751642|gb|EEM01442.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048] Length = 207 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEE 204 >gi|58038854|ref|YP_190818.1| 50S ribosomal protein L4 [Gluconobacter oxydans 621H] gi|81557183|sp|Q5FTY4|RL4_GLUOX RecName: Full=50S ribosomal protein L4 gi|58001268|gb|AAW60162.1| LSU ribosomal protein L4P [Gluconobacter oxydans 621H] Length = 204 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ LD G +++ E+IFA+ P+ I+ARV+ WQ ++R G ++KG E++ T Sbjct: 1 MEYDIKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KT+ + +AL ++ALI+DG +D F A N+P I++LP G Sbjct: 121 KLIVLDA-ANGVTKTREAAAKIKALGWTSALIVDGA-VDEQFARAIANLPKIDVLPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL LV++++ +E L++R Sbjct: 179 NVYDILNHDVLVITRAGLEGLKERL 203 >gi|258542028|ref|YP_003187461.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01] gi|256633106|dbj|BAH99081.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01] gi|256636163|dbj|BAI02132.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-03] gi|256639218|dbj|BAI05180.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-07] gi|256642272|dbj|BAI08227.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-22] gi|256645327|dbj|BAI11275.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-26] gi|256648382|dbj|BAI14323.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-32] gi|256651435|dbj|BAI17369.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654426|dbj|BAI20353.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-12] Length = 204 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ ++ LD G ++ ++IFA+ P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + S KT L + ++L ++ALI+D +D NF AARN+P I++LP G Sbjct: 121 KLIVLQS-ASGVDKTSELAKKLKSLGWTSALIVDAA-VDENFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203 >gi|149184312|ref|ZP_01862630.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21] gi|148831632|gb|EDL50065.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21] Length = 207 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G I +++D+F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKASGDIELNDDVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G +L KK+R+L L+ ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRGAPIFIGGGKAHGARKRDFEQSLNKKIRALGLKMALSSK-AKD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L K+ KTK L F S LIIDG ++ F+ AA N+P +N+LP G Sbjct: 120 GLVVVDSLELKDAKTKALKGHFDKNGWSGKVLIIDGESVNDGFKKAAGNLPGVNVLPAMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEGRF 205 >gi|228989320|ref|ZP_04149311.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442] gi|228995502|ref|ZP_04155170.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17] gi|229003127|ref|ZP_04160973.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4] gi|228758090|gb|EEM07289.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4] gi|228764231|gb|EEM13110.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17] gi|228770398|gb|EEM18971.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442] Length = 207 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 119/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANEAVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEE 204 >gi|296282583|ref|ZP_06860581.1| 50S ribosomal protein L4 [Citromicrobium bathyomarinum JL354] Length = 207 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 126/206 (61%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ +DG G I +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKIAVQKIDGGKAGEIELNDAVFGVEPRADILHRVVTWQLEKRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + F GGGKA G +L KK+RSL LR ALS K + Sbjct: 61 KKFGRQKGSGGARHGDRGAPIFIGGGKAHGARKRDFDPSLNKKIRSLGLRMALSSK-AKD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D+L K+ KTK L F + L+IDG ++ F++AA N+P +N++P G Sbjct: 120 GLVIVDSLELKDAKTKALKGHFEKAGFNGKVLVIDGESVNDGFKMAAGNLPGVNVIPAVG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205 >gi|30018381|ref|NP_830012.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 14579] gi|30260302|ref|NP_842679.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames] gi|42779192|ref|NP_976439.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10987] gi|47525367|ref|YP_016716.1| 50S ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183145|ref|YP_026397.1| 50S ribosomal protein L4 [Bacillus anthracis str. Sterne] gi|49476718|ref|YP_034463.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145106|ref|YP_081722.1| 50S ribosomal protein L4 [Bacillus cereus E33L] gi|118475880|ref|YP_893031.1| 50S ribosomal protein L4 [Bacillus thuringiensis str. Al Hakam] gi|206972278|ref|ZP_03233225.1| 50S ribosomal protein L4 [Bacillus cereus AH1134] gi|217957686|ref|YP_002336230.1| 50S ribosomal protein L4 [Bacillus cereus AH187] gi|218234634|ref|YP_002364960.1| 50S ribosomal protein L4 [Bacillus cereus B4264] gi|218895246|ref|YP_002443657.1| ribosomal protein L4 [Bacillus cereus G9842] gi|218901315|ref|YP_002449149.1| ribosomal protein L4 [Bacillus cereus AH820] gi|222093881|ref|YP_002527931.1| 50S ribosomal protein l4 [Bacillus cereus Q1] gi|225862163|ref|YP_002747541.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102] gi|227812784|ref|YP_002812793.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684] gi|228898864|ref|ZP_04063146.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222] gi|228905908|ref|ZP_04069805.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200] gi|228912850|ref|ZP_04076497.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228919061|ref|ZP_04082440.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228925364|ref|ZP_04088460.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931613|ref|ZP_04094519.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228937414|ref|ZP_04100060.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228943917|ref|ZP_04106302.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228950659|ref|ZP_04112793.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956552|ref|ZP_04118348.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963211|ref|ZP_04124380.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228970300|ref|ZP_04130959.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976870|ref|ZP_04137282.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407] gi|228983366|ref|ZP_04143579.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229027959|ref|ZP_04184112.1| 50S ribosomal protein L4 [Bacillus cereus AH1271] gi|229041016|ref|ZP_04189779.1| 50S ribosomal protein L4 [Bacillus cereus AH676] gi|229067876|ref|ZP_04201193.1| 50S ribosomal protein L4 [Bacillus cereus F65185] gi|229074172|ref|ZP_04207218.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18] gi|229089242|ref|ZP_04220523.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42] gi|229094833|ref|ZP_04225838.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29] gi|229100910|ref|ZP_04231714.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28] gi|229107797|ref|ZP_04237433.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15] gi|229113787|ref|ZP_04243222.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3] gi|229119773|ref|ZP_04249034.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201] gi|229125628|ref|ZP_04254660.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4] gi|229136957|ref|ZP_04265584.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26] gi|229142917|ref|ZP_04271358.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24] gi|229148520|ref|ZP_04276776.1| 50S ribosomal protein L4 [Bacillus cereus m1550] gi|229153889|ref|ZP_04282019.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342] gi|229159284|ref|ZP_04287308.1| 50S ribosomal protein L4 [Bacillus cereus R309803] gi|229170962|ref|ZP_04298563.1| 50S ribosomal protein L4 [Bacillus cereus MM3] gi|229176711|ref|ZP_04304115.1| 50S ribosomal protein L4 [Bacillus cereus 172560W] gi|229182505|ref|ZP_04309756.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1] gi|229188396|ref|ZP_04315444.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876] gi|229194501|ref|ZP_04321304.1| 50S ribosomal protein L4 [Bacillus cereus m1293] gi|229602888|ref|YP_002864762.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248] gi|254684385|ref|ZP_05148245.1| 50S ribosomal protein L4 [Bacillus anthracis str. CNEVA-9066] gi|254720833|ref|ZP_05182625.1| 50S ribosomal protein L4 [Bacillus anthracis str. A1055] gi|254733588|ref|ZP_05191308.1| 50S ribosomal protein L4 [Bacillus anthracis str. Western North America USA6153] gi|254739508|ref|ZP_05197205.1| 50S ribosomal protein L4 [Bacillus anthracis str. Kruger B] gi|254751227|ref|ZP_05203265.1| 50S ribosomal protein L4 [Bacillus anthracis str. Vollum] gi|254756766|ref|ZP_05208795.1| 50S ribosomal protein L4 [Bacillus anthracis str. Australia 94] gi|296500945|ref|YP_003662645.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171] gi|300119577|ref|ZP_07057121.1| 50S ribosomal protein L4 [Bacillus cereus SJ1] gi|301051848|ref|YP_003790059.1| 50S ribosomal protein L4 [Bacillus anthracis CI] gi|46576767|sp|Q81J41|RL4_BACCR RecName: Full=50S ribosomal protein L4 gi|46576769|sp|Q81VS9|RL4_BACAN RecName: Full=50S ribosomal protein L4 gi|81570005|sp|Q73F95|RL4_BACC1 RecName: Full=50S ribosomal protein L4 gi|81614034|sp|Q6HPQ7|RL4_BACHK RecName: Full=50S ribosomal protein L4 gi|81689839|sp|Q63H89|RL4_BACCZ RecName: Full=50S ribosomal protein L4 gi|166234634|sp|A0R8I1|RL4_BACAH RecName: Full=50S ribosomal protein L4 gi|226730615|sp|B7JKC0|RL4_BACC0 RecName: Full=50S ribosomal protein L4 gi|226730616|sp|B7IT20|RL4_BACC2 RecName: Full=50S ribosomal protein L4 gi|226730617|sp|B7HJ49|RL4_BACC4 RecName: Full=50S ribosomal protein L4 gi|226730618|sp|B7HQU5|RL4_BACC7 RecName: Full=50S ribosomal protein L4 gi|254803712|sp|C3P9Q6|RL4_BACAA RecName: Full=50S ribosomal protein L4 gi|254803713|sp|C3LJ83|RL4_BACAC RecName: Full=50S ribosomal protein L4 gi|254803714|sp|C1ET40|RL4_BACC3 RecName: Full=50S ribosomal protein L4 gi|254803715|sp|B9IZJ5|RL4_BACCQ RecName: Full=50S ribosomal protein L4 gi|29893921|gb|AAP07213.1| LSU ribosomal protein L1E/L4P [Bacillus cereus ATCC 14579] gi|30253623|gb|AAP24165.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames] gi|42735107|gb|AAS39047.1| ribosomal protein L4 [Bacillus cereus ATCC 10987] gi|47500515|gb|AAT29191.1| ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49177072|gb|AAT52448.1| ribosomal protein L4 [Bacillus anthracis str. Sterne] gi|49328274|gb|AAT58920.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978575|gb|AAU20125.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus E33L] gi|118415105|gb|ABK83524.1| LSU ribosomal protein L4P [Bacillus thuringiensis str. Al Hakam] gi|206732852|gb|EDZ50027.1| 50S ribosomal protein L4 [Bacillus cereus AH1134] gi|217062939|gb|ACJ77189.1| ribosomal protein L4 [Bacillus cereus AH187] gi|218162591|gb|ACK62583.1| ribosomal protein L4 [Bacillus cereus B4264] gi|218538801|gb|ACK91199.1| ribosomal protein L4 [Bacillus cereus AH820] gi|218543914|gb|ACK96308.1| ribosomal protein L4 [Bacillus cereus G9842] gi|221237929|gb|ACM10639.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus Q1] gi|225787946|gb|ACO28163.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102] gi|227006772|gb|ACP16515.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684] gi|228588967|gb|EEK46982.1| 50S ribosomal protein L4 [Bacillus cereus m1293] gi|228595070|gb|EEK52841.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876] gi|228600960|gb|EEK58529.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1] gi|228606754|gb|EEK64171.1| 50S ribosomal protein L4 [Bacillus cereus 172560W] gi|228612502|gb|EEK69723.1| 50S ribosomal protein L4 [Bacillus cereus MM3] gi|228624176|gb|EEK80978.1| 50S ribosomal protein L4 [Bacillus cereus R309803] gi|228629570|gb|EEK86267.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342] gi|228634936|gb|EEK91509.1| 50S ribosomal protein L4 [Bacillus cereus m1550] gi|228640538|gb|EEK96927.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24] gi|228646495|gb|EEL02702.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26] gi|228657820|gb|EEL13626.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4] gi|228663674|gb|EEL19253.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201] gi|228669658|gb|EEL25065.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3] gi|228675646|gb|EEL30854.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15] gi|228682489|gb|EEL36562.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28] gi|228688576|gb|EEL42449.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29] gi|228694081|gb|EEL47763.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42] gi|228708942|gb|EEL61069.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18] gi|228715235|gb|EEL67094.1| 50S ribosomal protein L4 [Bacillus cereus F65185] gi|228727313|gb|EEL78507.1| 50S ribosomal protein L4 [Bacillus cereus AH676] gi|228733347|gb|EEL84176.1| 50S ribosomal protein L4 [Bacillus cereus AH1271] gi|228776356|gb|EEM24709.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228782840|gb|EEM31006.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407] gi|228789409|gb|EEM37329.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796469|gb|EEM43908.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228803117|gb|EEM49939.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228809010|gb|EEM55495.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228815750|gb|EEM61986.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822247|gb|EEM68229.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228828041|gb|EEM73769.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834286|gb|EEM79827.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228840586|gb|EEM85848.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228846786|gb|EEM91791.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228853723|gb|EEM98483.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200] gi|228860764|gb|EEN05142.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222] gi|229267296|gb|ACQ48933.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248] gi|296321997|gb|ADH04925.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171] gi|298723049|gb|EFI63947.1| 50S ribosomal protein L4 [Bacillus cereus SJ1] gi|300374017|gb|ADK02921.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI] gi|324324102|gb|ADY19362.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus YBT-020] gi|326937906|gb|AEA13802.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis CT-43] Length = 207 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK ++ + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEE 204 >gi|114327219|ref|YP_744376.1| 50S ribosomal protein L4 [Granulibacter bethesdensis CGDNIH1] gi|122327801|sp|Q0BUP9|RL4_GRABC RecName: Full=50S ribosomal protein L4 gi|114315393|gb|ABI61453.1| LSU ribosomal protein L1E (= L4P) [Granulibacter bethesdensis CGDNIH1] Length = 215 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ ++ LD G + ++IFA P+ I+ARV+ WQ +R G K KG EV+ T Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID E KT+ L + RAL +ALI+DG +D F A+R++ +++LP G Sbjct: 121 KLVVIDTAAGME-KTRDLAAKLRALGWRSALIVDGASVDEGFARASRSLLAVDVLPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++ + +EAL+ R Sbjct: 180 NVYDILNHDVLAITVAGVEALKARL 204 >gi|157804034|ref|YP_001492583.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel] gi|166199857|sp|A8EZL5|RL4_RICCK RecName: Full=50S ribosomal protein L4 gi|157785297|gb|ABV73798.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel] Length = 207 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 122/203 (60%), Gaps = 1/203 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G IS+++DIFA++ + I+ +V+ WQ + G K+K SEV+ T K Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG A GP+ LPKKVR L L HALS+KF ++ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLL 124 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 VID+L + KT +LV + +IDG ++D NF LAA+NI N ++P G NVY Sbjct: 125 VIDSLKLDKPKTSFLVNILNKFQGQSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVY 184 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DI+R ++LS+ A+ LE+R + Sbjct: 185 DIIRHEYVLLSQEAVNVLEERLR 207 >gi|157826062|ref|YP_001493782.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford] gi|166199855|sp|A8GPE9|RL4_RICAH RecName: Full=50S ribosomal protein L4 gi|157800020|gb|ABV75274.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford] Length = 207 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 8 NLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 +L E+ G IS++EDIFA++ + ++ +V+ WQ + G K+K SEV+ T K + Sbjct: 7 SLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFK 66 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTG AR S Q RGGG A GP V LPKKVR L L HALS+KF ++VI Sbjct: 67 QKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLLVI 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVYDI Sbjct: 127 DSLKLDQPKTSALVNILSKFQGKSFFVIDGNEVDTNFSLAAKNIYNTAIVPQIGANVYDI 186 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 +R ++LS+ A+ LE+R + Sbjct: 187 IRYEYVLLSQEAVSVLEERLR 207 >gi|87199271|ref|YP_496528.1| 50S ribosomal protein L4 [Novosphingobium aromaticivorans DSM 12444] gi|109893614|sp|Q2G8X9|RL4_NOVAD RecName: Full=50S ribosomal protein L4 gi|87134952|gb|ABD25694.1| LSU ribosomal protein L4P [Novosphingobium aromaticivorans DSM 12444] Length = 207 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 126/207 (60%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V NLDG KG + +S+D+F L+P+ IL RV+ WQ +R K++ RS+VA T Sbjct: 1 MKVQVLNLDGTAGKGEVELSDDVFGLEPRADILHRVVTWQLENRRGIARKARERSDVART 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K QKG G ARH + F GGGKA GP +L KKVR+L L+ ALS K Sbjct: 61 GKKFGRQKGGGTARHGDRKAPIFIGGGKAHGPRVREFNISLNKKVRALGLKMALSSK-AK 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+DNL + KTK LV + + L+IDG ++ NF AARNI +N+LP Sbjct: 120 AGLVVVDNL-DVDAKTKALVGQLAKANWGKKVLVIDGEGVNDNFAKAARNIVGVNVLPAI 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G NVYDIL+ LVL+++A+E LE RF Sbjct: 179 GANVYDILKHDTLVLTRAAVEKLEARF 205 >gi|329114216|ref|ZP_08242978.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001] gi|326696292|gb|EGE47971.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001] Length = 204 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ ++ LD G ++ ++IFA+ P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + S KT L + ++L ++ALI+D +D +F AARN+P I++LP G Sbjct: 121 KLIVLQS-ASGVDKTSELAKKLKSLGWTSALIVDAA-VDESFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203 >gi|89100348|ref|ZP_01173213.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911] gi|89084969|gb|EAR64105.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911] Length = 207 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 117/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P +L + Q R G K+K RSEVA Sbjct: 1 MPKVALLNQAGSQVGEIELNETIFGIEPNNHVLFEAVVMQRASLRQGTHKTKIRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V++NL + KTK L + +I LD N L+ARNIP + ++ G Sbjct: 121 ENILVLENLALETPKTKDFKGVLTGLSVDKKALIVTADLDENVALSARNIPGVTVVTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLSHDKLIMTKAAVEKVEE 204 >gi|289449461|ref|YP_003475783.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184008|gb|ADC90433.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 207 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 127/206 (61%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V NLDG G I +S+ +F ++P Q ++ +V++ Q +R G +K RSEV+ Sbjct: 1 MAKVDVYNLDGAVIGQIELSDAVFGIEPNQSVMHQVVKNQLANRRQGTGSTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G + + QKGTGRARH S +Q+ GGG FGP P + + KKVR LA++ ALS K Sbjct: 61 GKRPWRQKGTGRARHGSTRSAQYVGGGIIFGPKPRDYHYTVSKKVRRLAIKSALSTKLQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N E KTK VT + L++++ +++ + + N +LAARNI + L Sbjct: 121 KQLIVVENFELAEAKTKNFVTALKKLNVTDRVLVVENEKNVNLELAARNIAKVQLSRANT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+D+L+ L++SK+A+E +++ + Sbjct: 181 INVFDLLKNEVLLISKAAVEKIQEVY 206 >gi|167463901|ref|ZP_02328990.1| 50S ribosomal protein L4 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381125|ref|ZP_08055128.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154701|gb|EFX46972.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +S+ +F ++P +L + Q R G K+KGRSEV Sbjct: 1 MPKVALYNVQGTQVGEVELSDAVFGIEPHVHVLHEAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D+L + KTK L + ++ + D N +ARNIP + L G Sbjct: 121 NEIVVLDDLAMAQPKTKEFAAILTNLKVERKALVVASEHDENVARSARNIPGVKFLAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLGYDKLIITKDAVQKVEE 204 >gi|85709056|ref|ZP_01040122.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1] gi|85690590|gb|EAQ30593.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1] Length = 207 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G I +S+D+F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKASGDIELSDDVFGVEPRADILHRVVTWQLENRRATARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + F GGGKA G +L KK+R+L L+ ALS K + Sbjct: 61 KKFGAQKGSGGARHGDRGAPIFIGGGKAHGARKRDFNQSLNKKIRALGLKMALSTK-AKD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L KE KT+ L F + L+IDG ++ F+ AA N+ +N+LP G Sbjct: 120 GLVVLDSLELKEAKTQALKGHFDKHGFAGKVLVIDGESVNDGFKQAAGNLKGVNVLPAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L+L+K A+E LE RF Sbjct: 180 ANVYDILNHDTLILTKDAVEKLEARF 205 >gi|326388198|ref|ZP_08209801.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM 19370] gi|326207364|gb|EGD58178.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM 19370] Length = 207 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LDG G + +S+ +F L+P+ IL RV+ WQ +R K++ RS+VA TG Sbjct: 1 MKVQVLTLDGTAAGDVELSDAVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP +L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGPRVREFNISLNKKVRALGLKMALSAK-AKT 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KTK LV +F L++DG ++ F AARNI +N+LP G Sbjct: 120 GLVVVDTLDLADAKTKVLVGKFAKAGFGKKVLVVDGEAVNEGFARAARNIVGVNVLPAIG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARF 205 >gi|67458671|ref|YP_246295.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2] gi|75536864|sp|Q4UMS8|RL4_RICFE RecName: Full=50S ribosomal protein L4 gi|67004204|gb|AAY61130.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2] Length = 207 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 119/201 (59%), Gaps = 1/201 (0%) Query: 8 NLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T K + Sbjct: 7 SLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFK 66 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTG AR S Q RGGG A GP LPKKVR L L HALS+KF ++VI Sbjct: 67 QKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLLVI 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVYDI Sbjct: 127 DSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIGANVYDI 186 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 +R ++LS+ A+ LE+R + Sbjct: 187 IRHEYVLLSQEAVSVLEERLR 207 >gi|295398289|ref|ZP_06808331.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC 11563] gi|294973428|gb|EFG49213.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC 11563] Length = 207 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 123/204 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I++++++FA++P + + V+ Q R G K KGRSEV+ Sbjct: 1 MANITLFKQDGSQAGEITLNDEVFAIEPNENAIYDVVIMQQASLRQGTHKVKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG+AFGP P + LP+KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGRAFGPTPRSYAYKLPRKVRRLALRSALSTKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V+D L + KTK L + N +++ + + N QL+ARN+PN+ ++ Sbjct: 121 NNFIVVDELAFETPKTKLFQEVLNNLQVENKVLVVINKDNDNAQLSARNLPNVKVVDENN 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV+D++ K++++K+A+ +E+ Sbjct: 181 VNVFDLVNSEKVIITKAALSNVEE 204 >gi|330993847|ref|ZP_08317779.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1] gi|329759115|gb|EGG75627.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1] Length = 204 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ LD G S+ ++IFA P+ ILARV+ WQ ++R G K KG E++ T Sbjct: 1 MDYEIKTLDNGSAGTASLPDEIFAATPRPDILARVVHWQLAKRRAGTHKVKGMGEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLIFALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + K+ L + + L ++ALI+D ++ NF AARN+P I++LP G Sbjct: 121 KLVVLD-AATASGKSAELAKKLKVLGWTSALIVDAA-VEENFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203 >gi|296533988|ref|ZP_06896504.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC 49957] gi|296265654|gb|EFH11763.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC 49957] Length = 206 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 120/206 (58%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LD G I + + +FA P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MQLPVITLDNGQAGEIDLPDALFAAAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV ++L KKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEG 120 Query: 122 DIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + + KT + ++ +AL +AL++D Q++ F A RN+ N+N+LP G Sbjct: 121 KLVVLDTAALGADAKTSAMASKVKALGWKSALVVD-AQVEDGFGRAVRNLKNVNVLPSMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ L +++ A++AL++R Sbjct: 180 ANVYDILKHDVLAVTRQAVDALKERL 205 >gi|162149173|ref|YP_001603634.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|209545083|ref|YP_002277312.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|189029506|sp|A9H3R2|RL4_GLUDA RecName: Full=50S ribosomal protein L4 gi|161787750|emb|CAP57346.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|209532760|gb|ACI52697.1| ribosomal protein L4/L1e [Gluconacetobacter diazotrophicus PAl 5] Length = 204 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ LD G + ++IF + P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MDYEIKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + +T L + +AL +ALI+D ++ NF AARN+P I+ LP G Sbjct: 121 KLVVLD-AATASGRTSELAAKVKALGWKSALIVD-ATVEENFGRAARNLPKIDALPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203 >gi|58336631|ref|YP_193216.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM] gi|227903188|ref|ZP_04020993.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796] gi|75433039|sp|Q5FM89|RL4_LACAC RecName: Full=50S ribosomal protein L4 gi|58253948|gb|AAV42185.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM] gi|227868993|gb|EEJ76414.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796] Length = 205 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLI--VSDDNNVQLSARNLAKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEE 202 >gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] gi|256849182|ref|ZP_05554615.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US] gi|262047198|ref|ZP_06020156.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US] gi|293380378|ref|ZP_06626449.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1] gi|295692161|ref|YP_003600771.1| 50S ribosomal protein l4 [Lactobacillus crispatus ST1] gi|227861138|gb|EEJ68787.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] gi|256713958|gb|EEU28946.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US] gi|260572443|gb|EEX29005.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US] gi|290923061|gb|EFD99992.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1] gi|295030267|emb|CBL49746.1| 50S ribosomal protein L4 [Lactobacillus crispatus ST1] Length = 205 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNGLNADGKVLI--VSDDNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L + A++ +E+ Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEE 202 >gi|315037531|ref|YP_004031099.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112] gi|325956004|ref|YP_004286614.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC] gi|312275664|gb|ADQ58304.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112] gi|325332569|gb|ADZ06477.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC] gi|327182827|gb|AEA31274.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1118] Length = 205 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + +PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLI--VTDDNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+LS+ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILSQDAVKKIEE 202 >gi|319654869|ref|ZP_08008944.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2] gi|317393432|gb|EFV74195.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2] Length = 207 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 118/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ IF ++P Q +L + Q R G K+K RSEVA Sbjct: 1 MPKVALFNQSGSKVGDIELNDAIFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V++ L + KTK L + + +I LD N L+ARNIP + ++ G Sbjct: 121 ENILVLEGLAFETPKTKDFKGVLTGLSVDSKALIVTADLDENVALSARNIPGVTVVSASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I V D+L KL+++K+A+E +E+ Sbjct: 181 ITVLDVLNHDKLIMTKAAVEKVEE 204 >gi|85374464|ref|YP_458526.1| 50S ribosomal protein L4 [Erythrobacter litoralis HTCC2594] gi|122544174|sp|Q2N9B2|RL4_ERYLH RecName: Full=50S ribosomal protein L4 gi|84787547|gb|ABC63729.1| ribosomal protein L4 [Erythrobacter litoralis HTCC2594] Length = 207 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G + + + +F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKAAGDVELDDAVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K QKG+G ARH + F GGGKA G +L KK+R+L L+ ALS K + Sbjct: 61 AKFGRQKGSGNARHGDRGAPIFIGGGKAHGARKRDFNPSLNKKIRALGLKMALSSK-AKD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L K+ KTK L F +A L+IDG ++ F AA N+P +N+LP G Sbjct: 120 GLVVVDSLDLKDAKTKVLKGHFDKAGWNGKVLVIDGESVNEGFSKAAGNLPGVNVLPAMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205 >gi|294496986|ref|YP_003560686.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551] gi|294346923|gb|ADE67252.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551] Length = 207 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I + + +F ++P +L + Q +R G SK K RSEV Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V++ L KTK +V + L + ++ L+ N L+ARNIP + ++ G Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++V D++ KLV++K A+E +E+ Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEE 204 >gi|218779761|ref|YP_002431079.1| 50S ribosomal protein L4 [Desulfatibacillum alkenivorans AK-01] gi|226730651|sp|B8FET4|RL4_DESAA RecName: Full=50S ribosomal protein L4 gi|218761145|gb|ACL03611.1| ribosomal protein L4/L1e [Desulfatibacillum alkenivorans AK-01] Length = 206 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE I ++++IF ++ + +L V+ Q +R G K RS+V + Sbjct: 1 MAKVEVCNMSGEKVSEIDLADEIFGVEVKGSVLHEVVVMQLANRRAGTVCVKNRSDVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTGRAR RGGG FGP P + +PKKVR AL+ ALS K Sbjct: 61 TRKLYRQKGTGRARKGDIKSPVLRGGGVVFGPHPRDYSYKVPKKVRKAALKMALSSKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+DN+ E KTK A+ + ALI+ + ++N +L+ARN+ + ++P G Sbjct: 121 NSLKVVDNMDLPEIKTKAFAEAMAAMGVDTALIVTTGE-EKNLELSARNVKGVKVMPTAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ L+L++ AIEA+E R Sbjct: 180 LNVYDILKYGNLILAQGAIEAIEGRL 205 >gi|241889133|ref|ZP_04776437.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379] gi|241864382|gb|EER68760.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379] Length = 207 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 112/200 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + +E +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ +++L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NV DILR +K+V +K A+E Sbjct: 181 LNVLDILRSNKVVFTKDAVE 200 >gi|169830029|ref|YP_001700187.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41] gi|226730684|sp|B1HMX9|RL4_LYSSC RecName: Full=50S ribosomal protein L4 gi|168994517|gb|ACA42057.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41] Length = 207 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK + L L + LD N L+ARNIP + +L G Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L K+V +KSA+E +E+ Sbjct: 181 INVLDLLGHEKVVFTKSAVEKVEE 204 >gi|256844430|ref|ZP_05549916.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN] gi|256613508|gb|EEU18711.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN] Length = 205 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSILNGLNADGKVLI--VSDDNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L + A++ +E+ Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEE 202 >gi|295702351|ref|YP_003595426.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319] gi|294800010|gb|ADF37076.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319] Length = 207 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I + + +F ++P +L + Q +R G SK K RSEV Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V++ L KTK +V + L + ++ L+ N L+ARNIP + ++ G Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++V D++ KLV++K A+E +E+ Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEE 204 >gi|299541933|ref|ZP_07052256.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1] gi|298725671|gb|EFI66312.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1] Length = 207 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK + L L + LD N L+ARNIP + +L G Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L K+V +KSA+E +E+ Sbjct: 181 INVLDLLGHDKVVFTKSAVEKVEE 204 >gi|251799641|ref|YP_003014372.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2] gi|247547267|gb|ACT04286.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2] Length = 207 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G + G I +++ +F ++P +L + Q +R G K+KGRSEV Sbjct: 1 MPKVTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L ++ D N L+ARNIP + + G Sbjct: 121 NEIVVLDQLTFAAPKTKEFAAILNNLKADRKALVVLPAYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KL+++K A+E +++ F Sbjct: 181 INVLDVLVHDKLIITKEAVEKVQEVF 206 >gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor] gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor] Length = 294 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 87 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 146 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 147 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 206 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R + D L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 207 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 266 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV++++AI + +R Sbjct: 267 SILQHDTLVMTRAAINRIVERM 288 >gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor] gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor] Length = 333 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 126 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 185 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 186 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 245 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R + D L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 246 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 305 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV+S++AI + +R Sbjct: 306 SILQHDTLVMSRAAINRIVERM 327 >gi|296131837|ref|YP_003639084.1| ribosomal protein L4/L1e [Thermincola sp. JR] gi|296030415|gb|ADG81183.1| ribosomal protein L4/L1e [Thermincola potens JR] Length = 206 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 121/204 (59%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G I + +++F ++P +G++ V+ Q +R+G + +K R+EV+ Sbjct: 1 MPKVALYNIKGEQVGEIELKDEVFGIEPNEGLVHDVVVMQLANRRVGTASTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +PKK R LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPKPRSFNYTMPKKARRLALKSVLSSKVSD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L + KTK + L A+++ +D+N +ARNIP + L G Sbjct: 121 GNIIVLDTLEMAQPKTKEMAEILNRLKAKKAVVVT-ADVDQNVIKSARNIPGVTPLTASG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD++ KLV++K A+ +E+ Sbjct: 180 LNVYDLVNHEKLVITKDAVAKVEE 203 >gi|253577180|ref|ZP_04854500.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843424|gb|EES71452.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str. D14] Length = 207 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 112/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +++ +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALFNISGSQVGEVELNDAVFGIEPNTHVLHEAVVMQRASLRFGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L KTK L + ++ D N L+ARNIP + + G Sbjct: 121 QDIIVLDALAMNAPKTKEFAAILNNLKVERKALVVAPDYDDNIALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLTHDKLIITKEAVQKVEE 204 >gi|158520726|ref|YP_001528596.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3] gi|226730653|sp|A8ZV58|RL4_DESOH RecName: Full=50S ribosomal protein L4 gi|158509552|gb|ABW66519.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3] Length = 205 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 123/207 (59%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N++GE + + IF ++ + +L V++ Q R+R G + +KGRS+VA + Sbjct: 1 MAVVDIKNMNGETVSQAELPDSIFDVEVKSSVLHEVVKMQLARRRSGTASTKGRSDVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 +K++ QKGTGRAR +GGG FGP P +++PKKVR LAL+ AL+ K Sbjct: 61 RAKLFRQKGTGRARRGDVKSPLLKGGGVVFGPHPRSFDYSVPKKVRKLALKMALTSKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQ 179 N + V+D KTK V AL +NAL+I DG + + +ARN+P + +L + Sbjct: 121 NTLTVVDQFRFDRIKTKDFVGAINALGAANALVISDGSE---TLEKSARNVPKVKVLKCE 177 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL+ LVL ++AI+ +E R Sbjct: 178 GLNVYDILKYKNLVLPEAAIKMIEGRL 204 >gi|239948318|ref|ZP_04700071.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|241563414|ref|XP_002401694.1| ribosomal protein L4, putative [Ixodes scapularis] gi|215501886|gb|EEC11380.1| ribosomal protein L4, putative [Ixodes scapularis] gi|239922594|gb|EER22618.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 207 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 1/201 (0%) Query: 8 NLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T K + Sbjct: 7 SLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKPFK 66 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTG AR S Q RGGG A GP LPKKVR L L HALS+KF ++VI Sbjct: 67 QKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLLVI 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D+L + KT LV + +ID ++D NF LAA+NI N ++P G NVYDI Sbjct: 127 DSLKLDKPKTSALVNILNKFQGKSFFVIDRNEVDINFSLAAKNIYNTVIVPQIGANVYDI 186 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 +R ++LS+ A+ LE+R + Sbjct: 187 IRHEYVLLSQEAVSVLEERLR 207 >gi|329768274|ref|ZP_08259775.1| 50S ribosomal protein L4 [Gemella haemolysans M341] gi|328837473|gb|EGF87102.1| 50S ribosomal protein L4 [Gemella haemolysans M341] Length = 207 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 111/200 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + SE +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEASEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ +++L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NV DIL +K+V +K A+E Sbjct: 181 LNVLDILGSNKVVFTKDAVE 200 >gi|161506874|ref|YP_001576828.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571] gi|172048368|sp|A8YXK6|RL4_LACH4 RecName: Full=50S ribosomal protein L4 gi|160347863|gb|ABX26537.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571] Length = 205 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLI--VSDDNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEE 202 >gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays] gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays] Length = 293 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 86 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 145 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG+ARH + +QFRGG GP P L KKVR L L+ ALS + +++ Sbjct: 146 PQKGTGKARHGTLRGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLI 205 Query: 126 IDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R +D S L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 206 FEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 265 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV++++AI + +R Sbjct: 266 SILQHDTLVMTRAAINRIVERM 287 >gi|260102356|ref|ZP_05752593.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075] gi|260083800|gb|EEW67920.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075] gi|328463365|gb|EGF35038.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463] Length = 205 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLI--VSDDNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEE 202 >gi|323465825|gb|ADX69512.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10] Length = 205 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETVIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLI--VSDDNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEE 202 >gi|319938506|ref|ZP_08012900.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1] gi|319806422|gb|EFW03089.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1] Length = 207 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVL-RWQSWRKRIGCSKSKGRSEVA 58 M++++V N +G+ ++E +F ++P Q I VL + SWR+ G K K R+EV Sbjct: 1 MLKVAVYNQEGKQVKDTELNELVFGIEPNNQAIFDMVLLQRASWRQ--GTHKVKNRTEVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 59 GGGRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYTFKLNRKVRQLALKSALSQKV 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N++ V+D + KTK ++ L+ + +I +++ N L+ARNIP + ++ Sbjct: 119 IDNEMTVLDTITLNAPKTKDMIKVLENLEANRKTLIVMDEVNENVTLSARNIPGVKVIDS 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 +G+NVYDIL C+KLV+++ AI+A+E+ Sbjct: 179 KGLNVYDILDCTKLVITEGAIKAVEE 204 >gi|304405615|ref|ZP_07387274.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9] gi|304345654|gb|EFM11489.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9] Length = 207 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 117/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +++ +F ++P +L + Q +R G K+KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELADSVFGIQPNTHVLHSAVLLQQAAERRGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LP+KVR LA++ ALS K S Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPRKVRRLAIKSALSTKVIS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L ++ ++ + N L+ARNIP + + +G Sbjct: 121 NEIVVLDQLALATPKTKEFAAILNNLKVARKALVVTANYEDNVALSARNIPGVKFVAAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L+ +L+++K A+E +++ Sbjct: 181 INVLDVLQYDRLIITKEAVEKVQE 204 >gi|56961933|ref|YP_173655.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16] gi|81601105|sp|Q5WLR1|RL4_BACSK RecName: Full=50S ribosomal protein L4 gi|56908167|dbj|BAD62694.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16] Length = 207 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 120/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N G G I +++++F ++P + +L + Q R G K+KGRSEV Sbjct: 1 MPKVSLFNQTGSQVGEIELADNVFGVEPNESVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D+L + KTK + +L + + ++ + N L+ARN+P I L G Sbjct: 121 SELVVLDDLKLEAIKTKAMKDVLASLSVDSKALVVTADYNENVALSARNLPGITFLTADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L+ KLV++K A+E +E+ Sbjct: 181 VNVLDLLKHDKLVITKDAVEKVEE 204 >gi|218659827|ref|ZP_03515757.1| 50S ribosomal protein L4 [Rhizobium etli IE4771] Length = 117 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/106 (64%), Positives = 87/106 (82%) Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161 PKKVR+L +R ALS K ++D++VIDNLV+ E KTK L + F L L+NAL I G +LD Sbjct: 12 PKKVRALGIRDALSAKIKADDVIVIDNLVAAEAKTKALASAFETLGLTNALFIGGAELDG 71 Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 NF+LAA+NIPNI++LP+QGINVYDI+R KLVLSK+A+EALE+RFK Sbjct: 72 NFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERFK 117 >gi|227894521|ref|ZP_04012326.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047] gi|227863680|gb|EEJ71101.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047] Length = 205 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDSVVFEAIIRQRAGKRQGTSKVKNRSVVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 KDLIVLDKLTMSAPKTKELVSMLSSLNADGKVLI--VSDDNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEE 202 >gi|229542202|ref|ZP_04431262.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1] gi|229326622|gb|EEN92297.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1] Length = 207 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 117/200 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G + +++ +F ++P + +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK + + L + ++ L+ N L+ARNIP I ++ G Sbjct: 121 NNILVLDALNFDAPKTKDFIAVLKNLSVDKKALVVTDGLNENVVLSARNIPGITVVEATG 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NV D++ +L+++KSA+E Sbjct: 181 VNVLDVVNHDQLIMTKSAVE 200 >gi|114764143|ref|ZP_01443381.1| 50S ribosomal protein L4 [Pelagibaca bermudensis HTCC2601] gi|114543295|gb|EAU46311.1| 50S ribosomal protein L4 [Roseovarius sp. HTCC2601] Length = 177 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + ++++IF L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR L L+ ALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRQLGLKLALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++I+N + KTK L ++ + L AL+IDG +++ NF AA NI +++LP Sbjct: 121 SLVIIEN-ADADGKTKTLASQVKNLGWKRALVIDGAEVNENFARAAANIDGLDVLP 175 >gi|238650971|ref|YP_002916827.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic] gi|259491568|sp|C4K2H8|RL4_RICPU RecName: Full=50S ribosomal protein L4 gi|238625069|gb|ACR47775.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic] Length = 207 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 1/203 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T K Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K ++ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVY Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVY 184 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DI+R ++LS+ A+ LE+R + Sbjct: 185 DIIRHEYVLLSQEAVSVLEERLR 207 >gi|15892928|ref|NP_360642.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7] gi|34581370|ref|ZP_00142850.1| 50S ribosomal protein L4 [Rickettsia sibirica 246] gi|46577283|sp|Q92GW7|RL4_RICCN RecName: Full=50S ribosomal protein L4 gi|15620120|gb|AAL03543.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7] gi|28262755|gb|EAA26259.1| 50S ribosomal protein L4 [Rickettsia sibirica 246] Length = 207 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 1/203 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T K Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K ++ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVY Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVY 184 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DI+R ++LS+ A+ LE+R + Sbjct: 185 DIIRHEYVLLSQEAVSVLEERLR 207 >gi|229587008|ref|YP_002845509.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5] gi|259491567|sp|C3PPA6|RL4_RICAE RecName: Full=50S ribosomal protein L4 gi|228022058|gb|ACP53766.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5] Length = 207 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 117/201 (58%), Gaps = 1/201 (0%) Query: 8 NLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T K + Sbjct: 7 SLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFK 66 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K ++VI Sbjct: 67 QKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVI 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVYDI Sbjct: 127 DSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVYDI 186 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 +R ++LS+ A+ LE+R + Sbjct: 187 IRHEYVLLSQEAVSVLEERLR 207 >gi|157828859|ref|YP_001495101.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933586|ref|YP_001650375.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Iowa] gi|166199858|sp|A8GT68|RL4_RICRS RecName: Full=50S ribosomal protein L4 gi|189042881|sp|B0BUQ9|RL4_RICRO RecName: Full=50S ribosomal protein L4 gi|157801340|gb|ABV76593.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908673|gb|ABY72969.1| LSU ribosomal protein L1E (= L4P) [Rickettsia rickettsii str. Iowa] Length = 207 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 1/203 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T K Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K ++ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G NVY Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANVY 184 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DI+R ++LS+ A+ LE+R + Sbjct: 185 DIIRHEYVLLSQEAVSVLEERLR 207 >gi|295425651|ref|ZP_06818338.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus DSM 11664] gi|295064667|gb|EFG55588.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus DSM 11664] Length = 205 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 122/204 (59%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q +R G SK K RS V Sbjct: 1 MANLKVIDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGQRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK V+ +L + + +++ D+N QL+A+N+P + ++PV G Sbjct: 121 KNLIVLDKLTMSAPKTKEFVSILDSLKVESKVLV--VSDDKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYDKLILTQDAVKKIEE 202 >gi|317496189|ref|ZP_07954549.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424] gi|316913764|gb|EFV35250.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424] Length = 207 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 110/200 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + ++ +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ ++ L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALETLTFDSIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NV DIL +K+V +K A+E Sbjct: 181 LNVLDILGSNKVVFTKDALE 200 >gi|293375390|ref|ZP_06621671.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis PC909] gi|325844472|ref|ZP_08168199.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1] gi|292645943|gb|EFF63972.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis PC909] gi|325489146|gb|EGC91530.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1] Length = 207 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 122/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P + + + Q R G K+K R+EV Sbjct: 1 MPQVALYNQQGAQVGEIVLNEAIFGIEPHKQAMFDAVIMQRASMRQGTHKTKTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + L KKVR LAL+ AL+ K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWRGGGIVFGPVPRSYAYKLNKKVRRLALKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D LV + KTK ++ AL++++ ++ + + +L+ RNIP + +L V Sbjct: 121 NEIVVLDQLVFEAPKTKQMINVLGALNVTSKALVVTAEENAAVELSTRNIPGVKVLTVSQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L +KLV+++ A++ +E+ Sbjct: 181 LNVLDLLDATKLVITQDAVKKIEE 204 >gi|56551414|ref|YP_162253.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761061|ref|ZP_04759150.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752973|ref|YP_003225866.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81598314|sp|Q5NQ63|RL4_ZYMMO RecName: Full=50S ribosomal protein L4 gi|56542988|gb|AAV89142.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ZM4] gi|241374680|gb|EER64141.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552336|gb|ACV75282.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 207 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V++LD KG I +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA +G Sbjct: 1 MKVEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G + +L KKVR+L LR ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VI+ L E KTK L + ++L L++DG ++ NF A+ N+ +++LP G Sbjct: 121 TLVVIEAL-DVEAKTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAVG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE R Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARL 205 >gi|288554726|ref|YP_003426661.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4] gi|288545886|gb|ADC49769.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4] Length = 207 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I +S+ IF ++P Q +L + Q R G K+KGRSEV Sbjct: 1 MPKVAVFNQAGSQVGDIELSDSIFGIEPNQSVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKLKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+DNL KTK + L + + ++ + L+ RN+P + + +G Sbjct: 121 AEIVVLDNLQLDAPKTKDMANVLNGLSVDSKALVVTADYNETVALSTRNLPGVTFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L+ KLV++K A+ +E+ Sbjct: 181 VNVLDVLKHDKLVITKDAVAKVEE 204 >gi|329770039|ref|ZP_08261434.1| 50S ribosomal protein L4 [Gemella sanguinis M325] gi|328837350|gb|EGF86980.1| 50S ribosomal protein L4 [Gemella sanguinis M325] Length = 207 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 110/200 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + ++ +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ ++ L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALETLAFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NV DIL +K+V +K A+E Sbjct: 181 LNVLDILGSNKVVFTKDALE 200 >gi|94987403|ref|YP_595336.1| 50S ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00] gi|166234679|sp|Q1MPR2|RL4_LAWIP RecName: Full=50S ribosomal protein L4 gi|94731652|emb|CAJ55015.1| ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00] Length = 206 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N E+ G I++S IF ++ Q IL V+R Q KR G K R V+ Sbjct: 1 MAIVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGGG FGP P + KK+RSLAL ALS +F Sbjct: 61 GAKPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++VIDN+V E KTK+ V L L ALI+ + L+ RN+PN+ LL Sbjct: 121 ENLIVIDNIVLPEIKTKHFVGVANILGLHKALIVAPVE-STQLLLSMRNVPNVKLLTYDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYDIL+ +LVL + A++ +E R K Sbjct: 180 LNVYDILKYKQLVLLEGAVQHIEARLK 206 >gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group] gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa Japonica Group] gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group] Length = 286 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 117/202 (57%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 79 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 138 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 139 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 198 Query: 126 IDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V ++ L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 199 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 258 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV++++AI + +R Sbjct: 259 SILQHDTLVMTRNAINRIVERM 280 >gi|311070764|ref|YP_003975687.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942] gi|310871281|gb|ADP34756.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942] Length = 207 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 117/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I ++ L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLTLDAVKTKEMAAILKGLSVEKKALIVTADVNETVSLSARNIPGVTVVQADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17] gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17] Length = 208 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V++ G D I +++++F L P+ IL RV+ WQ ++R ++ R++VA +G Sbjct: 1 MKVKVQSFAGTDAADIELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG G ARH + F GGGKA G L KKVR+L L+ ALS + Sbjct: 61 KKLGRQKGGGVARHGDRRAPVFIGGGKAHGARVRDFNPGLNKKVRALGLKMALSSHAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK L L AL+IDG ++ +F LAA N+ IN+LP G Sbjct: 121 SLIVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDGDAVETSFALAAGNLKEINVLPAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL++SA+E LE RF Sbjct: 181 ANVYDILKHDTLVLTRSAVEKLEARF 206 >gi|258512669|ref|YP_003186103.1| 50S ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479395|gb|ACV59714.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 206 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILA-RVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++V N G+ G I ++E IF + ++ VL++ + R+R G K+K R+EV+ Sbjct: 1 MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRR-GTHKTKTRAEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q+RGGG GPVP +PKKVR AL ALS K Sbjct: 60 GGRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V++ L + KTK +V R L++ ALIIDG + + L+ARNIPN+ + Sbjct: 120 EGKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIIDG-EKKQPVYLSARNIPNVKYMEAA 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY++LR LVL+K A++ +E+ F Sbjct: 179 GLNVYELLRHDHLVLTKDAVQKVEEVF 205 >gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group] Length = 353 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 117/202 (57%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 146 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 205 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 206 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 265 Query: 126 IDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V ++ L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 266 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 325 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV++++AI + +R Sbjct: 326 SILQHDTLVMTRNAINRIVERM 347 >gi|308070974|ref|YP_003872579.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681] gi|310644201|ref|YP_003948960.1| 50S ribosomal protein l4 [Paenibacillus polymyxa SC2] gi|305860253|gb|ADM72041.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681] gi|309249152|gb|ADO58719.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2] Length = 207 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 112/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G I +++ +F ++P + +L + Q R G K KGRSEV Sbjct: 1 MPKVALFNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L +I D N L+ARNIP + + G Sbjct: 121 NEIIVLDALTLNGPKTKEFAAILNNLKADRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLGHDKLIITKEAVQKVEE 204 >gi|315649698|ref|ZP_07902782.1| ribosomal protein L4/L1e [Paenibacillus vortex V453] gi|315274886|gb|EFU38262.1| ribosomal protein L4/L1e [Paenibacillus vortex V453] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + ++E +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELNEAVFGIEPNTHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D L KTK L + +I D N L+ARNIP + + G Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L +L+++K A++ +E+ Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEE 204 >gi|261409520|ref|YP_003245761.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10] gi|329922057|ref|ZP_08277850.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5] gi|261285983|gb|ACX67954.1| ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10] gi|328942440|gb|EGG38704.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + ++E +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELNEAVFGIEPNAHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D L KTK L + +I D N L+ARNIP + + G Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L +L+++K A++ +E+ Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEE 204 >gi|218290004|ref|ZP_03494181.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1] gi|218239989|gb|EED07176.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1] Length = 206 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILA-RVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++V N G+ G I ++E IF + ++ VL++ + R+R G K+K R+EV+ Sbjct: 1 MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRR-GTHKTKTRAEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q+RGGG GPVP +PKKVR AL ALS K Sbjct: 60 GGRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V++ L + KTK +V R L++ ALI+DG + + L+ARNIPN+ + Sbjct: 120 EGKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIVDG-EKKQPVYLSARNIPNVKYMEAA 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY++LR LVL+K A++ +E+ F Sbjct: 179 GLNVYELLRHDHLVLTKDAVQKVEEVF 205 >gi|15604504|ref|NP_221022.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Madrid E] gi|6226007|sp|Q9ZCQ6|RL4_RICPR RecName: Full=50S ribosomal protein L4 gi|3861198|emb|CAA15098.1| 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii] gi|292572286|gb|ADE30201.1| 50S ribosomal protein L4 [Rickettsia prowazekii Rp22] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 5/205 (2%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G I++++DIFA++ + I+ +V+ WQ + G K+K SEV+ T K Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFCSND 122 + QKGTG AR S Q RGGG + GP + HA LPKKVR L L HALS+K+ Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGISHGPK--VRSHAIKLPKKVRKLGLIHALSEKYAEEK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++ID+L + KT LV + +IDG ++D NF LA +NI N ++P G N Sbjct: 123 LLIIDSLKLDKPKTSILVNLLSKFQGQSFFVIDGNKVDINFSLATKNIYNTLIVPQIGAN 182 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 VYDI+R ++LS+ A+ LE+R + Sbjct: 183 VYDIIRHEYVLLSQEAVSFLEERLR 207 >gi|52078610|ref|YP_077401.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|52783972|ref|YP_089801.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|319649115|ref|ZP_08003323.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2] gi|81667231|sp|Q65PA6|RL4_BACLD RecName: Full=50S ribosomal protein L4 gi|52001821|gb|AAU21763.1| ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|52346474|gb|AAU39108.1| RplD [Bacillus licheniformis ATCC 14580] gi|317388815|gb|EFV69634.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 118/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I +++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK + + L + +I + +L+ARN+P + ++ G Sbjct: 121 NNLIVLEDLNLDAVKTKEMAAILKGLSIEKKALIVTADANETVELSARNLPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KLV++K+A+E +E+ Sbjct: 181 INVLDVVGHEKLVMTKAAVEKVEE 204 >gi|308272978|emb|CBX29582.1| 50S ribosomal protein L4 [uncultured Desulfobacterium sp.] Length = 207 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V NL+GE + +++ IF + + +L V+ Q +R G + K RS+V + K Sbjct: 4 IDVYNLNGEKVSQLELTDSIFNIPVKPSVLHEVVTMQLACRRAGSASVKHRSDVRGSTRK 63 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 ++ QKGTGRAR RGGG FGP P + +PKK++ LAL+ ALS K +N++ Sbjct: 64 LFRQKGTGRARRGDIKSPLLRGGGSIFGPDPRSYSYKVPKKIKKLALKMALSSKTINNNL 123 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +VID +E KTK + L + ALII +L+ + +L++RN+P+I ++ +G+NV Sbjct: 124 IVIDKFELEEAKTKNFIAVINTLKIKKALIITE-KLNESLELSSRNVPDIKVMRFEGLNV 182 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 YDIL+ KL+L +++I+ +E R Sbjct: 183 YDILKYDKLILLETSIKGIEGRL 205 >gi|328725484|ref|XP_003248496.1| PREDICTED: 50S ribosomal protein L4-like [Acyrthosiphon pisum] Length = 267 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +DG G I +++ +F ++P Q +L + Q R G K RS V Sbjct: 61 MANIDVLKVDGSKSGSIELNDSVFGIEPNQHVLFEAVNLQRASLRQGTHAVKNRSAVRGG 120 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 121 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSSKVSG 180 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V++ KTK L+LS ++ +D N +L+ARNIP + ++ Q Sbjct: 181 NELTVLEAFNFDAPKTKEFKNVMSNLELSKKVLFIVDTVDSNVELSARNIPGVKVIDAQS 240 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DIL SK+V++K+A++ +E+ Sbjct: 241 LNVLDILDSSKVVITKAAVDKVEE 264 >gi|225849547|ref|YP_002729712.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense Az-Fu1] gi|225643372|gb|ACN98422.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense Az-Fu1] Length = 208 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N E G +++ EDIF + QG + V++W KR G +K K R+EVA + Sbjct: 1 MEFNVVNNKNEIVGKVNLKEDIFQTQVNQGTVWEVIKWHLATKRAGTAKVKTRAEVAGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRARH + F GGG A GP P +ALPKKVR L+ L+ K +N Sbjct: 61 RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYYALPKKVRKKVLKGVLTYKLNNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++V+++ + KTK V + L N+ L++ +L+ N + RNIP + +L + Sbjct: 121 ELIVVEDFNFDQPKTKNAVEVLKNFGLENSKVLLVLPEKLE-NVIKSFRNIPKVKILVSE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+N YDIL K+++ KSA+E +++R Sbjct: 180 GLNSYDILNSEKVIIFKSALEKIQERL 206 >gi|15612698|ref|NP_241001.1| 50S ribosomal protein L4 [Bacillus halodurans C-125] gi|7674304|sp|Q9Z9L3|RL4_BACHD RecName: Full=50S ribosomal protein L4 gi|4512405|dbj|BAA75272.1| rplD homologue (identity of 79% to B. subtilis ) [Bacillus halodurans] gi|10172747|dbj|BAB03854.1| 50S ribosomal protein L4 [Bacillus halodurans C-125] Length = 207 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 118/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +S+ +F ++P + +L + Q R G K+K RSEV Sbjct: 1 MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+++L + KTK + + L + ++ + N L+ARNIP + + +G Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVTFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+++ KL+++K A+E +E+ Sbjct: 181 VNVLDVIKHDKLIITKDAVEKVEE 204 >gi|188996238|ref|YP_001930489.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1] gi|188931305|gb|ACD65935.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1] Length = 208 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N E G I++ EDIF + QG + V++W KR G + +K R+EVA + Sbjct: 1 MEFNVVNNKNEVIGKINLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRARH + F GGG A GP P ALPKKVR L+ L+ K +N Sbjct: 61 RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++V+D+ + KTK + ++ L N+ L++ +L+ N + RNIP + +L + Sbjct: 121 ELIVVDDFNFEAPKTKNAIEVLKSFGLENSKVLLVLPEKLE-NVIKSFRNIPKVKILLAE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 GIN YD+L K+++ KSA+E +++R Sbjct: 180 GINSYDVLNNDKVIIFKSALEKIQERL 206 >gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 289 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 1/202 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 82 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 141 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + + Sbjct: 142 KQKGTGRARHGTLRGCQFRGGATMHGPKPRSHAFKLQKKVRRLGLKIALSARTAEGKLCI 201 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V + + D L++DG +D+ +LA +N+ +N++P G+NVY Sbjct: 202 FEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGDIDKKLKLATQNLHYVNVIPSIGLNVY 261 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV+++ AI + +R Sbjct: 262 SILQHDTLVMTRDAINRIVERM 283 >gi|147676656|ref|YP_001210871.1| 50S ribosomal protein L4 [Pelotomaculum thermopropionicum SI] gi|189029511|sp|A5D5J1|RL4_PELTS RecName: Full=50S ribosomal protein L4 gi|146272753|dbj|BAF58502.1| ribosomal protein L4 [Pelotomaculum thermopropionicum SI] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N +GE G +++ ++IF ++ + +L + +R+G +K RSEV Sbjct: 1 MPTVALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P ++LP+KVR LAL+ ALS K S Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L + KTK + L + +AL++ + D + +ARNIPNI PVQ Sbjct: 121 GDILVLDELKLDQPKTKEMARILNNLKVDDALLVT-AEKDEAVERSARNIPNIK--PVQA 177 Query: 181 --INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KLV+++ A+ +E+ F Sbjct: 178 ALLNVYDILAYDKLVMTRDAVARVEEVF 205 >gi|172056141|ref|YP_001812601.1| 50S ribosomal protein L4 [Exiguobacterium sibiricum 255-15] gi|226730665|sp|B1YGV1|RL4_EXIS2 RecName: Full=50S ribosomal protein L4 gi|171988662|gb|ACB59584.1| ribosomal protein L4/L1e [Exiguobacterium sibiricum 255-15] Length = 207 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + ++ + Q +R G +KGRSEV Sbjct: 1 MPKVALLNQTGTQVGDIELADAVFGIEPNEAVVYDAIVMQQASRRQGTHDTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LALR ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLALRSALSSKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V++ L KTK +++ F AL + +++ + L+ RNIP + ++ G Sbjct: 121 NEFIVLEGLTIDAPKTKDMISVFAALSIERKVLVVTADYNETVVLSTRNIPGVTVVDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ K++ +K A+ +E+ Sbjct: 181 VNVLDLVAHDKVIFTKDAVARVEE 204 >gi|148260938|ref|YP_001235065.1| 50S ribosomal protein L4 [Acidiphilium cryptum JF-5] gi|326404336|ref|YP_004284418.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301] gi|166234626|sp|A5FZW4|RL4_ACICJ RecName: Full=50S ribosomal protein L4 gi|146402619|gb|ABQ31146.1| LSU ribosomal protein L4P [Acidiphilium cryptum JF-5] gi|325051198|dbj|BAJ81536.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301] Length = 216 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + LD G + E+ FA P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MQIDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV ++L KKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D V+ KT L + + L L++D +D F A+RN+ I++LPV G Sbjct: 121 KLVVLDT-VAGVSKTSELNVKLKKLGWGRTLVVDAV-VDEGFARASRNLIGIDVLPVVGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ L ++ + +E L+ R Sbjct: 179 NVYDILQHDTLAITAAGLEGLKRRL 203 >gi|16077185|ref|NP_387998.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|221307929|ref|ZP_03589776.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|221312250|ref|ZP_03594055.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317184|ref|ZP_03598478.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321447|ref|ZP_03602741.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313788|ref|YP_004206075.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5] gi|1173050|sp|P42921|RL4_BACSU RecName: Full=50S ribosomal protein L4 gi|786154|dbj|BAA08832.1| ribosomal protein L4 [Bacillus subtilis] gi|1165304|gb|AAC45957.1| L4 [Bacillus subtilis] gi|2632384|emb|CAB11893.1| ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|291482490|dbj|BAI83565.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195] gi|320020062|gb|ADV95048.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5] Length = 207 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|157964805|ref|YP_001499629.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5] gi|157844581|gb|ABV85082.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5] Length = 209 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ V +L ++ G IS++E+IFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 3 MKTKVLSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 62 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 63 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 122 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 123 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFCVIDGNEVDINFSLAAKNIYNTVIVPQIG 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 183 ANVYDIIRHEYVLLSQEAVSVLEERLR 209 >gi|296333114|ref|ZP_06875568.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672816|ref|YP_003864487.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str. W23] gi|296149730|gb|EFG90625.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411059|gb|ADM36177.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str. W23] Length = 207 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|154684635|ref|YP_001419796.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens FZB42] gi|308172008|ref|YP_003918713.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7] gi|166234633|sp|A7Z0N9|RL4_BACA2 RecName: Full=50S ribosomal protein L4 gi|154350486|gb|ABS72565.1| RplD [Bacillus amyloliquefaciens FZB42] gi|307604872|emb|CBI41243.1| ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7] gi|328551818|gb|AEB22310.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSARNIPGVTVVQANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|327438279|dbj|BAK14644.1| ribosomal protein L4 [Solibacillus silvestris StLB046] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 118/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RS VA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L+ KTK + AL++S + +++ N L+ARNIP + +L +G Sbjct: 121 QNLVVLDALLFDAPKTKDFKSVLAALEISKKALFVTAEVNENAILSARNIPGVTVLTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L K+V ++ A++ +E+ Sbjct: 181 INVLDLLGHDKVVFTQDAVKKVEE 204 >gi|297618383|ref|YP_003703542.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680] gi|297146220|gb|ADI02977.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G G I +S+++F ++P Q + +V++ Q R+G + +K R EV Sbjct: 1 MPKVPLYNMNGTQVGEIELSDEVFGIEPNQAAMHQVVKMQLANHRVGTAATKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +R GG FGP P + LPKK+R LAL+ ALS K Sbjct: 61 GRKPYRQKGTGRARAGSIRSPLWRKGGVVFGPQPRDYSYTLPKKIRRLALKSALSSKVKG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L + KTK +V AL + +I D N +ARNIP I + Sbjct: 121 RNMIVMDELTLEAPKTKRMVEILNALQVDRKALIVTADGDVNVYKSARNIPGIKPVRADF 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++VYDIL KLV++K A+ +E+ Sbjct: 181 MSVYDILNHDKLVITKDAVAKVEE 204 >gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera] Length = 278 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 69 IPVTNFHNEDKGFMXLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 128 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + Sbjct: 129 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 188 Query: 124 MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + ++ L++DG + +LA +N+ +N+LP G+N Sbjct: 189 LVFDDLEVPSHKTKNIVNYVKEMENXKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 248 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S+ A+ + +R Sbjct: 249 VYSILLHDTLVMSRBAVNKIVERM 272 >gi|229917357|ref|YP_002886003.1| 50S ribosomal protein L4 [Exiguobacterium sp. AT1b] gi|259491559|sp|C4KZP5|RL4_EXISA RecName: Full=50S ribosomal protein L4 gi|229468786|gb|ACQ70558.1| ribosomal protein L4/L1e [Exiguobacterium sp. AT1b] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P + +L + Q +R G +KGRSEV Sbjct: 1 MPKVALLNQTGSQVGEIELAEAIFGIEPNESVLYDAIVMQQASRRQGTHDTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LAL ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALLSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V++ L KTK + +L + ++ + LAARNIP + ++ G Sbjct: 121 NEIIVLEGLAFDAPKTKDMAAVLNSLSVERKALVVTADYNETIALAARNIPGVTVIDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ K++ +K A+ +E+ Sbjct: 181 VNVLDLVANDKVIFTKDAVAKVEE 204 >gi|134298094|ref|YP_001111590.1| 50S ribosomal protein L4 [Desulfotomaculum reducens MI-1] gi|172044220|sp|A4J112|RL4_DESRM RecName: Full=50S ribosomal protein L4 gi|134050794|gb|ABO48765.1| LSU ribosomal protein L4P [Desulfotomaculum reducens MI-1] Length = 206 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N++GE G + + +++F ++P + ++ + Q +R G +K R+EV Sbjct: 1 MPKVALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P +LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D+L KTK +V L AL++ + D N + +ARNI + L G Sbjct: 121 QNIIVLDSLTMDAPKTKDMVRILGNLKADKALVVTATR-DLNVEKSARNIEGVKPLKADG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+L+ +KLV++K A+ +E+ Sbjct: 180 VNVYDLLKYTKLVITKDAVAKIEE 203 >gi|222150446|ref|YP_002559599.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402] gi|254803742|sp|B9E9J2|RL4_MACCJ RecName: Full=50S ribosomal protein L4 gi|222119568|dbj|BAH16903.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G I +++++F ++P Q +L + Q R G K RS V+ Sbjct: 1 MANYDVLKVDGTKAGSIELNDNVFGIEPNQHVLFEAINLQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSAKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+++L KTK L+L ++ D N L+ARNIP + ++ G Sbjct: 121 NAFTVLESLTFDAPKTKEFKNMTTTLELPKKVLFVVEAEDVNVALSARNIPGVTVITTTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI+ +++V++K A+E +E+ Sbjct: 181 LNVLDIVHANQVVMTKGAVEKVEE 204 >gi|42518430|ref|NP_964360.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533] gi|227888852|ref|ZP_04006657.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200] gi|268318852|ref|YP_003292508.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785] gi|46577154|sp|P61064|RL4_LACJO RecName: Full=50S ribosomal protein L4 gi|41582715|gb|AAS08326.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533] gi|227850689|gb|EEJ60775.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200] gi|262397227|emb|CAX66241.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785] gi|329666693|gb|AEB92641.1| 50S ribosomal protein L4 [Lactobacillus johnsonii DPC 6026] Length = 205 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+ G + ++E+IF ++P + ++ + Q KR G S K RS V Sbjct: 1 MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++++D L + KTK L ++S +++ D+N QL+ +N+P + ++PV G Sbjct: 121 NDLIILDQLTLEAPKTKELKAILDNANVSGKVLV--VSDDKNVQLSGKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KLVL++ AI+ +E+ Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEE 202 >gi|157690901|ref|YP_001485363.1| 50S ribosomal protein L4 [Bacillus pumilus SAFR-032] gi|194017590|ref|ZP_03056201.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061] gi|166990946|sp|A8F986|RL4_BACP2 RecName: Full=50S ribosomal protein L4 gi|157679659|gb|ABV60803.1| ribosomal protein L4 [Bacillus pumilus SAFR-032] gi|194010862|gb|EDW20433.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061] Length = 207 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADANETVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|161485627|ref|YP_064861.2| 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54] Length = 207 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N + E I +++ IF + ++ IL V+R Q KR G + +K R EV Sbjct: 1 MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P L +KVR A+ ALS +F Sbjct: 61 GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +++V+DN + KTK + + L+L+NALI+ D + N + RN+ +LP Sbjct: 121 GNLIVLDNFIMDAIKTKEFASTMKTLELANALIVMDDASE---NLSKSCRNVHGYRILPA 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDIL K+VL K IE+LE R Sbjct: 178 EGLNVYDILLHKKVVLVKPVIESLEKRL 205 >gi|81642546|sp|Q6AP70|RL4_DESPS RecName: Full=50S ribosomal protein L4 gi|50876014|emb|CAG35854.1| probable 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54] Length = 211 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N + E I +++ IF + ++ IL V+R Q KR G + +K R EV Sbjct: 5 MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 64 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P L +KVR A+ ALS +F Sbjct: 65 GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 124 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +++V+DN + KTK + + L+L+NALI+ D + N + RN+ +LP Sbjct: 125 GNLIVLDNFIMDAIKTKEFASTMKTLELANALIVMDDASE---NLSKSCRNVHGYRILPA 181 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDIL K+VL K IE+LE R Sbjct: 182 EGLNVYDILLHKKVVLVKPVIESLEKRL 209 >gi|313123112|ref|YP_004033371.1| 50S ribosomal protein l4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279675|gb|ADQ60394.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684721|gb|EGD26875.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 205 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK V L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTLDAPKTKDFVAILNGLKLEGKVLV--VSDDKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEE 202 >gi|51473838|ref|YP_067595.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington] gi|81610771|sp|Q68W79|RL4_RICTY RecName: Full=50S ribosomal protein L4 gi|51460150|gb|AAU04113.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington] Length = 207 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 5/205 (2%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + +L E+ G I++++DIFA++ + I+ +V+ WQ + G K+K SEV+ T K Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFCSND 122 + QKGTG AR S Q RGGG + GP + HA LPKKVR L L HALS+K + Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPK--VRSHAIKLPKKVRKLGLIHALSEKCAAGK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++I++L ++ KT LV + IIDG ++D NF LA +NI N ++P G N Sbjct: 123 LLIINSLKLEKPKTSVLVNLLNKFQGQSFFIIDGNKVDTNFSLATKNIYNTLIVPQIGAN 182 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 VYDI+R ++LS+ A+ LE+R + Sbjct: 183 VYDIIRHEYVLLSQEAVSFLEERLR 207 >gi|191639427|ref|YP_001988593.1| 50S ribosomal protein L4 [Lactobacillus casei BL23] gi|227533961|ref|ZP_03964010.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630350|ref|ZP_04673381.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067502|ref|YP_003789525.1| 50S ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|226730677|sp|B3WAL6|RL4_LACCB RecName: Full=50S ribosomal protein L4 gi|190713729|emb|CAQ67735.1| 50S ribosomal protein L4 [Lactobacillus casei BL23] gi|227188338|gb|EEI68405.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527962|gb|EEQ66963.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439909|gb|ADK19675.1| Ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|327383516|gb|AEA54992.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W] gi|327386709|gb|AEA58183.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 122/207 (58%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII--DGCQLDRNFQLAARNIPNINLLP 177 +D++V+D L KTK T L +S+ AL++ DG ++ AARN+PN+ ++P Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +GINV D++ KL+L++SA++ +E+ Sbjct: 178 AEGINVLDVVDYKKLILTQSALQKIEE 204 >gi|329121829|ref|ZP_08250444.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965] gi|327467767|gb|EGF13259.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 121/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +++ IF ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + KK R LA++ ALS+K + Sbjct: 61 GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++VID + + KTK +V +A + S ALIIDG + N L+ARNIP + + G Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 IN+YD++ +KL +++ A++ +E+ Sbjct: 181 INIYDLVHYTKLFMTQEAVKQIEE 204 >gi|307244773|ref|ZP_07526874.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis DSM 17678] gi|306491871|gb|EFM63923.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis DSM 17678] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G++ G I +++ IF ++ +L ++ Q KR G +K R+EV Sbjct: 1 MPKINVLNVSGQNVGEIELNDSIFNIEVNAHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P ++LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L + KTK +V F+ L+ + +++ + D N + RNI N+ V Sbjct: 121 NEIIVLDALSLEAPKTKEMVNTFKNLNAAKKVLVVTAENDANIVKSVRNIEGANVCHVST 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL C +++ A++ +E+ + Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206 >gi|224118096|ref|XP_002331557.1| predicted protein [Populus trichocarpa] gi|222873781|gb|EEF10912.1| predicted protein [Populus trichocarpa] Length = 285 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG++ ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 71 IPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 130 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD-----KF 118 Y QKGTGRARH + QFRGG GP P L KKVR L L+ AL+ +F Sbjct: 131 PYRQKGTGRARHGTLRGPQFRGGAVMHGPKPRSHAFKLNKKVRRLGLKIALTAPIILIEF 190 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINL 175 + ++V ++L KTK +V +++ N L++DG ++ +LA +N+ +NL Sbjct: 191 LNAQLLVFEDLEVPTHKTKNIVN--YVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNL 248 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LP G+NVY IL+ LV+S+ A+ + +R Sbjct: 249 LPSIGLNVYSILQHDTLVMSRDAVNKIVERM 279 >gi|313891529|ref|ZP_07825139.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E] gi|313119988|gb|EFR43170.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 121/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +++ IF ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + KK R LA++ ALS+K + Sbjct: 61 GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++VID + + KTK +V +A + S ALIIDG + N L+ARNIP + + G Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 IN+YD++ +KL +++ A++ +E+ Sbjct: 181 INIYDLVHYTKLFITQEAVKQIEE 204 >gi|104773543|ref|YP_618523.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513540|ref|YP_812446.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275690|sp|Q04C14|RL4_LACDB RecName: Full=50S ribosomal protein L4 gi|122397384|sp|Q1GBL7|RL4_LACDA RecName: Full=50S ribosomal protein L4 gi|103422624|emb|CAI97232.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092855|gb|ABJ58008.1| LSU ribosomal protein L4P [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125176|gb|ADY84506.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 205 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KT+ V L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTMDAPKTRDFVAILNGLKLEGKVLV--VSDDKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEE 202 >gi|300812351|ref|ZP_07092786.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496656|gb|EFK31743.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 205 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTLDAPKTKDFIAILNGLKLEGKVLV--VSDDKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEE 202 >gi|323342790|ref|ZP_08083022.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463902|gb|EFY09096.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 209 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + NL+G+ + ++E +F ++P + + Q R G K+K R+EV Sbjct: 1 MPKLDILNLEGKSLRELELNEAVFGIEPNNQTIFEAVVMQQASLRQGTHKTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++L +KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYKYSLNRKVRRLALRSALSQKVMD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++ V++NL + KTK + AL L+ ++ + N L+ RN+ N +L V Sbjct: 121 SEMSVVENLTVENVKTKEFIAVMDALKLNKKTLFVVSAEENIDNAYLSMRNLSNTMMLDV 180 Query: 179 QGINVYDILRCSKLVLS-KSAIEALE 203 QG+NVYDI+ C ++V + K+AIEA E Sbjct: 181 QGLNVYDIVNCDQIVFTEKAAIEAGE 206 >gi|301059224|ref|ZP_07200161.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2] gi|300446659|gb|EFK10487.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2] Length = 207 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V NL E + +++D+F++ ++ +L +V+ Q R G + SK R+ V + Sbjct: 1 MTVLDVYNLQKEKVSEVELNKDVFSVPIKKHVLHQVVVAQLAGHRTGTAASKNRAAVKGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K++ QKGTGRAR S +GGG AFGP P +PKKVR ALR AL+DK Sbjct: 61 GAKLWRQKGTGRARVGKASSPTRKGGGVAFGPSPRSYDQKIPKKVRKSALRMALTDKVQC 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VID+ E KTK+ V D+ ALI+ + N + +++N+P I ++ +G Sbjct: 121 EQLFVIDDFTLPEIKTKHFVEAMNQFDVQKALIVTN-EKSENLEKSSKNVPKIKVMRSEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDIL+ L L + A++ +++ Sbjct: 180 LNVYDILKHDTLFLERMAVDKIQE 203 >gi|323703547|ref|ZP_08115193.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574] gi|323531538|gb|EGB21431.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574] Length = 206 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 121/204 (59%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G + + +++F ++P + ++ V+ +R G +K R+EV Sbjct: 1 MPKVALYNISGEQIGEVELKDEVFGIEPNEAVMHDVVVMHLANQRQGTHDTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P ++LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYSYSLPKKVRRLALKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L + KTK +V+ L AL++ + D N + +ARNIP + + G Sbjct: 121 DNIIVLDKLTMEVPKTKEMVSILANLKADKALVVTADR-DINVEKSARNIPGVKPVKAGG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++VYD+L+ KLV++K A+ +E+ Sbjct: 180 VSVYDLLKYDKLVITKDAVAKIEE 203 >gi|145351929|ref|XP_001420312.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus lucimarinus CCE9901] gi|144580546|gb|ABO98605.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus lucimarinus CCE9901] Length = 224 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 3/203 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V + DGE +G + + IF + + RV+RWQ + R G K+K R EVA + K Sbjct: 19 VPVYSFDGEARGSVELPGRIFDQPLRVDVAHRVVRWQRAKARKGLHKTKSRGEVAGSTRK 78 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRAR + Q RGGG A GPV HALPKKVR + L+ ALS K + Sbjct: 79 VRPQKGSGRARVGNLKAPQMRGGGTAHGPVVRSHAHALPKKVRRMGLKVALSAKAAEGKL 138 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +V+D+ E KT+ + L L G +L R ++ARN+P++ +LP G NV Sbjct: 139 IVVDSFAGMEPKTRAMKATLERLTGDLGLAAGGDELVR---MSARNLPHVEVLPQIGANV 195 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 Y ILR L+++KS +E L R Sbjct: 196 YSILRRRTLIVTKSGLEQLIARL 218 >gi|116495946|ref|YP_807680.1| 50S ribosomal protein L4 [Lactobacillus casei ATCC 334] gi|122262654|sp|Q034Y4|RL4_LACC3 RecName: Full=50S ribosomal protein L4 gi|116106096|gb|ABJ71238.1| LSU ribosomal protein L4P [Lactobacillus casei ATCC 334] Length = 207 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 122/207 (58%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRDSLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII--DGCQLDRNFQLAARNIPNINLLP 177 +D++V+D L KTK T L +S+ AL++ DG ++ AARN+PN+ ++P Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +GINV D++ KL+L++SA++ +E+ Sbjct: 178 AEGINVLDVVDYKKLILTQSALQKIEE 204 >gi|125975385|ref|YP_001039295.1| 50S ribosomal protein L4P [Clostridium thermocellum ATCC 27405] gi|256005328|ref|ZP_05430294.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360] gi|281419347|ref|ZP_06250362.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20] gi|166234659|sp|A3DJH3|RL4_CLOTH RecName: Full=50S ribosomal protein L4 gi|125715610|gb|ABN54102.1| LSU ribosomal protein L4P [Clostridium thermocellum ATCC 27405] gi|255990764|gb|EEU00880.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360] gi|281406967|gb|EFB37230.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20] gi|316939501|gb|ADU73535.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 1313] Length = 208 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 126/209 (60%), Gaps = 5/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +++G+ G I++ +DIF ++ + + +V+ Q +R G +K +SEV Sbjct: 1 MPKVDVYDINGKVVGEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +Q+ GG A GP P +A+PKK+R LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSAQWVKGGIALGPKPRSYKYAVPKKLRRLALKSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++V+D+L E KTK + + L D + L++ +RN +L+ARNIP + L Sbjct: 121 NELLVLDSLNFDEIKTKQMANVLKNLKVNDTTAVLVL--ADKNRNVELSARNIPGLKTLF 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V +NVYDI+R K +++K A+ +E+ + Sbjct: 179 VNTMNVYDIIRHDKFIITKDAVAKVEEVY 207 >gi|114567840|ref|YP_754994.1| 50S ribosomal protein L4/L1e [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317285|sp|Q0AUI1|RL4_SYNWW RecName: Full=50S ribosomal protein L4 gi|114338775|gb|ABI69623.1| LSU ribosomal protein L4P [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 207 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ ++ G G I +++ +F +KP Q ++ ++ Q KR G + SK R+EV Sbjct: 1 MPKVALYDMSGAQVGEIELNDSVFGIKPNQAVMFDFVKMQLANKRAGTASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GG AFGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARVGSSRNPVWTKGGVAFGPRPRDFSYRLPRKVRRLAMKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D+L E KT+ +V ++L + ++ D N +ARNIP + L Sbjct: 121 NNIVVLDSLTFDEPKTRLMVQTLKSLPVGKKTLVVTAYGDPNVIKSARNIPGVKPLRADF 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L L++++ A+ +E+ F Sbjct: 181 INVYDLLNYDTLLITREAVARIEEVF 206 >gi|328953157|ref|YP_004370491.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109] gi|328453481|gb|AEB09310.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109] Length = 207 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++D G +S+ +DIF + Q IL V+ Q +R G + +KGRSEV Sbjct: 1 MPVIDVYDIDRNKVGEVSLRDDIFNIPVQGHILHEVVTMQLACRRAGTASTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + PKKVR LAL+ ALS K Sbjct: 61 GHKPWRQKGTGRARVGSIRSPLWRGGGVVFGPKPRSYAYKPPKKVRRLALKMALSSKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D KTK + ++ AL I ++ L++RN+P + ++ +G Sbjct: 121 GQLLILDQYPYDSPKTKDFIRVLEKFQINKALFITADD-NQVLTLSSRNVPYVQIMRTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDILR LV+ + AI +E+RF Sbjct: 180 INVYDILRYDHLVVFQPAISQIEERF 205 >gi|255635327|gb|ACU18017.1| unknown [Glycine max] Length = 312 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 116/204 (56%), Gaps = 2/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + D+F L ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 104 IPVTNFHNEDKGYMVFPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 163 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S QFRGG GP P + KKVR L L+ ALS + + Sbjct: 164 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRCLGLKIALSARAAEGKL 223 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V ++L KTK +V + + D L++DG +D +L+ +N+ +N+LP G+N Sbjct: 224 LVFEDLEVPTHKTKNIVNYYNQMEDTKKLLLVDGT-IDEKLKLSTQNLHYVNVLPSIGLN 282 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S++A+ + +R Sbjct: 283 VYSILLHDTLVMSRAAVTKIVERM 306 >gi|237755897|ref|ZP_04584490.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium yellowstonense SS-5] gi|237691947|gb|EEP60962.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium yellowstonense SS-5] Length = 208 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G +++ EDIF + QG + V++W KR G + +K R+EVA + K+Y QKGTGRAR Sbjct: 14 GKVNLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSNRKIYPQKGTGRAR 73 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 H + + F GGG A GP P ALPKKVR L+ L+ K +N+++V+++ + Sbjct: 74 HGDRKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNNELIVVEDFNFEAP 133 Query: 135 KTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK + ++ L N+ L++ +L+ N + RNIP + +L +GIN YD+L K+ Sbjct: 134 KTKNAIEVLKSFGLENSKVLLVLPEKLE-NVIKSFRNIPKVKILLAEGINSYDVLNNDKV 192 Query: 193 VLSKSAIEALEDRF 206 ++ KSA+E +++R Sbjct: 193 IIFKSALEKIQERL 206 >gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera] Length = 315 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 117/204 (57%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 106 IPVTNFHNEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 165 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + Sbjct: 166 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 225 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + ++ + L++DG + +LA +N+ +N+LP G+N Sbjct: 226 LVFDDLEVPSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 285 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S+ A+ + +R Sbjct: 286 VYSILLHDTLVMSRDAVNKIVERM 309 >gi|255554769|ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis] gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4, putative [Ricinus communis] Length = 294 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 85 IPVTNFLNEDKGFMVLAGDVFDVPIKKHIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 144 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRARH + QFRGG GP P KKVR L L+ AL+ + + Sbjct: 145 PYRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKCNKKVRRLGLKIALTARAAEGKL 204 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V ++L KTK +V + ++ + L++DG ++ +LAA+N+ +N+LP G+N Sbjct: 205 LVFEDLEIPTHKTKNIVNYVKQMEETKKLLLVDGGPINEKLKLAAQNLHYVNVLPSIGLN 264 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S+ A+ + +R Sbjct: 265 VYSILLHDTLVMSRDAVNRIVERM 288 >gi|163783268|ref|ZP_02178261.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] gi|159881376|gb|EDP74887.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] Length = 199 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G I V +++F +K ++ +L V++WQ +R G +K R EV Y+G K+ QKGTG AR Sbjct: 4 GRIEVKDEVFNVKVKKHVLWEVVKWQLASRRQGTHSTKTRGEVNYSGRKILPQKGTGNAR 63 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKE 133 H + + GGG A GP P ++LPKKVR LAL+ ALSDK + +++++D + + Sbjct: 64 HGDRGANILVGGGVAHGPRPRDYSYSLPKKVRKLALKMALSDKAQNKNVVIVDKIEIGDT 123 Query: 134 CKTKYLVT--RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + + +D L++ + D + RN+PN +LPV+G+NVYDIL K Sbjct: 124 PKTKKALEFLKKKKIDSEKVLVVT-PEKDELIMKSFRNLPNAKVLPVEGLNVYDILWSDK 182 Query: 192 LVLSKSAIEALEDRFK 207 LV+ K A+E + R + Sbjct: 183 LVILKGALEGIYKRVE 198 >gi|37912990|gb|AAR05319.1| ribosomal protein L4 [uncultured marine alpha proteobacterium HOT2C01] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 119/205 (58%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +DG+ G +++ + +F K ++ ++RW ++ +++K RSEV T Sbjct: 24 MQIDMHKIDGKKSGSVNLKDQLFNSKSGLSVVGSLVRWSESNQKPLRARTKNRSEVKGTT 83 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G ARH SK + FR GG A + + +PK+ R AL+H +DK +N Sbjct: 84 QKLGRQKGSGGARHGSKKANIFRSGGMAHNLRGVRSLKKMPKRTRQEALKHIFADKLKNN 143 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++++ L +E KTK L L+ +ALI++G + D NF LA+RN+ NI + Sbjct: 144 NLIIVEELKIEEPKTKILAKSLSDLNAHSALILEGDKPDNNFVLASRNLKNIKYSSINNF 203 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N D+L KL++SK+A+E LE R Sbjct: 204 NALDLLGFEKLIMSKNALEILESRI 228 >gi|223944103|gb|ACN26135.1| unknown [Zea mays] Length = 197 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 1/186 (0%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y QKGTG+ARH + + Sbjct: 6 DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTLRGA 65 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 QFRGG GP P L KKVR L L+ ALS + +++ ++L KTK +V Sbjct: 66 QFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQ 125 Query: 142 RFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 R +D S L++DG +D+ +LA +N+ +N+LP G+NVY IL+ LV++++AI Sbjct: 126 YIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAIN 185 Query: 201 ALEDRF 206 + +R Sbjct: 186 RIVERM 191 >gi|167629468|ref|YP_001679967.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1] gi|226730671|sp|B0TC57|RL4_HELMI RecName: Full=50S ribosomal protein L4 gi|167592208|gb|ABZ83956.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1] Length = 207 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL--ARVLRWQSWRKRIGCSKSKGRSEVA 58 M ++++ N +G G I +++ IF ++P + ++ A V + +WR+ G K K R EV+ Sbjct: 1 MPKVALYNTEGAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRR--GTHKVKSRGEVS 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR + +RGG FGP P A+PKKVR LAL+ ALSDK Sbjct: 59 GGGKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKV 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 S +++V+D L KTK + L + ++ +D +ARNIP ++ + Sbjct: 119 RSGNLIVVDALEMDAPKTKVIAGILNKLKVERKALLVTADIDETVFKSARNIPGVSPVEA 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINVYDIL KLV++K+A+ +E+ F Sbjct: 179 VGINVYDILNHDKLVITKNAVAKVEEVF 206 >gi|295099236|emb|CBK88325.1| LSU ribosomal protein L4P [Eubacterium cylindroides T2-87] Length = 209 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N G G + +++ +F ++P Q L L Q +R G + +KGRSEV+ Sbjct: 1 MATIDVINQTGAVVGSMELNDAVFGIEPNQQSLFDALVMQQASRRQGTADTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +QFRGGG FG P + + KKVR LA++ ALS+K + Sbjct: 61 GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRSYKYTINKKVRRLAVKSALSEKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V+D E KTK V+ A+ ++ + N L+ARNIP + +L Sbjct: 121 QALSVLDKFEISEPKTKTFVSIMEAIKAPKKTLFVVAENEEATNAYLSARNIPGVMMLTS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 GINV+D++ + +V++ +A++ +E+ Sbjct: 181 TGINVFDLVNANAIVMTSAAVKEVEE 206 >gi|116628964|ref|YP_814136.1| 50S ribosomal protein L4 [Lactobacillus gasseri ATCC 33323] gi|238853482|ref|ZP_04643860.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4] gi|282852650|ref|ZP_06261992.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri 224-1] gi|300362388|ref|ZP_07058564.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri JV-V03] gi|311111236|ref|ZP_07712633.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri MV-22] gi|122274038|sp|Q046C4|RL4_LACGA RecName: Full=50S ribosomal protein L4 gi|116094546|gb|ABJ59698.1| LSU ribosomal protein L4P [Lactobacillus gasseri ATCC 33323] gi|238833922|gb|EEQ26181.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4] gi|282556392|gb|EFB62012.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri 224-1] gi|300353379|gb|EFJ69251.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri JV-V03] gi|311066390|gb|EFQ46730.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri MV-22] Length = 205 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 115/204 (56%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+ G + ++E+IF ++P + ++ + Q KR G S K RS V Sbjct: 1 MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++++D L + KTK L ++S +++ D+N QL+ +N+P + ++PV G Sbjct: 121 KDLIILDQLTLEAPKTKELKAILDNANVSGKVLV--VSDDKNVQLSGKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KLVL++ AI+ +E+ Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEE 202 >gi|15605617|ref|NP_212990.1| 50S ribosomal protein L4 [Aquifex aeolicus VF5] gi|6647723|sp|O66432|RL4_AQUAE RecName: Full=50S ribosomal protein L4 gi|2982768|gb|AAC06394.1| ribosomal protein L04 [Aquifex aeolicus VF5] Length = 199 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/191 (38%), Positives = 119/191 (62%), Gaps = 4/191 (2%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + V +D+F +K ++ +L V++WQ ++R G +K R EVAY+G K+ QKGTG AR Sbjct: 4 GDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGNAR 63 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKE 133 H + V+ F GGG A GP P + LPK+VR L L+ ALSDK +N I+ +DN+ + K+ Sbjct: 64 HGERGVNIFVGGGVAHGPKPRDYEYPLPKRVRKLGLKMALSDKARNNAIIFVDNIDLGKK 123 Query: 134 CKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + L + L++ + D ++ + RN+PN+ +L +G+NVYD+L +K Sbjct: 124 PKTKKAIEFLKNLGVEKEKVLVVIPEKADVLYK-SFRNLPNVRVLLPEGLNVYDVLWANK 182 Query: 192 LVLSKSAIEAL 202 LV+ K ++ + Sbjct: 183 LVIQKDCLDRI 193 >gi|187251821|ref|YP_001876303.1| 50S ribosomal protein L4/L1e [Elusimicrobium minutum Pei191] gi|186971981|gb|ACC98966.1| Ribosomal protein L4/L1e [Elusimicrobium minutum Pei191] Length = 211 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V N+ G+++G ++ E +F+ KP L V+ +R G + K R+EV+ TG Sbjct: 1 METKVFNIQGKEEGTTALPEVLFSAKPNPTFLHEVVTAFLANQRRGTADVKTRAEVSGTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRARH S +R GG AFGP P LP + R AL ALS K+ Sbjct: 61 KKPWKQKGTGRARHGSMRSPIWRHGGVAFGPTPRSFRQYLPAQKRRAALIQALSAKYAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V ++ KE KTK L T +A++ L++ + D L+ARNI ++L+P Sbjct: 121 NVIVFNDGGIKESKTKVLATALKAMEAGRKPLVLTTEKTDNKVFLSARNIAGLSLIPASD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L SK++++K A+E L+ F Sbjct: 181 VNAYVVLNSSKIIITKDALETLKSTF 206 >gi|258513641|ref|YP_003189863.1| 50S ribosomal protein L4 [Desulfotomaculum acetoxidans DSM 771] gi|257777346|gb|ACV61240.1| ribosomal protein L4/L1e [Desulfotomaculum acetoxidans DSM 771] Length = 206 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N+ GE G +++ +++F ++ + +L + Q +R G +K R EV Sbjct: 1 MPTVALFNIKGEQVGEVALKDEVFGIEVNESVLHDAVVMQLAGRRQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG FGP P + LPKKVR LAL+ ALS K + Sbjct: 61 GKKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRTYKYKLPKKVRRLALKSALSSKVLA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I V+D L + KTK +V + L + AL++ + D N +ARNIP I + G Sbjct: 121 GNIKVLDALSMEMPKTKEMVGILKNLQVDKALLVIADK-DMNVIKSARNIPGIKPVGAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+L+ + LV++K A+ +E+ Sbjct: 180 VNVYDLLKHTTLVITKDAVSKVEE 203 >gi|260664854|ref|ZP_05865705.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US] gi|297205088|ref|ZP_06922484.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii JV-V16] gi|260561337|gb|EEX27310.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US] gi|297149666|gb|EFH29963.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii JV-V16] Length = 205 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLV--VSDNENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEE 202 >gi|169350796|ref|ZP_02867734.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552] gi|169292382|gb|EDS74515.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552] Length = 207 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+++ V N +G + + ++E +F ++P + L ++ Q R G K K R+EV+ Sbjct: 1 MLKVKVYNQEGAEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ M ++ + KTK +V LD +I ++D N +A NIP + LL + Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLDAPTKTLIVVDEIDENVARSANNIPGVKLLDARR 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDIL KL+++++AI+++E+ Sbjct: 181 VNVYDILNSDKLIMTEAAIKSVEE 204 >gi|311029050|ref|ZP_07707140.1| 50S ribosomal protein L4 [Bacillus sp. m3-13] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 121/204 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G + G + +++ +F ++P +L + Q R G +K KGRSEVA Sbjct: 1 MPKVALYNQAGANVGEVELADAVFGIEPNNSVLFDAIVMQRASLRQGTAKVKGRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++ L KTK + + + L+++ +I D N L+ARNIP + ++ V G Sbjct: 121 NELLVLEGLAFDAPKTKEMTSVLKGLEINRKALIVTADADENVALSARNIPGVTVVTVTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ K++ +K A++ LE+ Sbjct: 181 VNVLDVVNHDKVIFTKDAVQKLEE 204 >gi|323490624|ref|ZP_08095829.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2] gi|323395716|gb|EGA88557.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVALLNQTGSQVGEIELNDHVFGIQPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LALR ALS Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALRSALSSAVVG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV++ L KTK L + + LD N +ARN+ + ++ G Sbjct: 121 ENLMVLEGLTFDAPKTKSFNQLIADLSIGKKALFVTADLDENVAKSARNLKGMTVVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D+L K+V++K+A+E +E+ Sbjct: 181 INVLDLLGHDKIVMTKAAVEKIEE 204 >gi|326803034|ref|YP_004320852.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a] gi|326650179|gb|AEA00362.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 119/204 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I V +DIFA++P + + V+ Q +R G K RS V+ Sbjct: 1 MAKINLYKQDGSQNGEIEVKDDIFAIEPNETAIFDVILMQRASRRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG+AFGP P + LP+KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWVGGGRAFGPTPRSYSYKLPRKVRRLALRSALSRKVSQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK L+++ +++ + + N L+ARN+ N+ ++ Sbjct: 121 DNLVVVDALSLDAPKTKEFKNILENLNVNEKVLVVVDKDNTNAHLSARNLSNVTVVDEDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+ +K+++++SA+ +E+ Sbjct: 181 VNVYDLENHAKVLITQSALSNVEE 204 >gi|299820956|ref|ZP_07052845.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601] gi|299817977|gb|EFI85212.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTSAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLAIKSALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++V++NL KTK + + + + AL++ + D N +L+ARN+ I ++P + Sbjct: 121 ENLLVLENLAFDAPKTKDFAAFLKNISVDTKALVVVAGESD-NVELSARNLQGITVIPAE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 I+V ++ KL+++K+A+E +E+ Sbjct: 180 SISVLEVASHDKLIITKAAVEKVEE 204 >gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1] gi|229313915|gb|EEN79888.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII--DGCQLDRNFQLAARNIPNINLLP 177 D++V+D L + KTK + L +++ AL++ DG + AARN+PN+ ++P Sbjct: 121 GDLVVVDGLSFDDPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +GINV D + KL+L++SA++ +E+ Sbjct: 178 AEGINVLDAVNYKKLILTQSALQKIEE 204 >gi|116873997|ref|YP_850778.1| 50S ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461454|sp|A0ALW7|RL4_LISW6 RecName: Full=50S ribosomal protein L4 gi|116742875|emb|CAK21999.1| ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK T + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFATFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEE 204 >gi|301118172|ref|XP_002906814.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4] gi|262108163|gb|EEY66215.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4] Length = 277 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 2/207 (0%) Query: 2 IELSVRNL--DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 +EL + +L D +D G IS+ ++F + IL RV+RWQ +R G +K+K RSEV+ Sbjct: 68 LELKMLSLAEDTQDLGSISMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSG 127 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K + QKG+GRAR Q+RGG + GPV ++LPKKVR++ LR ALS K Sbjct: 128 STRKPWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYSLPKKVRAMGLRVALSTKLR 187 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++D+L KTK + +AL + G +++ +F LA RNIP+++ L Sbjct: 188 EGKLAIVDSLDVDITKTKDMKKLLGGRGWDHALFVGGEEVESSFVLATRNIPHVDTLAQN 247 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 INVY IL+ L+++K A++ LE+R Sbjct: 248 KINVYSILQKDLLIITKDAVKYLEERL 274 >gi|224542239|ref|ZP_03682778.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM 15897] gi|224524781|gb|EEF93886.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM 15897] Length = 215 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 118/207 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +++ N +GE + ++E++F ++P + V+ Q R G K K R EV+ Sbjct: 9 MLNIALFNQNGEKLNDLELNENVFGIEPNNQAIFDVVLLQRASLRQGTHKVKNRHEVSGG 68 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + KKV++LALR LS K Sbjct: 69 GKKPWRQKGTGRARQGSIRAPQWRGGGIVFGPTPRSYDFKINKKVKNLALRSVLSQKVID 128 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ +D + + KTK +V + +I +L+ N L+ARN+P + ++ Sbjct: 129 QELVALDAIAFETIKTKNVVNFLGNFENPRKTLIVVDKLEENLVLSARNVPGVKVIEASN 188 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD++ C+KL++++ AI+A+E+ K Sbjct: 189 VNVYDVMDCTKLMMTEKAIKAVEEVLK 215 >gi|256852037|ref|ZP_05557424.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN] gi|260661394|ref|ZP_05862307.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN] gi|256615449|gb|EEU20639.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN] gi|260547849|gb|EEX23826.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN] Length = 205 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++++D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLV--VSDNENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEE 202 >gi|320352918|ref|YP_004194257.1| 50S ribosomal protein L4P [Desulfobulbus propionicus DSM 2032] gi|320121420|gb|ADW16966.1| LSU ribosomal protein L4P [Desulfobulbus propionicus DSM 2032] Length = 207 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N E G I ++E +F L+ GIL V+ Q +R G + +K R EV+ Sbjct: 1 MATCDIYNTRAEKVGEIDLNESLFNLEVNTGILHEVVCMQRANRRSGNACTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P +++PKKV+ LAL+ A+S + Sbjct: 61 GAKPWRQKGTGRARSGSRTSPVWRGGGTVFGPKPRDYSYSMPKKVKRLALKMAMSARCQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+++D KTK + N L++ D N L+ARN +LPV G Sbjct: 121 GNIVIVDQFDLPAVKTKEFLKVMTNFQFENCLVVTAESED-NLGLSARNAVGFKVLPVAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ SKL++ +S++ +E+R Sbjct: 180 LNVYDILKHSKLMILQSSLAKIEERL 205 >gi|117924156|ref|YP_864773.1| 50S ribosomal protein L4P [Magnetococcus sp. MC-1] gi|166234681|sp|A0L5X4|RL4_MAGSM RecName: Full=50S ribosomal protein L4 gi|117607912|gb|ABK43367.1| LSU ribosomal protein L4P [Magnetococcus sp. MC-1] Length = 207 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V++ + ++ ++E +F + + +L + +Q ++R+G + GRS+V Sbjct: 1 MIQVPVKDANNQEVRSTELNESVFGREIRADLLGMAVNYQLAKRRLGTATVLGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + QFR GG FGP H L KKVR LAL+ ALS K S Sbjct: 61 GKKPYRQKGTGNARQGTIRAPQFRTGGIVFGPQQRDYSHKLNKKVRKLALQTALSVKASS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + L + + + +L L+ARNIPN+ + V G Sbjct: 121 EEMVVVDKLELASIKTKEMKALLSTLGAARSTFLVVKELSNEIVLSARNIPNVMVADVDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR KLV+++ A+ +LE++ Sbjct: 181 VNVYDLLRYEKLVITEEAVRSLEEKL 206 >gi|70725804|ref|YP_252718.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435] gi|82581594|sp|Q4L8B3|RL4_STAHJ RecName: Full=50S ribosomal protein L4 gi|68446528|dbj|BAE04112.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ ++DN + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NNFTIVDNFGFEAPKTKEFKNVLTTLEQPKKVLVVTDSEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +++++SA + +E+ Sbjct: 181 LNVLDITSADSVIITESAAKKVEE 204 >gi|49484465|ref|YP_041689.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MRSA252] gi|257423734|ref|ZP_05600163.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257426412|ref|ZP_05602814.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429051|ref|ZP_05605438.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 68-397] gi|257434658|ref|ZP_05610709.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M876] gi|282902152|ref|ZP_06310045.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus C160] gi|282906592|ref|ZP_06314440.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909562|ref|ZP_06317373.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911809|ref|ZP_06319605.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282915098|ref|ZP_06322875.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899] gi|282920824|ref|ZP_06328542.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C427] gi|282925729|ref|ZP_06333377.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C101] gi|283959027|ref|ZP_06376468.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497502|ref|ZP_06665356.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus 58-424] gi|293511077|ref|ZP_06669774.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M809] gi|293549683|ref|ZP_06672355.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015] gi|295428832|ref|ZP_06821456.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589682|ref|ZP_06948323.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MN8] gi|56749402|sp|Q6GEI4|RL4_STAAR RecName: Full=50S ribosomal protein L4 gi|49242594|emb|CAG41315.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MRSA252] gi|257272752|gb|EEV04854.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257276043|gb|EEV07494.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279532|gb|EEV10119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 68-397] gi|257285254|gb|EEV15370.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M876] gi|282312558|gb|EFB42962.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C101] gi|282315239|gb|EFB45623.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C427] gi|282320819|gb|EFB51153.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899] gi|282323505|gb|EFB53821.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282326541|gb|EFB56843.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329491|gb|EFB59012.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282596611|gb|EFC01570.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus C160] gi|283788619|gb|EFC27446.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290918730|gb|EFD95806.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015] gi|291096433|gb|EFE26691.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus 58-424] gi|291466064|gb|EFF08593.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M809] gi|295127181|gb|EFG56823.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578193|gb|EFH96906.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MN8] gi|312437340|gb|ADQ76411.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH60] gi|315193501|gb|EFU23897.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS00] Length = 207 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEE 204 >gi|307110022|gb|EFN58259.1| hypothetical protein CHLNCDRAFT_142203 [Chlorella variabilis] Length = 322 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 10/209 (4%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 +L + G +++ DIF + ++ IL RV+RWQ +++ G K+K RSEV G K Q Sbjct: 105 DLSRQPVGTVTLGGDIFDVPIRRDILHRVVRWQLAKRQQGTHKTKTRSEVRGGGRKPRPQ 164 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GR+R + Q+RGGG A GPVP H LPK+VR L L+ ALS K ++V+D Sbjct: 165 KGSGRSRQGTIRAPQWRGGGVAHGPVPRSHEHDLPKRVRRLGLQCALSAKAWERRLLVVD 224 Query: 128 NLVSKECKTKYLVTRFRALDLSNA-----LIIDGCQLDRN----FQLAARNIPNINLLPV 178 +L E KTK ++ AL L++A L+ D +L + + A N+P ++ +P Sbjct: 225 SLQPAEPKTKVMLDNVDAL-LADAPRRSVLLCDSSKLGEDGGEVLRRTAANLPWVDCIPQ 283 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 QG+NVY IL+ LVL+K A++ L +R + Sbjct: 284 QGLNVYSILQRDYLVLTKRAVDLLMERLR 312 >gi|164686528|ref|ZP_02210556.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM 16795] gi|164604397|gb|EDQ97862.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM 16795] Length = 207 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ +F ++ + +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNIQGQNVGEIELSDAVFGVEVNEHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ AL+ K + Sbjct: 61 GRKPWRQKGTGRARQGSIRAVQWIGGGVAFAPKPRSYRYTLPKKVRRLAMKSALTSKVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK T ++ + ++ + + N +A NIPN+ V Sbjct: 121 NEMIVLDALTMDAPKTKEFATILNNVNAAKKALVVMAEKNENVIKSAANIPNVETALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +++ A++ +E+ + Sbjct: 181 INVYDILKYDSFIITTDAVKKVEEVY 206 >gi|299143193|ref|ZP_07036273.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517678|gb|EFI41417.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 207 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G I ++E+IF + + + V++ +R G +K R+EV Sbjct: 1 MPKIQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P + PKKVR LALR AL+ K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D++ + KTK V +A+ ++ D ++AARNIPN+ + Sbjct: 121 NEMIVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGYDEKVKIAARNIPNVKTTMAEN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV+++ A+ +E+ F Sbjct: 181 INVYDILKYNSLVITEDALRVIEEVF 206 >gi|15925239|ref|NP_372773.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50] gi|15927829|ref|NP_375362.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315] gi|21283897|ref|NP_646985.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2] gi|49487031|ref|YP_044252.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650833|ref|YP_187048.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL] gi|82751838|ref|YP_417579.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122] gi|87160155|ref|YP_494838.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196161|ref|YP_500978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268689|ref|YP_001247632.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH9] gi|150394754|ref|YP_001317429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH1] gi|151222363|ref|YP_001333185.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980564|ref|YP_001442823.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3] gi|221140149|ref|ZP_03564642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317009|ref|ZP_04840222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729915|ref|ZP_04864080.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734342|ref|ZP_04868507.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] gi|255007029|ref|ZP_05145630.2| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794595|ref|ZP_05643574.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781] gi|258408803|ref|ZP_05681087.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763] gi|258422402|ref|ZP_05685314.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719] gi|258422696|ref|ZP_05685601.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635] gi|258439791|ref|ZP_05690537.1| ribosomal protein L4 [Staphylococcus aureus A9299] gi|258442653|ref|ZP_05691213.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115] gi|258446648|ref|ZP_05694803.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300] gi|258450234|ref|ZP_05698326.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224] gi|258450756|ref|ZP_05698815.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948] gi|258455394|ref|ZP_05703354.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937] gi|262048513|ref|ZP_06021397.1| 50S ribosomal protein L4 [Staphylococcus aureus D30] gi|262052038|ref|ZP_06024249.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3] gi|269203882|ref|YP_003283151.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98] gi|282893687|ref|ZP_06301919.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117] gi|282917594|ref|ZP_06325346.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus D139] gi|282922118|ref|ZP_06329814.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765] gi|283767341|ref|ZP_06340256.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19] gi|284025275|ref|ZP_06379673.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 132] gi|294848782|ref|ZP_06789527.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754] gi|295404925|ref|ZP_06814738.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819] gi|296275960|ref|ZP_06858467.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MR1] gi|297209938|ref|ZP_06926334.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297243983|ref|ZP_06927873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796] gi|300910950|ref|ZP_07128400.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304379433|ref|ZP_07362168.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|46577149|sp|P61058|RL4_STAAM RecName: Full=50S ribosomal protein L4 gi|46577150|sp|P61059|RL4_STAAN RecName: Full=50S ribosomal protein L4 gi|46577151|sp|P61060|RL4_STAAW RecName: Full=50S ribosomal protein L4 gi|56749373|sp|Q6G772|RL4_STAAS RecName: Full=50S ribosomal protein L4 gi|81693960|sp|Q5HDV9|RL4_STAAC RecName: Full=50S ribosomal protein L4 gi|109893640|sp|Q2FEP0|RL4_STAA3 RecName: Full=50S ribosomal protein L4 gi|109893641|sp|Q2YYP7|RL4_STAAB RecName: Full=50S ribosomal protein L4 gi|122538859|sp|Q2FW07|RL4_STAA8 RecName: Full=50S ribosomal protein L4 gi|166199911|sp|A7X5G2|RL4_STAA1 RecName: Full=50S ribosomal protein L4 gi|172049047|sp|A6QJ91|RL4_STAAE RecName: Full=50S ribosomal protein L4 gi|189042887|sp|A6U3X4|RL4_STAA2 RecName: Full=50S ribosomal protein L4 gi|189042888|sp|A5IV33|RL4_STAA9 RecName: Full=50S ribosomal protein L4 gi|13702049|dbj|BAB43341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315] gi|14248022|dbj|BAB58411.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50] gi|21205339|dbj|BAB96033.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2] gi|49245474|emb|CAG43951.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285019|gb|AAW37113.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL] gi|82657369|emb|CAI81810.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122] gi|87126129|gb|ABD20643.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203719|gb|ABD31529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741758|gb|ABQ50056.1| LSU ribosomal protein L4P [Staphylococcus aureus subsp. aureus JH9] gi|149947206|gb|ABR53142.1| ribosomal protein L4/L1e [Staphylococcus aureus subsp. aureus JH1] gi|150375163|dbj|BAF68423.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156722699|dbj|BAF79116.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3] gi|253726362|gb|EES95091.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727659|gb|EES96388.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] gi|257788567|gb|EEV26907.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781] gi|257840486|gb|EEV64946.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763] gi|257841833|gb|EEV66270.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719] gi|257847107|gb|EEV71116.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635] gi|257847567|gb|EEV71569.1| ribosomal protein L4 [Staphylococcus aureus A9299] gi|257851774|gb|EEV75708.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115] gi|257854716|gb|EEV77664.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300] gi|257856326|gb|EEV79235.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224] gi|257861539|gb|EEV84341.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948] gi|257862605|gb|EEV85373.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937] gi|259160093|gb|EEW45126.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3] gi|259163371|gb|EEW47929.1| 50S ribosomal protein L4 [Staphylococcus aureus D30] gi|262076172|gb|ACY12145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98] gi|269941838|emb|CBI50248.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20] gi|282318556|gb|EFB48914.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus D139] gi|282593586|gb|EFB98579.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765] gi|282763745|gb|EFC03873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117] gi|283461220|gb|EFC08304.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19] gi|283471471|emb|CAQ50682.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus ST398] gi|285817911|gb|ADC38398.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981] gi|294824161|gb|EFG40585.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754] gi|294969870|gb|EFG45888.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819] gi|296885611|gb|EFH24548.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178761|gb|EFH38006.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796] gi|298695505|gb|ADI98727.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED133] gi|300887930|gb|EFK83125.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH70] gi|302333885|gb|ADL24078.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JKD6159] gi|302752122|gb|ADL66299.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341965|gb|EFM07869.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830598|emb|CBX35440.1| 50S ribosomal protein L4 (BL4) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129671|gb|EFT85662.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS03] gi|315198221|gb|EFU28552.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS01] gi|320140213|gb|EFW32072.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143483|gb|EFW35264.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440071|gb|EGA97786.1| 50S ribosomal protein L4 [Staphylococcus aureus O11] gi|323442745|gb|EGB00371.1| 50S ribosomal protein L4 [Staphylococcus aureus O46] gi|329314932|gb|AEB89345.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus T0131] gi|329723693|gb|EGG60222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21172] gi|329730071|gb|EGG66461.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21193] gi|329732021|gb|EGG68376.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21189] Length = 207 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEE 204 >gi|7674307|sp|Q9ZI49|RL4_AQUPY RecName: Full=50S ribosomal protein L4 gi|4165866|gb|AAD08786.1| ribosomal protein L4 [Aquifex pyrophilus] Length = 199 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 116/190 (61%), Gaps = 2/190 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + V +D+F +K ++ +L V++WQ ++R G +K R EVAY+G K+ QKGTG AR Sbjct: 4 GDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGNAR 63 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKE 133 H + V+ F GGG A GP P + LPKKVR L L+ ALSDK ++ IM +DN+ + ++ Sbjct: 64 HGERGVNIFVGGGVAHGPKPRDYEYPLPKKVRKLGLKMALSDKAQNDAIMFVDNIDLGEQ 123 Query: 134 CKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK V + L + L+I + + + RN+ N+ +L +G+NVYD+L +KL Sbjct: 124 PKTKKAVEFLKNLGVDKETLLIVIPEKNEVLYKSFRNLQNVRVLLPEGLNVYDVLWANKL 183 Query: 193 VLSKSAIEAL 202 V+ K ++ + Sbjct: 184 VIHKECLDRI 193 >gi|199598833|ref|ZP_03212244.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001] gi|258540678|ref|YP_003175177.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus Lc 705] gi|199590245|gb|EDY98340.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001] gi|257152354|emb|CAR91326.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus Lc 705] Length = 207 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII--DGCQLDRNFQLAARNIPNINLLP 177 D++V+D L KTK + L +++ AL++ DG + AARN+PN+ ++P Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +GINV D + KL+L++SA++ +E+ Sbjct: 178 AEGINVLDAVNYKKLILTQSALQKIEE 204 >gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] gi|238832313|gb|EEQ24622.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] Length = 205 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 118/204 (57%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLV--VSDNENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEE 202 >gi|289435897|ref|YP_003465769.1| hypothetical protein lse_2536 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172141|emb|CBH28687.1| rplD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313636112|gb|EFS01986.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171] Length = 207 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVASESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEE 204 >gi|290984683|ref|XP_002675056.1| ribosomal protein L4/L1e [Naegleria gruberi] gi|284088650|gb|EFC42312.1| ribosomal protein L4/L1e [Naegleria gruberi] Length = 332 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 13/217 (5%) Query: 3 ELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 E V+NL GE +I++ F P++ IL +++WQ ++R G K+K R E AY Sbjct: 107 EAMVKNLKTGEFTEMINLHPYFFNCTPRKDILYLMVKWQLAKRRQGTHKTKYRLETAYCK 166 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARHS + Q+RGGG A P + L KK+R LALR AL+ K+ Sbjct: 167 QKQTPQKGRGAARHSDRGAPQYRGGGHAMALRPRSYEYNLNKKIRRLALRMALTTKYQQG 226 Query: 122 DIMVIDNLVSKECKTKYLV------------TRFRALDLSNALIIDGCQLDRNFQLAARN 169 ++++D+ KTKY+ T + + L+IDG Q++ NF+ N Sbjct: 227 KLIIVDDFSIDTFKTKYVAGLISNTVFPDSETHEKEIKDRGVLLIDGEQVNANFERGVFN 286 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + L + G+NVYD+LR K+V+SKS +E L ++ Sbjct: 287 LHYADYLSIDGLNVYDMLRREKVVISKSGLETLTKKY 323 >gi|319789239|ref|YP_004150872.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1] gi|317113741|gb|ADU96231.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1] Length = 208 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V +L+ ++ G + + ++I +Q + ++WQ ++R G +K R EV G Sbjct: 1 MEIKVVDLNNKETGTVQIKDEIANAPIKQHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRAR S Q+ GGG GP P + LPKKVR +AL+ ++ + Sbjct: 61 RKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYSYNLPKKVRKVALKSVVAGRIQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +V+++ ++ KTK V + L L N+ L++ +LD N L+ RN+PN+ +LPV+ Sbjct: 121 NFIVVEDFSFEKPKTKQAVEFLKNLGLENSKVLLVVPAELDENTYLSFRNLPNVKVLPVE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL K V+ KS + +E+R Sbjct: 181 GLNVYDILCYDKCVVFKSILPKIEERL 207 >gi|257431697|ref|ZP_05608060.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus E1410] gi|257282576|gb|EEV12708.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus E1410] Length = 207 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTLVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEE 204 >gi|78357299|ref|YP_388748.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109893592|sp|Q30Z43|RL4_DESDG RecName: Full=50S ribosomal protein L4 gi|78219704|gb|ABB39053.1| LSU ribosomal protein L4P [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 206 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + D ++ G ++++ ++F ++ + IL V+R Q KR G K RS ++ Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KKVR LAL+ ALS + Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV+ + E KTK++V AL L AL++ ++D L+ARNIP I L+ + Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALGLGKALVVT-PEMDDKLVLSARNIPGITLMTPEQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V++IL+ ++LVL + A+E +++R K Sbjct: 180 LSVFEILKHAQLVLLEGAVEPVQERLK 206 >gi|258509481|ref|YP_003172232.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG] gi|257149408|emb|CAR88381.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus GG] gi|259650760|dbj|BAI42922.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG] Length = 207 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII--DGCQLDRNFQLAARNIPNINLLP 177 D++V+D L KTK + + +++ AL++ DG + AARN+PN+ ++P Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGIKVNDKALVVLEDGNDVAAK---AARNLPNVKVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +GINV D + KL+L++SA++ +E+ Sbjct: 178 AEGINVLDAVNYKKLILTQSALQKIEE 204 >gi|77918316|ref|YP_356131.1| 50S ribosomal protein L4 [Pelobacter carbinolicus DSM 2380] gi|109893615|sp|Q3A6P6|RL4_PELCD RecName: Full=50S ribosomal protein L4 gi|77544399|gb|ABA87961.1| LSU ribosomal protein L4P [Pelobacter carbinolicus DSM 2380] Length = 206 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V +++ +S+++F + ++ ++ ++R+Q +R G S +K RS VA Sbjct: 1 MAKIAVYDINRNQVSERELSDEVFNAEVKEYLIHDMVRYQLAARRQGTSAAKNRSAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + F GGG AFGP P L +KV+ ALR ALS +F Sbjct: 61 GKKPYRQKGTGNARQGTIRAPHFVGGGAAFGPSPRDFSFKLNRKVKKAALRSALSARFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++ ++ TK +V +LSN L++ G + +RN +L+ARN+P++ +L +G Sbjct: 121 ERVAVLNDFQLEKIGTKAVVEVLNRFELSNVLVVVG-EDNRNLELSARNLPHVKVLKAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NVYD++ LV+++ A+E LE Sbjct: 180 VNVYDLMNHRNLVVTEGAVEQLE 202 >gi|289423702|ref|ZP_06425501.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius 653-L] gi|289155952|gb|EFD04618.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius 653-L] Length = 207 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G++ G I +++ IF ++ + +L ++ Q KR G +K R+EV Sbjct: 1 MPKINVLNVSGQNVGEIELNDSIFDIEVNEHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P ++LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L + KTK +V F+ ++ + ++ + D N + RNI N+ V Sbjct: 121 KEIIVLDALSLEAPKTKEIVNLFKNVNAAKKTLVVTAENDVNVVKSVRNIEGANVAHVST 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL C +++ A++ +E+ + Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206 >gi|81429376|ref|YP_396377.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K] gi|109893600|sp|Q38UR3|RL4_LACSS RecName: Full=50S ribosomal protein L4 gi|78611019|emb|CAI56071.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K] Length = 207 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ I+A++P + ++ + Q R G K RS V Sbjct: 1 MANVTLFKQDGSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII---DGCQLDRNFQLAARNIPNINLLP 177 ND++V+D+ KTK LD++ +++ DG L+ARN+PN+ ++P Sbjct: 121 NDLIVVDSFSFDAPKTKEFAEVLNKLDVNTKVLVVLEDGNDFT---ALSARNLPNVTVVP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 GINV D++ KL+L+++A+ +E+ Sbjct: 178 ADGINVLDVVGNQKLILTQAALSKIEE 204 >gi|16801841|ref|NP_472109.1| 50S ribosomal protein L4 [Listeria innocua Clip11262] gi|16804669|ref|NP_466154.1| 50S ribosomal protein L4 [Listeria monocytogenes EGD-e] gi|46908803|ref|YP_015192.1| 50S ribosomal protein L4 [Listeria monocytogenes str. 4b F2365] gi|217966170|ref|YP_002351848.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23] gi|224499304|ref|ZP_03667653.1| 50S ribosomal protein L4 [Listeria monocytogenes Finland 1988] gi|224503575|ref|ZP_03671882.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL R2-561] gi|226225176|ref|YP_002759283.1| ribosomal protein L4 [Listeria monocytogenes Clip81459] gi|254825008|ref|ZP_05230009.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194] gi|254829080|ref|ZP_05233767.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165] gi|254830937|ref|ZP_05235592.1| 50S ribosomal protein L4 [Listeria monocytogenes 10403S] gi|254854163|ref|ZP_05243511.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503] gi|254899918|ref|ZP_05259842.1| 50S ribosomal protein L4 [Listeria monocytogenes J0161] gi|254912876|ref|ZP_05262888.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818] gi|254931099|ref|ZP_05264458.1| ribosomal protein L4 [Listeria monocytogenes HPB2262] gi|254937256|ref|ZP_05268953.1| ribosomal protein L4 [Listeria monocytogenes F6900] gi|254991853|ref|ZP_05274043.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-064] gi|255017640|ref|ZP_05289766.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-515] gi|255022701|ref|ZP_05294687.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208] gi|255027145|ref|ZP_05299131.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-003] gi|255029694|ref|ZP_05301645.1| 50S ribosomal protein L4 [Listeria monocytogenes LO28] gi|255519641|ref|ZP_05386878.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-175] gi|284800483|ref|YP_003412348.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578] gi|284993669|ref|YP_003415437.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923] gi|290891816|ref|ZP_06554813.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071] gi|300763618|ref|ZP_07073616.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017] gi|46577145|sp|P61054|RL4_LISIN RecName: Full=50S ribosomal protein L4 gi|46577146|sp|P61055|RL4_LISMO RecName: Full=50S ribosomal protein L4 gi|67461151|sp|Q71WE7|RL4_LISMF RecName: Full=50S ribosomal protein L4 gi|254803741|sp|B8DB09|RL4_LISMH RecName: Full=50S ribosomal protein L4 gi|259491564|sp|C1KZH9|RL4_LISMC RecName: Full=50S ribosomal protein L4 gi|16412119|emb|CAD00709.1| ribosomal protein L4 [Listeria monocytogenes EGD-e] gi|16415316|emb|CAC98006.1| ribosomal protein L4 [Listeria innocua Clip11262] gi|46882076|gb|AAT05369.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. F2365] gi|217335440|gb|ACK41234.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23] gi|225877638|emb|CAS06352.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601490|gb|EEW14815.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165] gi|258607555|gb|EEW20163.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503] gi|258609862|gb|EEW22470.1| ribosomal protein L4 [Listeria monocytogenes F6900] gi|284056045|gb|ADB66986.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578] gi|284059136|gb|ADB70075.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923] gi|290558410|gb|EFD91927.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071] gi|293582646|gb|EFF94678.1| ribosomal protein L4 [Listeria monocytogenes HPB2262] gi|293590875|gb|EFF99209.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818] gi|293594249|gb|EFG02010.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194] gi|300515895|gb|EFK42944.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017] gi|307572220|emb|CAR85399.1| rplD [Listeria monocytogenes L99] gi|328469804|gb|EGF40721.1| 50S ribosomal protein L4 [Listeria monocytogenes 220] Length = 207 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEE 204 >gi|300088196|ref|YP_003758718.1| 50S ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527929|gb|ADJ26397.1| ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 210 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 115/202 (56%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N G+ ++VS+++FA+ ++ + + Q+ R G S ++ RSEV+ T Sbjct: 1 MEIPVYNTSGQVVRNVTVSDELFAVPMNDAVVHQAMVAQAANARQGTSSTRTRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM+ QKGTG AR S+ GGG FGP P +LPKK+R LA+R LSDK S Sbjct: 61 QKMFRQKGTGEARAGSRKSGLRPGGGVIFGPKPRDYSKSLPKKMRRLAIRCLLSDKVASG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+D L KT+ + AL++ ++ II +D N L+ARN+P + P I Sbjct: 121 SLKVVDALALDAPKTREMTQVLTALEIGSSAIIATAGVDENVVLSARNLPRVKTTPANLI 180 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 NV D+L+ L+L++ A+E ++ Sbjct: 181 NVGDLLKYDTLLLTEQALEVVQ 202 >gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group] Length = 197 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 109/186 (58%), Gaps = 1/186 (0%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y QKGTGRARH + Sbjct: 6 DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHGTLRGP 65 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 QFRGG GP P L KKVR L L+ ALS + ++V ++L KTK +V+ Sbjct: 66 QFRGGATMHGPKPRSHTIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVS 125 Query: 142 RFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + D L++DG +D+ +LA +N+ +N+LP G+NVY IL+ LV+++ A+ Sbjct: 126 YISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRDAVN 185 Query: 201 ALEDRF 206 + +R Sbjct: 186 RIVERM 191 >gi|51894209|ref|YP_076900.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863] gi|81610342|sp|Q67JU4|RL4_SYMTH RecName: Full=50S ribosomal protein L4 gi|51857898|dbj|BAD42056.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863] Length = 207 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N +G G I++S+ +F + G+L V++ KR G + +K R+EV+ Sbjct: 1 MPKVAVYNKEGATVGEITLSDAVFGAEVNPGLLHEVVQMYLANKRQGTADTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P ++PKK R ALR ALS K S Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPREYGWSMPKKARRAALRQALSAKVKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D + KT+ + T + L + + I Q D N +ARNIP + + + Sbjct: 121 GELIVVDKFELEAPKTREVATLLKNLKVDGSAFIVTAQEDVNIYKSARNIPGVRVNAARN 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N YD+L SKLV ++ A+ +E+ Sbjct: 181 LNAYDVLAASKLVFTQDAVAKVEE 204 >gi|116748991|ref|YP_845678.1| 50S ribosomal protein L4/L1e [Syntrophobacter fumaroxidans MPOB] gi|166199918|sp|A0LIJ1|RL4_SYNFM RecName: Full=50S ribosomal protein L4 gi|116698055|gb|ABK17243.1| LSU ribosomal protein L4P [Syntrophobacter fumaroxidans MPOB] Length = 207 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 117/204 (57%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N + + G + +S+ +FA+ + +L V+ +Q ++R G K+KGRS+VA Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGGG GP P +PKKVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D L ++ KT+ +LS L++ Q D Q +ARNIPN+ +L +G Sbjct: 121 RELTVLDQLQLEQIKTRDFAAILDRFELSKTLVVI-AQPDEKLQKSARNIPNVKVLRTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+L ++L++ I +E+ Sbjct: 180 LNVYDLLNHRSVLLTRETIGKIEE 203 >gi|297836242|ref|XP_002886003.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata] gi|297331843|gb|EFH62262.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata] Length = 297 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 116/204 (56%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 88 IPVTNFQSEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 147 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 148 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 207 Query: 124 MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + ++ L+++G +D +LA +N+ +N++P G+N Sbjct: 208 LVFDDLALPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 267 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S+ A+ + +R Sbjct: 268 VYSILLHDTLVMSRDAVNKIVERM 291 >gi|223983922|ref|ZP_03634082.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM 12042] gi|223964114|gb|EEF68466.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM 12042] Length = 209 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/200 (38%), Positives = 110/200 (55%), Gaps = 2/200 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V NL+ ++ I ++E +F ++P Q ++ L Q R G +K R EV+ Sbjct: 1 MPKLNVYNLEAKEIREIELAEAVFGIEPNQQVMFDALIMQRANMRQGTHDTKSRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG AFGP P + L +KVR LALR LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGIAFGPTPRSYAYRLNRKVRRLALRSLLSEKVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D L KTK V A + D + N ++ RNIPN LL V Sbjct: 121 NNLVVVDALKFDAIKTKEFVKVMDAFKFEGKTLFVADIAEDFDNAFMSLRNIPNAALLTV 180 Query: 179 QGINVYDILRCSKLVLSKSA 198 + +N +DI KLV++++A Sbjct: 181 EELNAFDIANAQKLVMTEAA 200 >gi|283796558|ref|ZP_06345711.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1] gi|291075972|gb|EFE13336.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1] gi|295092548|emb|CBK78655.1| LSU ribosomal protein L4P [Clostridium cf. saccharolyticum K10] Length = 204 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + LAL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYTIRLNKKEKRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK + L + AL++ D N L+ARNIP + V Sbjct: 121 NKFIVVDELSFAEIKTKKFAEVLKNLKVEKALVVGA---DANAALSARNIPAVKTASVNT 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 178 INVYDILKYNTVVATKAAVASIEEVY 203 >gi|228474532|ref|ZP_04059263.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis SK119] gi|314935833|ref|ZP_07843185.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis subsp. hominis C80] gi|228271195|gb|EEK12563.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis SK119] gi|313656398|gb|EFS20138.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ ++D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NNFTIVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +++++SA + +E+ Sbjct: 181 LNVLDITSADSVIITESAAKKVEE 204 >gi|317126862|ref|YP_004093144.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522] gi|315471810|gb|ADU28413.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +SE IF ++P + +L + Q +R G +KGRS+V Sbjct: 1 MPKVTLYNQTGSQVGDIELSEAIFGIEPNESVLFDAVVMQQASQRQGTHATKGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + +PKK R LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPQPRSYAYKIPKKQRRLALKSALSSKVNA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V++ L KTK + L + ++ + L+ARNIP + + +G Sbjct: 121 DEILVLEGLNFDSPKTKEMKAVLSGLSVGRKALVVTADYNDAVALSARNIPGVKFITAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+L +L++++ A++ +E+ Sbjct: 181 VNVLDLLNYDQLIITQDAVKKVEE 204 >gi|225850736|ref|YP_002730970.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1] gi|225645048|gb|ACO03234.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1] Length = 207 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N+ E+ G + +S+ +F + ++ + V++WQ +R G + +K R+EV + Sbjct: 1 MEANVVNIKKENVGTVQLSDAVFNTEVKEHTVWEVIKWQLASRRAGTASTKTRAEVRGSR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKGTG ARH + + F GGG GP P +ALPKKVR AL+ LS K Sbjct: 61 RKILPQKGTGNARHGDRKANIFVGGGVVHGPHPRDYYYALPKKVRKKALKGVLSMKLRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ VI++ E KTK + + DL A +++ + D N + RN+P +L V+G Sbjct: 121 ELTVIEDFTFDEPKTKKAIEVLKNFDLDKAKVLLVLAEKDMNVIKSFRNLPKAKVLLVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YDIL ++++KSA+E + +R Sbjct: 181 LNTYDILNADHVLVTKSAVEKINERL 206 >gi|34811556|pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. gi|34811609|pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx Length = 197 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 4/176 (2%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 G+L V+ WQ +R G + ++ R++V+ TG KMY QKGTG ARH +SV F GGG AF Sbjct: 24 GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAF 83 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT--RFRALDL 148 GP P + LP++VR L L A++ + ++ +D + KTK ++ + LD Sbjct: 84 GPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDG 143 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + +++ D N + AARN+ +++LPV G+NVYDILR +LV+ +A+E +E+ Sbjct: 144 TEKVLL--VTDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE 197 >gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966454|pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966507|pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966560|pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400 Length = 198 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 4/176 (2%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 G+L V+ WQ +R G + ++ R++V+ TG KMY QKGTG ARH +SV F GGG AF Sbjct: 25 GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAF 84 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT--RFRALDL 148 GP P + LP++VR L L A++ + ++ +D + KTK ++ + LD Sbjct: 85 GPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDG 144 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + +++ D N + AARN+ +++LPV G+NVYDILR +LV+ +A+E +E+ Sbjct: 145 TEKVLL--VTDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE 198 >gi|297569421|ref|YP_003690765.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2] gi|296925336|gb|ADH86146.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2] Length = 207 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V N+ E G + + + +F ++ +L ++R Q +R G + +K R +V+ + Sbjct: 1 MAVTEVYNIKKEKVGDVELDDALFGVEVNPHLLHDIVRMQRANRRAGTACTKTRKDVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S+ +RGGG FGP P ++P+K R L LR ALS + Sbjct: 61 GKKPWRQKGTGRARAGSRKSPVWRGGGTVFGPRPRSYAFSMPRKARKLGLRMALSSRCAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+ E KTK V + NALI+ ++ + ++RN+P ++P +G Sbjct: 121 NLLVVLDDFQLDEIKTKKFVEVMDGFSIDNALIVVPESIE-TLERSSRNVPGFKVMPTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +VL + IE L +R Sbjct: 180 LNVYDILLHKHIVLLQPCIEQLRERL 205 >gi|309789666|ref|ZP_07684247.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6] gi|308228402|gb|EFO82049.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6] Length = 220 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 3/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ N GE G I+++E IF ++P ++ + + Q R+G ++GR EV+ + Sbjct: 1 MEATLYNQAGEQIGSIALNESIFGIEPNVPVMHQYVVMQRANARLGTHNTRGRGEVSGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S GGG A GP P +PKK+R LA+R ALS K +N Sbjct: 61 KKLYRQKGTGRARQGSIRAPHRMGGGIAHGPHPRSYRLNMPKKMRRLAVRSALSAKLAAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR---NFQLAARNIPNINLLPV 178 I +D L ++ +TK +V +A LS +I Q + N +L+A N+P++ +L Sbjct: 121 QIRFVDALTLEKPRTKDMVAFLKAHTLSGKTLIVIDQKNAQTGNVRLSANNLPDVQILLA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L C +VL K+A+ +E Sbjct: 181 HYLNVRDLLTCDTVVLPKAAVAVIE 205 >gi|21553676|gb|AAM62769.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 300 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 116/204 (56%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 91 IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210 Query: 124 MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + ++ L+++G +D +LA +N+ +N++P G+N Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S+ A+ + +R Sbjct: 271 VYSILLHDTLVMSRDAVNKIVERM 294 >gi|218282170|ref|ZP_03488469.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989] gi|218216849|gb|EEC90387.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989] Length = 209 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N G G I +++ +F ++P Q + L Q +R G + +KGRSEV+ Sbjct: 1 MATIDVINQTGAVVGSIELNDAVFGIEPHQQAMYDALVMQMASRRQGTADTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +QFRGGG FG P + + KKVR LA++ ALS+K Sbjct: 61 GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRNYAYRINKKVRRLAVKSALSEKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 V+D E KTK V+ A+ ++ + N L+ARNI ++ Sbjct: 121 TAFSVLDKFEIAEPKTKTFVSIIEAIQAPKKTLFVVADSEEATNVYLSARNIAGATVMAA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 IN YD++ +K+V++ +A++ +E+ Sbjct: 181 SAINTYDLVNANKVVMTSAAVKQVEE 206 >gi|28212174|ref|NP_783118.1| 50S ribosomal protein L4 [Clostridium tetani E88] gi|46577246|sp|Q890P0|RL4_CLOTE RecName: Full=50S ribosomal protein L4 gi|28204618|gb|AAO37055.1| LSU ribosomal protein L1E(= L4P) [Clostridium tetani E88] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G +S+ +F ++ + +L +V+ Q KR G SK R+EV+ Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK ++ +A++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+++++L + KTK +V A + LI+ + ++N +ARNI + +LPV Sbjct: 121 NEIVILESLEADAPKTKEIVKMLAAFNAKKTLIVT-EESNKNIYKSARNIEGVTVLPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDILR K +++K A+ +E+ + Sbjct: 180 INVYDILRYDKFIITKDAVSKIEEVY 205 >gi|224477219|ref|YP_002634825.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus TM300] gi|254803753|sp|B9DM18|RL4_STACT RecName: Full=50S ribosomal protein L4 gi|222421826|emb|CAL28640.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P + ++ + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDSVFAIEPNKDVIFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D + KTK L+L +++ D N +L+ARNIP + + V G Sbjct: 121 NGFTVVDAFGLEAPKTKEFTKVLSNLELPKKVLVVTESEDVNVELSARNIPGVQITTVTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDITSADSVLITEAAAKKVEE 204 >gi|227512865|ref|ZP_03942914.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577] gi|227522993|ref|ZP_03953042.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290] gi|227083865|gb|EEI19177.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577] gi|227089811|gb|EEI25123.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +S+++DIF ++P ++ + Q +R G K RS V Sbjct: 1 MTDVALYKQDGSQNGTVSLNDDIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+LV + KTK L++S +I + L+A N+ N+ ++ G Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEE 204 >gi|223042572|ref|ZP_03612621.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14] gi|314934296|ref|ZP_07841655.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87] gi|222444235|gb|EEE50331.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14] gi|313652226|gb|EFS15989.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGFTVVDSFGFDAPKTKEFKNVLSTLEQPKKVLVVTEDEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEE 204 >gi|294463048|gb|ADE77062.1| unknown [Picea sitchensis] Length = 323 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V N+ EDKG+I ++ D+F + ++ I+ RV+RWQ ++R G +K SEV+ TG Sbjct: 112 LTLRVTNMRNEDKGMIVLAGDVFDVPIRKDIIHRVVRWQLAKRRQGTHSTKTISEVSGTG 171 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG+ARH + QFR G GP P L KKVR L L+ ALS + Sbjct: 172 RKPWPQKGTGKARHGTLRGPQFRHGATMHGPKPRSHAIKLQKKVRRLGLKIALSARAAEG 231 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV D KTK + L+ L+++G +++ LA +N+ N+LP G Sbjct: 232 KLMVFDTFDLTTHKTKEVAKYVSQLENCKKILLVEGGPVNKKLGLATQNLHYANVLPSIG 291 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY IL+ LV++ A+ + +R Sbjct: 292 LNVYSILQHDTLVMTADAVNRIVERM 317 >gi|282926795|ref|ZP_06334422.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102] gi|282591246|gb|EFB96319.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLCQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEE 204 >gi|226309809|ref|YP_002769703.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599] gi|254803719|sp|C0ZII1|RL4_BREBN RecName: Full=50S ribosomal protein L4 gi|226092757|dbj|BAH41199.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599] Length = 207 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 115/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P +L + Q +R G K RSEV Sbjct: 1 MPKVALYNQTGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + L +KVR LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++ L KTK + +L + ++I + D+N LA+RNIP ++ G Sbjct: 121 NELLVLEALNFAAPKTKEMTAVLSSLKVDRKVLIVTSEYDQNVALASRNIPGTKIVDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ K+++++ A+ +E+ Sbjct: 181 INVLDLVAHDKVIVTREAVAKVEE 204 >gi|227530206|ref|ZP_03960255.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540] gi|227349881|gb|EEJ40172.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540] Length = 207 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ DIF ++P + + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIDLNADIFGIEPNENAEFEAILRQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P ++LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L ++ +++ D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMDNLKVAEKVLVVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ ++ K+V++KSA+ +E+ Sbjct: 181 VNILSVVDSQKIVITKSALSQVEE 204 >gi|73661973|ref|YP_300754.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581595|sp|Q49ZG7|RL4_STAS1 RecName: Full=50S ribosomal protein L4 gi|72494488|dbj|BAE17809.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGTKSGSVELSDAVFAIEPNNNVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D L KTK T L+ +++ D N L+ARNIP + + QG Sbjct: 121 KGLTVVDALNLDAPKTKEFKTVLSNLEQPKKVLVVTESEDVNVALSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +V+++SA + +E+ Sbjct: 181 LNVLDITSADSVVITESAAKKVEE 204 >gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190538|gb|EEI70605.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 207 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +S+++D+F ++P ++ + Q +R G K RS V Sbjct: 1 MTDVALYKQDGSQNGTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+LV + KTK L++S +I + L+A N+ N+ ++ G Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEE 204 >gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens] Length = 269 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N EDKG+ +++ D+F + + ++ RV+RWQ ++R G + +KG EV+ TG Sbjct: 57 VEVKVTNFQSEDKGLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHEVSGTG 116 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+GRARH S QFRGG GP P L K+VR L L+ ALS + Sbjct: 117 RKPGPQKGSGRARHGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRRLGLKVALSSRVAEG 176 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQ 179 + V D++ KT+ + ++ LI+D + ++ + A N+ +N+LP + Sbjct: 177 KLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCRATGNLHYVNVLPAK 236 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY IL+ LV+S AI +E+R Sbjct: 237 GLNVYSILQHDTLVMSVGAIRRIEERL 263 >gi|167519925|ref|XP_001744302.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777388|gb|EDQ91005.1| predicted protein [Monosiga brevicollis MX1] Length = 229 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 5/195 (2%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQS--WRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 GV+ + +F + + I+ RV+ WQ WRK G +K+K R EV G K + QKGTGR Sbjct: 14 GVMELDPTVFGEEIRVDIMHRVVVWQRALWRK--GNAKTKTRGEVRGGGRKPHPQKGTGR 71 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR S V +RGGG GP+P LP+KVR +R A+S ++ ND++++D+LV Sbjct: 72 ARTGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVAISTRYQQNDLVIVDDLVLP 131 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDR-NFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK L L +AL + G D N + A RN+P + G +VY+IL+ K Sbjct: 132 TLKTKSLAEIAAQHRLESALFVYGHDEDSMNLKWACRNMPAFHATSAAGAHVYNILKHDK 191 Query: 192 LVLSKSAIEALEDRF 206 LVLS SA+ LE R Sbjct: 192 LVLSVSAVRDLERRL 206 >gi|298243967|ref|ZP_06967774.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963] gi|297557021|gb|EFH90885.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V N+ GE + +SE +F + P +L +V+ Q +R G + +K RSEV+ Sbjct: 1 MPSTTVYNMAGEAVEQLELSEQVFGVTPNMAVLHQVVTAQLVNRRQGNASTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K Y QKGTGRAR S QFRGGG FGP P H +PKK+R LA+R LSDK + Sbjct: 61 NKKPYRQKGTGRARQGSTRAPQFRGGGTVFGPKPHPYHHDVPKKMRRLAIRSVLSDKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++++ L + +TK ++ + L S +++ + D N L+ RNIP+ + V Sbjct: 121 QSLIIVNKLEMETPRTKDMLELLKKLPSSEGKKVLMMLPKRDENVVLSTRNIPSAKVQHV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INV ++L+ +V++ + +E F Sbjct: 181 SSINVVELLKHDYIVMTPKTVRWIELVF 208 >gi|18399235|ref|NP_565463.1| ribosomal protein L4 family protein [Arabidopsis thaliana] gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|330251866|gb|AEC06960.1| large subunit ribosomal protein L4 [Arabidopsis thaliana] Length = 300 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 116/204 (56%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 91 IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210 Query: 124 MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + ++ L+++G +D +LA +N+ +N++P G+N Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL L++S+ A+ + +R Sbjct: 271 VYSILLHDTLLMSRDAVNKIVERM 294 >gi|27468741|ref|NP_765378.1| 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228] gi|57867722|ref|YP_189393.1| 50S ribosomal protein L4 [Staphylococcus epidermidis RP62A] gi|242243948|ref|ZP_04798391.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144] gi|251812048|ref|ZP_04826521.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060] gi|282875343|ref|ZP_06284216.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis SK135] gi|293368434|ref|ZP_06615058.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W2(grey)] gi|46577254|sp|Q8CRG1|RL4_STAES RecName: Full=50S ribosomal protein L4 gi|81673579|sp|Q5HM00|RL4_STAEQ RecName: Full=50S ribosomal protein L4 gi|27316289|gb|AAO05464.1|AE016750_69 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228] gi|57638380|gb|AAW55168.1| ribosomal protein L4 [Staphylococcus epidermidis RP62A] gi|242232581|gb|EES34893.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144] gi|251804382|gb|EES57039.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060] gi|261264939|gb|ACX55828.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] gi|281296108|gb|EFA88629.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis SK135] gi|291317392|gb|EFE57814.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W2(grey)] gi|319400622|gb|EFV88847.1| 50S ribosomal protein L4 [Staphylococcus epidermidis FRI909] gi|329736448|gb|EGG72716.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU028] gi|329737013|gb|EGG73268.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU045] Length = 207 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEE 204 >gi|259500893|ref|ZP_05743795.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335] gi|302190654|ref|ZP_07266908.1| 50S ribosomal protein L4 [Lactobacillus iners AB-1] gi|309803686|ref|ZP_07697776.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d] gi|309804951|ref|ZP_07699009.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c] gi|309806704|ref|ZP_07700699.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b] gi|309808465|ref|ZP_07702364.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a] gi|309809135|ref|ZP_07703008.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D] gi|312871314|ref|ZP_07731412.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a] gi|312872623|ref|ZP_07732688.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1] gi|312874014|ref|ZP_07734049.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d] gi|312874786|ref|ZP_07734805.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b] gi|315654025|ref|ZP_07906941.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195] gi|325912358|ref|ZP_08174754.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D] gi|325913218|ref|ZP_08175587.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B] gi|329920653|ref|ZP_08277340.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G] gi|259167587|gb|EEW52082.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335] gi|308164284|gb|EFO66541.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d] gi|308165711|gb|EFO67936.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c] gi|308166884|gb|EFO69068.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b] gi|308168293|gb|EFO70412.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a] gi|308170580|gb|EFO72600.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D] gi|311089531|gb|EFQ47956.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b] gi|311090354|gb|EFQ48763.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d] gi|311091665|gb|EFQ50044.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1] gi|311093328|gb|EFQ51674.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a] gi|315488721|gb|EFU78367.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195] gi|325475829|gb|EGC78999.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D] gi|325477482|gb|EGC80625.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B] gi|328935911|gb|EGG32371.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G] Length = 204 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V + G+ G + +++ IF ++P ++ + Q KR G +K RS V+ G Sbjct: 1 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D L KTK L F A+ +S +++ D+N QL+ +N+P + ++PV G+ Sbjct: 121 NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLV--VSDDKNVQLSGKNLPQVKVVPVNGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 NV D + KL+L++ AI+ +E+ Sbjct: 179 NVVDAVDYEKLLLTQDAIKRIEE 201 >gi|302344355|ref|YP_003808884.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075] gi|301640968|gb|ADK86290.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075] Length = 206 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 113/204 (55%), Gaps = 1/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + + G I +++++FA + + +L V+ WQ ++R G + +K RSEV Sbjct: 1 MPKVDVYDEKKQKVGEIELADEVFAAEVKAHLLHEVVVWQLAKRRAGTACTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S+ +RGGG GP P + +PKKVR AL+ ALSDK Sbjct: 61 GRKPWRQKGTGRARVGSRRSPLWRGGGTTHGPKPRDYDYNVPKKVRKAALKSALSDKLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ + KTK N L++ D + +ARNIP + +L +G Sbjct: 121 EKLMVLRGFGLEAIKTKAFAEVLATFQTQNVLVVTAGP-DEVLEKSARNIPMVKVLRAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDILR +L+L + A+ +E+ Sbjct: 180 LNVYDILRYDRLMLLEPAVGRIEE 203 >gi|261264935|gb|ACX55826.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 207 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEE 204 >gi|319893199|ref|YP_004150074.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius HKU10-03] gi|317162895|gb|ADV06438.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius HKU10-03] gi|323463753|gb|ADX75906.1| ribosomal protein L4 [Staphylococcus pseudintermedius ED99] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVYKVDGSKAGTVELSDSVFGIEPNNDVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYGYKMPKKMRRLALRSALSYKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D+ + KTK T L+L +++ D N +L+ARNIP + + +G Sbjct: 121 NGFKIVDSFNLEAPKTKEFKTTLTNLELPKKVLVVTVGEDVNVELSARNIPGVTITTPEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV ++ +++++ A + +E+ Sbjct: 181 LNVLELTHADSVLITQEAAKKVEE 204 >gi|329731224|gb|EGG67594.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU144] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVDLNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEE 204 >gi|260893371|ref|YP_003239468.1| ribosomal protein L4/L1e [Ammonifex degensii KC4] gi|260865512|gb|ACX52618.1| ribosomal protein L4/L1e [Ammonifex degensii KC4] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V NL GE G + + E++F ++P ++ V+ +R G +K R EV Sbjct: 1 MPKATVYNLAGEPVGEMELKEEVFGIEPNPYVVHEVVVMHLANRRRGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P + +PKKVR LAL+ LSDK + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRKGGVVFGPKPRDYDYTVPKKVRRLALKSVLSDKLRA 120 Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++V++ L + KTK L++RF + +++ G D +LA N+ + LP Sbjct: 121 GNLVVLEELRLEAPKTKLAKELLSRF---GVETGVLLVGADPDPVVKLATANLEGVKFLP 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 V +NVYD+LR K+ +++ A+ +E+ Sbjct: 178 VNNLNVYDLLRYPKVFITREALARVEE 204 >gi|317131370|ref|YP_004090684.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3] gi|315469349|gb|ADU25953.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N+ GE G I +++ +F ++P + L V+ +R G + RSEV+ Sbjct: 1 MPKATVFNIAGEQVGEIELADSVFGIEPNKTALHTVVVNYLANQRQGTQSTLTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++ GG A GP P + + KKVR LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWKHGGIALGPKPRSYTYTVNKKVRRLALKSALSAKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D + E KTK +VT + S + ++ N +ARNIP + Sbjct: 121 GELVVLDAISLPEIKTKQVVTILSKFETSKKALFVTAGVNENLVKSARNIPGVKTASTGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +K +SK A+ ALE+ + Sbjct: 181 LNVYDLLDSNKFFISKDAVAALEEVY 206 >gi|295694838|ref|YP_003588076.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912] gi|295410440|gb|ADG04932.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N GE G + +SE +F + + +L + + Q R G +K R+ V Sbjct: 1 MPKVAVYNAAGEQVGELELSEKVFGVDVKPAVLHQAVVAQLANARQGTRATKNRALVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LPKK+R LA+R ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWVGGGTVFGPQPRDFSMRLPKKLRRLAIRGALSSKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L + KTK ++ L + ++ G L++ L+ARNIP + LP Sbjct: 121 GSLIVLDSLQIEAPKTKEMIRILSNLKVPGKALVVGEGLNQPAHLSARNIPGVKYLPATD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L LV++ +A++ +E+ F Sbjct: 181 INVVDLLHHDHLVVTTAAVKRIEEVF 206 >gi|94266252|ref|ZP_01289959.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1] gi|93453178|gb|EAT03642.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N E G I +++ + L+ +L ++R Q +R G + +K R EV+ + Sbjct: 1 MAVTEIYNTSKEKVGEIDLNDQLVKLEVNPHLLHDIVRMQRANRRAGTAATKTRKEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR ++ +RGGG FGP P +P+K R L LR A+S ++ Sbjct: 61 SKKPWRQKGTGRARAGTRKSPVWRGGGTVFGPQPRDYSFRMPRKARRLGLRMAISARYQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+++ E KTK V + NALI+ +L+ N + ++RN+P +LP +G Sbjct: 121 DMLLVLEDFQLDEIKTKKFVEVMDNFAIDNALIVVAERLE-NLERSSRNVPGFKVLPAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL ++L K ++ LE+R Sbjct: 180 LNVYDILLHKHIILLKPSVGQLEERL 205 >gi|325663061|ref|ZP_08151511.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086668|ref|ZP_08335745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470515|gb|EGC73745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409834|gb|EGG89269.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 206 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + +L + Q KR G K+K RSEV Sbjct: 1 MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLLHMAVVSQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +V+D + E KTK L+++ AL++ DG ++N +L+ARNIP++ Sbjct: 121 KKFIVLDEINFGEIKTKNFQNVLNNLNVAKALVVLEDG---NKNAELSARNIPSVKTART 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+E +E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVETIEEVY 205 >gi|148544695|ref|YP_001272065.1| 50S ribosomal protein L4 [Lactobacillus reuteri DSM 20016] gi|184154048|ref|YP_001842389.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112] gi|194466952|ref|ZP_03072939.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23] gi|227363818|ref|ZP_03847925.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3] gi|227543622|ref|ZP_03973671.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A] gi|300909349|ref|ZP_07126810.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri SD2112] gi|325683029|ref|ZP_08162545.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A] gi|166990950|sp|A5VLK4|RL4_LACRD RecName: Full=50S ribosomal protein L4 gi|226730679|sp|B2G8X7|RL4_LACRJ RecName: Full=50S ribosomal protein L4 gi|148531729|gb|ABQ83728.1| LSU ribosomal protein L4P [Lactobacillus reuteri DSM 20016] gi|183225392|dbj|BAG25909.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112] gi|194453988|gb|EDX42885.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23] gi|227071175|gb|EEI09491.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3] gi|227186462|gb|EEI66533.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A] gi|300893214|gb|EFK86573.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri SD2112] gi|324977379|gb|EGC14330.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A] Length = 207 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 112/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ +F ++P + ++ + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTVELNDAVFGVEPNENVVFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P ++LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK L+++ ++ D+N L+ARN+ N ++ G Sbjct: 121 NSFVVVDALNFDAPKTKEFADVMGNLNVAEKTLVVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ +++ K+V++KSA+ +E+ Sbjct: 181 VNILNVVDNQKIVITKSALSQVEE 204 >gi|255038090|ref|YP_003088711.1| 50S ribosomal protein L4 [Dyadobacter fermentans DSM 18053] gi|254950846|gb|ACT95546.1| ribosomal protein L4/L1e [Dyadobacter fermentans DSM 18053] Length = 209 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 119/209 (56%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G ++VSE++F ++P + ++ +R G KSK R+EV+++ Sbjct: 1 MELSVLNIKGEDTGKKVTVSEEVFGIEPSTHAIYLDVKLYLANQRQGTHKSKERAEVSHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV++LA R ALS K + Sbjct: 61 TRKIKRQKGTGGARAGSIKSPVFVGGGRIFGPRPRTYGFKLNKKVKALARRSALSVKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N + V++ KTK + +L L+N LI+ ++D N L++RNIP + Sbjct: 121 NAVSVLEAFTFDAPKTKSYLNVLNSLSLANTKTLLIL--PEIDNNVYLSSRNIPKAKVTT 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V +N YD++ +L++S+SAI LE + Sbjct: 179 VDSVNTYDLMNADRLLISESAISILETQL 207 >gi|255282606|ref|ZP_05347161.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens DSM 14469] gi|255266899|gb|EET60104.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens DSM 14469] Length = 206 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTMELSDAVFGVEINEHLVHMAVLSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK +V + ++ AL++ + D N ++ARNI + Sbjct: 121 NKLVVLDELKLDAIKTKSMVNVLKNVNAEKALVVLN-ENDENVVMSARNIAGVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV++K+A EA+E+ + Sbjct: 180 INVYDILKYNTLVMTKAAAEAIEEVY 205 >gi|291562767|emb|CBL41583.1| LSU ribosomal protein L4P [butyrate-producing bacterium SS3/4] Length = 206 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTIELNDAVFGVEVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGMVFAPTPRDYTITLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ D+N L+ARNIP + V Sbjct: 121 NKFVVVDELKFDEVKTKNFKAVMNNLKVSKALVVLADN-DQNTVLSARNIPEVKTSLVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVFDILKYNTVVATKAAVASIEEVY 205 >gi|258591317|emb|CBE67616.1| 50S ribosomal subunit protein L4 [NC10 bacterium 'Dutch sediment'] Length = 211 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 12/198 (6%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +++ E +F ++ V+R Q +R G + ++ RSEV G K + QKGTGRAR Sbjct: 18 VTLDEMVFGAVGPSHLMHDVVRMQLANRRQGTASTRRRSEVRGGGKKPWKQKGTGRARSG 77 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 ++ +RGGG FGP P + +P++VR+ ALR ALS+K + +V+D L E T Sbjct: 78 TRRSPLWRGGGTVFGPQPRSYAYEIPRQVRASALRTALSEKVRAGQFVVVDGLSLAEPST 137 Query: 137 ---KYLVTRF----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 K L+TR RAL + D D ++ RN+P++ L+P G+NVYDILR Sbjct: 138 KAFKALLTRLGVQGRAL-----FVTDQVHQDDAVSMSCRNLPDVTLVPTAGLNVYDILRH 192 Query: 190 SKLVLSKSAIEALEDRFK 207 L+++K A+ A+E+ +K Sbjct: 193 DTLIMTKGAVSAVEEAWK 210 >gi|94985966|ref|YP_605330.1| 50S ribosomal protein L4 [Deinococcus geothermalis DSM 11300] gi|166234661|sp|Q1IX73|RL4_DEIGD RecName: Full=50S ribosomal protein L4 gi|94556247|gb|ABF46161.1| ribosomal protein L4 [Deinococcus geothermalis DSM 11300] Length = 213 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 114/200 (57%), Gaps = 10/200 (5%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 N+ G++ G S+ D+ + P +L V+ WQ +R G + +K R+EV+ +G KMY Q Sbjct: 5 NVIGQNGGR-SIDLDLPEVNPH--VLHEVVTWQLAGRRRGTASTKTRAEVSRSGKKMYSQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTG ARH +SV F GGG AFGP P + LP+KVR L L AL+D+ + +D Sbjct: 62 KGTGNARHGDRSVPTFVGGGVAFGPKPRSYSYTLPRKVRQLGLAMALADRQQQGKLTAVD 121 Query: 128 NLVSKECKTKYLVT--RFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 + KTK V+ + LD S LI+ +L R AARN+ +LPV G+NVY Sbjct: 122 GF-GLDGKTKSFVSWAKENGLDGSERVLIVTDDELTRR---AARNVAWATVLPVAGLNVY 177 Query: 185 DILRCSKLVLSKSAIEALED 204 DILR +LV+ A+E ++ Sbjct: 178 DILRHERLVIDAVALEPAQE 197 >gi|225574701|ref|ZP_03783311.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM 10507] gi|225038091|gb|EEG48337.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM 10507] Length = 206 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G I +++ +F ++ + ++ + Q KR G K+K RSEV Sbjct: 1 MANVSVLNMEGNEVGTIELNDAVFGVEINEHLVHLAVVRQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + +K R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYSVKMNRKERLAALKSALTAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L + KTK + L AL++ +D+N L+ARNIP + V Sbjct: 121 NKLIVVDDLKFEAIKTKDMQNVLNNLKAEKALVVTPA-VDQNVVLSARNIPEVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ LVL+K A+ ++E+ + Sbjct: 180 INVYDVMKHKTLVLTKDAVASIEEVY 205 >gi|302669962|ref|YP_003829922.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316] gi|302394435|gb|ADL33340.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316] Length = 207 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGKIDLSDAIFGVEVNEHLVHMAVLQQLADNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP + KK + AL+ AL+DK + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTDKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L E KTK L+ + ++ D+N L+ARN+ N Sbjct: 121 NNIVVVDELKFDEIKTKRFAEVMNNLNATRKALVVLADNDQNVVLSARNLAEANTTLTNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+ LVL+K A+ +E+ + Sbjct: 181 LNVYDIVNARTLVLTKDAVAKIEEVY 206 >gi|297582451|ref|YP_003698231.1| 50S ribosomal protein L4/L1e [Bacillus selenitireducens MLS10] gi|297140908|gb|ADH97665.1| ribosomal protein L4/L1e [Bacillus selenitireducens MLS10] Length = 207 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + ++ + Q R G KGRS+V Sbjct: 1 MPKVNLYNQTGSQAGDIELNDAVFGIEPNESVVYDAIIMQQASMRQGTHAVKGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + + GGG FGP P + +PKK R LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGTNRSPIWVGGGVVFGPTPRSYAYNMPKKQRRLALKSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V++ L KTK + AL +++ + N L+ARN+PN+ + +G Sbjct: 121 DAIYVMEGLSFDAPKTKEMKKVLEALSAGKKVLVVTADYEDNVALSARNLPNVKFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ LV+++ A++ +E+ Sbjct: 181 VNVLDLVNFESLVITQDAVKQVEE 204 >gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens] gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens] Length = 220 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + WQ ++R G +K+K R EV G K + QKG+GRAR S FRGGG G Sbjct: 5 ILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGGTVHG 64 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P P+KVRS+A+R ALS KF D+ ++D+ + KT+ L + +A Sbjct: 65 PRPRSYDFTFPRKVRSMAIRVALSVKFAQGDLYIVDSFGLETHKTQNLKDLLDQRNWYSA 124 Query: 152 LIIDG-CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++DG +D N +LAARNI ++LP +NV+ +L+ LVLS A++ L++R Sbjct: 125 LLVDGNTYVDENLRLAARNIQKCDVLPSYALNVHMMLKRHALVLSLPALKILQERL 180 >gi|289548390|ref|YP_003473378.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484] gi|289182007|gb|ADC89251.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484] Length = 197 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 110/192 (57%), Gaps = 2/192 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + EDIF ++ ++ +L ++WQ +R G +K R+EV Y+G K+ QKGTG ARH Sbjct: 4 LQLREDIFGVEVKKHVLWEAVKWQLAARRQGTHSTKTRAEVNYSGRKILPQKGTGNARHG 63 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECK 135 + F GGG A GP P + LPKKVR LALR ALS K ++++D + + + K Sbjct: 64 ERGAPIFVGGGVAHGPKPRDYYYTLPKKVRKLALRMALSSKAKEGKVLLVDKVEIGEVPK 123 Query: 136 TKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK V + ++++ +++ Q D + RNIP +LPV G+NVYDIL L++ Sbjct: 124 TKKAVEFLKTHNVADQKVLLIVPQKDEVVIKSFRNIPTAKVLPVDGLNVYDILWADWLII 183 Query: 195 SKSAIEALEDRF 206 K A+ + +R Sbjct: 184 DKMALGKIYERL 195 >gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus] gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b [Rattus norvegicus] Length = 294 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV+ G K Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEVSGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 188 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 GLNVYSMLKHQTLVLTLPSVAFLEDKL 273 >gi|325288579|ref|YP_004264760.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271] gi|324963980|gb|ADY54759.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271] Length = 209 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G I ++E IF + P G++ V+ Q R+G + GRSEV Sbjct: 1 MPKVQVVNMQGSPVGEIELNERIFGVTPNIGVMHSVVVAQMANARVGTHSTLGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGGG FGP P +PKKV+ LAL ALS K Sbjct: 61 GRKPWRQKGTGRARAGTIRSPLWRGGGIVFGPKPRDYSKKVPKKVKRLALCSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D+L KTK +V A+ + ++ D+N QL+ARNI + + Sbjct: 121 SNLIVVDDLKFDAPKTKDMVKFLEAIKVDRKALVVTEGSDKNVQLSARNIQGVKTASAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L+ LV+SK A+ E+ + Sbjct: 181 INVVDLLKHDVLVISKQAVIKAEEVY 206 >gi|242371895|ref|ZP_04817469.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1] gi|242350402|gb|EES42003.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 104/204 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 V+D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 KGFTVVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTEGEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEE 204 >gi|239787564|emb|CAX84032.1| 50S ribosomal protein L4 [uncultured bacterium] Length = 217 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 119/205 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIE V + + +++S F + + +L RV+ +Q ++R+G + +K R EV Sbjct: 1 MIEFPVVDAANQTSHTVNLSSHAFGCEVRGDLLTRVVHYQLAKRRLGTASTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + Q+R GG FGP P + +K R+L LR ALS K + Sbjct: 61 GHKPYRQKGTGNARQGTIRAPQYRTGGVVFGPHPRDYSVKMNRKERALGLRTALSAKREA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ + E KT+ ++ L+ +N+++I + D + +ARN+P ++++ V G Sbjct: 121 EELIVLTDFGLTEIKTRSMLQVLTRLNAANSVLIVLPESDERIERSARNLPGVDVIQVDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NVYD+L KL+++++A++ LE R Sbjct: 181 VNVYDLLVHEKLLMTEAALQKLEAR 205 >gi|302388087|ref|YP_003823909.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1] gi|302198715|gb|ADL06286.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1] Length = 206 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F + + ++ + Q KR G K+K R+EV+ Sbjct: 1 MANVSVYNMEGKEVGTLELNDAVFGVDVNEHLVHMAVVSQLANKRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKERRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK T L +S AL++ G + N ++ARNI + Sbjct: 121 NKFIVVDELKFDEIKTKKFQTVLNNLKVSKALVVMG-EDSTNAVMSARNIAAVKTAFANT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ S +V +K+A+ A+E+ + Sbjct: 180 INVYDILKYSTVVATKTAVAAIEEVY 205 >gi|261264931|gb|ACX55824.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 207 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + Q GTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQNGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEE 204 >gi|225571553|ref|ZP_03780549.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM 15053] gi|225159630|gb|EEG72249.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM 15053] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTTKVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +V+D + E KTK + LD+S AL++ DG + N +L+ARNI ++ Sbjct: 121 KKFIVVDEIAFDEIKTKNFANVLKNLDVSKALVVLEDG---NTNAELSARNIADVKTAKT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVANIEEVY 205 >gi|163847924|ref|YP_001635968.1| 50S ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl] gi|222525804|ref|YP_002570275.1| 50S ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl] gi|163669213|gb|ABY35579.1| ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl] gi|222449683|gb|ACM53949.1| ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl] Length = 222 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ N GE G I VS+ IF ++P ++ + + Q+ R+G ++GR EV + Sbjct: 1 MQATLYNQAGEQVGAIEVSDYIFGIEPNVAVMHQYVVMQNANARLGTHNTRGRGEVKGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P A+P+K+R L +R ALS KF ++ Sbjct: 61 RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRLAMPRKMRRLGVRSALSAKFAAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDG-CQLDRNFQLAARNIPNINLLP 177 I +D L + +TK + +A L++ ++ID + N + +A N+P + L Sbjct: 121 QIRFVDELTFERPRTKDFIAFLKAHGLADKKTLVVIDSKSPANENLRRSANNLPQVKTLL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L +V+ K+A+E +E Sbjct: 181 AHYLNVRDLLVYDHIVMPKAAVEVVE 206 >gi|262197187|ref|YP_003268396.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365] gi|262080534|gb|ACY16503.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365] Length = 215 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 114/208 (54%), Gaps = 7/208 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L ++N GE G I + + IFA + + + V++WQ R+R G +K R EV + Sbjct: 1 MPKLDIKNTAGETVGDIDLDDAIFAEEVHEHLFWEVVKWQRARRRAGTHSTKRRGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K Y QKGTGRAR + + GGG FGP P +ALPKKVR ALR ALS + Sbjct: 61 NIKPYRQKGTGRARQGDRKAPHWVGGGSVFGPKPRSYDYALPKKVRKKALRSALSLRAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA----LIID-GCQLDRNFQLAARNIPNINL 175 ++V+D + KT+ +V+ AL ++ LI+D G LD RN+ Sbjct: 121 QKLVVLDAFPVEGGKTRNVVSALAALGAAHTDNRVLIVDAGDNLD--LIRGTRNLRGSKW 178 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALE 203 L +G+NVYDIL S LV++ + ++A+E Sbjct: 179 LAPEGLNVYDILDHSTLVMTSATVKAVE 206 >gi|148655336|ref|YP_001275541.1| 50S ribosomal protein L4/L1e [Roseiflexus sp. RS-1] gi|148567446|gb|ABQ89591.1| LSU ribosomal protein L4P [Roseiflexus sp. RS-1] Length = 223 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 111/199 (55%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N GE+ GVI +S+ +F ++P ++ + + Q R+G + GR EV + Sbjct: 1 MEARLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P A+P+K+R LA+R ALS ++ Sbjct: 61 RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRKYTKAMPRKMRRLAVRSALSARYRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +D L ++ +TK ++ AL+L+ +I Q D + +A N+PN+ L + Sbjct: 121 AITFLDRLTFEKPRTKDMIAVLNALNLTGKTLIVLDQKDEYVRRSANNLPNVKTLLAHYL 180 Query: 182 NVYDILRCSKLVLSKSAIE 200 NV D+L +V+ ++A++ Sbjct: 181 NVIDLLTHDHIVMLQAAVD 199 >gi|210623189|ref|ZP_03293628.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275] gi|210153726|gb|EEA84732.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275] Length = 207 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++G++ G I + + IF ++ + +L ++ Q +R G +K R+EV Sbjct: 1 MPKINVMNINGQNVGEIELCDSIFNVEVNEHVLYEAVKCQLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKCALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK V + S ++ + + N +ARNI + V Sbjct: 121 NEIIVLDALTMDAPKTKEFVAILNNIKASRKALVVTAEKNENVIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL V++ A++ +E+ + Sbjct: 181 LNVYDILNHDTFVITTDAVKKVEEVY 206 >gi|266620262|ref|ZP_06113197.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM 13479] gi|288868165|gb|EFD00464.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM 13479] Length = 206 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F + + ++ + Q KR G K+K R+EV+ Sbjct: 1 MANVSVYNMEGNEVGTLELNDAVFGVNVNEHLVHLAVVSQLANKRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIKLNKKERKLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ G N +ARNIP + V Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVLNNLKVSKALVVVGDD-STNAVKSARNIPAVKTAFVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ A+E+ + Sbjct: 180 INVYDILKYNTVVATKTAVAAIEEVY 205 >gi|225175673|ref|ZP_03729667.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1] gi|225169002|gb|EEG77802.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1] Length = 208 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N GE +G I +SE +FA K + + + + +R+G +K+K R+EV Sbjct: 1 MPKVALYNTAGEQQGEIELSEAVFASKVNEAAMHQAVLAYLANQRLGTAKTKDRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTGRARH S +RGGG FGP +LPKK+R LAL+ AL+ K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPDGRRNYKQSLPKKIRRLALKSALTSKVN 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++V+D L KTK +V L+ ++I N +ARNIP + Sbjct: 121 TGSLIVLDQLAMDAPKTKEMVQVLNNLNTGRKVLIITDTPQENVIKSARNIPGVKTTSTN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL LV+++ A+ +E+ F Sbjct: 181 QLNVYDILNTDNLVITRDAVVQVEEVF 207 >gi|184155990|ref|YP_001844330.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956] gi|227515488|ref|ZP_03945537.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931] gi|260662753|ref|ZP_05863647.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN] gi|226730678|sp|B2GDW8|RL4_LACF3 RecName: Full=50S ribosomal protein L4 gi|183227334|dbj|BAG27850.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956] gi|227086101|gb|EEI21413.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931] gi|260552834|gb|EEX25833.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN] Length = 207 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ +F+++ + + Q R G K RS V Sbjct: 1 MTSVALFKQDGSQNGTVELNDSVFSVEANESAEFDAILRQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P +ALP+KVR LA++ ALS K + Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPTPRSYNYALPRKVRQLAIKSALSQKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK L +S +++ D+N QL+ARN+P ++ G Sbjct: 121 DKFVVVDGLNFDAPKTKEFAGVMNNLKVSERVLVVVTDEDKNAQLSARNLPKTTVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ +++ K+++++SA+ +E+ Sbjct: 181 VNILNVVDAQKIIITQSALSQVEE 204 >gi|226323011|ref|ZP_03798529.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758] gi|225208578|gb|EEG90932.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758] Length = 206 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKERRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +V+D + E KTK L +S AL++ DG ++N +L+ARNI ++ Sbjct: 121 KKFIVVDEINFDEIKTKKFQDVLNNLSVSKALVVLEDG---NKNAELSARNIADVKTAKT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A++A+E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVQAIEEVY 205 >gi|313887073|ref|ZP_07820772.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica PR426713P-I] gi|312923484|gb|EFR34294.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica PR426713P-I] Length = 207 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKAKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N IMV+D L + KTK V+ ++ AL +DG Q++ L+ARNIP + Sbjct: 121 NQIMVLDQLSFETPKTKSFVS------MAKALNVDGQKTLYVVSQIEDTVALSARNIPGV 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N++ Q +N Y +L C K+V ++ A+ + + F Sbjct: 175 NIVRAQDLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group] Length = 273 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 11/202 (5%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV G +K SEV+ TG K Y Sbjct: 76 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRV----------GTHSTKTISEVSGTGRKPY 125 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 126 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 185 Query: 126 IDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V ++ L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 186 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 245 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV++++AI + +R Sbjct: 246 SILQHDTLVMTRNAINRIVERM 267 >gi|260886877|ref|ZP_05898140.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC 35185] gi|330839325|ref|YP_004413905.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185] gi|260863476|gb|EEX77976.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC 35185] gi|329747089|gb|AEC00446.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185] Length = 207 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N + G I +++ +F ++ G++ + + Q +R+G +K R V Sbjct: 1 MPKVAVYNSANQQVGDIELNDSVFGVEMNAGLVHQAVVMQLASRRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +PKK R LA++ ALSDK S Sbjct: 61 GRKPWRQKGTGRARSGSTRSPLWVGGGTVFGPQPRSYAFRMPKKQRRLAIKCALSDKVAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D+L KTK +V + +I + N +L++RNIP + + G Sbjct: 121 GDFIVLDDLQFDAPKTKSVVKMLGDFGVDAKSLIITLDENENVELSSRNIPGVKAINTMG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDIL +KL ++K+AIE +E+ Sbjct: 181 LNVYDILNHTKLFITKAAIEKIEE 204 >gi|330795906|ref|XP_003286011.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum] gi|325084009|gb|EGC37447.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum] Length = 258 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 IE + + D + G I +S+DIF+ + +L R++R+Q + + G ++ + Sbjct: 46 IEFPIIDFDSKSNVGTIQLSKDIFSRPLRIDLLHRMVRYQRAKSQQGTHQALNMERKTSS 105 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR + Q +GG +AF P H LPKKVR L L+ ALS K Sbjct: 106 NKKPFKQKGTGRARQGTNHAVQMKGGARAFPPTSRSHAHDLPKKVRQLCLKVALSSKLAQ 165 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +++ID KTK LV++ + +L++D + N ++ N+ I+ LP +G Sbjct: 166 NKLIIIDEFKLSSHKTKDLVSKL-PQEWGRSLLVDK-DISENLNRSSLNVQKIDTLPERG 223 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY IL+ LVL++S+IEAL+ R Sbjct: 224 LNVYSILQNDTLVLTRSSIEALQSRL 249 >gi|325294397|ref|YP_004280911.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064845|gb|ADY72852.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM 11699] Length = 208 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N ++ G +++ ++I ++ + ++WQ ++R G +K R EV G Sbjct: 1 MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRAR S Q+ GGG GP P + LPKKVR +ALR ++ + Sbjct: 61 KKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPKKVRKVALRSVVAGRLQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++ ++ KTK + R L L N ++I +L+ N + RN+PN+ LL ++G Sbjct: 121 NLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVVPELEENTYKSFRNLPNVKLLEIEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K + KS + LE+R Sbjct: 181 LNVYDMLCYDKCIFFKSTLPKLEERL 206 >gi|295109478|emb|CBL23431.1| LSU ribosomal protein L4P [Ruminococcus obeum A2-162] Length = 206 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L ALI+ D+N L+ARNI ++ V Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVLTNLKAEKALIVTAGD-DQNVVLSARNIADVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ S +V++K A+ ++E+ + Sbjct: 180 INVYDVMKHSTVVVTKDAVASIEEVY 205 >gi|20808659|ref|NP_623830.1| 50S ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4] gi|46577279|sp|Q8R7V5|RL4_THETN RecName: Full=50S ribosomal protein L4 gi|20517293|gb|AAM25434.1| Ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4] Length = 206 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE G I + + +F + ++ + + +R G +K R EV Sbjct: 1 MPKVPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D ++ KTK + + + +ALI+ Q ++N +L+ARN+PN L Sbjct: 121 NEIIVLDEFKLEQPKTKKVAELLKNFNAKSALIVV-PQGEKNVELSARNMPNAKALYANL 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ K +++K A+ +E+ F Sbjct: 180 LNTYDVLKYEKFIITKDAVAIVEEVF 205 >gi|302390959|ref|YP_003826779.1| 50S ribosomal protein L4P [Acetohalobium arabaticum DSM 5501] gi|302203036|gb|ADL11714.1| LSU ribosomal protein L4P [Acetohalobium arabaticum DSM 5501] Length = 209 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M EL++ + +G G + +++ IF ++ + ++ + Q KR G + +K R+EV Sbjct: 1 MPELTLFDAEGSQVGEVELNQSIFDVEINEHVVHEAVTAQLAAKRAGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P +PKKV+ LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWVGGGTTFGPQPRDYSKDIPKKVKRLAVKSALTAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ V+D + KTK +V ALD + +++ + D N +ARNIP++ +L Sbjct: 121 EELTVVDGFNFDQPKTKQMVKVLEALDAKDKKVLVITAEKDDNLYKSARNIPDVKVLLGS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +NVYD+L +++++K AI+ +E+ Sbjct: 181 AVNVYDVLDNEQIIITKEAIKKVEE 205 >gi|83591275|ref|YP_431284.1| 50S ribosomal protein L4P [Moorella thermoacetica ATCC 39073] gi|109893605|sp|Q2RFP8|RL4_MOOTA RecName: Full=50S ribosomal protein L4 gi|83574189|gb|ABC20741.1| LSU ribosomal protein L4P [Moorella thermoacetica ATCC 39073] Length = 207 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 116/204 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N+ G+ G + + + +F + + +L + Q +R G + ++G ++V+ Sbjct: 1 MPRVALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + LPKKVR LALR AL+ K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L ++ +TK + + L+ N ++ + N +L+ARN+P + L G Sbjct: 121 GNIIVLDELKMEKPRTKDMAHILKNLNAENKALVVTATREPNVELSARNLPGVRFLTSDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INVYD+L KLV++K A+ +++ Sbjct: 181 INVYDLLAHDKLVITKDAVARVQE 204 >gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] gi|237733229|ref|ZP_04563710.1| 50S ribosomal protein L4 [Mollicutes bacterium D7] gi|167703905|gb|EDS18484.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] gi|229383610|gb|EEO33701.1| 50S ribosomal protein L4 [Coprobacillus sp. D7] Length = 207 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ + V N +G + + ++E +F ++P + L ++ Q R G K K R+EV Sbjct: 1 MLTVKVYNQEGSEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ M ++ + KTK +V L+ +I ++ N +A NIP + LL + Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLEAPVKTLIVVDEICPNVARSANNIPGVKLLDAKH 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDIL +KL+++++AI+++E+ Sbjct: 181 VNVYDILNSNKLIMTEAAIKSVEE 204 >gi|42524374|ref|NP_969754.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100] gi|46576695|sp|P61061|RL4_BDEBA RecName: Full=50S ribosomal protein L4 gi|39576583|emb|CAE80747.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100] Length = 209 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N E G + ++ D+F ++ +L V++WQ +R G +K + V+ Sbjct: 1 MATVNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG AFGP P LPKKVR L L ALS Sbjct: 61 GKKPFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D++ S E KT L R +A L A+++D +D F A++N+P PV+G Sbjct: 121 GKLFIVDSMAS-EGKTAELNKRLQAFGLKKAVLVDSV-VDDKFNRASKNLPTFKYFPVEG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NV+D+L+ V++K ++ + DR Sbjct: 179 LNVFDLLKYDAAVITKDSVAKIVDR 203 >gi|218135280|ref|ZP_03464084.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC 43243] gi|217990665|gb|EEC56676.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC 43243] Length = 206 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGSLELNDAIFGVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTSRVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+V+D + E KTK + L L AL++ G D N L+ARNIP++ + Sbjct: 121 SKIVVLDEIKFNEIKTKNFANVMKNLKLDKALMVIGDN-DANVILSARNIPDVKVSQPNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ LV++K A+ +E+ + Sbjct: 180 INVYDILKYDTLVVTKDAVAKIEEVY 205 >gi|288818163|ref|YP_003432511.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6] gi|288787563|dbj|BAI69310.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6] gi|308751764|gb|ADO45247.1| ribosomal protein L4/L1e [Hydrogenobacter thermophilus TK-6] Length = 199 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 6/196 (3%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + + +D+F ++ ++ IL V++WQ +R G +K R E++Y+G K+ QKGTG AR Sbjct: 4 GDMELRDDVFNVEVKRHILWEVIKWQLACRRQGTHSTKTRGELSYSGRKLLPQKGTGNAR 63 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL----V 130 H + + F GGG A GP P ++LPKKVR L L+ ALS K +++ D++ V Sbjct: 64 HGDRGANIFVGGGVAHGPRPTDYYYSLPKKVRKLGLKMALSSKAQEGKMLLFDSINIGDV 123 Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 K K + D+ ++I + D + RN+PN+ +LP +G+NVYDIL Sbjct: 124 PKTKKAIEFLNSNGIKDIKVTIVI--PEKDEIVMKSFRNLPNVKVLPAEGLNVYDILWAD 181 Query: 191 KLVLSKSAIEALEDRF 206 L + K AIE + +R Sbjct: 182 VLAIQKQAIEKIYERL 197 >gi|259502532|ref|ZP_05745434.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041] gi|259169484|gb|EEW53979.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041] Length = 207 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ +F ++P Q + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L+++ ++ + D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALVVVTEDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ ++ K++++KSA+ +E+ Sbjct: 181 VNILNVADAQKVIITKSALSQVEE 204 >gi|15805341|ref|NP_294035.1| 50S ribosomal protein L4 [Deinococcus radiodurans R1] gi|45477175|sp|Q9RXK1|RL4_DEIRA RecName: Full=50S ribosomal protein L4 gi|16975049|pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975053|pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975057|pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975065|pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|20150343|pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|28948922|pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans gi|51247375|pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Quinupristin And Dalfopristin gi|190613492|pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large Ribosomal Subunit Of Deinococcus Radiodurans gi|190613522|pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit gi|190613553|pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit (50s) From Deinococcus Radiodurans gi|190613660|pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large Ribosomal Subunit Of Deinococcus Radiodurans gi|203282459|pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal Peptidyl-Transferase Center And Effect Trna Positioning gi|323714543|pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair Lankamycin And Lankacidin In Complex With The Large Ribosomal Subunit gi|323714573|pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair Lankamycin And Lankacidin In Complex With The Large Ribosomal Subunit gi|6457986|gb|AAF09893.1|AE001892_4 ribosomal protein L4 [Deinococcus radiodurans R1] Length = 205 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 4/171 (2%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 G+L V+ WQ +R G + ++ R++V+ TG KMY QKGTG ARH +SV F GGG AF Sbjct: 25 GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAF 84 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT--RFRALDL 148 GP P + LP++VR L L A++ + ++ +D + KTK ++ + LD Sbjct: 85 GPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDG 144 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + +++ D N + AARN+ +++LPV G+NVYDILR +LV+ +A+ Sbjct: 145 TEKVLL--VTDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAAL 193 >gi|29726790|pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 gi|29726821|pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Azithromycin gi|61680338|pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins: The Structure Of The 50s Ribosomal Subunit From Deinococcus Radiodurans In Complex With Tiamulin Length = 204 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 4/171 (2%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 G+L V+ WQ +R G + ++ R++V+ TG KMY QKGTG ARH +SV F GGG AF Sbjct: 24 GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAF 83 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT--RFRALDL 148 GP P + LP++VR L L A++ + ++ +D + KTK ++ + LD Sbjct: 84 GPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDG 143 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + +++ D N + AARN+ +++LPV G+NVYDILR +LV+ +A+ Sbjct: 144 TEKVLL--VTDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAAL 192 >gi|167036802|ref|YP_001664380.1| 50S ribosomal protein L4 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039521|ref|YP_001662506.1| 50S ribosomal protein L4 [Thermoanaerobacter sp. X514] gi|256752633|ref|ZP_05493485.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1] gi|300915228|ref|ZP_07132543.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561] gi|307267013|ref|ZP_07548529.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1] gi|307725152|ref|YP_003904903.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter sp. X513] gi|320115224|ref|YP_004185383.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390660|ref|ZP_08212215.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200] gi|226731436|sp|B0KCK1|RL4_THEP3 RecName: Full=50S ribosomal protein L4 gi|226731437|sp|B0K5P4|RL4_THEPX RecName: Full=50S ribosomal protein L4 gi|166853761|gb|ABY92170.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X514] gi|166855636|gb|ABY94044.1| ribosomal protein L4/L1e [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748453|gb|EEU61505.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1] gi|300888952|gb|EFK84099.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561] gi|306917998|gb|EFN48256.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1] gi|307582213|gb|ADN55612.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X513] gi|319928315|gb|ADV79000.1| ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993338|gb|EGD51775.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200] Length = 206 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ GE G I + + +F + ++ + +R G +K R EV Sbjct: 1 MPKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D + KTK +V + ++ +ALI+ + ++N +L+ARNIP + L Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFNVDSALIVV-PEGEKNVELSARNIPGVKTLYANY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YDIL+ K +++K A+ +E+ + Sbjct: 180 LNTYDILKYDKFIITKDAVGIVEEVY 205 >gi|297588192|ref|ZP_06946836.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC 53516] gi|297574881|gb|EFH93601.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC 53516] Length = 207 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 114/207 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N GE+ G + ++E IF + + ++ V+R Q KR G +K RSEV Sbjct: 1 MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVRNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P +A+PKKVR LA++ L+DK Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTDKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L TK V + + ++ + D + RNI N+ + + Sbjct: 121 NEMIVLDKLSLDAISTKKAVEVLKNIKADKKALVVVDKNDDTLYRSFRNIENVAICEARL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD L+ + LV++ A++ LE+ F+ Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207 >gi|58584598|ref|YP_198171.1| 50S ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497927|sp|Q5GSU5|RL4_WOLTR RecName: Full=50S ribosomal protein L4 gi|58418914|gb|AAW70929.1| Ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 204 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + NL D G ++ IF+++ + IL ++RWQ ++R G K KG S+V+ T Sbjct: 1 MECKLVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGP+ ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYSQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++NL KT + + S+ LI+ + + AARN+ +NL+ G+ Sbjct: 121 QVIILNNLNINVKKTSEMCKYIQNFKFSSFLIVG--DYEDSLLRAARNLHYVNLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DIL ++L+ A+ LE R Sbjct: 179 NVFDILNHECIMLTSDALRYLEGRL 203 >gi|116490659|ref|YP_810203.1| 50S ribosomal protein L4P [Oenococcus oeni PSU-1] gi|290890075|ref|ZP_06553158.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429] gi|122277157|sp|Q04G84|RL4_OENOB RecName: Full=50S ribosomal protein L4 gi|116091384|gb|ABJ56538.1| LSU ribosomal protein L4P [Oenococcus oeni PSU-1] gi|290480266|gb|EFD88907.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429] Length = 207 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G + +++ IFA++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVALYKQDGTQAGEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+RGG + GP+P + + +K LAL+ LSDK + Sbjct: 61 GRKPWRQKGTGNARQGSIRAPQWRGGAISMGPIPRPYAYKINRKAYRLALKSVLSDKVSA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++ID L ++ TK + L+ + ++ + N +L+ARN+PN+ + G Sbjct: 121 KNFVIIDELNFEKPSTKAIADSLNKLEATKKTLLVVDDANENAKLSARNLPNVQVTTASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+++ K+V+ +SA++ +E+ Sbjct: 181 VNVYDLVKAQKVVIVQSAVKQVEE 204 >gi|312870511|ref|ZP_07730630.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3] gi|311093973|gb|EFQ52298.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3] Length = 207 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ +F ++P Q + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L+++ +I D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALIVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ ++ K++++KSA+ +E+ Sbjct: 181 VNILNVADAQKVIITKSALSQVEE 204 >gi|331702079|ref|YP_004399038.1| 50S ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929] gi|329129422|gb|AEB73975.1| ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929] Length = 207 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +++++ IF ++P ++ + Q R G K RS V Sbjct: 1 MTDVALYKQDGSKNGTVALNDGIFGIEPNNNVVFDAIVMQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYRLPKKVSRLALKSVLSEKVSD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK LD+S ++ + L+ARN+ N+ ++ QG Sbjct: 121 NKLVVVDTLQFDAPKTKEFAELLGKLDVSTKTLVVLEDDNEKAVLSARNLENVKVVSAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEE 204 >gi|166031658|ref|ZP_02234487.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC 27755] gi|166028635|gb|EDR47392.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC 27755] Length = 206 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 119/208 (57%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ I +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVETIELSDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D+L E KTK + + L++S AL++ DG + N +L+A+NI + Sbjct: 121 NKFIVVDSLTFDEIKTKNVANALKNLNVSKALVVLEDG---NVNAELSAKNIAGVKTAKT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ + ++ +K+A++A+E+ + Sbjct: 178 NTINVYDVMKYNTVIATKAAVKAIEEVY 205 >gi|167759861|ref|ZP_02431988.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704] gi|167662480|gb|EDS06610.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704] Length = 206 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +S+ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTMDLSDAVFGVEINEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTAKVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 +V+D + E KTK + LD+S AL++ DG + N +++ARNI +I Sbjct: 121 KKFIVVDEIKLDEIKTKNFANILKNLDVSKALVVLEDG---NTNAEVSARNIADIKTARS 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVANIEEVY 205 >gi|291542036|emb|CBL15146.1| LSU ribosomal protein L4P [Ruminococcus bromii L2-63] Length = 207 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V +++G++ G I ++E +F ++P ++ +++ +R G + RSEV+ Sbjct: 1 MPNLAVVDMEGKNVGTIELAESVFGIEPNAAVMHQMVVNYLAAQRQGTQSALTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++ KKVR LA++ A S K Sbjct: 61 GKKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYRFSVNKKVRRLAMKSAFSSKVME 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D++ E KTK +V A+ +I ++D +A NIP + V Sbjct: 121 NELIVVDSISMDEYKTKKIVAMLSAIGAEKKALIVLPEVDSKVIKSANNIPGVKTAQVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL++ K A+ +E+ + Sbjct: 181 LNVYDILNADKLIIVKDAVSKIEEVY 206 >gi|270291132|ref|ZP_06197355.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4] gi|304385413|ref|ZP_07367758.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici DSM 20284] gi|270280528|gb|EFA26363.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4] gi|304328620|gb|EFL95841.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici DSM 20284] Length = 207 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +S+ DG G + ++ DIF ++P ++ + Q R G K RS V Sbjct: 1 MANVSLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++PKK+R LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK L++ ++ + + + LAARN+ N+ ++ G Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEEDNESAVLAARNLSNVKIVEPTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV DI+ KLV+++ A+ +E+ Sbjct: 181 INVLDIMNSDKLVITQKALSQVEE 204 >gi|57239335|ref|YP_180471.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|58579301|ref|YP_197513.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|81557285|sp|Q5HAS3|RL4_EHRRW RecName: Full=50S ribosomal protein L4 gi|57161414|emb|CAH58338.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|58417927|emb|CAI27131.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N++ ++ G I ++ IF++ + IL V+ WQ ++RIG K+K +V+ T Sbjct: 1 MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LII G ++ + +N+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFEHQSFLII-GKDYNKGMMYSCKNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DILR ++L+ ++ LEDR Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204 >gi|210611126|ref|ZP_03288740.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787] gi|210152113|gb|EEA83120.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787] Length = 206 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTTRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D + E KTK L++S AL++ DG + N L+ARNI N+ Sbjct: 121 NKFIVLDEMNFGEIKTKNFQNMLNNLEVSKALVVLEDG---NTNAALSARNIANVKTAWT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++++K+ + +E+ + Sbjct: 178 NTINVYDILKYNTVIVTKAVVATIEEVY 205 >gi|260438215|ref|ZP_05792031.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM 2876] gi|292809407|gb|EFF68612.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM 2876] Length = 206 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G+ G + +++ +F ++ ++ + + Q KR G +K RSEV+ Sbjct: 1 MAKVSVYNIEGKVVGDMELNDAVFGVEVNTHLVHQAVVLQLANKRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK ++LAL+ L+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGIVFAPKPRDYSFKMNKKEKNLALKSVLTTKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK +V + L++ AL++ ++N L++RNIP + Sbjct: 121 NKFIVVDGLSFDEIKTKNMVNVLKNLEVKKALVVTDDD-NKNVTLSSRNIPGVKTAFTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K+V++K I +E+ + Sbjct: 180 INVYDILKYDKMVVAKDVISKIEEVY 205 >gi|289550144|ref|YP_003471048.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis HKU09-01] gi|289179676|gb|ADC86921.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 104/204 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ + KTK L+ +++ D N L+ARNIP + + G Sbjct: 121 NGFTVVDSFGFETPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDISSADSVIITEAAAKKVEE 204 >gi|320335522|ref|YP_004172233.1| 50S ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211] gi|319756811|gb|ADV68568.1| ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211] Length = 201 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 101/175 (57%), Gaps = 5/175 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+ WQ ++R G + +K R++V+ G KMY QKGTG ARH +SV F GGG AFG Sbjct: 26 VLHEVVSWQLAKRRQGSASTKTRAQVSRGGKKMYSQKGTGNARHGDRSVPTFVGGGVAFG 85 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV--TRFRALDLS 149 P P + LPKKVR L L AL+D+ + ++ +D + KTK V + +D S Sbjct: 86 PKPRSYAYTLPKKVRQLGLAMALADRQAQDKLLAVDGF-GLDGKTKSFVAWAKENGMDGS 144 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + + D + AARN+ + LPV G+NVYDILR +L++ A+E ++ Sbjct: 145 ERVFL--VTDDEATRRAARNLSWVTALPVAGLNVYDILRHERLIIDAIALEPAKE 197 >gi|197303813|ref|ZP_03168849.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC 29176] gi|197297106|gb|EDY31670.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC 29176] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D + E KTK T L+++ AL++ +G D+N +++A+NIP++ V Sbjct: 121 NKFIVVDEMKFDEIKTKKFQTVLNNLNVNKALVVLEEG---DKNAEISAKNIPDVKTARV 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + A+E+ + Sbjct: 178 NTINVYDILKYNTVIATKAVVAAIEEVY 205 >gi|23097575|ref|NP_691041.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831] gi|46577267|sp|Q8ETY1|RL4_OCEIH RecName: Full=50S ribosomal protein L4 gi|22775798|dbj|BAC12076.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 108/200 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ +F ++P +L + Q R G K RSEV Sbjct: 1 MPKVALLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N+ KTK +V + L + +I + D +A N+ N+ +L V+ Sbjct: 121 ESLLVLENISIDAPKTKEIVNILKGLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEE 180 Query: 181 INVYDILRCSKLVLSKSAIE 200 +N+ D+L KL+++K A E Sbjct: 181 LNILDLLMHDKLIITKDAAE 200 >gi|162446958|ref|YP_001620090.1| 50S ribosomal protein L4 [Acholeplasma laidlawii PG-8A] gi|189029489|sp|A9NED4|RL4_ACHLI RecName: Full=50S ribosomal protein L4 gi|161985065|gb|ABX80714.1| large subunit ribosomal protein L4 [Acholeplasma laidlawii PG-8A] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 117/204 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ N GE +++++ IF + P Q +L V+ Q R G +K+K R+EV Sbjct: 1 MPTLNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP+P + +KV+ LAL+ ALS + Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++DN+ E KTK + L L + I+ +D+N LA+ N+P + V Sbjct: 121 ENLVLVDNITVAEPKTKLFIEIMNNLKLDDRSIVLVDSVDKNLLLASNNLPGAVVREVSQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++VY++L+ ++VL++ A++ E+ Sbjct: 181 VSVYELLKFKQVVLTQGAVKYYEE 204 >gi|328951235|ref|YP_004368570.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884] gi|328451559|gb|AEB12460.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 12/207 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + G+ + +++ E+I P +L V+RWQ ++R G + +K R EVAY+ Sbjct: 1 MYTLPVISKSGKKEVQVNLPEEI---NPH--VLYEVVRWQLAKRRRGTASTKTRGEVAYS 55 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QK TGRARH + F GGG FGP P + LPKKVR L L A++D+ Sbjct: 56 SRKLYPQKHTGRARHGDRGAPIFVGGGTVFGPKPRDYSYTLPKKVRKLGLAMAIADRAKE 115 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNA-LIIDGCQLDRNFQLAARNIPNINLLP 177 ++V++ KTK + +A LD S L++ +L R AARN+P ++L Sbjct: 116 EKLLVVEAFEGVNGKTKEFLAWAKANGLDGSETVLVVTENELVRR---AARNLPWASVLE 172 Query: 178 VQGINVYDILRCSKLVLSKSAIE-ALE 203 +G+NVYDILR +L+L ++A++ ALE Sbjct: 173 PEGLNVYDILRHERLLLDEAALKLALE 199 >gi|150020846|ref|YP_001306200.1| 50S ribosomal protein L4 [Thermosipho melanesiensis BI429] gi|166199920|sp|A6LLL4|RL4_THEM4 RecName: Full=50S ribosomal protein L4 gi|149793367|gb|ABR30815.1| ribosomal protein L4/L1e [Thermosipho melanesiensis BI429] Length = 221 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 123/218 (56%), Gaps = 14/218 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + + E++FA++P Q ++ R + Q R G + +K R EV+ Sbjct: 1 MAKVDLFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS + Sbjct: 61 GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLD-RNFQLAARNIPNINLL 176 N+++V+D++ ++ +TK L + L L N +++ + + N +++ RNIP + +L Sbjct: 121 NNLVVVDDIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVL 180 Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALED 204 + G+NVYDIL KLVL + ++ +E+ Sbjct: 181 IADNPGVDRVNIDGLNVYDILNHDKLVLLQGTVQKIEE 218 >gi|154505168|ref|ZP_02041906.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149] gi|153794647|gb|EDN77067.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSMKLNKKEKRAALKSALSSRVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +VID + E KTK +L+++ AL++ DG + N +L+ARNI ++ Sbjct: 121 NKFIVIDEMNFGEIKTKNFQNMLNSLNVNKALVVLEDG---NVNAELSARNIADVKTART 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + ++ +K+A+ +E+ + Sbjct: 178 NTINVFDILKYNTVIATKAAVANIEEVY 205 >gi|315659226|ref|ZP_07912090.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis M23590] gi|315495651|gb|EFU83982.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis M23590] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 104/204 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ + KTK L+ +++ D N L+ARNIP + + G Sbjct: 121 NGFTVVDSFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDISSADSVIITEAAAKKVEE 204 >gi|153854971|ref|ZP_01996184.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814] gi|149752468|gb|EDM62399.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGKIDLSDAVFGVEVNEHLVHMAVVSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + K+ + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKREKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +VID + +E KTK + LD+S AL++ ++N +L+ARNI ++ Sbjct: 121 NKFIVIDEINFEEAKTKNFANILKNLDVSKALVVLEDD-NKNAELSARNIADVKTAKTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + +E+ + Sbjct: 180 INVYDILKYNTVITTKAVVAKIEEVY 205 >gi|160941068|ref|ZP_02088406.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC BAA-613] gi|158436017|gb|EDP13784.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC BAA-613] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGALELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + ALR AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALRSALTSRVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ D+N L+ARNI + V Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVMDNLKVSKALVVLADN-DQNTVLSARNIAGVKTSQVGS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205 >gi|156743947|ref|YP_001434076.1| 50S ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941] gi|156235275|gb|ABU60058.1| ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941] Length = 221 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 111/199 (55%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N GE+ GVI +S+ +F ++P ++ + + Q R+G + GR EV + Sbjct: 1 MEAKLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P +P+K+R LA+R ALS + Sbjct: 61 RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRSYTKDMPRKMRRLAVRSALSARHRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+ +D L ++ +TK ++ AL+L+ +I + D + + +A N+PN+ L + Sbjct: 121 AILFLDRLTFEQPRTKDMIAVLNALNLTGKTLIVLDRKDEHVRRSANNLPNVKTLLAHYL 180 Query: 182 NVYDILRCSKLVLSKSAIE 200 NV D+L +V+ K+A++ Sbjct: 181 NVIDLLTHDHVVMLKAAVD 199 >gi|325179760|emb|CCA14163.1| 50S ribosomal protein L4 putative [Albugo laibachii Nc14] Length = 279 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 106/192 (55%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 +++ +F + ++ IL RV+RWQ +R G K+K RSE + K+ QKG+G+AR Sbjct: 85 NTLALDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQAR 144 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 Q+RGG GPV + L KKVR+ +R ALS K + +++NL Sbjct: 145 VGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVALSQKLREGKLAIVENLDWDVV 204 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L A NAL IDG ++ NF L++RNIP I+++P INVY IL+ L+ Sbjct: 205 KTKELRDTLIARKWDNALFIDGEEVTTNFILSSRNIPCIDVIPQHKINVYSILKRDLLIT 264 Query: 195 SKSAIEALEDRF 206 + AI EDRF Sbjct: 265 TVDAITYFEDRF 276 >gi|323483300|ref|ZP_08088690.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum WAL-14163] gi|323691202|ref|ZP_08105478.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum WAL-14673] gi|323403398|gb|EGA95706.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum WAL-14163] gi|323504721|gb|EGB20507.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum WAL-14673] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTLELNDSVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D + E KTK + L ++ AL++ D C N L+ARNIP + V Sbjct: 121 NKFIVVDAMNFDEIKTKKFQSVMNNLKVNKALVVLDDTCG---NTVLSARNIPTVKTASV 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 178 NTINVYDILKYNTVVATKAAVASIEEVY 205 >gi|228470744|ref|ZP_04055595.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3] gi|228307601|gb|EEK16597.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3] Length = 207 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N IMV+D L + KTK V+ ++ AL +DG Q++ L+ARNIP + Sbjct: 121 NQIMVLDQLSFEAPKTKSFVS------MAKALNVDGQKTLYVVSQIEDTVALSARNIPGV 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +++ Q +N Y +L C K+V ++ A+ + + F Sbjct: 175 SIIRAQDLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|323141357|ref|ZP_08076248.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067] gi|322414106|gb|EFY04934.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067] Length = 211 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LSV +L G G I +++ +F + + ++ + + Q +R G S +K R+ V Sbjct: 4 MPKLSVYDLSGAQTGEIELNDSVFGAEFNEAVVHQAVVMQLANQRQGTSATKTRAMVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL ALS K + Sbjct: 64 GRKPWKQKGTGRARCGSNRSPVWVGGGTTFGPQPRSYAKKMPRKARRLALCCALSAKVAA 123 Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++V++ L KTK L+ F A+D LI DG + N L+ARN+P + + Sbjct: 124 GELVVVEGLAFDAPKTKQVASLLKAFEAVDTKALLITDGS--NENVALSARNMPKVTTIT 181 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 G+N +DIL K+ L+K A+E +E+ Sbjct: 182 NMGLNCFDILNSKKVFLAKDAVEKIEE 208 >gi|88606786|ref|YP_504893.1| 50S ribosomal protein L4 [Anaplasma phagocytophilum HZ] gi|109893574|sp|Q2GL58|RL4_ANAPZ RecName: Full=50S ribosomal protein L4 gi|88597849|gb|ABD43319.1| ribosomal protein L4 [Anaplasma phagocytophilum HZ] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++ N+ E G I ++ +F L+P++ +L V+ WQ ++R G K+KG S+++ T Sbjct: 1 MEVNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPVP ++L KKVR L L+ ALS K +N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAAN 120 Query: 122 DIMVIDNL---VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D+L + K K + F A S ++ + C+ A RN+ ++LL Sbjct: 121 KLVVLDSLDVDLKKTADAKGVFGNF-AGHSSYLVVSESCK--EEVVRACRNLRGVDLLKC 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINV DIL+ ++L+ +++LE R Sbjct: 178 VGINVLDILKHDCVILTVDTVKSLEGRL 205 >gi|239623348|ref|ZP_04666379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522314|gb|EEQ62180.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + AL+ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK +L ++ AL++ D+N L+ARN+ ++ V Sbjct: 121 NKFIVVDELKFDEIKTKKFQGVMDSLKVNKALVVLADN-DQNTVLSARNVADVKTAQVDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205 >gi|303240970|ref|ZP_07327481.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2] gi|302591556|gb|EFL61293.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2] Length = 207 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + +++G+ G I +SE +F + + ++ + + Q KR G +K +SEV Sbjct: 1 MPKVDLYDMNGKVVGDIDLSEAVFGIDVNKEVVHQAVVNQLANKRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + LPKKV+ LAL+ LS K Sbjct: 61 GIKPWKQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTLPKKVKRLALKSVLSSKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L + KTK + + L + +I + N + +A NIP + L Sbjct: 121 NEIIVLDKLNFDKIKTKQMAEVLKNLKIDGTAVILIADKNENVERSANNIPGVKTLLANT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDI++ SKL+++K A+ +E+ + Sbjct: 181 INVYDIVKHSKLIITKDAVSKVEEVY 206 >gi|289579144|ref|YP_003477771.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9] gi|297545328|ref|YP_003677630.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528857|gb|ADD03209.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9] gi|296843103|gb|ADH61619.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ GE G I + + +F + ++ + + +R G +K R EV Sbjct: 1 MAKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHQAVLNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D + KTK +V + ++ +ALI+ + ++N +L+ RNIP + L Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFNVDSALIVV-PEGEKNVELSTRNIPGVKTLYANY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ K +++K A+ +E+ + Sbjct: 180 LNTYDVLKYDKFIITKDAVGIVEEVY 205 >gi|220903935|ref|YP_002479247.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254803730|sp|B8IYH3|RL4_DESDA RecName: Full=50S ribosomal protein L4 gi|219868234|gb|ACL48569.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 210 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ D+F ++ + IL V R Q KR G K R+ V+ Sbjct: 1 MATVKVYDQNKQESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KVRSLAL+ ALS + + Sbjct: 61 GAKPWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ +V E KTK+ L L+ ALI+ + + + +ARNIP + L V Sbjct: 121 ESLMVVKGIVLPEAKTKHFAKVADTLGLTKALIV-APEENADLTRSARNIPGLTLTTVDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +IL+ +LVL + A+E+++ RF+ Sbjct: 180 LSVLEILKHKQLVLLEGAVESVQARFE 206 >gi|332176632|gb|AEE12322.1| ribosomal protein L4/L1e [Porphyromonas asaccharolytica DSM 20707] Length = 207 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N IMV+D L + KTK V+ ++ AL +DG Q++ L+ARNIP + Sbjct: 121 NQIMVLDQLSFEAPKTKSFVS------MAKALNVDGQKTLYVVSQIEDTVALSARNIPGV 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +++ Q +N Y +L C K+V ++ A+ + + F Sbjct: 175 SIVRAQDLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|331091666|ref|ZP_08340500.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403423|gb|EGG82982.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G I +++ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK L++S AL++ +RN +L+ARNI + Sbjct: 121 NKFIVLDEINFGEIKTKNFQNVLNNLNVSKALVVLEDD-NRNAELSARNIAAVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+ +E +E+ + Sbjct: 180 INVYDILKYNTVVTTKAVVEKIEEVY 205 >gi|225630300|ref|YP_002727091.1| ribosomal protein L4 [Wolbachia sp. wRi] gi|254803765|sp|C0R308|RL4_WOLWR RecName: Full=50S ribosomal protein L4 gi|225592281|gb|ACN95300.1| ribosomal protein L4 [Wolbachia sp. wRi] Length = 204 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ ++R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++++DNL KT + + S+ LI+ G L R AA+N+ ++L+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDDLLR----AAKNLHYVDLIKPI 176 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+DIL ++L+K ++ LE R Sbjct: 177 GLNVFDILNHECVMLTKDTLKHLEGRL 203 >gi|258646052|ref|ZP_05733521.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM 15470] gi|260403422|gb|EEW96969.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM 15470] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNTAGAAAGEIELNDSVFGVEYNEAVIHQAVVRQMANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + +K R LA++ ALS+K + Sbjct: 61 GRKPWKQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKDMTRKARQLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK +V A ++ ALI+DG N L+ARNIP + Sbjct: 121 NELIVVDAINFDTPKTKEVVKFLAAFNVDGKALIVDGGTASENTVLSARNIPGVKAYAPS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N+YDI+ +KL L++ A++ +E+ Sbjct: 181 GLNIYDIVHYTKLFLTQDAVKKIEE 205 >gi|218294755|ref|ZP_03495609.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23] gi|218244663|gb|EED11187.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23] Length = 213 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 97/175 (55%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ +R G + +K R EVAY+G K+Y QK TGRARH F GGG FG Sbjct: 35 LLWEVVRWQLASRRRGTASTKTRGEVAYSGRKIYPQKHTGRARHGDIGAPIFVGGGTVFG 94 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ + + KT+ + + + L + Sbjct: 95 PKPRDYSYTLPKKVRKAGLAMAVADRAKEGKLLLVEAFLGVQGKTREFLAWAKEVGLDGS 154 Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + D + AARN+P + L +G+NVYDILR +LV+ A E ++R Sbjct: 155 ETVLLVTADEAVRRAARNLPWVVTLAPEGLNVYDILRTGRLVMDLKAWEVFQERL 209 >gi|261264933|gb|ACX55825.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 208 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG RAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++D + KTK L+ +++ D N +L+ARNIP + + Q Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+NV D+ ++++++A + +E+ Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEE 205 >gi|217967370|ref|YP_002352876.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724] gi|217336469|gb|ACK42262.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724] Length = 209 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V N E G I + E++F ++ + + + R G +K RSEV + Sbjct: 1 MIQVPVYNQKAEKVGEIELKEELFGVERRPDLFYTCVVMHLANGRQGTHSTKRRSEVNRS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR + + + GGG+ FGP P + +PKK+R LA+R ALS K Sbjct: 61 GRKVWPQKGTGHARQGDRKATHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-DRNFQLAARNIPNINLLPVQ 179 N+++++D + + KTK LV L+++ ++ G D N + AA N+ + + Sbjct: 121 NNLIILDKIELPQPKTKELVNILNNFGLADSKVLIGVPTKDENLKKAAMNLERVKTMIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ L+L+ AI LE+ F Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207 >gi|42520529|ref|NP_966444.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Drosophila melanogaster] gi|46577161|sp|P61071|RL4_WOLPM RecName: Full=50S ribosomal protein L4 gi|42410268|gb|AAS14378.1| ribosomal protein L4 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 204 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ ++R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++++DNL KT + + S+ LI+ G L R AA+N+ ++L+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDDLLR----AAKNLHYVDLIKPI 176 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+DIL ++L+K ++ LE R Sbjct: 177 GLNVFDILNHECVMLTKDTLKHLEGRL 203 >gi|291296990|ref|YP_003508388.1| 50S ribosomal protein L4/L1e [Meiothermus ruber DSM 1279] gi|290471949|gb|ADD29368.1| ribosomal protein L4/L1e [Meiothermus ruber DSM 1279] Length = 206 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 1/175 (0%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ +R G + +K R V +T KMY QK TGRARH F GGG FG Sbjct: 25 VLYEVVRWQLASRRRGTAATKTRGMVNFTTKKMYAQKHTGRARHGDYGAPIFVGGGTVFG 84 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L L AL+D+ ++++ KTK V +A +L Sbjct: 85 PQPRDYSYTLPKKVRKLGLAMALADRAKEGKFFLVEDFKGVNGKTKEFVAWLKAHNLEGP 144 Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+ D AARN+P + +L +G+NVYDI+R LV+ SA E ++ + Sbjct: 145 SILL-VTSDEKVARAARNLPKVRVLAPEGLNVYDIMRQEALVMEASAWEGVQAKL 198 >gi|89893218|ref|YP_516705.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51] gi|122483925|sp|Q250N1|RL4_DESHY RecName: Full=50S ribosomal protein L4 gi|89332666|dbj|BAE82261.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51] Length = 207 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 112/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G + + E +F ++P ++ + + Q +R G + R EV Sbjct: 1 MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L E KT+ +V +AL++S +I + + +ARNI I V+G Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFMETIERSARNIAGIKTTAVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+YD+L +V++K+A+ E+ Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEE 204 >gi|326792606|ref|YP_004310427.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427] gi|326543370|gb|ADZ85229.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427] Length = 207 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 117/209 (55%), Gaps = 6/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G G + +++ IFA++ ++ ++ + + +R G +K R+EV Sbjct: 1 MAKVAVLNMTGAQVGEVELNDSIFAVEVKEHLVHQAVVAHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP---IIGVHALPKKVRSLALRHALSDK 117 G K + QKGTGRAR S Q+ GGG AF P P I V+A K R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGRARQGSIRAVQWVGGGVAFAPKPRNYSIKVNA---KERRLALKSALTSR 117 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +V+D+L E KTK + AL L+ ALI+ + +N L+A+NI I Sbjct: 118 VNESKFIVLDSLELAEIKTKAMANVLEALKLNKALIVTEGEASKNVMLSAKNIQGIKTAA 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V INVYDIL+ V++K A+ +E+ + Sbjct: 178 VNNINVYDILKYDTFVVTKDALNKIEEVY 206 >gi|242278659|ref|YP_002990788.1| 50S ribosomal protein L4 [Desulfovibrio salexigens DSM 2638] gi|259491552|sp|C6C186|RL4_DESAD RecName: Full=50S ribosomal protein L4 gi|242121553|gb|ACS79249.1| ribosomal protein L4/L1e [Desulfovibrio salexigens DSM 2638] Length = 206 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + ++ G + ++ ++F + + IL V+R Q KR G +K R Sbjct: 1 MATITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGGG FGP P + KKVR LAL+ AL+ + Sbjct: 61 GAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ N+ E KTK V AL L AL++ D L+ARNIP I L+ Sbjct: 121 EKMMVVKNIDLPEIKTKLFVEVAEALGLEKALVVV-KDADNKLLLSARNIPGIKLITADQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYDIL+ +LV+ ++A + L++R K Sbjct: 180 LNVYDILKARQLVMLENAAQDLQERLK 206 >gi|189424411|ref|YP_001951588.1| 50S ribosomal protein L4 [Geobacter lovleyi SZ] gi|226730669|sp|B3E7T6|RL4_GEOLS RecName: Full=50S ribosomal protein L4 gi|189420670|gb|ACD95068.1| ribosomal protein L4/L1e [Geobacter lovleyi SZ] Length = 206 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N++ E G +++ E IFA + ++ ++ + L+ Q +R G K+K R+EV+ Sbjct: 1 MPTIALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR Q+ GGG FGP P + KK R ALR LS + S Sbjct: 61 GKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + + TK + DL +LII + N L++RN+P + LL G Sbjct: 121 EKITVLDQIEFAKISTKDFAGFMKKFDLERSLIIT-EEPSTNLALSSRNVPYVKLLKADG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NV+D+L+ +V+++ A+ +E Sbjct: 180 LNVFDVLKYQNIVMTEGAVRLVE 202 >gi|255530515|ref|YP_003090887.1| 50S ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366] gi|255343499|gb|ACU02825.1| ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366] Length = 209 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++SLA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKSLARKSALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+++ KTK + AL+L+N L++ Q + N L++RNI + ++ Sbjct: 121 NNVVVLEDFTFDTIKTKNYINLVSALNLTNEKTLLVLPTQ-NNNIYLSSRNIQKVKVITA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L C KL+L+ +++ LE+ F Sbjct: 180 DQLNTYDVLNCGKLLLTADSVKTLEEAF 207 >gi|219849886|ref|YP_002464319.1| 50S ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485] gi|219544145|gb|ACL25883.1| ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485] Length = 222 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ N GE G I VS+ IF ++P ++ + + Q+ R+G ++GR EV + Sbjct: 1 MQATLYNQAGEQVGSIEVSDYIFGIEPNVPVMHQYVVMQNANARLGTHNTRGRGEVKGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P ++P+K+R L +R ALS KF +N Sbjct: 61 RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRVSMPRKMRRLGVRSALSVKFAAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDG-CQLDRNFQLAARNIPNINLLP 177 I ID L + +TK V +A L++ ++ID + N + +A N+P + L Sbjct: 121 QIRFIDELTFPQPRTKDFVAFLQAHGLADKKTLVVIDSKSPANENLRRSANNLPKVKTLL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L +++ K+A++ +E Sbjct: 181 AHYLNVRDLLVYDHIIMPKAAVQVVE 206 >gi|320165535|gb|EFW42434.1| ribosomal protein L4/L1e [Capsaspora owczarzaki ATCC 30864] Length = 542 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 1/192 (0%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 + ++S+S+ +F P+ ++ R + W +R G + +K ++EV G K QK TGR Sbjct: 234 QRTLMSLSDYVFGAAPRTDLIHRYVLWHLACQRAGTASTKTKAEVRGGGRKPRPQKHTGR 293 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR S RGGG AFGP P + LPK VR ALR ALS K+ D+ ++D+L Sbjct: 294 ARLGSIRSPMMRGGGVAFGPKPKSFAYVLPKTVRRFALRAALSIKYAQGDLQIVDSLSPI 353 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 K KY+ R+ +L+NAL++D + N A + + + V ++VYDI++ SKL Sbjct: 354 VHKAKYVGHILRSNNLTNALLVDE-KASPNLIRGASTMQTVKAVSVDALSVYDIMKYSKL 412 Query: 193 VLSKSAIEALED 204 VL+ A+ ALED Sbjct: 413 VLTTKAVAALED 424 >gi|163791667|ref|ZP_02186062.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7] gi|159873046|gb|EDP67155.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7] Length = 207 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K S Sbjct: 61 GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVIS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNF-QLAARNIPNINLLPV 178 D++V+D L KTK + L++ S A I+ + D +F L+ARN+P + ++ Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIV--VENDNDFATLSARNLPGVKVVAF 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + V D++ KL+L+++A+ LE+ Sbjct: 179 DNVTVLDVVAHEKLILTQTALTKLEE 204 >gi|58617355|ref|YP_196554.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel] gi|75432695|sp|Q5FFU1|RL4_EHRRG RecName: Full=50S ribosomal protein L4 gi|58416967|emb|CAI28080.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel] Length = 205 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 119/205 (58%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N++ ++ G I ++ IF++ + IL V+ WQ ++R+G K+K +V+ T Sbjct: 1 MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LII G ++ + +N+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFEHQSFLII-GKDYNKGMMYSCKNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DILR ++L+ ++ LEDR Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204 >gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745] gi|122265374|sp|Q03EB7|RL4_PEDPA RecName: Full=50S ribosomal protein L4 gi|116103312|gb|ABJ68455.1| LSU ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745] Length = 207 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +S+ DG G + ++ DIF ++P ++ + Q R G K RS V Sbjct: 1 MANVSLFKQDGTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++PKK+R LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK L++ ++ + + + LAARN+ N+ ++ +G Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLGNLNVDKKALLVLEEDNESAVLAARNLSNVKIVEPEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV DI+ KLV+++ A+ +E+ Sbjct: 181 INVLDIMNSDKLVITQKALSQVEE 204 >gi|331004122|ref|ZP_08327602.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411532|gb|EGG90942.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str. F0167] Length = 206 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + +AL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D+ E KTK + L++ AL++ + ++N L+ RNI + + Sbjct: 121 NKFIVVDDFAMSEIKTKKMQQTLNNLNVKKALVV-CAENEKNTVLSVRNIYGVKAASPKT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V SK A++ +E+ + Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205 >gi|291166878|gb|EFE28924.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896] Length = 207 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++GE + +SE++F + + ++ +V++ KR+G +K R+EV Sbjct: 1 MPTVDVLNINGEKVSEMELSENLFGAEINEHVVYQVVKNHLANKRVGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S Q++GGG F P P + +PKK+R LAL+ L+DK Sbjct: 61 GAKPWRQKGTGRARQGSIRSPQWKGGGVVFAPKPRDYSYTVPKKIRRLALKSVLTDKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D++ E KT+ AL + ++ + RNI N+ + V Sbjct: 121 GNLVVVDDINLTEWKTREFAKMLSALKVGKKALVVTKDNSPEVVRSGRNIKNVKIAFVGT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL + LVL+K A+ E+ + Sbjct: 181 MNVYDILNANTLVLTKDAVAKAEEVY 206 >gi|313884448|ref|ZP_07818209.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8] gi|312620232|gb|EFR31660.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8] Length = 205 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ IF ++P Q ++ + Q +R G K RS V Sbjct: 1 MAKVTLFKQDGSNAGEIELNDAIFGIEPNQSVVVDAVIMQRASQRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKK+R LA+R ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKMRRLAIRSALSQKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V+D L + KTK LDL+ +++ + AARNIPN+ ++ Sbjct: 121 NEFVVVDQL--EATKTKEFKAILSNLDLNRKVLLVLEDNNEAVFRAARNIPNVKVIDQGN 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ K++++++A+ +E+ Sbjct: 179 VNVLDVVNYDKVLITQAALATVEE 202 >gi|73667227|ref|YP_303243.1| 50S ribosomal protein L4 [Ehrlichia canis str. Jake] gi|109893593|sp|Q3YRL0|RL4_EHRCJ RecName: Full=50S ribosomal protein L4 gi|72394368|gb|AAZ68645.1| LSU ribosomal protein L4P [Ehrlichia canis str. Jake] Length = 205 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+S+ N++ + G I ++ IF++ + IL V+ WQ ++R G K+K +++ T Sbjct: 1 MEVSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ R + + LIID ++N + RN+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIRNFEHKSFLIIDK-DYNKNVVCSCRNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ A++ LE+R Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204 >gi|160914558|ref|ZP_02076773.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991] gi|158433716|gb|EDP12005.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991] Length = 209 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + +G++ I++++ +F ++P Q + + Q R G +K R+EV+ Sbjct: 1 MPKMVVLSQNGKELKEITLADSVFGIEPNQQCIFDAIVMQRASVRQGTHDTKNRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRSYSYKLNKKVRRLALKSVLSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N + V+D E KTK ++ A + ++ + + F L+ RNIP + +L Sbjct: 121 NAMSVVDKFELAEPKTKAFNQIIADINAPKKTLFVVSENEDFENAF-LSMRNIPTMMMLT 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 GINVYDI+ +K+V +++A++ +E+ Sbjct: 180 ADGINVYDIVNANKIVFTEAAVKDVEE 206 >gi|190571547|ref|YP_001975905.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018949|ref|ZP_03334756.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226731443|sp|B3CN27|RL4_WOLPP RecName: Full=50S ribosomal protein L4 gi|190357819|emb|CAQ55275.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995058|gb|EEB55699.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 204 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + +L + G + ++ IF+ K + IL ++RWQ ++R+G K+KG S+V+ T Sbjct: 1 MECELVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D+L KT + + S+ LI+ G L R AA+N+ ++L+ Sbjct: 121 QVVVLDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYGDDLLR----AAKNLHYVDLIKPI 176 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+DIL ++L+K ++ LE R Sbjct: 177 GLNVFDILNHECVMLTKDTLKHLEGRL 203 >gi|281206127|gb|EFA80316.1| hypothetical protein PPL_07147 [Polysphondylium pallidum PN500] Length = 318 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 2/195 (1%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E+ G I + + IF++ + IL R++RWQ + G ++ ++ T K + QKGTG Sbjct: 120 ENVGEIQLLKSIFSVPLRVDILHRIVRWQRAKAMQGTHYAQNMGDIDRTNKKPFSQKGTG 179 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + Q +GG +AF P P +LPKKVR L L+ AL+ K N +++++NL Sbjct: 180 RARQGTNHAIQMKGGARAFPPKPRDHSFSLPKKVRRLGLKVALATKLAQNKLVIVENLEL 239 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + KTK L T +L++D ++ N LA NI I+LLP +G+NVY IL+ Sbjct: 240 ESHKTKDLDTLLPE-QWGRSLLVDK-EISSNLSLAGFNIKRIDLLPERGLNVYSILQKDT 297 Query: 192 LVLSKSAIEALEDRF 206 LVL++++++ ++ R Sbjct: 298 LVLTRASLDEIQKRL 312 >gi|220928208|ref|YP_002505117.1| 50S ribosomal protein L4 [Clostridium cellulolyticum H10] gi|254803726|sp|B8I7Y0|RL4_CLOCE RecName: Full=50S ribosomal protein L4 gi|219998536|gb|ACL75137.1| ribosomal protein L4/L1e [Clostridium cellulolyticum H10] Length = 207 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 4/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G I +S+++F + L V+ Q +R G +K +SEV Sbjct: 1 MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + LPKKV+ +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVKRIAMKSALTSKVSG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+I V+D L KTK +V L D S L+ID + N +ARNIP I V Sbjct: 121 NEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVIDSK--NENIVKSARNIPGIKTAYV 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K +++K A+E +E+ + Sbjct: 179 NTLNVFDILKYDKFIITKDAVEKVEEVY 206 >gi|78043328|ref|YP_361117.1| 50S ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901] gi|109893583|sp|Q3A9R7|RL4_CARHZ RecName: Full=50S ribosomal protein L4 gi|77995443|gb|ABB14342.1| ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901] Length = 206 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G G I + ++IF + +L V +R G +K R EV+ Sbjct: 1 MPKVPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P +++PKKVR AL+ ALSDK Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L KTK ++ L ++ +I D + +ARNIP ++++ Sbjct: 121 NNLIVVDSLTFAAPKTKEMIRVLNNLKVNGKTLIVTAGYDEIVEKSARNIPGVSVMTAPS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N +L KL++++ A+ +E+ F Sbjct: 181 LNALSLLNHDKLIMTRDAVLKVEEVF 206 >gi|296449798|ref|ZP_06891567.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP08] gi|296877862|ref|ZP_06901884.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP07] gi|296261396|gb|EFH08222.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP08] gi|296431162|gb|EFH16987.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP07] Length = 217 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 11 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 71 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 190 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216 >gi|255654163|ref|ZP_05399572.1| 50S ribosomal protein L4 [Clostridium difficile QCD-23m63] Length = 207 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206 >gi|110800870|ref|YP_697093.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124] gi|168211904|ref|ZP_02637529.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626] gi|168215177|ref|ZP_02640802.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969] gi|168216632|ref|ZP_02642257.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239] gi|169347046|ref|ZP_02865988.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495] gi|182626931|ref|ZP_02954664.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721] gi|123148513|sp|Q0TMP7|RL4_CLOP1 RecName: Full=50S ribosomal protein L4 gi|110675517|gb|ABG84504.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124] gi|169296729|gb|EDS78858.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495] gi|170710168|gb|EDT22350.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626] gi|170713383|gb|EDT25565.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969] gi|177907721|gb|EDT70336.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721] gi|182381262|gb|EDT78741.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239] Length = 204 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIEGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|293402502|ref|ZP_06646637.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304016|gb|EFE45270.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 209 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQAGKELHEITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N + V+D + KTK ++ A + ++ +G + F L+ RNIP++ +L Sbjct: 121 NAMSVVDKFELEAPKTKAFNEIIANLNAPRKTLFVVSEGEDFENAF-LSMRNIPSMMMLT 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 180 ADGLNVYDIVNANKIVFTEAAVKDVEE 206 >gi|317485821|ref|ZP_07944685.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia 3_1_6] gi|316922927|gb|EFV44149.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia 3_1_6] Length = 206 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + D ++G ++++ ++F + + IL V+R Q KR G +K R+ V+ Sbjct: 1 MAVVKVYDQDKTEQGELTLTPEVFEVAVRPEILHLVVRAQLAAKRAGTHSTKTRAMVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KK+R LALR ALS + Sbjct: 61 GVKPWRQKGTGRARAGSNRSPVWRGGAILFGPQPRKYDFKVNKKIRKLALRMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+ E KTK L LS ALII + RN L++RN+P I L Sbjct: 121 DNLLVVKGFDLPEAKTKVFAKIAGNLGLSKALII-APEESRNLVLSSRNLPGITLTTPDQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ +LVL + A+E +E R K Sbjct: 180 LSVYEILKHKQLVLLEGAVEPVETRLK 206 >gi|239636232|ref|ZP_04677236.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri L37603] gi|239598248|gb|EEQ80741.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri L37603] gi|330685172|gb|EGG96836.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU121] Length = 207 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYGYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGFTVVDAFGFDAPKTKEFKNVLTTLEQPKKVLVVVENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEE 204 >gi|254973732|ref|ZP_05270204.1| 50S ribosomal protein L4 [Clostridium difficile QCD-66c26] gi|255091121|ref|ZP_05320599.1| 50S ribosomal protein L4 [Clostridium difficile CIP 107932] gi|255099233|ref|ZP_05328210.1| 50S ribosomal protein L4 [Clostridium difficile QCD-63q42] gi|255305016|ref|ZP_05349188.1| 50S ribosomal protein L4 [Clostridium difficile ATCC 43255] gi|255312776|ref|ZP_05354359.1| 50S ribosomal protein L4 [Clostridium difficile QCD-76w55] gi|255515535|ref|ZP_05383211.1| 50S ribosomal protein L4 [Clostridium difficile QCD-97b34] gi|255648630|ref|ZP_05395532.1| 50S ribosomal protein L4 [Clostridium difficile QCD-37x79] gi|306518753|ref|ZP_07405100.1| 50S ribosomal protein L4 [Clostridium difficile QCD-32g58] gi|328887509|emb|CAJ66889.2| 50S ribosomal protein L4 [Clostridium difficile] Length = 207 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206 >gi|291549415|emb|CBL25677.1| LSU ribosomal protein L4P [Ruminococcus torques L2-14] Length = 206 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 118/208 (56%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D L E KTK L+++ AL++ DG ++N +++A+NIP++ Sbjct: 121 NKFIVVDELNFDEIKTKKFQAVLNNLNVNKALVVLEDG---NKNVEISAKNIPDVKTAHT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + A+E+ + Sbjct: 178 NTINVYDILKYNTVIATKAVVAAIEEVY 205 >gi|237736171|ref|ZP_04566652.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817] gi|229421724|gb|EEO36771.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817] Length = 210 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 114/208 (54%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQL-DRNFQLAARNIPNINLL 176 D++V+D + + KTK +V A++ +N ++ D ++ D N L+ RN+ N +L Sbjct: 121 GDVLVLDGTI-ETPKTKTIVALTNAINATNKQLFVVNDLAEMNDYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++++K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVIITKEALTTIEE 207 >gi|126697641|ref|YP_001086538.1| 50S ribosomal protein L4 [Clostridium difficile 630] gi|260681847|ref|YP_003213132.1| 50S ribosomal protein L4 [Clostridium difficile CD196] gi|260685445|ref|YP_003216578.1| 50S ribosomal protein L4 [Clostridium difficile R20291] gi|260208010|emb|CBA60188.1| 50S ribosomal protein L4 [Clostridium difficile CD196] gi|260211461|emb|CBE01581.1| 50S ribosomal protein L4 [Clostridium difficile R20291] Length = 217 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 11 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 71 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 190 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216 >gi|320451299|ref|YP_004203395.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01] gi|320151468|gb|ADW22846.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01] Length = 205 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+ K+Y QK TGRARH F GGG FG Sbjct: 27 LLWEVVRWQLAKRRRGTASTKTRGEVAYSSRKIYPQKHTGRARHGDIGAPIFVGGGTVFG 86 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ ++++++ KTK + + L + Sbjct: 87 PKPRDYSYTLPKKVRQAGLAMAVADRAKEGKLLLVEDFAGVNGKTKEFLAWAKGAGLDGS 146 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ +L R AARN+P + L +G+NVYDILR +LV+ +A EA + R Sbjct: 147 ESVLLVTASELVRR---AARNLPWVVTLAPEGLNVYDILRTERLVMDLAAWEAFQARM 201 >gi|328958727|ref|YP_004376113.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4] gi|328675051|gb|AEB31097.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4] Length = 207 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K S Sbjct: 61 GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVVS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNF-QLAARNIPNINLLPV 178 D++V+D L KTK + L++ S A I+ + D +F L+ARN+P + ++ Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIV--VENDNDFATLSARNLPGVKVVAF 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + V D++ KL+ +++A+ LE+ Sbjct: 179 DNVTVLDVVAHEKLIFTQTALTKLEE 204 >gi|291544461|emb|CBL17570.1| LSU ribosomal protein L4P [Ruminococcus sp. 18P13] Length = 207 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL-ARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++SV ++ G +S+ +F + P + ++ A V+ + + +R G + R+EV+ Sbjct: 1 MAKVSVFDMTGNQVSETELSDAVFGITPNEAVMHAMVVNYLA-NQRQGTQSTLTRTEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P +AL KKVR LA++ ALS K Sbjct: 60 GGRKPWRQKGTGHARQGSIRAPQWYHGGVALGPKPRDYRYALNKKVRRLAMKSALSSKVL 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+D L KTK +V +AL++ +I + D+ +A NIP + V Sbjct: 120 ENNIIVLDALTVDSYKTKTIVAMLKALNVEGKALIVTAEADKKVIKSAANIPGVKTAAVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++ K+A+ +E+ + Sbjct: 180 TLNVYDILNYDKFIVVKNAVGQIEEVY 206 >gi|225387236|ref|ZP_03757000.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme DSM 15981] gi|225046654|gb|EEG56900.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme DSM 15981] Length = 206 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGSMELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPVPRDYTITLNKKEKRAALKSALTSRVQG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D L E KTK L ++ AL++ D+N L+ARNI ++ V Sbjct: 121 GKFIVVDELKFDEIKTKKFQNVMDNLKVNKALVVLADN-DQNAVLSARNIADVKTTQVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ S +V +K+A+ +E+ + Sbjct: 180 MNVYDILKYSTVVATKAAVATIEEVY 205 >gi|195952644|ref|YP_002120934.1| 50S ribosomal protein L4 [Hydrogenobaculum sp. Y04AAS1] gi|226730675|sp|B4U745|RL4_HYDS0 RecName: Full=50S ribosomal protein L4 gi|195932256|gb|ACG56956.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. Y04AAS1] Length = 200 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 114/196 (58%), Gaps = 11/196 (5%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +D+F ++P++ IL V+RWQ ++R G +K R+EV + K+ QKGTG ARH Sbjct: 6 VELRDDVFNVEPKKHILWDVVRWQLAKRRQGTHSTKTRAEVNCSKKKIMPQKGTGNARHG 65 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK---- 132 ++S + F GGG GP P + L KK R +AL ALS K +N + V+++L+S Sbjct: 66 ARSANIFVGGGVVHGPTPRDYEYKLSKKYRKIALAMALSTKAKNNSVYVLESLLSSLGKP 125 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLD---RNFQLAARNIPNINLLPVQGINVYDILRC 189 + K + + + + + L++ Q D ++F +NIPN +LPV G+NVYDIL Sbjct: 126 KTKVAFELLKEKGISDKKVLVVTKDQNDIVSKSF----KNIPNTKVLPVVGLNVYDILWA 181 Query: 190 SKLVLSKSAIEALEDR 205 L++ + A+E + +R Sbjct: 182 DALLIEQGALEKIYER 197 >gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus] gi|81881827|sp|Q9DCU6|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus] gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus] gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus] gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus] gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus] Length = 294 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 188 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 GLNVYSMLKHQTLVLTLPSVAFLEDKL 273 >gi|116334268|ref|YP_795795.1| 50S ribosomal protein L4 [Lactobacillus brevis ATCC 367] gi|122269050|sp|Q03PV8|RL4_LACBA RecName: Full=50S ribosomal protein L4 gi|116099615|gb|ABJ64764.1| LSU ribosomal protein L4P [Lactobacillus brevis ATCC 367] Length = 207 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + ++ DIF ++P + ++ + Q R G K RS V Sbjct: 1 MTSVALYKQDGSQNGNVELNADIFGVEPNENVVFDTILMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKV LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYRLPKKVSRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D L KTK L+++ ++ + LAARN+ N+ ++P +G Sbjct: 121 ESFVVVDGLAFDAPKTKEFAAVLAGLNVTTKTLVVLEDDNVTAALAARNLTNVKVIPAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV DI KLV+++ A+ +E+ Sbjct: 181 LNVLDIADADKLVITQPALSQVEE 204 >gi|326203895|ref|ZP_08193757.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782] gi|325985993|gb|EGD46827.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782] Length = 207 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G I + +++F + +L V+ Q KR G +K +SEV Sbjct: 1 MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + +PKKV+ +A++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I V+D L + KTK +V L + S+ALI+ + + N +ARNIP I V Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLSNLKVDSSALIVIDSK-NENIVKSARNIPGIKTAYVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K +++K A+E +E+ + Sbjct: 180 TLNVFDILKYDKFIITKDAVEKVEEVY 206 >gi|46396649|sp|Q8XHS4|RL4_CLOPE RecName: Full=50S ribosomal protein L4 Length = 204 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIRGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|315652353|ref|ZP_07905345.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986] gi|315485476|gb|EFU75866.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986] Length = 206 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + +AL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D+ E KTK + L++ AL++ + ++N L+ RNI + + Sbjct: 121 NKFIVVDDFSMGEIKTKKMQQTLNNLNVKKALVV-CAENEKNTVLSVRNIYGVKAASPKT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V SK A++ +E+ + Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205 >gi|313897239|ref|ZP_07830783.1| 50S ribosomal protein L4 [Clostridium sp. HGF2] gi|312957960|gb|EFR39584.1| 50S ribosomal protein L4 [Clostridium sp. HGF2] Length = 209 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQTGKELNEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ ALS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N + V+D + KTK ++ A + ++ +G + F L+ RNIP + +L Sbjct: 121 NAMSVVDKFELEAPKTKAFNQIIADINAPKKTLFVVSEGEDFENAF-LSMRNIPTMMMLT 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 180 ADGLNVYDIVNANKIVFTEAAVKDVEE 206 >gi|28377833|ref|NP_784725.1| 50S ribosomal protein L4 [Lactobacillus plantarum WCFS1] gi|254556018|ref|YP_003062435.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1] gi|300767822|ref|ZP_07077732.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180012|ref|YP_003924140.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum ST-III] gi|46577245|sp|Q88XY5|RL4_LACPL RecName: Full=50S ribosomal protein L4 gi|28270666|emb|CAD63572.1| ribosomal protein L4 [Lactobacillus plantarum WCFS1] gi|254044945|gb|ACT61738.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1] gi|300494807|gb|EFK29965.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045503|gb|ADN98046.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 207 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ +F ++P + ++ + Q R G K RS Sbjct: 1 MTSVALFKQDGTQNGDVTLNDAVFGVEPNENVVFDAILMQRASMRQGTHAVKNRSARRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+R GG FGP P + LPKKV LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRKGGIVFGPTPRSYSYKLPKKVMRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++ +D+L KTK V L++ ++ + + LA RN+PN+ +L +G Sbjct: 121 NSLVAVDSLAFDAPKTKDFVNVLNNLNVDTKTLVLVEEDNEKAALAGRNLPNVKILKAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D+ KLV+++ A++ LE+ Sbjct: 181 VNVLDVANSDKLVVTQKALDQLEE 204 >gi|269925832|ref|YP_003322455.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798] gi|269789492|gb|ACZ41633.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798] Length = 223 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NL+G+ + VS+ +F ++P ++ + L Q R G ++ R+EV+ G Sbjct: 1 MQLPVYNLNGDIVSQLEVSDLVFGIQPNLAVMHQALVRQLANARTGTHDTRTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWRGGGVVFGPHPRSYEQRMPRKMRRLALRSALSQKVAEE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ L E +TK ++ L L+ ++I + + Q A N+PN+ ++ Sbjct: 121 RLLVVTGLSEIEPRTKAMIAALEKLGLAGQKVLIATNGRNESVQKAGSNLPNVKVIHASN 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ D+L+ L L A+ +L++ Sbjct: 181 LNIADLLKYDYLFLEDGAVNSLQE 204 >gi|260584417|ref|ZP_05852164.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633] gi|260157935|gb|EEW93004.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633] Length = 207 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I ++ DIF ++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVTLYKQDGTKNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK L + +++ + QLAARNIPN+ ++ Sbjct: 121 QKLVVVEALQFDAPKTKEFAQVLANLKVDTKVLVVVESSNEFAQLAARNIPNVTVVDETQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + V D++ KLVL+++A+ +E+ Sbjct: 181 VTVLDVVNNDKLVLTQAALSKVEE 204 >gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Pongo abelii] Length = 311 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKMALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LED+ Sbjct: 248 LNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|158319544|ref|YP_001512051.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs] gi|166990945|sp|A8MLE1|RL4_ALKOO RecName: Full=50S ribosomal protein L4 gi|158139743|gb|ABW18055.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 120/207 (57%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ I +SE++F ++ + + V++ Q +R G +K R+EV Sbjct: 1 MPKVAIYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKKVR LAL+ AL+ K S Sbjct: 61 GRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D L KTK +V + L++ ALI+ G + + + +A NI + V Sbjct: 121 NELIVLDELKLDAPKTKEMVNILKNLNVDKKALIVMGEKSEAVIK-SANNIQGVQTALVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ KL+++K A++ +E+ + Sbjct: 180 TINVYDILKYDKLIITKDAVQKVEEVY 206 >gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] gi|302379795|ref|ZP_07268279.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3] gi|303234753|ref|ZP_07321379.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4] gi|226730666|sp|B0RZU1|RL4_FINM2 RecName: Full=50S ribosomal protein L4 gi|167830658|dbj|BAG07574.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] gi|302312383|gb|EFK94380.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3] gi|302494094|gb|EFL53874.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 114/207 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N GE+ G + ++E IF + + ++ V++ Q KR G +K RSEV Sbjct: 1 MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P +A+PKKVR LA++ L++K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L TK V + + ++ + D + RNI N+ + + Sbjct: 121 NEMIVLDKLNLDAISTKKAVEVLKNIKADKKALVVIDKNDDTLYRSFRNIENVAICEAKL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD L+ + LV++ A++ LE+ F+ Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207 >gi|325282641|ref|YP_004255182.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP] gi|324314450|gb|ADY25565.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP] Length = 204 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 100/175 (57%), Gaps = 5/175 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+ WQ +R G + +K R++VA TG KM+ QKGTG ARH ++V F GGG AFG Sbjct: 26 VLHEVVTWQLAGRRRGTASTKTRAQVARTGRKMFSQKGTGNARHGDRTVPTFVGGGVAFG 85 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV--TRFRALDLS 149 P P + LP+KVR L L AL+D+ + + +D + KTK V + +D S Sbjct: 86 PKPRDYSYTLPRKVRQLGLAMALADRQAAGMLTAVDGY-DLDGKTKSFVQWAKDNGMDGS 144 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++I D N +ARN+ +LPV G+N YDILR +LV+ A+E ++ Sbjct: 145 EKVLI--VTDDANVLRSARNVSWATVLPVAGLNTYDILRHDRLVIDAVALEPAQE 197 >gi|218885188|ref|YP_002434509.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226730654|sp|B8DN97|RL4_DESVM RecName: Full=50S ribosomal protein L4 gi|218756142|gb|ACL07041.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 206 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ ++F ++ + IL V+R R G +K R+ V+ Sbjct: 1 MAVVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KKVR LAL+ ALS + Sbjct: 61 GAKPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKVNKKVRQLALKMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV+ + E KTK AL L AL+I + D L+ARNIP I L+ Sbjct: 121 ENLMVVKGIELPEIKTKLFAKVAGALGLEKALVIT-AEADTTLALSARNIPGITLITADQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ KLV+ + A+E+++ R K Sbjct: 180 LSVYEILKHPKLVMFEGAVESVQARLK 206 >gi|22478084|gb|AAH37064.1| Mrpl4 protein [Mus musculus] Length = 306 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 80 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 139 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 140 WQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 199 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 200 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAV 258 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 259 GLNVYSMLKHQTLVLTLPSVAFLEDKL 285 >gi|118579120|ref|YP_900370.1| 50S ribosomal protein L4 [Pelobacter propionicus DSM 2379] gi|166199839|sp|A1ALU2|RL4_PELPD RecName: Full=50S ribosomal protein L4 gi|118501830|gb|ABK98312.1| LSU ribosomal protein L4P [Pelobacter propionicus DSM 2379] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++ + G + +++D+F ++ ++ LR Q +R G K+K RSEVA + Sbjct: 1 MPSIAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR Q+ GGG AFGP P ++ KK R A+ ALS + + Sbjct: 61 GKKPFKQKGTGNARQGCVRAPQYPGGGVAFGPQPKEYHLSMNKKARKSAICSALSLQCKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I V+D L TK V + ++ +LII N QL+ RN+P++ LL Sbjct: 121 NRITVMDKLDFSSISTKAFVDFMKRFEIERSLIITD-DFSNNLQLSCRNVPHVKLLKHDA 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +N++DIL+ ++ ++ A++++E Sbjct: 180 LNIHDILKYKNIIFTQGAVQSVE 202 >gi|110803426|ref|YP_699662.1| 50S ribosomal protein L4 [Clostridium perfringens SM101] gi|122956495|sp|Q0SQE5|RL4_CLOPS RecName: Full=50S ribosomal protein L4 gi|110683927|gb|ABG87297.1| 50S ribosomal protein L4 [Clostridium perfringens SM101] Length = 204 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLNFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIEGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|256847764|ref|ZP_05553209.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN] gi|256715453|gb|EEU30429.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 111/204 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N DG G I +++ IF ++ + + Q R G K RS V Sbjct: 1 MTSVALFNQDGSQNGNIDLNDAIFGVEVNENAEYESIIRQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYNYRLPRKVRQLAIKSALSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D++ KTK + L ++ ++I D+N L+ARN+ +N++ G Sbjct: 121 DKFVVVDSINFDAPKTKEFASVLDNLKVNEKVLIVVTDDDKNAGLSARNLSKVNVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+ +++ K+V++KSA+ +E+ Sbjct: 181 VNILNVVDAQKIVITKSALSQVEE 204 >gi|309777134|ref|ZP_07672097.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915004|gb|EFP60781.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 209 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQTGKELKEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ ALS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N + V+D + KTK +V A + ++ +G + F L+ RNIP + +L Sbjct: 121 NAMGVVDKFELEAPKTKAFNQIVADINAPKKTLFVVSEGEDFENAF-LSMRNIPTMMMLT 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 180 ADGLNVYDIVNANKIVFTEAAVKDVEE 206 >gi|320526870|ref|ZP_08028060.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204] gi|320132838|gb|EFW25378.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204] Length = 209 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 16/209 (7%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++ V N + + I +S+ +F ++P QQ + +L +Q+ R G + R+EV+ Sbjct: 1 MAKIDVFNQEAKAVKSIELSDAVFGIEPNQQAMYDAILVYQAGL-RQGTHATLTRAEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 TG K + QKGTGRAR S +Q+R GG AFGP P L +KVR LALR ALS+K Sbjct: 60 TGKKPFRQKGTGRARQGSTRATQWRHGGIAFGPQPRKYDFKLNRKVRQLALRSALSEKLQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-----CQLDRNFQ---LAARNIP 171 + + V++NL E KTK +A+ L NA D + D +F ++ RNIP Sbjct: 120 ESSLTVLENLSFDEIKTK------KAVALMNAFGFDRKTLFVAEADEDFDNAYVSMRNIP 173 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIE 200 N ++ V +NVYDI+ K+V ++ A E Sbjct: 174 NALVVTVSSLNVYDIVNADKVVFTEKAAE 202 >gi|237786394|ref|YP_002907099.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385] gi|259491550|sp|C4LL51|RL4_CORK4 RecName: Full=50S ribosomal protein L4 gi|237759306|gb|ACR18556.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385] Length = 219 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V DG G + + +F ++ +L +V+ Q +R G +K R +V G Sbjct: 4 LTLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 64 RKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYDQRTPKKMKAAALRGALSDRARHD 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+++LV + + F R D + L++ G + D N +ARN+PN+++LP Sbjct: 124 RIHVVEDLVPGQTPSTKAARTFIGRLTDRKSVLVVLGRE-DVNSIKSARNLPNVHILPSD 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L LV S A+ A +R Sbjct: 183 QLNTYDVLNSDDLVFSVEALNAFIER 208 >gi|167748431|ref|ZP_02420558.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662] gi|317472036|ref|ZP_07931368.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA] gi|167652423|gb|EDR96552.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662] gi|316900440|gb|EFV22422.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA] Length = 206 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+SV N++G + +++++ IF ++ + ++ + Q R G +K RSEV Sbjct: 1 MAEVSVLNMEGNEVEKLNLNDGIFGVEINEHLVHLAVVSQLANNRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPKPREYSKKLNKKERRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + KTK + L++ AL+I G + D N L+ARNIP + Sbjct: 121 NKFIVVDEFKFDDVKTKNVANMLNNLNVKKALVIMGDKND-NLILSARNIPGVKTALTST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+SK A+ +E+ + Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205 >gi|169830437|ref|YP_001716419.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator MP104C] gi|226730652|sp|B1I1I9|RL4_DESAP RecName: Full=50S ribosomal protein L4 gi|169637281|gb|ACA58787.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator MP104C] Length = 207 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V N++G+ G I +SE +F +L V+ Q +R G +K RSEV Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG FGP P + +PKKV+ LAL+ AL+ K + Sbjct: 61 GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D L KTK + L ++ + + N + +ARN+P + L + Sbjct: 121 GRILVLDALELPGPKTKEMARILANLKAGEGALVVTAERNVNVEKSARNLPGVKSLEARQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYD+L L++++ A+ +E+ Sbjct: 181 LNVYDLLNHPHLIITRDAVARVEE 204 >gi|328875550|gb|EGG23914.1| hypothetical protein DFA_06052 [Dictyostelium fasciculatum] Length = 333 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 2/192 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G I++ +F + + +L R++RWQ + R G ++ +V T K QKG GRAR Sbjct: 121 GEINLLNSVFKVPLRIDLLHRMIRWQRAKARQGTHYAQNMGDVERTNKKPMAQKGNGRAR 180 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 + Q GG +AF P P H+L KKVR AL ALS K ++++D+L + Sbjct: 181 QGTNHAIQMVGGARAFPPKPRDHSHSLQKKVRKQALCVALSTKLAQGKLIIVDDLQVETH 240 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK LV + +L+++ + NF LAA NI NI+L+P +GINVY IL+ LV+ Sbjct: 241 KTKELV-QLLPEAWGRSLLVNN-EFSNNFNLAAYNIINIDLVPDRGINVYSILQKDTLVI 298 Query: 195 SKSAIEALEDRF 206 SK +IE L+ R Sbjct: 299 SKKSIEILQARL 310 >gi|153812866|ref|ZP_01965534.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174] gi|149831078|gb|EDM86167.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174] Length = 206 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L AL++ D+ L+ARNI ++ V Sbjct: 121 NKLVVVDSLALAEAKTKEMQKVLTNLKADKALVVTADD-DQKVVLSARNIADVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ + +V++K A+ ++E+ + Sbjct: 180 INVYDVMKHNTVVVTKDAVASIEEVY 205 >gi|294630894|ref|ZP_06709454.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14] gi|292834227|gb|EFF92576.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14] Length = 218 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF + K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGEKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVVEGEISTKAAKTLFGKISERKNLLLVADRSDEAAWLSARNLPQVHILEPG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 QLNTYDVLVSDDVVFTKAAFESF 203 >gi|261264937|gb|ACX55827.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 208 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG RAR + Q+RGGG FGP P + +PKK+R ALR ALS K Sbjct: 61 GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRSALRSALSFKVQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++D + KTK L+ +++ D N +L+ARNIP + + Q Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+NV D+ ++++++A + +E+ Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEE 205 >gi|238916266|ref|YP_002929783.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750] gi|259491557|sp|C4Z2T1|RL4_EUBE2 RecName: Full=50S ribosomal protein L4 gi|238871626|gb|ACR71336.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750] Length = 206 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q R G +K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + +AL ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D E KTK L + AL++ + ++N L+ RNIP + + Sbjct: 121 NKIVVLDAFNLDEIKTKKFAEVMSNLKVDKALVVIEGE-NKNVVLSGRNIPTVKVSATNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L+ LV++K+A+E LE+ + Sbjct: 180 INTYDVLKYETLVVTKAAVEKLEEVY 205 >gi|90962405|ref|YP_536321.1| 50S ribosomal protein L4 [Lactobacillus salivarius UCC118] gi|227891545|ref|ZP_04009350.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741] gi|301300211|ref|ZP_07206423.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a] gi|122448605|sp|Q1WS91|RL4_LACS1 RecName: Full=50S ribosomal protein L4 gi|90821599|gb|ABE00238.1| LSU ribosomal protein L1E [Lactobacillus salivarius UCC118] gi|227866692|gb|EEJ74113.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741] gi|300215030|gb|ADJ79446.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713] gi|300852152|gb|EFK79824.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 207 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 105/195 (53%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G + ++E IF ++P ++ + Q R G K RS V G K + QKG Sbjct: 10 DGNQNGEVQLNEAIFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGGGKKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+ GGG FGP P + LP+KVR LA++ LS K ++V+D L Sbjct: 70 TGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVADESLVVVDAL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L++++ +++ + LAARN+ N+ ++P +G+NV D++ Sbjct: 130 NFDAPKTKAFAEVLSNLNVNSKVLVVLEDDNTTAALAARNLKNVTVIPAKGLNVLDVINN 189 Query: 190 SKLVLSKSAIEALED 204 KLV+++ A+ +E+ Sbjct: 190 DKLVITQGALSQVEE 204 >gi|219666491|ref|YP_002456926.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DCB-2] gi|254803731|sp|B8G1W7|RL4_DESHD RecName: Full=50S ribosomal protein L4 gi|219536751|gb|ACL18490.1| ribosomal protein L4/L1e [Desulfitobacterium hafniense DCB-2] Length = 207 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G + + E +F ++P ++ + + Q +R G + R EV Sbjct: 1 MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L E KT+ +V +AL++ +I + +ARNI I V+G Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVGKKALIVTDEFMETIDRSARNIAGIKTTAVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N+YD+L +V++K+A+ E+ Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEE 204 >gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis carolinensis] Length = 314 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+++ D G+ + D+FA+ P+ IL V WQ KRI +K+K R+EV G K Sbjct: 90 SLKHYDARHMGLADLHPDVFAVMPRIDILHTVATWQRNFKRISYAKTKTRAEVRGGGRKP 149 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K +++ Sbjct: 150 WRQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYFYMLPMKVRVQGLKVALTVKLAQDNL 209 Query: 124 MVIDNLVSKECKTKYLV--TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+D+L +YL+ R+R S L + ++ N + AA ++ I +LP+ G+ Sbjct: 210 HVVDSLEIPTSDPQYLMDLARYRHWGTS-VLFVHVNEIPENIKSAANDLKTITILPITGL 268 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ LVL+ + LE + Sbjct: 269 NVHSMLKYETLVLTLDTVSFLEKKL 293 >gi|57234685|ref|YP_181219.1| 50S ribosomal protein L4 [Dehalococcoides ethenogenes 195] gi|109893590|sp|Q3Z980|RL4_DEHE1 RecName: Full=50S ribosomal protein L4 gi|57225133|gb|AAW40190.1| ribosomal protein L4 [Dehalococcoides ethenogenes 195] Length = 210 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 107/203 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE IS+SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ V+D L E KT+ + AL + + +I D NF +ARNIP + P + Sbjct: 121 ELKVVDQLSFDEPKTRDMAKILAALQVMSPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+LR +LV+++ A+ +E+ Sbjct: 181 NISDMLRNKQLVMTEEAVRQVEE 203 >gi|121534760|ref|ZP_01666581.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1] gi|121306780|gb|EAX47701.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1] Length = 208 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 117/206 (56%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ G G I +S+ +F ++ + +L + + Q +R+G +K R V Sbjct: 1 MPKVAVYDITGAQTGEIELSDSVFGVEVNKAVLHQAVVMQLANQRLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P ++P+K R LAL+ ALS K S Sbjct: 61 GKKPWRQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYAISMPRKARRLALKSALSAKVQS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+++ E KTK +V L +++ ALII + D N +ARNIP + + Sbjct: 121 GEMVVLEDFTFAEPKTKNVVKMLDNLKVADDKALIIL-SEADENVIKSARNIPGVKAIAS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 GINVYD+L K++++K A+ +E+ Sbjct: 180 TGINVYDLLYHDKVLVTKGAVARIEE 205 >gi|206901882|ref|YP_002250702.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12] gi|206740985|gb|ACI20043.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12] Length = 209 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V N E G I + E++F ++ + + + R G +K R EV + Sbjct: 1 MIQVPVYNQKAEKVGEIELKEELFGVEKRPDLFYTCVVMHLANGRQGTHSTKRRGEVNRS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR + + GGG+ FGP P + +PKK+R LA+R ALS K Sbjct: 61 GRKVWPQKGTGHARQGDRKAPHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-DRNFQLAARNIPNINLLPVQ 179 N ++++D + + KTK LV L+++ ++ G D N + AA N+ + + Sbjct: 121 NALIILDKIELSQPKTKELVNILNNFGLADSKVLIGVPAKDENLKRAAMNLEKVKTMIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ L+L+ AI LE+ F Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207 >gi|270307843|ref|YP_003329901.1| ribosomal protein L4 [Dehalococcoides sp. VS] gi|270153735|gb|ACZ61573.1| ribosomal protein L4 [Dehalococcoides sp. VS] Length = 210 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 109/203 (53%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE IS+SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ VID L +E KT+ + AL + + +I D NF +ARNIP++ P + Sbjct: 121 ELKVIDQLSFEEPKTRDMAKILAALQVISPALIAVDNPDTNFIKSARNIPSVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+L+ +LV+++ A+ +E+ Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203 >gi|269837067|ref|YP_003319295.1| 50S ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745] gi|269786330|gb|ACZ38473.1| ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745] Length = 209 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V ++ G++ G I +++ +F ++P ++ + Q R+G +K R EV G Sbjct: 1 MQVPVYDVTGQETGQIELADSVFGIEPNVPVMHQAYVRQMANARLGTHDTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRARH S +RGGG FGP P +P+K+R LA+R LS K ++ Sbjct: 61 RKPWRQKGTGRARHGSIRSPLWRGGGVVFGPHPRKYTQRMPRKMRRLAIRSVLSAKMKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLP 177 ++V++ L E +TK ++ L +A +++D + N + A N+ ++ +LP Sbjct: 121 QVVVVEGLTELEPRTKAMIQTLARLPKGDARSTLILVD--EPRENLRRGANNLEHVRVLP 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 Q +N+ D+L+ +L+L++ A++ + Sbjct: 179 AQYVNMRDVLKYERLLLTREAVDVIH 204 >gi|149020530|gb|EDL78335.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_a [Rattus norvegicus] Length = 302 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 14/215 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQG--------ILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRWSLTMKYKLDILHQVAVWQRNFKRISYAKTKTRAE 127 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115 V+ G K + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ Sbjct: 128 VSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALT 187 Query: 116 DKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIP 171 K +D+ ++D+L +YL + ++R S+ L++D ++ +N A + Sbjct: 188 VKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVMAATSRLN 246 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 SFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281 >gi|110004230|emb|CAK98568.1| 50s ribosomal protein l4 [Spiroplasma citri] Length = 208 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + G ISV++ I+ ++P Q + + Q R G K+K R+EV+ G Sbjct: 1 MKLQVLDAKGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQAAMRQGTHKTKTRTEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P + + KKVR LA++ ALS K Sbjct: 61 KKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKNYLKHVNKKVRKLAIKSALSLKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +IM+ID + TK +V L ++ LII + NF+ ++RNI +N++ Sbjct: 121 KNIMIIDQFGIDKPSTKAMVEVLNNLKVNGEKLLIITTEGDEVNFK-SSRNIEKVNIITS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GIN+YD+L +KL++++ A++A+E+ + Sbjct: 180 TGINIYDLLNANKLLVTEQAVKAIEEVY 207 >gi|150392159|ref|YP_001322208.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF] gi|166990944|sp|A6TWI1|RL4_ALKMQ RecName: Full=50S ribosomal protein L4 gi|149952021|gb|ABR50549.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF] Length = 207 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G+ + +SE+IF ++ + +L ++ Q KR G +K R+EV Sbjct: 1 MPKVAVYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG F P P + LP+KV+ LAL+ AL+ K + Sbjct: 61 GRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK +V + L+ +++ + + +A NIP + V Sbjct: 121 EELLVLDELSLDTPKTKDMVNILKNLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL K +++K A+E +E+ + Sbjct: 181 INVYDILNHDKFIITKDAVEKVEEVY 206 >gi|325261495|ref|ZP_08128233.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5] gi|324032949|gb|EGB94226.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5] Length = 206 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 116/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q R G K+K R+EV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVDVNEHLVHMAVVSQLANNRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +VID L E KTK L+++ AL++ DG ++N +++ARNI + Sbjct: 121 NKFIVIDELNFDEIKTKKFQEVLNNLNVNKALVVLEDG---NKNVEISARNIKEVKTAHT 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + ++++K+A+ +E+ + Sbjct: 178 NTINVFDILKYNTVIVTKAAVATIEEVY 205 >gi|328884427|emb|CCA57666.1| LSU ribosomal protein L4p [Streptomyces venezuelae ATCC 10712] Length = 216 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 105/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + E+IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKTGTVELPEEIFGAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKVAALRGALSDRATH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGEISTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K+A+E+ Sbjct: 181 LNTYDVIVSDDVVFTKAALESF 202 >gi|290581288|ref|YP_003485680.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025] gi|254998187|dbj|BAH88788.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G +++++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVTLNDAIFGIEPNESVVFDVIISQRANLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +D L + KTK T AL++ + +++ + ++ +L+ARN+PN+ + Sbjct: 121 EKFVAVDALSFEAPKTKEFATVLAALNVDSKVLVILEEGNQAAELSARNLPNVKVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISNIEE 204 >gi|297567283|ref|YP_003686255.1| 50S ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946] gi|296851732|gb|ADH64747.1| ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946] Length = 211 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 107/211 (50%), Gaps = 14/211 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ LSV + G+ + D+ A P+ +L V++WQ ++R G + +K R V Sbjct: 1 MVTLSVLSAKGQK------ARDLEATLPEVNPHVLYEVVKWQMAKRRAGTAATKTRGMVN 54 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 +T KMY QK TGRARH F GGG FGP P + LPKKVR L L AL+D+ Sbjct: 55 FTTKKMYSQKHTGRARHGDYGAPIFVGGGTVFGPQPRDYSYTLPKKVRKLGLAMALADRA 114 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINL 175 +++ + KTK + L + L++ +L R AARN+P + Sbjct: 115 KDGKLLIAEGFEGVNGKTKEFLAWATGAGLDGSQTVLLVTANELVRR---AARNLPWVRT 171 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L +G+NVYDILR LVL A EA + R Sbjct: 172 LAPEGLNVYDILRQEWLVLDMPAWEAAQARL 202 >gi|227485524|ref|ZP_03915840.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172] gi|227236523|gb|EEI86538.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE+ G + ++E IFA K + + V++ Q KR G +K R+EV Sbjct: 1 MPKVNILNIKGENVGELELNETIFATKVSEHAVYEVIKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + L KK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYRLAKKLRRKALYSVLTSKLND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L + KTK AL+ + + D + RNI + + + Sbjct: 121 NELIVVDSLALENAKTKEAKAALVALNADRKAYVVTAEKDELVYRSFRNIEGVEVAEARL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R KLV++K AI L++ F Sbjct: 181 INVYDLVRHDKLVITKDAIAKLQEVF 206 >gi|222056704|ref|YP_002539066.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32] gi|254803736|sp|B9M6U4|RL4_GEOSF RecName: Full=50S ribosomal protein L4 gi|221565993|gb|ACM21965.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 115/203 (56%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V N + G I +S+ +F + ++ ++ ++ Q +R G K R+ V+ + Sbjct: 1 MAKLDVYNTSHKKVGEIELSDAVFNDEVREYLIHEAVKIQLANRRAGTVAVKNRAAVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR K Q+ GGG AFGP P ++ KK R ALR ALS F + Sbjct: 61 GKKPFKQKGTGQARQGCKRAPQYPGGGVAFGPQPKTYNLSMNKKARRAALRSALSLLFKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + TK V + L AL++ + +RN +L+ARNI N+ +L +G Sbjct: 121 DKLTVLDAINLDTVSTKNFVGVLKGFSLDKALVVTDAE-NRNLELSARNIKNVKVLKTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +N++D+++ +++ +++++ +E Sbjct: 180 LNIFDLMKYQRVIFTENSVRKVE 202 >gi|227501135|ref|ZP_03931184.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098] gi|227216720|gb|EEI82121.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHAVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKLND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L + KTK V A++ + + D + RNI +++ Sbjct: 121 NELVVLDSLSLENAKTKEAVKVLEAVNAGKKAYVVTAENDTLVYRSFRNIEGVDVAAASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R +KLV++K AI LE+ F Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206 >gi|291518044|emb|CBK73265.1| LSU ribosomal protein L4P [Butyrivibrio fibrisolvens 16/4] Length = 206 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ G + +++ IFA++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVFNMEGKEVGSMDLNDSIFAVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSVVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK L++ AL++ D+N ++A+NIP + Sbjct: 121 NKFIVVDELKLDSIKTKDFAKVLTNLNVEKALVVLDTN-DQNVVMSAKNIPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V++K+A++ +++ + Sbjct: 180 INVYDILKYNTVVVTKAAVDQIQEVY 205 >gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens] gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens] gi|74733471|sp|Q9BYD3|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens] gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens] gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens] gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens] Length = 311 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LED+ Sbjct: 248 LNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|282882504|ref|ZP_06291125.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B] gi|281297646|gb|EFA90121.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G I V+++IF + ++ V++ +R G +K RSEV Sbjct: 1 MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG F P + PKKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L E KTK +V + + +I + N +ARNI + V+ Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSARNIEGVKTEFVKN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + LV++K A++ LE+ F Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206 >gi|308809341|ref|XP_003081980.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri] gi|116060447|emb|CAL55783.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri] Length = 275 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 24/217 (11%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++ IF + + RV+RWQ + R G K+K R EV+ T K QKG GRA Sbjct: 53 RGEATLPGRIFDQPLRVDVAHRVVRWQRAKARAGTHKTKTRGEVSGTTRKARPQKGQGRA 112 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R Q RGGG A GPVP +ALPKKVR + L+ ALS + I+++D+ E Sbjct: 113 RVGMLRAPQMRGGGVAHGPVPRSHAYALPKKVRRMGLKVALSARAAEGKIVIVDSFAGME 172 Query: 134 CKTKYLVTRFRALD----------LSNALIIDGCQL--------------DRNFQLAARN 169 KT+ + L + LI+DG + ++++RN Sbjct: 173 PKTRVMKETLERLTGDMGLAAGGKFHSTLIVDGEFEETSEEDDDEETYSPNEIVRISSRN 232 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P++ +LP G NVY ILR LV++KS +E L R Sbjct: 233 LPHVEVLPQIGANVYSILRRRTLVMTKSGLEQLIRRL 269 >gi|259047554|ref|ZP_05737955.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175] gi|259035745|gb|EEW37000.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175] Length = 207 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I ++ DIF ++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVTLFKQDGTTNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V++ L KTK L++ +++ + L+ARNIPN+ ++ Sbjct: 121 NKLVVVEALQFDAPKTKEFAQVLSNLNVDTKVLVVVESSNDFALLSARNIPNVTIVDETD 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + V D++ KL+ +K+A+ +E+ Sbjct: 181 VTVLDVVNNDKLLFTKAALSKVEE 204 >gi|269122980|ref|YP_003305557.1| 50S ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112] gi|268314306|gb|ACZ00680.1| ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112] Length = 214 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V NL+GE+KGV +VS +IF L+P + ++ VL + R G + +K R EV+ G K Sbjct: 6 LKVYNLNGEEKGVTTVSSEIFGLEPNKYVMHEVLTAELAASRAGTASTKTRGEVSGGGRK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ + + D+ Sbjct: 66 PFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYDKKVNKKVRKLALKSALAVRIQNGDV 125 Query: 124 MVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQL---DRNFQLAARNIPNINLLPV 178 +V+++ + KTK V +++ L I L D N L+ RNI +L Sbjct: 126 IVLEDYMLDTPKTKAFVNFTEKVNMVEDKKLFIVNDYLEDADWNLYLSVRNIEKTEILDP 185 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + ++VY +L+ +K+V++K A+ +E+ Sbjct: 186 RELSVYALLKFNKVVITKEALATIEE 211 >gi|167767802|ref|ZP_02439855.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1] gi|317497094|ref|ZP_07955421.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710541|gb|EDS21120.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1] gi|291558861|emb|CBL37661.1| LSU ribosomal protein L4P [butyrate-producing bacterium SSC/2] gi|316895639|gb|EFV17794.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 206 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ + ++++IF ++ + ++ + Q R G K+K RSEV Sbjct: 1 MATVSVLNMEGKEVEKLELNDNIFGVEINEHLVHLAVVSQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK R +AL+ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPREYTKKLNKKERRIALKSALTSRVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +VID E KTK + ++ AL++ G + D N L+ARN+P + Sbjct: 121 DKFVVIDEFKFDEIKTKNVKAMLDSVGAKKALVVMGSKND-NLVLSARNLPGVKTALTST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+SK A+ +E+ + Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205 >gi|257870518|ref|ZP_05650171.1| ribosomal protein L4 [Enterococcus gallinarum EG2] gi|257804682|gb|EEV33504.1| ribosomal protein L4 [Enterococcus gallinarum EG2] Length = 207 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 2/196 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGSQNGEITLNEEIFGIEPNETVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K SN+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVASNNLVAVEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQGINVYDILR 188 KTK L + + +++ + + +F L+ARN+P+++++ ++V D++ Sbjct: 130 SFDAPKTKEFKQVLANLTIDSKVLVV-LETENDFAALSARNLPSVSVVTADNVSVLDVVS 188 Query: 189 CSKLVLSKSAIEALED 204 K++++++A+ +E+ Sbjct: 189 ADKMLVTQTALTQIEE 204 >gi|254303419|ref|ZP_04970777.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323611|gb|EDK88861.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 209 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D V + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEE 206 >gi|229829428|ref|ZP_04455497.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM 14600] gi|229791859|gb|EEP27973.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM 14600] Length = 206 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ + +++ +F ++ ++ + Q KR G K+K RSEV Sbjct: 1 MAKVSVFNMEGKEVEQMELADSVFGVEVNDHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P L +K + AL ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGVVVFAPTPRDYSFKLNRKEKRAALLSALSSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L E KTK + L + AL++ G Q D ++ARNIP++ Sbjct: 121 NKLIVVDQLAFDEIKTKKFAEVLKNLKVEKALVVLG-QDDEKAIISARNIPDVKTAQTNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV++K A++++E+ + Sbjct: 180 INVYDILKYNTLVVTKEAVKSIEEVY 205 >gi|227431340|ref|ZP_03913393.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352933|gb|EEJ43106.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 207 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 108/203 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L K KT+ L L ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 NKLVVVDALSFKAPKTQDLKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|269958585|ref|YP_003328372.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel] gi|269848414|gb|ACZ49058.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel] Length = 208 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 117/208 (56%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N+ E G + ++ +F ++P++ +L V+ WQ ++R G K++ S+V T Sbjct: 1 MEVNVVNIKNEVVGQLELNASVFGVQPRRDVLRDVVDWQLAKRRAGTHKTRCISDVRGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K + Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120 Query: 122 DIMVIDN---LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D+ ++ K + F A S ++ +G + A RN+PN++LL Sbjct: 121 KLVVLDDSGLVLEKTADARAAFGNFGAYG-SYLVVAEG--YEDKVACACRNLPNVDLLKY 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINV DILR ++L+ A++ LE R Sbjct: 178 AGINVLDILRHDCVILTVGAVKCLESRL 205 >gi|331268414|ref|YP_004394906.1| 50S ribosomal protein L4/L1e [Clostridium botulinum BKT015925] gi|329124964|gb|AEB74909.1| ribosomal protein L4/L1e [Clostridium botulinum BKT015925] Length = 206 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + ++E +FA++ +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPREYRMAIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++NL + KTK +V A + LI+ + ++ + RNI ++PV Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAESNEVVYK-SIRNIEGATIVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205 >gi|62287203|sp|Q5SHN9|RL4_THET8 RecName: Full=50S ribosomal protein L4; AltName: Full=L1e gi|116668237|pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. gi|116668298|pdb|2J03|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. gi|119389738|pdb|2HGJ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. gi|119389795|pdb|2HGQ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgp. gi|119389851|pdb|2HGU|F Chain F, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgr. gi|157836524|pdb|2V47|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. gi|157836580|pdb|2V49|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2. gi|211938858|pdb|2JL6|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 2 Of 4). This File Contains The 50s Subunit. gi|211938916|pdb|2JL8|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 4 Of 4). This File Contains The 50s Subunit. gi|226887439|pdb|2WDI|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887471|pdb|2WDJ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|226887528|pdb|2WDL|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887585|pdb|2WDN|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|237823569|pdb|2WH2|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823628|pdb|2WH4|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|260100015|pdb|3HUX|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule I. gi|260100071|pdb|3HUZ|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule Ii. gi|261824524|pdb|2WRJ|F Chain F, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 2 Of 4). gi|261824586|pdb|2WRL|F Chain F, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State. (Part 4 Of 4). gi|261824649|pdb|2WRO|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 2 Of 4). gi|261824708|pdb|2WRR|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 4 Of 4). gi|281307196|pdb|3KIR|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 2 Of 4) gi|281307254|pdb|3KIT|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 4 Of 4) gi|281307312|pdb|3KIW|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 2 Of 4) gi|281307370|pdb|3KIY|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 4 Of 4) gi|288965634|pdb|3KNI|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule I gi|288965666|pdb|3KNK|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule Ii. gi|288965698|pdb|3KNM|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule I. gi|288965730|pdb|3KNO|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule Ii gi|294979478|pdb|3I8F|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f (50s). gi|294979558|pdb|3I8I|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g (30s). gi|294979616|pdb|3I9C|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B. The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule A In The S Asymmetric Unit Is Deposited As 3i9d (30s) And 3i9e (50s) gi|294979670|pdb|3I9E|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A. The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule B In The S Asymmetric Unit Is Deposited As 3i9b (30s) And 3i9c (50s) gi|295982115|pdb|2X9S|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982174|pdb|2X9U|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|307568002|pdb|2XG0|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 2 Of 4) gi|307568060|pdb|2XG2|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 4 Of 4) gi|309320290|pdb|3OH5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320320|pdb|3OH7|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320392|pdb|3OHJ|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320422|pdb|3OHK|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320473|pdb|3OHZ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320524|pdb|3OI1|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320575|pdb|3OI3|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320626|pdb|3OI5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|312207714|pdb|2XQE|F Chain F, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s Ribosome With A Gtp Analog gi|313754038|pdb|2XTG|F Chain F, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) gi|313754096|pdb|2XUX|F Chain F, Trna Tranlocation On The 70s Ribosome: The Post- Translocational Translocation Intermediate Ti(Post) gi|325533443|pdb|2Y0V|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533502|pdb|2Y0X|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533561|pdb|2Y0Z|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533620|pdb|2Y11|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533679|pdb|2Y13|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533738|pdb|2Y15|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533797|pdb|2Y17|F Chain F, Ef-Tu Complex 3 gi|325533856|pdb|2Y19|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|55773073|dbj|BAD71514.1| 50S ribosomal protein L4 [Thermus thermophilus HB8] Length = 210 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 32 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 92 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 151 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 152 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 >gi|126322913|ref|XP_001367717.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 426 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 115/211 (54%), Gaps = 6/211 (2%) Query: 2 IELSVRNLDGEDK---GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 ++ V +L G +K G+ + D+FA+ P+ IL V WQ KRI +K+K R+EV Sbjct: 195 VQAWVESLQGYEKTRVGLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEVR 254 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDK 117 G K + QKG+GRARH S +RGGG A GP P + LP KVR L L+ AL+ K Sbjct: 255 GGGRKPWRQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVK 314 Query: 118 FCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +D+ ++D+L +YL + R R S L+ ++ +N A N+ INL Sbjct: 315 LMQDDLHIVDSLELPTSDPRYLLDLVRHRYWGDSVLLVDVDEEMPQNIVSAVSNLKTINL 374 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+NV+ +L+ LVL+ + + LE + Sbjct: 375 VPAVGLNVHSMLKHQTLVLTLNTVAFLEKKL 405 >gi|323706451|ref|ZP_08118012.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum LX-11] gi|323534171|gb|EGB23961.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum LX-11] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++ E G I +S+++F ++ ++ + +R G +K R EV Sbjct: 1 MPKVAVYNINAEQIGEIELSDNVFGVEVNVPVMHEAVLNYLANQRQGTHSTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + +PKKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWVKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N+I+VID++ E KTK + + D+ NALI+ DG + N L++RNIPN+ + Sbjct: 121 NEIIVIDDINIDEPKTKKIAEMLKKFDVKNALIVIPDGKE---NVILSSRNIPNVKAVFA 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ + +++K A+ +E+ + Sbjct: 178 NSLNTYDVLKYDRFIITKDAVNKVEEVY 205 >gi|253580620|ref|ZP_04857884.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39B_FAA] gi|251847991|gb|EES75957.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEVNEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L + KTK + L AL+I D+N L+ARNI ++ Sbjct: 121 NKLVVVDALTLADVKTKEMQKVLTNLKAEKALVITATD-DKNVILSARNITDVQTATPST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++ + ++++K A+ ++E+ + Sbjct: 180 INVYDVMNHNTVIVTKDAVASIEEVY 205 >gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] gi|227555854|ref|ZP_03985901.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22] gi|229546963|ref|ZP_04435688.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322] gi|229550552|ref|ZP_04439277.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200] gi|255971710|ref|ZP_05422296.1| 50S ribosomal protein L4 [Enterococcus faecalis T1] gi|255974710|ref|ZP_05425296.1| 50S ribosomal protein L4 [Enterococcus faecalis T2] gi|256855164|ref|ZP_05560525.1| ribosomal protein L4 [Enterococcus faecalis T8] gi|256956861|ref|ZP_05561032.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5] gi|256960668|ref|ZP_05564839.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96] gi|256964133|ref|ZP_05568304.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704] gi|257078531|ref|ZP_05572892.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1] gi|257081498|ref|ZP_05575859.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol] gi|257084146|ref|ZP_05578507.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1] gi|257087973|ref|ZP_05582334.1| 50S ribosomal protein L4 [Enterococcus faecalis D6] gi|257088650|ref|ZP_05583011.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188] gi|257417577|ref|ZP_05594571.1| 50S ribosomal protein L4 [Enterococcus faecalis AR01/DG] gi|257418698|ref|ZP_05595692.1| 50S ribosomal protein L4 [Enterococcus faecalis T11] gi|257421501|ref|ZP_05598491.1| 50S ribosomal protein L4 [Enterococcus faecalis X98] gi|293382757|ref|ZP_06628682.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712] gi|293388060|ref|ZP_06632588.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613] gi|294781052|ref|ZP_06746403.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis PC1.1] gi|300861819|ref|ZP_07107899.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11] gi|307269088|ref|ZP_07550449.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4248] gi|307274172|ref|ZP_07555380.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0855] gi|307276397|ref|ZP_07557520.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2134] gi|307278607|ref|ZP_07559677.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0860] gi|307287013|ref|ZP_07567088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0109] gi|307291646|ref|ZP_07571521.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0411] gi|312901121|ref|ZP_07760409.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0470] gi|312904683|ref|ZP_07763838.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0635] gi|312908652|ref|ZP_07767594.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 512] gi|312909200|ref|ZP_07768057.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 516] gi|312952608|ref|ZP_07771472.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0102] gi|227072541|gb|EEI10504.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] gi|227175021|gb|EEI55993.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22] gi|229304271|gb|EEN70267.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200] gi|229307891|gb|EEN73878.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322] gi|255962728|gb|EET95204.1| 50S ribosomal protein L4 [Enterococcus faecalis T1] gi|255967582|gb|EET98204.1| 50S ribosomal protein L4 [Enterococcus faecalis T2] gi|256709677|gb|EEU24724.1| ribosomal protein L4 [Enterococcus faecalis T8] gi|256947357|gb|EEU63989.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5] gi|256951164|gb|EEU67796.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96] gi|256954629|gb|EEU71261.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704] gi|256986561|gb|EEU73863.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1] gi|256989528|gb|EEU76830.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol] gi|256992176|gb|EEU79478.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1] gi|256996003|gb|EEU83305.1| 50S ribosomal protein L4 [Enterococcus faecalis D6] gi|256997462|gb|EEU83982.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188] gi|257159405|gb|EEU89365.1| 50S ribosomal protein L4 [Enterococcus faecalis ARO1/DG] gi|257160526|gb|EEU90486.1| 50S ribosomal protein L4 [Enterococcus faecalis T11] gi|257163325|gb|EEU93285.1| 50S ribosomal protein L4 [Enterococcus faecalis X98] gi|291079917|gb|EFE17281.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712] gi|291082511|gb|EFE19474.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613] gi|294451855|gb|EFG20306.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis PC1.1] gi|295112507|emb|CBL31144.1| Ribosomal protein L4 [Enterococcus sp. 7L76] gi|300848344|gb|EFK76101.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11] gi|306497265|gb|EFM66807.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0411] gi|306501959|gb|EFM71248.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0109] gi|306504667|gb|EFM73867.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0860] gi|306506877|gb|EFM76024.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2134] gi|306509134|gb|EFM78196.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0855] gi|306514568|gb|EFM83122.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4248] gi|310625439|gb|EFQ08722.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 512] gi|310629396|gb|EFQ12679.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0102] gi|310632035|gb|EFQ15318.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0635] gi|311290442|gb|EFQ68998.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 516] gi|311291793|gb|EFQ70349.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0470] gi|315026834|gb|EFT38766.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2137] gi|315028874|gb|EFT40806.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4000] gi|315031140|gb|EFT43072.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0017] gi|315036014|gb|EFT47946.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0027] gi|315145337|gb|EFT89353.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2141] gi|315147170|gb|EFT91186.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4244] gi|315151072|gb|EFT95088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0012] gi|315153608|gb|EFT97624.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0031] gi|315156212|gb|EFU00229.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0043] gi|315158643|gb|EFU02660.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0312] gi|315160729|gb|EFU04746.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0645] gi|315165900|gb|EFU09917.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1302] gi|315168101|gb|EFU12118.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1341] gi|315171459|gb|EFU15476.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1342] gi|315172693|gb|EFU16710.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1346] gi|315573515|gb|EFU85706.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0309B] gi|315579327|gb|EFU91518.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0630] gi|315582137|gb|EFU94328.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0309A] gi|323479423|gb|ADX78862.1| 50S ribosomal protein L4 [Enterococcus faecalis 62] gi|327534005|gb|AEA92839.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis OG1RF] Length = 207 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 108/195 (55%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK N+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + +++ + L+ARN+PN++++ ++V D++ Sbjct: 130 SFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSA 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 NKVLATQTALTQIEE 204 >gi|257067059|ref|YP_003153315.1| 50S ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548] gi|256798939|gb|ACV29594.1| ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548] Length = 207 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHSVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D+L + KTK A++ + + D N + RNI +++ Sbjct: 121 GELIVLDDLKLENNKTKEAAAVLNAVEAGKKAYVVTAENDNNVYRSFRNIEGVDVASASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R +KLV++K AI LE+ F Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206 >gi|209156522|pdb|3D5B|F Chain F, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156576|pdb|3D5D|F Chain F, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766799|pdb|3F1F|F Chain F, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766855|pdb|3F1H|F Chain F, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400 Length = 210 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 32 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 92 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 151 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 152 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 >gi|1033073|gb|AAA97862.1| ribosomal protein L4 [Thermus thermophilus] gi|1586538|prf||2204237A ribosomal protein L4 Length = 210 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 32 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 92 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 151 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 152 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 >gi|304315941|ref|YP_003851086.1| ribosomal protein L4/L1e [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777443|gb|ADL68002.1| ribosomal protein L4/L1e [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++GE G + +S+++F ++ ++ V+ +R G +K R EV Sbjct: 1 MPKVAVYNINGEQIGEMELSDNVFGVEVNVPVMHEVVLNYLASQRQGTHSTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + +PKKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+VID++ E KTK + + ++ NALI+ + +N L++RNIPN+ + Sbjct: 121 NEIIVIDDINIDEPKTKKVADMLKKFNVKNALIVI-PEDKKNVVLSSRNIPNVKAVYANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ + +++K A+ +E+ + Sbjct: 180 LNTYDVLKYDRFIITKDAVNKVEEVY 205 >gi|224510784|pdb|3FIN|F Chain F, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 208 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 32 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 92 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 151 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 152 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 >gi|150015044|ref|YP_001307298.1| 50S ribosomal protein L4 [Clostridium beijerinckii NCIMB 8052] gi|189029495|sp|A6LPR2|RL4_CLOB8 RecName: Full=50S ribosomal protein L4 gi|149901509|gb|ABR32342.1| ribosomal protein L4/L1e [Clostridium beijerinckii NCIMB 8052] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G + ++E++FA + + L +V+ KR G +K RSEV Sbjct: 1 MPTVGVFNKEGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L + KTK ++ +AL+ + ALII + ++ +ARNI I+++P Sbjct: 121 NQMIVLDSLNFEAPKTKSMIEMLKALEANKALIITAESNEVVYK-SARNIQGISVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKYEKLIITKDAVSKIEEVY 205 >gi|46199629|ref|YP_005296.1| 50S ribosomal protein L4 [Thermus thermophilus HB27] gi|161986604|ref|YP_144957.2| 50S ribosomal protein L4 [Thermus thermophilus HB8] gi|81567621|sp|Q72I05|RL4_THET2 RecName: Full=50S ribosomal protein L4 gi|149240889|pdb|1VSA|D Chain D, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 gi|160285431|pdb|1VSP|D Chain D, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh gi|300508633|pdb|3MRZ|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). gi|300508688|pdb|3MS1|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3mr8. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). gi|46197255|gb|AAS81669.1| LSU ribosomal protein L1E [Thermus thermophilus HB27] Length = 205 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 27 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 86 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 87 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 146 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 147 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 201 >gi|257866530|ref|ZP_05646183.1| ribosomal protein L4 [Enterococcus casseliflavus EC30] gi|257872955|ref|ZP_05652608.1| ribosomal protein L4 [Enterococcus casseliflavus EC10] gi|257876134|ref|ZP_05655787.1| ribosomal protein L4 [Enterococcus casseliflavus EC20] gi|325567375|ref|ZP_08144042.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755] gi|257800488|gb|EEV29516.1| ribosomal protein L4 [Enterococcus casseliflavus EC30] gi|257807119|gb|EEV35941.1| ribosomal protein L4 [Enterococcus casseliflavus EC10] gi|257810300|gb|EEV39120.1| ribosomal protein L4 [Enterococcus casseliflavus EC20] gi|325158808|gb|EGC70954.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755] Length = 207 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 112/196 (57%), Gaps = 2/196 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGSQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K SN+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVASNNLVAVEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQGINVYDILR 188 KTK L + + +++ + + +F L+ARN+P ++++ I+V DI+ Sbjct: 130 SFDAPKTKEFKQVLANLTIDSKVLVV-LESENDFAALSARNLPKVSVVTADNISVLDIVS 188 Query: 189 CSKLVLSKSAIEALED 204 K++++++A+ +E+ Sbjct: 189 NDKMLVTQTALTQIEE 204 >gi|226356896|ref|YP_002786636.1| 50S ribosomal protein L4 [Deinococcus deserti VCD115] gi|259491551|sp|C1CXG5|RL4_DEIDV RecName: Full=50S ribosomal protein L4 gi|226318886|gb|ACO46882.1| putative 50S ribosomal protein L4 [Deinococcus deserti VCD115] Length = 201 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 5/178 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL V+ WQ +R G + +K R++V+ +G KMY QKGTG ARH + V F GGG AFG Sbjct: 26 ILHDVVTWQLASRRRGTASTKTRAQVSKSGKKMYSQKGTGNARHGDRGVPTFVGGGVAFG 85 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF--RALDLS 149 P P + LP+KVR L L AL+D+ ++ +D + KTK V+ LD S Sbjct: 86 PKPRSYGYTLPRKVRQLGLAMALADRQDGGKLIAVDGF-DLDGKTKSFVSWAAQNGLDGS 144 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++I D + +ARN+ +LPV G+N YDILR +LV+ A+E ++ + Sbjct: 145 ERVLI--VTDDAQTRQSARNVAWATVLPVAGLNAYDILRHDRLVIDAVALEPAQEEVE 200 >gi|118444236|ref|YP_877199.1| 50S ribosomal protein L4 [Clostridium novyi NT] gi|166234658|sp|A0PXU7|RL4_CLONN RecName: Full=50S ribosomal protein L4 gi|118134692|gb|ABK61736.1| ribosomal protein L4/L1 family [Clostridium novyi NT] Length = 206 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N++G+ G + ++E +FA++ + +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 NELVVLESLELDAPKTKEMVKMINAFEGKKPLIV-VPESNEVIYKSVRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205 >gi|283853154|ref|ZP_06370407.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B] gi|283571412|gb|EFC19419.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B] Length = 210 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + ++ G + + ++F ++ Q +L V+R Q KR G K R+ V+ Sbjct: 1 MANIKLYDQGNQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D L E KTK +V L ALI+ D N +L+ARNIP I ++ Sbjct: 121 ASLVLVDTLAVPEVKTKLMVKVTSDFGLKKALIVLPAS-DNNLELSARNIPGIKVVREDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LV+ K A +++R Sbjct: 180 LNVYDILRHDHLVMVKDAALKVQERL 205 >gi|322812576|pdb|3PYO|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. gi|322812629|pdb|3PYR|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|322812682|pdb|3PYT|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. gi|322812735|pdb|3PYV|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome Length = 202 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 27 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 86 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ KTK + + L + Sbjct: 87 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGS 146 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 147 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 201 >gi|315640160|ref|ZP_07895282.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952] gi|315484137|gb|EFU74611.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952] Length = 207 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 110/195 (56%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGSQNGEITLNEEIFGIEPNESVVFDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K SN+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVASNNLVAVEAL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + +++ + + L+ARN+PN++++ ++V D++ Sbjct: 130 SFDAPKTKEFKQVLANLSIDAKVLVVLEEGNDFVALSARNLPNVSVVSADNVSVLDVVSN 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 NKVLATQTALTQIEE 204 >gi|39938687|ref|NP_950453.1| 50S ribosomal protein L4 [Onion yellows phytoplasma OY-M] gi|46577157|sp|P61067|RL4_ONYPE RecName: Full=50S ribosomal protein L4 gi|39721796|dbj|BAD04286.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M] Length = 207 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 112/207 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G+ ++ +F +KP Q +L V+ Q R G +K R+ VA Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KVRSLAL+ ALS + + Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+DN+ KTK + L++++ +I Q+ LA+RN+ I L Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C +LVL+ +A+ E+ K Sbjct: 181 ASVYQILNCKQLVLTAAAVNYFEEVLK 207 >gi|291547983|emb|CBL21091.1| LSU ribosomal protein L4P [Ruminococcus sp. SR1/5] Length = 206 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L AL+I D+N L+ARNI ++ Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVLTNLKAEKALVITADN-DQNVVLSARNIADVETATPAT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+++ + +V++K A+ ++E+ + Sbjct: 180 INTYDVMKHNTVVVTKDAVASIEEVY 205 >gi|300814627|ref|ZP_07094878.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511246|gb|EFK38495.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 207 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G I V+++IF + ++ V++ +R G +K RSEV Sbjct: 1 MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG F P + PKKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L E KTK +V + + +I + N ++RNI + V+ Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSSRNIEGVKTEFVKN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + LV++K A++ LE+ F Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206 >gi|227871801|ref|ZP_03990205.1| ribosomal protein L4 [Oribacterium sinus F0268] gi|227842364|gb|EEJ52590.1| ribosomal protein L4 [Oribacterium sinus F0268] Length = 206 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N+ G++ G + +++ IFA + +L + Q KR G K+ R+EV+ Sbjct: 1 MANVSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P + KK + AL+ ALS+ Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTGMNKKEKRAALKSALSNAVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + E KTK + A ++ A ++ Q D+N L+ARNI N+ V Sbjct: 121 NKLIVLDEIRFDEIKTKNFQSMLDAFKVNKAFVLLD-QNDQNTVLSARNIQNVKTAQVNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ ++ +K+A+ LE+ + Sbjct: 180 LNVYDVLKYGTVLATKAALLKLEEVY 205 >gi|255659504|ref|ZP_05404913.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM 20544] gi|260848056|gb|EEX68063.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM 20544] Length = 207 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G I +++ IF ++ G+L + + Q +R+G +K R V Sbjct: 1 MATVAVYDITNNQVGDIELNDSIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRGFVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P ++P+K R LAL+ ALSDK S Sbjct: 61 GRKPWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLALKCALSDKVKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 D++V+++L KTK +V + S AL I + + N + +ARNIP + Sbjct: 121 GDLIVLESLDFDAPKTKQVVKMLGDFGVDSKALFITADEAE-NVEKSARNIPGAKAIQAL 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL KL ++K AI +E+ F Sbjct: 180 GLNVYDILHHDKLFITKDAITRIEEVF 206 >gi|291533620|emb|CBL06733.1| LSU ribosomal protein L4P [Megamonas hypermegale ART12/1] Length = 207 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V + G+ G I ++E +F ++ +G++ + + Q +R+G +K R V Sbjct: 1 MPKVAVYTVAGQQIGDIELNESVFGVEVNEGLVHQAVVMQLAAQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LA++ AL+DK + Sbjct: 61 GRKPWKQKGTGRARSGSTRSPLWVGGGTVFGPSPRSYAFRMPRKQRRLAIKCALTDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK +V +++ +I + N + ++RNIP + + G Sbjct: 121 GDFIVLESLDFAAPKTKEVVKMMSDFNVAEKALIVTADVVENVEKSSRNIPGVKAISSCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDIL +KL ++K AI +E+ Sbjct: 181 LNVYDILNHNKLFITKDAITRIEE 204 >gi|268609592|ref|ZP_06143319.1| 50S ribosomal protein L4 [Ruminococcus flavefaciens FD-1] Length = 207 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL-ARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +SV ++ G+ +++++F + P +G++ A V+ + + +R G + R+EV+ Sbjct: 1 MSTISVFDMTGKQVSETELNDEVFGITPNEGVMHAAVVNYLA-NQRQGTQSTLTRTEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P +AL KKV+ LA++ ALS K Sbjct: 60 GGRKPWRQKGTGHARQGSTRAPQWVHGGIALGPKPRDYRYALNKKVKRLAMKSALSTKVI 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D L + KTK +V +AL + +I + D +A NIP + V Sbjct: 120 DNNMIVLDALTLESYKTKPVVEMLKALGVEGKALIVTAEADAKVIKSAANIPGVKTAAVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++ K+A+ +E+ + Sbjct: 180 TLNVYDILNYDKFIVVKNAVGKIEEVY 206 >gi|160881784|ref|YP_001560752.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg] gi|189029497|sp|A9KJJ3|RL4_CLOPH RecName: Full=50S ribosomal protein L4 gi|160430450|gb|ABX44013.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg] Length = 206 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G++ G + +++ IF ++ + ++ + Q KR G +K R+EV+ Sbjct: 1 MANVKVYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P + +K +SLA++ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ E KTK L ++ AL++ + D N L+ARNIP + Sbjct: 121 QKLIVLDSMNMDEIKTKKFKAVLENLKVNKALVVLDKK-DENVILSARNIPTVRTATSNA 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDI++ LV++K A+ +E+ + Sbjct: 180 INVYDIVKYDTLVITKDAVAQIEEVY 205 >gi|73748317|ref|YP_307556.1| 50S ribosomal protein L4 [Dehalococcoides sp. CBDB1] gi|147669097|ref|YP_001213915.1| 50S ribosomal protein L4 [Dehalococcoides sp. BAV1] gi|289432365|ref|YP_003462238.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT] gi|109893591|sp|Q3ZZM3|RL4_DEHSC RecName: Full=50S ribosomal protein L4 gi|189029500|sp|A5FRZ0|RL4_DEHSB RecName: Full=50S ribosomal protein L4 gi|73660033|emb|CAI82640.1| ribosomal protein L4 [Dehalococcoides sp. CBDB1] gi|146270045|gb|ABQ17037.1| LSU ribosomal protein L4P [Dehalococcoides sp. BAV1] gi|288946085|gb|ADC73782.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT] Length = 210 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 107/203 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE I++SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIVKNINISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ VID L E KT+ + AL + + +I D NF +ARNIP + P + Sbjct: 121 ELKVIDQLSFDEPKTRDMAKILTALQVISPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+L+ +LV+++ A+ +E+ Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203 >gi|253581391|ref|ZP_04858617.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725] gi|251836755|gb|EES65289.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725] Length = 210 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGC--QLDRNFQLAARNIPNINLL 176 DI+V+D + KTK ++ A++ + +++ Q D N L+ RN+ N +L Sbjct: 121 GDILVLDGTIDT-PKTKTIIALTNAINATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEE 207 >gi|255994808|ref|ZP_05427943.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC 49989] gi|255993521|gb|EEU03610.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC 49989] Length = 207 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+++ ++G+D G + +S+ +F + P + + V++ R G +K R +V Sbjct: 1 MSEVNMMTIEGKDAGKLKLSDAVFGITPNENAVREVIKNFLANNRQGTQSAKTRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG AF P P + LPKKV+ LA+ ALS K + Sbjct: 61 GRKPFRQKGTGRARQGSTTDPTKVGGGVAFAPKPRSYSYTLPKKVKKLAMISALSSKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L + +TK +V + + + +I D +A NIPN+ V Sbjct: 121 KELIVLDKLEIADYRTKDVVEMLKNVKAAKKALIVTADKDEKVVKSAANIPNVETTNVSR 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY+I+ + + +K+AIE +E+ + Sbjct: 181 MNVYEIVNHTNFIATKAAIEKIEEVY 206 >gi|307694151|ref|ZP_07636388.1| 50S ribosomal protein L4 [Ruminococcaceae bacterium D16] Length = 206 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N+ G+ G I +SE +F ++P Q ++ V++ R G + R+EV+ Sbjct: 1 MAKANVFNMAGQQVGEIELSEAVFGIEPNQAVVHEVVKNHLANCRQGTQSALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P + L KKV+ LAL+ ALS K S Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRDYSYTLNKKVKRLALKSALSAKAAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L KTK + A++ +++I +++ +ARNIP + + Sbjct: 121 GDILVVDELKLDAIKTKDMRNFLNAVEAGKSVVIT-PEVNEIVVKSARNIPGVVTTTAKI 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDI+ +LV+ K+A+ +E+ F Sbjct: 180 LSVYDIVNAKRLVIDKAALAIIEEVF 205 >gi|302388713|ref|YP_003824534.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646] gi|302199341|gb|ADL06911.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646] Length = 208 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 121/208 (58%), Gaps = 4/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +S+ +F ++ + ++ +V+ +R+G + +K R+EV Sbjct: 1 MPKVALYNMQGQQVGEVELSDSVFGVEVKPEVMHQVVLNYLANQRVGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P + LPKK++ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPKPRSYKYTLPKKLKRLALKSALSAKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+I+V+D L + KTK +V L D + +++D D N +ARNIP + V Sbjct: 121 NEIIVLDRLTMEAPKTKEMVKVLSNLKADTKSLIVLDAS--DVNVVKSARNIPGVTTTTV 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL+++ A++ +E+ + Sbjct: 179 NTLNVYDILNHDKLIMTMDAVKRVEEVY 206 >gi|188584837|ref|YP_001916382.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF] gi|226730697|sp|B2A4E0|RL4_NATTJ RecName: Full=50S ribosomal protein L4 gi|179349524|gb|ACB83794.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF] Length = 207 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I++ + IFA + ++ + KR G + +K RSEV Sbjct: 1 MPKVALYNNEGSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG +F P P + +PKK + A++ AL+ K + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I++++ L + KTK ++ L +++ A+I+ G D N + RNIP ++ Sbjct: 121 GEIVILEELTMEAPKTKKIIEMLENLSINHKAMIVTGAS-DLNVYRSTRNIPGVSSALAN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L LVL+K A+ +E+ F Sbjct: 180 NLNVYDVLNHDYLVLTKDAVSVIEEVF 206 >gi|257470827|ref|ZP_05634917.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] gi|317065031|ref|ZP_07929516.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] gi|313690707|gb|EFS27542.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] Length = 210 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGC--QLDRNFQLAARNIPNINLL 176 DI+V+D + KTK ++ A++ + +++ Q D N L+ RN+ N +L Sbjct: 121 GDILVLDGTIDT-PKTKTIIALTNAVNATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEE 207 >gi|260558288|ref|ZP_05830484.1| ribosomal protein L4 [Enterococcus faecium C68] gi|260075462|gb|EEW63768.1| ribosomal protein L4 [Enterococcus faecium C68] Length = 207 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 110/195 (56%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K N+++ I+ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAENNLVAIEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + + +++ + + L+ARN+PN++++ ++V D++ Sbjct: 130 KFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDNVSVLDVVSN 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 TKVLATQTALTQIEE 204 >gi|291532094|emb|CBK97679.1| LSU ribosomal protein L4P [Eubacterium siraeum 70/3] gi|291558165|emb|CBL35282.1| LSU ribosomal protein L4P [Eubacterium siraeum V10Sc8a] Length = 206 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL-ARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++SV ++ G + ++++IF ++P ++ A V+ + + +R G + R+EV+ Sbjct: 1 MAKISVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLA-NQRQGTQSTLTRTEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LAL+ ALS K Sbjct: 60 GGKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D++ + E KTK +V +AL ALI+ +D +A NIP + Sbjct: 120 DGSMIVVDSITADEFKTKTIVNMLKALSADKALIVLNS-VDEKVIKSAANIPGVKTTQAN 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +K ++ K A+ +E+ + Sbjct: 179 TLNVYDILKYNKFIVVKDAVATIEEVY 205 >gi|237743900|ref|ZP_04574381.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1] gi|256027489|ref|ZP_05441323.1| 50S ribosomal protein L4 [Fusobacterium sp. D11] gi|260495202|ref|ZP_05815330.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33] gi|289765451|ref|ZP_06524829.1| LSU ribosomal protein L1E [Fusobacterium sp. D11] gi|229432931|gb|EEO43143.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1] gi|260197259|gb|EEW94778.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33] gi|289717006|gb|EFD81018.1| LSU ribosomal protein L1E [Fusobacterium sp. D11] Length = 209 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL GE G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +I+V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEE 206 >gi|325104867|ref|YP_004274521.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145] gi|324973715|gb|ADY52699.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145] Length = 209 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPEGIFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKELARKSALSYKAQG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + AL+ SN ++ + + N LA+RN+P ++ Sbjct: 121 NSILVLEDFNFETPKTKNFLNLLSALNSSNEKTLVVLAEGNENVYLASRNLPKAKVVVAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L +KLVL+ +++ LE+ Sbjct: 181 DLNTYDVLDAAKLVLTTGSVKTLEE 205 >gi|227550721|ref|ZP_03980770.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330] gi|257878726|ref|ZP_05658379.1| ribosomal protein L4 [Enterococcus faecium 1,230,933] gi|257881367|ref|ZP_05661020.1| ribosomal protein L4 [Enterococcus faecium 1,231,502] gi|257885635|ref|ZP_05665288.1| ribosomal protein L4 [Enterococcus faecium 1,231,501] gi|257888020|ref|ZP_05667673.1| ribosomal protein L4 [Enterococcus faecium 1,141,733] gi|257890585|ref|ZP_05670238.1| ribosomal protein L4 [Enterococcus faecium 1,231,410] gi|257893175|ref|ZP_05672828.1| ribosomal protein L4 [Enterococcus faecium 1,231,408] gi|257896361|ref|ZP_05676014.1| ribosomal protein L4 [Enterococcus faecium Com12] gi|257899335|ref|ZP_05678988.1| ribosomal protein L4 [Enterococcus faecium Com15] gi|258615210|ref|ZP_05712980.1| 50S ribosomal protein L4 [Enterococcus faecium DO] gi|261206994|ref|ZP_05921683.1| ribosomal protein L4 [Enterococcus faecium TC 6] gi|289565371|ref|ZP_06445821.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF] gi|293379447|ref|ZP_06625591.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1] gi|293553880|ref|ZP_06674486.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039] gi|293562947|ref|ZP_06677414.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162] gi|293567930|ref|ZP_06679271.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071] gi|293570685|ref|ZP_06681735.1| ribosomal protein L4/L1 family [Enterococcus faecium E980] gi|294615392|ref|ZP_06695265.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636] gi|294618319|ref|ZP_06697900.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679] gi|294621079|ref|ZP_06700270.1| ribosomal protein L4/L1 [Enterococcus faecium U0317] gi|314937609|ref|ZP_07844935.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a04] gi|314942892|ref|ZP_07849705.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133C] gi|314947972|ref|ZP_07851376.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0082] gi|314950889|ref|ZP_07853958.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133A] gi|314991463|ref|ZP_07856940.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133B] gi|314995016|ref|ZP_07860136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a01] gi|227180182|gb|EEI61154.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330] gi|257812954|gb|EEV41712.1| ribosomal protein L4 [Enterococcus faecium 1,230,933] gi|257817025|gb|EEV44353.1| ribosomal protein L4 [Enterococcus faecium 1,231,502] gi|257821491|gb|EEV48621.1| ribosomal protein L4 [Enterococcus faecium 1,231,501] gi|257824074|gb|EEV51006.1| ribosomal protein L4 [Enterococcus faecium 1,141,733] gi|257826945|gb|EEV53571.1| ribosomal protein L4 [Enterococcus faecium 1,231,410] gi|257829554|gb|EEV56161.1| ribosomal protein L4 [Enterococcus faecium 1,231,408] gi|257832926|gb|EEV59347.1| ribosomal protein L4 [Enterococcus faecium Com12] gi|257837247|gb|EEV62321.1| ribosomal protein L4 [Enterococcus faecium Com15] gi|260078622|gb|EEW66324.1| ribosomal protein L4 [Enterococcus faecium TC 6] gi|289162861|gb|EFD10711.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF] gi|291291686|gb|ADD91677.1| 50S ribosomal protein L4 [Enterococcus faecium] gi|291589515|gb|EFF21322.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071] gi|291591766|gb|EFF23402.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636] gi|291595413|gb|EFF26725.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679] gi|291599315|gb|EFF30341.1| ribosomal protein L4/L1 [Enterococcus faecium U0317] gi|291601932|gb|EFF32178.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039] gi|291605073|gb|EFF34540.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162] gi|291609157|gb|EFF38429.1| ribosomal protein L4/L1 family [Enterococcus faecium E980] gi|292641970|gb|EFF60136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1] gi|313590742|gb|EFR69587.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a01] gi|313593943|gb|EFR72788.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133B] gi|313596898|gb|EFR75743.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133A] gi|313598364|gb|EFR77209.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133C] gi|313642986|gb|EFS07566.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a04] gi|313645570|gb|EFS10150.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0082] Length = 207 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 110/195 (56%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K N+++ I+ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAENNLVAIEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + + +++ + + L+ARN+PN++++ ++V D++ Sbjct: 130 NFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDNVSVLDVVSN 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 TKVLATQTALTQIEE 204 >gi|46577159|sp|P61069|RL4_SPIKU RecName: Full=50S ribosomal protein L4 gi|34849394|gb|AAP58893.1| ribosomal protein L4 [Spiroplasma kunkelii CR2-3x] Length = 208 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + +G ISV++ I+ ++P Q + + Q R G K+K ++EV+ G Sbjct: 1 MKLQVLDANGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQASMRQGTHKTKTKTEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P + + KKVR LA++ A S K Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKKYLKHVNKKVRKLAIKSAFSLKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +IM+ID + TK +V L ++ LII + NF+ ++RNI +N++ Sbjct: 121 KNIMIIDQFGIDKPSTKAMVKVLNNLKVNGEKLLIITTEGDEVNFK-SSRNIEKVNIITS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GIN+YD+L +KL++++ AI+A+E+ + Sbjct: 180 AGINIYDLLNANKLLVTEQAIKAIEEVY 207 >gi|260589278|ref|ZP_05855191.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583] gi|331082684|ref|ZP_08331807.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540359|gb|EEX20928.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583] gi|330400303|gb|EGG79945.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA] Length = 206 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTMELNDAVFGVEINDHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK R AL+ L+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWAGGGVVFAPTPRDYSLKMNKKERRAALKSVLTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L E KTK + L++S AL++ D N L+ RNIP++ Sbjct: 121 NKLIVLDELKLDEVKTKAMQNVLNNLNVSKALVVLADN-DANVVLSTRNIPDVVTALPNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + ++L+K++ A+E+ + Sbjct: 180 INVYDVLKYNTVILTKASAAAIEEVY 205 >gi|325479201|gb|EGC82298.1| 50S ribosomal protein L4 [Anaerococcus prevotii ACS-065-V-Col13] Length = 207 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHTVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L + KTK +A++ + I + D + RNI +++ Sbjct: 121 NELIVLEDLNLENAKTKEASQVLKAINAGDKAYIVTAENDNEVYRSFRNIEGVDVSAASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ +KLV++K A+ LE+ F Sbjct: 181 INVYDLVKHNKLVITKDAVAKLEEVF 206 >gi|167749438|ref|ZP_02421565.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702] gi|167657610|gb|EDS01740.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702] Length = 206 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL-ARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++SV ++ G + ++++IF ++P ++ A V+ + + +R G + R+EV+ Sbjct: 1 MAKVSVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLA-NQRQGTQSTLTRTEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LAL+ ALS K Sbjct: 60 GGKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D++ + E KTK +V +AL ALI+ +D +A NIP + Sbjct: 120 DGSMIVVDSITADEFKTKTIVNMLKALSADKALIVLNS-VDEKVIKSAANIPGVKTTQAN 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +K ++ K A+ +E+ + Sbjct: 179 TLNVYDILKYNKFIVVKDAVATIEEVY 205 >gi|301772042|ref|XP_002921423.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Ailuropoda melanoleuca] gi|281337408|gb|EFB12992.1| hypothetical protein PANDA_010325 [Ailuropoda melanoleuca] Length = 294 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + ++F++ P+ IL +V+ WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPEVFSIAPRLDILHQVVTWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GR+RH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WPQKGSGRSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQ 179 ++D+L +YL + R+R + L++D D +N AA + NL+P Sbjct: 188 HIVDSLELPTSDPQYLTELARYRRWG-DSVLLVDLAHDDMPQNIVAAASGLKTFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ + LE + Sbjct: 247 GLNVYSMLKHQTLVLTLQTVAFLEQKL 273 >gi|29374852|ref|NP_814005.1| 50S ribosomal protein L4 [Enterococcus faecalis V583] gi|46577230|sp|Q839G3|RL4_ENTFA RecName: Full=50S ribosomal protein L4 gi|29342310|gb|AAO80076.1| ribosomal protein L4 [Enterococcus faecalis V583] Length = 207 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 107/195 (54%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q R G K RS V G K + QKG Sbjct: 10 DGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + PKKVR LA++ LSDK N+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKFPKKVRRLAMKSVLSDKVAENNLVAVEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + +++ + L+ARN+PN++++ ++V D++ Sbjct: 130 SFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSA 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 NKVLATQTALTQIEE 204 >gi|330718971|ref|ZP_08313571.1| 50S ribosomal protein L4 [Leuconostoc fallax KCTC 3537] Length = 207 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 110/203 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +F ++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQATEIELNDAVFGVEPNNAVVTDAVLMQRAALRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + + +K LAL+ ALS K Sbjct: 61 GKKPWKQKGTGRARQGSTRSPQWRGGGVVFGPTPRSYAYRINRKSYQLALKSALSQKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D L + KTK L + + +++ + + N L+ARN+ N+ ++ +G Sbjct: 121 SKLLVVDALSFETPKTKAFGQVLANLSVDSKVLVIVDEDNDNAILSARNLNNVQVMTAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +SAIE ++ Sbjct: 181 INVLDVVNADKLVIVQSAIEEIQ 203 >gi|56417002|ref|YP_154076.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries] gi|222475370|ref|YP_002563787.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida] gi|81599118|sp|Q5PA59|RL4_ANAMM RecName: Full=50S ribosomal protein L4 gi|254803710|sp|B9KJ69|RL4_ANAMF RecName: Full=50S ribosomal protein L4 gi|56388234|gb|AAV86821.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries] gi|222419508|gb|ACM49531.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida] Length = 208 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N+ E G + +S ++F ++ ++ +L V+ WQ ++R G K++ S+V+ T Sbjct: 1 MEVNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K + Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120 Query: 122 DIMVIDN---LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D+ L+ K F A + ++ + A RN+PN++LL Sbjct: 121 KLVVLDDSGLLLEKTADAHVAFGNFGA---HGSYLVVAETYEDKVMCACRNLPNVDLLKY 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINV DILR ++L+ ++ LE R Sbjct: 178 AGINVLDILRHDCVILTVGTVKCLESRL 205 >gi|160902255|ref|YP_001567836.1| 50S ribosomal protein L4 [Petrotoga mobilis SJ95] gi|189029512|sp|A9BHA4|RL4_PETMO RecName: Full=50S ribosomal protein L4 gi|160359899|gb|ABX31513.1| ribosomal protein L4/L1e [Petrotoga mobilis SJ95] Length = 221 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 14/218 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ E G + + ++IF + P +L R + Q KR G + +K RSEV+ Sbjct: 1 MSQIDIYNIQNEKVGTLDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S FR GG FGP P L KK++ LAL+ ALS ++ Sbjct: 61 GRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRE 120 Query: 121 NDIMVIDNLVSKECKT---KYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLL 176 N+++V+D + ++ +T K ++++F D + Q NF+L+ARN+P + ++ Sbjct: 121 NNLIVLDEVKFEKPRTKDVKNILSKFGMEDTKVLFLFPYHQEQYENFKLSARNLPKVKVI 180 Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALED 204 V G+NV+D++ K+VL+K + +E+ Sbjct: 181 IADNPGQNKKNVDGLNVFDLINSEKIVLTKEMVNKIEE 218 >gi|312130548|ref|YP_003997888.1| lsu ribosomal protein l4p [Leadbetterella byssophila DSM 17132] gi|311907094|gb|ADQ17535.1| LSU ribosomal protein L4P [Leadbetterella byssophila DSM 17132] Length = 209 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 6/210 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N G++ G + +SE++F ++P Q ++ ++ +R G KSK R+EVA + Sbjct: 1 MEVKVINKTGQETGKTLKLSEEVFGIEPNQHVVWLDVKHYLAAQRQGTHKSKERAEVARS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G ARH S + GGG+ FGP P L KV+ LA + LS + Sbjct: 61 TKKLLRQKGSGGARHGSAKAPIYVGGGRVFGPRPRNYDFKLNLKVKQLARKSVLSARLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N + V+++ KTK V AL LS +++G + N L+ARNIP ++ Sbjct: 121 NQLKVVEDFGFDTPKTKAYVEFLNALSLSGKKTLFVVNGSE--NNLYLSARNIPKTKVVD 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 V +N YD++ ++L++SAI LE K Sbjct: 179 VNSVNTYDLVNTDTILLAESAISPLETILK 208 >gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius] Length = 302 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 5/201 (2%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D E G++ + DIFA+ + IL V WQ KRI + +K RSEV G K + QKG Sbjct: 82 DSEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRSEVRGGGRKPWKQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S +RGGG + GP P + LP K+R L+ ALS K + + V+D Sbjct: 142 SGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKIRVQGLKIALSSKLAQDYLHVVDT 201 Query: 129 LVSKECKTKYL--VTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQGINVYD 185 L +YL + RFR + LI+D C + N A ++ +N++P G+NV+ Sbjct: 202 LNIPTPDPEYLMDLIRFRYWG-ESVLIVDACEEFPENILQATESLKTVNVIPAIGLNVHS 260 Query: 186 ILRCSKLVLSKSAIEALEDRF 206 +L+ LVL+ A++ LE++ Sbjct: 261 MLKHEVLVLTLEAVKFLENKL 281 >gi|217077284|ref|YP_002335002.1| 50S ribosomal protein L4 [Thermosipho africanus TCF52B] gi|226731434|sp|B7IHU7|RL4_THEAB RecName: Full=50S ribosomal protein L4 gi|217037139|gb|ACJ75661.1| ribosomal protein L4/L1 family [Thermosipho africanus TCF52B] Length = 221 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 120/218 (55%), Gaps = 14/218 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N GE+ G I + +++FA++P ++ R + Q R G + +K R EV+ Sbjct: 1 MAKVSLFNSKGENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS + Sbjct: 61 GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDR--NFQLAARNIPNINLL 176 +++V+D + K KTK L + L L N L++ +++ N +++ RNIP + ++ Sbjct: 121 GNLIVVDEIKFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVI 180 Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALED 204 + G+NVYDIL KLVL + ++ +E+ Sbjct: 181 IADNPGVDRTNIDGLNVYDILNHDKLVLLQGTVQKIEE 218 >gi|313904951|ref|ZP_07838322.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6] gi|313470208|gb|EFR65539.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6] Length = 206 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +S+ +F ++ ++ ++ + + Q R G K+K RSEV Sbjct: 1 MANVSVYNMEGAEVGKMELSDAVFGVEIKENLVHQAVVLQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + +K + AL+ L+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNRKEKQAALKSVLTSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK + AL + AL+I G D N L+ARN+ + + Sbjct: 121 NKFLVLDELKFDAPKTKEMKKVIDALKVEKALVIVGKDSD-NAVLSARNLEGVATASAET 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + ++ +KS++ A+E+ + Sbjct: 180 INVYDLLKYNTVIATKSSVAAIEEVY 205 >gi|19704965|ref|NP_602460.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329219|ref|ZP_06871720.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|46577280|sp|Q8RIF6|RL4_FUSNN RecName: Full=50S ribosomal protein L4 gi|19712867|gb|AAL93759.1| LSU ribosomal protein L1E [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153575|gb|EFG94392.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL GE G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEE 206 >gi|254517471|ref|ZP_05129527.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA] gi|226911220|gb|EEH96421.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA] Length = 206 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G I +++++F ++ + +V+ KR G +K R+EV Sbjct: 1 MPTVGLFNQEGKQVGDIQLNDNVFGVEVNTDAMHQVVVALLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRMSVPKSMRRVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L + KTK +V +A D LII G + + +ARNI ++ ++PV Sbjct: 121 GQMVVLETLAFEAPKTKKMVEVLKAFDAKKTLIITG-ESNEVLYKSARNIADVQIMPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205 >gi|225016284|ref|ZP_03705476.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum DSM 5476] gi|224950959|gb|EEG32168.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum DSM 5476] Length = 207 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N+ G++ I +S+ IF ++P + +L + +R G + R+EV Sbjct: 1 MPNVAVMNMAGKEVSKIDLSDAIFGIEPNKAVLHMAVVNYLANQRQGTQSTLTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LA++ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRSPQWTHGGVALGPKPRDYSYSLNKKVKRLAMKSALSAKAVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D++ E KTK ++ AL +I ++D +A NIP + V Sbjct: 121 NDLIVVDSIALAEYKTKEVIKMLGALGADKKALIVLPEMDAKVIKSAANIPGVRTTQVNE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL++ ++A +E+ + Sbjct: 181 LNVYDILNHDKLIVVEAAAHKIEEVY 206 >gi|187776577|ref|ZP_02993050.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC 15579] gi|187775236|gb|EDU39038.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC 15579] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V A D LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIITNNS-EENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205 >gi|295093644|emb|CBK82735.1| LSU ribosomal protein L4P [Coprococcus sp. ART55/1] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G++ + +++ +F ++ + I+ + + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGKEVETLELNDAVFGVEINEHIMHKAVVGQLANNRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L +E KT L AL++ + + N L+A NIP + Sbjct: 121 NKLVVVDKLDLQEAKTSVFAKILAKLSAPKALVVTKDK-NNNVVLSANNIPTVKTTVANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205 >gi|163815976|ref|ZP_02207346.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759] gi|158448786|gb|EDP25781.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G + + +++ +F ++ + I+ + + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGNEVETLELNDAVFGVEINEHIMHKAVVGQLANSRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L +E KT L AL++ + + N L+A NIP + Sbjct: 121 NKLVVVDKLELQEAKTSVFAKILAKLSAPKALVVTKDK-NNNVVLSANNIPTVKTTVANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205 >gi|170759420|ref|YP_001788820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree] gi|226730645|sp|B1KSM4|RL4_CLOBM RecName: Full=50S ribosomal protein L4 gi|169406409|gb|ACA54820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MAKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + + KTK +V A + LII + N +ARNI + ++PV Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNAFNAKKTLIITN-NAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVIITKDAVSKIEEVY 205 >gi|313680514|ref|YP_004058253.1| LSU ribosomal protein l4p [Oceanithermus profundus DSM 14977] gi|313153229|gb|ADR37080.1| LSU ribosomal protein L4P [Oceanithermus profundus DSM 14977] Length = 208 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 89/160 (55%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ +R G + +K R EV+Y+ K++ QKG GRARH S+ + F GGG FG Sbjct: 28 VLYEVVRWQLASRRRGTASTKTRGEVSYSTRKLFPQKGLGRARHGSRGANIFVGGGVVFG 87 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LP+KVR L AL+D+ +++++ E KTK V L + Sbjct: 88 PRPRDYGYTLPRKVRRAGLAMALADRAREEKLLIVEAFAGVEGKTKQFVEWASKHGLDGS 147 Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D N + AARN+P + L +GINVYDILR + Sbjct: 148 ERVTLVTADENVRRAARNLPWVVTLSPEGINVYDILRTDR 187 >gi|182418832|ref|ZP_02950097.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521] gi|237666492|ref|ZP_04526477.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377329|gb|EDT74890.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521] gi|237657691|gb|EEP55246.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G+ + ++E +FA + Q L +V+ KR G +K RSEV Sbjct: 1 MPTVGVYNIEGKKVSDMELNESVFATEVNQYALHQVVVALLANKRQGTQSTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P + PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSTPKSMRKVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+++L KTK +V AL+ ALII + ++ +ARNI ++++P Sbjct: 121 NSMIVLESLNFDAPKTKNVVAMLNALEAPKALIITAESNEAVYK-SARNIQGVSVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDLLKFDKVIMTKDAVSKIEEVY 205 >gi|159901427|ref|YP_001547674.1| 50S ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779] gi|159894466|gb|ABX07546.1| ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779] Length = 209 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 107/204 (52%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N G+ G + + + IF ++P ++ + + Q R+G +K R EV + Sbjct: 1 MEAKLYNQAGQAIGTLELQDYIFGIEPNIPVMHQAVIRQLANARLGTHSTKTRGEVRGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR + GGG GP P A+P+K+R LA+R ALS K+ N Sbjct: 61 RKLYRQKGTGRARQGAIRAPHHSGGGVVHGPKPRKYTKAMPRKMRRLAVRSALSAKYAEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+ +D+L KTK + + L L L+ G + D N L+A N+PN+ L Sbjct: 121 QIIFLDDLSLNAPKTKDFLALLKNLPLVGDKTLVALGEKSD-NITLSASNLPNVKTLLAA 179 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +NV D+L L+L KSA+ +E Sbjct: 180 YLNVRDLLTYDTLILPKSALSVVE 203 >gi|253681900|ref|ZP_04862697.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873] gi|253561612|gb|EES91064.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873] Length = 206 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + ++E +FA++ +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK ++ +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMAIPKSMKRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++NL + KTK +V A + LI+ + ++ + RNI ++PV Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAESNEVVYK-SIRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205 >gi|315222819|ref|ZP_07864705.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus F0211] gi|315188122|gb|EFU21851.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus F0211] Length = 207 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|116617330|ref|YP_817701.1| 50S ribosomal protein L4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272469|sp|Q03ZP4|RL4_LEUMM RecName: Full=50S ribosomal protein L4 gi|116096177|gb|ABJ61328.1| LSU ribosomal protein L4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 207 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L + KT+ L ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 NKLVVVDALSFEAPKTQDFKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|154483186|ref|ZP_02025634.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC 27560] gi|149735994|gb|EDM51880.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC 27560] Length = 206 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G + G I +S+ +F ++ + ++ + + Q R G K+K RSEV+ Sbjct: 1 MAKVSVLNMEGSEVGTIELSDAVFGVEVNEHLVHQAVLSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + +AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKMNKKEKRIALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KTK L+ AL++ + D N +A+NIP + Sbjct: 121 GKLIVVDELKFEAPKTKEFAKVMANLNTKKALVVLN-ENDANTVKSAKNIPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+ K+A+ +E+ + Sbjct: 180 INVYDILKYDTVVVEKAAVATIEEVY 205 >gi|315925255|ref|ZP_07921469.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621489|gb|EFV01456.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC 23263] Length = 206 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G +S+ +F ++P + ++ +V+ Q KR G +K RSEV Sbjct: 1 MPKIDILDMKGNVVDSAELSDRVFGIEPNEPVVHQVVVAQLANKRQGTKGTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P + KKVR+LA+R S KF Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWIGGGVIFAPKARDFSKKVNKKVRNLAMRSVFSAKFAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D L KTK ++ A+D AL++ ++D N L+ARNIP V Sbjct: 121 KELRVVDALNFDAPKTKDMIAALAAIDAGKALVVTPEKVD-NVYLSARNIPKTRATTVAE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ LVL+K A+ +E+ + Sbjct: 180 LNVYDMLKYDVLVLTKDALAKIEEVY 205 >gi|296111430|ref|YP_003621812.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154] gi|295832962|gb|ADG40843.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154] Length = 207 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 6/206 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNTVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAE 120 Query: 121 NDIMVIDNLVSKECKT---KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++V+D L + KT K ++T A D +++D + + N L+ARN+ N+ ++ Sbjct: 121 GKLVVVDALTFEAPKTQDFKKVLTNL-AADTKTLVVVD--ENNENAILSARNLANVQVMT 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +GINV D++ KLV+ +S+IE ++ Sbjct: 178 TKGINVLDVVNADKLVIVQSSIEEIQ 203 >gi|306825985|ref|ZP_07459321.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431701|gb|EFM34681.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 207 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|238922831|ref|YP_002936344.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656] gi|259491558|sp|C4ZBD5|RL4_EUBR3 RecName: Full=50S ribosomal protein L4 gi|238874503|gb|ACR74210.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656] gi|291523733|emb|CBK89320.1| LSU ribosomal protein L4P [Eubacterium rectale DSM 17629] gi|291528801|emb|CBK94387.1| LSU ribosomal protein L4P [Eubacterium rectale M104/1] Length = 206 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ I +++ IF ++ + ++ + Q KR G K+K RSEV Sbjct: 1 MANVAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK V + L++ AL++ +D +A NIP + Sbjct: 121 NKFVVVDELKLDEIKTKKFVEVLKNLNVEKALVVLN-DMDEKVIASAANIPTVKTTQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L+ +V++K+A+ +E+ + Sbjct: 180 LNVFDVLKYDTVVVTKAAVATIEEVY 205 >gi|290968243|ref|ZP_06559786.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781725|gb|EFD94310.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 207 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S N+ G G I +++ +F ++ + ++ + L Q +R+G +K R V Sbjct: 1 MPKVSTYNITGAKTGEIELNDSVFGVEVNEAVMRQALLRQLANERLGTHSTKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG +GP P +P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARVGSSRSPLWVGGGTVWGPHPRSYAQKMPRKARRLAVKSALSDKVNT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D + KTK +V + + ++ D ARNI + + +G Sbjct: 121 NELFVLDEIKLAAAKTKEVVALIKNFQFTGEKVLFVTDNDEIVIRCARNIEGVKAISTEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N++D+L +KL ++KSA+ +E+ Sbjct: 181 VNIFDLLHYTKLFVTKSAVAKIEE 204 >gi|237742671|ref|ZP_04573152.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13] gi|256846066|ref|ZP_05551524.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2] gi|229430319|gb|EEO40531.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13] gi|256719625|gb|EEU33180.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2] Length = 209 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEE 206 >gi|255526579|ref|ZP_05393486.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7] gi|296187267|ref|ZP_06855663.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans P7] gi|255509687|gb|EET86020.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7] gi|296048138|gb|EFG87576.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans P7] Length = 206 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + +S+++F ++ Q L +V+ KR G +K RSEV+ Sbjct: 1 MPTVGLFNKEGKKVGDVQLSDNVFGVEVNQYALHQVVVALLANKRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGMVFAVKPRDYRTSVPKSMRRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+++L + KTK +V AL+ LI+ + + N +ARNI + +LPV Sbjct: 121 EQIVVLESLELEAPKTKEVVKMLDALNAKKTLIVT-SESNENAYKSARNIQGVEILPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ KLV++K A+ +E+ + Sbjct: 180 LNVYDLLKYEKLVITKDAVSKIEEVY 205 >gi|328945216|gb|EGG39370.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1087] Length = 207 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT V AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFVKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEE 204 >gi|300174030|ref|YP_003773196.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811] gi|299888409|emb|CBL92377.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811] Length = 207 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I + + +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELDDAVFAVEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVTE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L + ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLSNVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KLV+ +S+IE ++ F Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQGGF 206 >gi|283768461|ref|ZP_06341373.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219] gi|283104853|gb|EFC06225.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219] Length = 209 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 6/204 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++ V N + + + +S+ +F+++P QQ + VL +Q+ R G + RS V+ Sbjct: 1 MAKMEVFNQEAKSVKTVEISDAVFSIEPNQQVMFDAVLAYQAGL-RQGTHSTLTRSFVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118 TG K + QKGTGRAR S Q+R G AFGP P GV +KVR LALR ALS+K Sbjct: 60 TGKKPFRQKGTGRARQGSTRAIQWRHGAVAFGPHPRKYGVKT-NRKVRRLALRSALSEKV 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++ ++I+NL +E KTK V +A D ++D + N ++ RN+PN + Sbjct: 119 LESNFVLIENLNFEEMKTKKAVALLKAFGFDRKTLFVVDASEDFVNAYISMRNLPNALVT 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIE 200 V +NVYD++ +K+V ++ A E Sbjct: 179 TVFDLNVYDLVNANKVVFTEKAAE 202 >gi|262066303|ref|ZP_06025915.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum ATCC 33693] gi|294783641|ref|ZP_06748965.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA] gi|291379998|gb|EFE87516.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum ATCC 33693] gi|294480519|gb|EFG28296.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA] Length = 209 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEE 206 >gi|148381420|ref|YP_001255961.1| ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502] gi|153933556|ref|YP_001385795.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397] gi|153934780|ref|YP_001389202.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall] gi|153940969|ref|YP_001392833.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland] gi|168178833|ref|ZP_02613497.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916] gi|226950932|ref|YP_002806023.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto] gi|166234655|sp|A7FZ68|RL4_CLOB1 RecName: Full=50S ribosomal protein L4 gi|166234656|sp|A5I7K5|RL4_CLOBH RecName: Full=50S ribosomal protein L4 gi|166234657|sp|A7GJ73|RL4_CLOBL RecName: Full=50S ribosomal protein L4 gi|254803725|sp|C1FMV0|RL4_CLOBJ RecName: Full=50S ribosomal protein L4 gi|148290904|emb|CAL85040.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502] gi|152929600|gb|ABS35100.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397] gi|152930694|gb|ABS36193.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall] gi|152936865|gb|ABS42363.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland] gi|182670131|gb|EDT82107.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916] gi|226844588|gb|ACO87254.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto] gi|295320813|gb|ADG01191.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613] gi|322807805|emb|CBZ05380.1| LSU ribosomal protein L4p (L1e) [Clostridium botulinum H04402 065] Length = 206 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + + KTK +V + + LII + N +ARNI + ++PV Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNSFNAKKTLIITN-NAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205 >gi|257453270|ref|ZP_05618569.1| 50S ribosomal protein L4 [Fusobacterium sp. 3_1_5R] gi|257467135|ref|ZP_05631446.1| 50S ribosomal protein L4 [Fusobacterium gonidiaformans ATCC 25563] gi|315918266|ref|ZP_07914506.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563] gi|317059804|ref|ZP_07924289.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R] gi|313685480|gb|EFS22315.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R] gi|313692141|gb|EFS28976.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563] Length = 210 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V+E +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176 N I+V++ V + KTK +V +D + L D N L+ARN+ N +L Sbjct: 121 NQIVVLEGAV-EAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEE 207 >gi|319945834|ref|ZP_08020084.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641] gi|319747899|gb|EFW00143.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641] Length = 207 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANITLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|88657712|ref|YP_507228.1| 50S ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas] gi|109893594|sp|Q2GH55|RL4_EHRCR RecName: Full=50S ribosomal protein L4 gi|88599169|gb|ABD44638.1| ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas] Length = 205 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 118/205 (57%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++ N++ + G I ++ IF++ + IL V+ WQ ++R G K+K +++ T Sbjct: 1 MEVNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LIID +++ + RN+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIKNFEHKSFLIIDK-DYNKSVVCSCRNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ A++ LE+R Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204 >gi|307214236|gb|EFN89342.1| 39S ribosomal protein L4, mitochondrial [Harpegnathos saltator] Length = 285 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 8/211 (3%) Query: 3 ELSVRNLDG--EDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + NLD E K G +++ IFA P+ I+ + +RWQ + + + +K R+EV Sbjct: 55 QVWLENLDTIKEKKLGFVTLHPHIFAATPRIDIIHQNVRWQKMYRWVCYAHTKTRTEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S +RGGG+A GP P + LP R L LS K Sbjct: 115 GGRKPWPQKGTGRARHGSIRSPLWRGGGRAHGPRSPTPHFYMLPFFTRVAGLTSMLSVKL 174 Query: 119 CSNDIMVIDNL--VSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINL 175 +D+ +I+NL + EC + R S LI+D + +N LA I +INL Sbjct: 175 AQDDLHIINNLEIPTSECSYIEQLVEERNWGPS-VLIVDSYDIMPKNITLATDEIKHINL 233 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +PV G+NVY +L+ + LVL++ A +E++ Sbjct: 234 MPVYGLNVYSMLKHNTLVLTEQAARLIEEKL 264 >gi|170754589|ref|YP_001783120.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra] gi|226730644|sp|B1IGF3|RL4_CLOBK RecName: Full=50S ribosomal protein L4 gi|169119801|gb|ACA43637.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra] Length = 206 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V + D LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNSFDAKKTLIITN-NAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDLLKYDKVVITKDAVSKIEEVY 205 >gi|257125037|ref|YP_003163151.1| 50S ribosomal protein L4 [Leptotrichia buccalis C-1013-b] gi|257048976|gb|ACV38160.1| ribosomal protein L4/L1e [Leptotrichia buccalis C-1013-b] Length = 214 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 113/211 (53%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ LDG G I V+ D+F ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKISE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-----DGCQLDRNF--QLAARNIPNI 173 +++V+D+ + KTK + +AL+ A + D +DR++ L+ RNI + Sbjct: 121 GNVIVLDDFALEIPKTKTFIDFAKALNFDGAKQLYVTNDDTDNIDRDYFLYLSTRNIEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + + +++Y +++ K++L+K A+ +E+ Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEE 211 >gi|256618379|ref|ZP_05475225.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200] gi|256597906|gb|EEU17082.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200] Length = 207 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 107/195 (54%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G I+++E+IF ++P + ++ + Q G K RS V G K + QKG Sbjct: 10 DGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLGQGTHAVKNRSAVRGGGRKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK N+++ ++ L Sbjct: 70 TGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L + +++ + L+ARN+PN++++ ++V D++ Sbjct: 130 SFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSA 189 Query: 190 SKLVLSKSAIEALED 204 +K++ +++A+ +E+ Sbjct: 190 NKVLATQTALTQIEE 204 >gi|319940059|ref|ZP_08014413.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV] gi|319810773|gb|EFW07100.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV] Length = 207 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +D+L KT AL L +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVDSLSFTAPKTAEFAKVLAALSLDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|257463962|ref|ZP_05628347.1| 50S ribosomal protein L4 [Fusobacterium sp. D12] gi|317061485|ref|ZP_07925970.1| LSU ribosomal protein L1E [Fusobacterium sp. D12] gi|313687161|gb|EFS23996.1| LSU ribosomal protein L1E [Fusobacterium sp. D12] Length = 210 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V+E +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176 N+++V++ + + KTK +V +D + L D N L+ARN+ N +L Sbjct: 121 NEVVVLEGAI-EAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEE 207 >gi|168181865|ref|ZP_02616529.1| 50S ribosomal protein L4 [Clostridium botulinum Bf] gi|237796941|ref|YP_002864493.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657] gi|259491549|sp|C3KVQ0|RL4_CLOB6 RecName: Full=50S ribosomal protein L4 gi|182674730|gb|EDT86691.1| 50S ribosomal protein L4 [Clostridium botulinum Bf] gi|229261648|gb|ACQ52681.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657] Length = 206 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V A + LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFNAKKTLIITN-NAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K+V++K A+ +E+ + Sbjct: 180 INVYDILKYDKVVITKDAVSKIEEVY 205 >gi|296875403|ref|ZP_06899477.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis ATCC 15912] gi|312867055|ref|ZP_07727266.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405] gi|322390661|ref|ZP_08064175.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903] gi|296433596|gb|EFH19369.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis ATCC 15912] gi|311097537|gb|EFQ55770.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405] gi|321142634|gb|EFX38098.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903] Length = 207 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|72163044|ref|YP_290701.1| 50S ribosomal protein L4 [Thermobifida fusca YX] gi|109893650|sp|Q47LJ4|RL4_THEFY RecName: Full=50S ribosomal protein L4 gi|71916776|gb|AAZ56678.1| LSU ribosomal protein L4P [Thermobifida fusca YX] Length = 222 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V++ +G KG + + ++IFA K ++ +V+ Q R G +K R EV Sbjct: 1 MATIEVKDREGAAKGSVELPDEIFAQKVNIPLIHQVVVAQQAAGRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALS++ Sbjct: 61 GKKPYRQKGTGRARQGSVRAPQFTGGGTVHGPKPRDYAQRTPKKMKAAALRGALSNRAQH 120 Query: 121 NDIMVIDNLVSKECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 I V+ V ++ TK T R + S+ +++ + D++ +LA RN+P +++L Sbjct: 121 GRIHVVSEFVPEDVTTKRTQTALKTLRKITDSDKVLVVLSREDQHNRLALRNLPEVHILD 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++ + Sbjct: 181 ANQVNTYDVLYADDIVFTEAGYQEF 205 >gi|157149830|ref|YP_001451234.1| 50S ribosomal protein L4 [Streptococcus gordonii str. Challis substr. CH1] gi|262283582|ref|ZP_06061347.1| ribosomal protein L4/L1 family protein [Streptococcus sp. 2_1_36FAA] gi|189042889|sp|A8AZM4|RL4_STRGC RecName: Full=50S ribosomal protein L4 gi|157074624|gb|ABV09307.1| ribosomal protein L4/L1 family [Streptococcus gordonii str. Challis substr. CH1] gi|262260639|gb|EEY79340.1| ribosomal protein L4/L1 family protein [Streptococcus sp. 2_1_36FAA] Length = 207 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEE 204 >gi|149279663|ref|ZP_01885792.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39] gi|149229699|gb|EDM35089.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39] Length = 209 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKVLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+++ KTK V AL+L+ L++ Q + N L++RNI ++ Sbjct: 121 NNVVVLEDFSFDSIKTKNYVNLVSALNLAGEKTLLVLPSQ-NNNIYLSSRNIQKAKVITA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L C KL+L+ +++ LE+ F Sbjct: 180 DQLNTYDVLNCGKLLLTADSLKTLEEAF 207 >gi|170017942|ref|YP_001728861.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20] gi|226730683|sp|B1MW13|RL4_LEUCK RecName: Full=50S ribosomal protein L4 gi|169804799|gb|ACA83417.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20] Length = 207 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKAYQLALKSVLSQKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D L + KT+ V ++D +++D + + N L+ARN+ N+ ++ Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVD--EDNENAILSARNLTNVQVMTT 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +GINV D++ KLV+ +S+IE ++ Sbjct: 179 KGINVLDVVNADKLVIVQSSIEEIQ 203 >gi|85057801|ref|YP_456717.1| 50S ribosomal protein L4 [Aster yellows witches'-broom phytoplasma AYWB] gi|109893576|sp|Q2NIV5|RL4_AYWBP RecName: Full=50S ribosomal protein L4 gi|84789906|gb|ABC65638.1| LSU ribosomal protein L1E [Aster yellows witches'-broom phytoplasma AYWB] Length = 207 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 110/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G+ ++ +F +KP Q +L V+ Q R G +K R+ VA Sbjct: 1 MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KVR LAL+ ALS + + Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRNYSVKVNQKVRILALKSALSLQVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+DN+ KTK + L++++ +I Q+ LA+RN+ I L Sbjct: 121 NQLVVLDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C +LVL+ A+ E+ K Sbjct: 181 ASVYQILNCKQLVLTADAVNYFEEVLK 207 >gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus] Length = 302 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 14/215 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQG--------ILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAE 127 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115 V+ G K + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ Sbjct: 128 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALT 187 Query: 116 DKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIP 171 K +D+ ++D+L +YL + ++R S+ L++D ++ +N A + Sbjct: 188 VKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLN 246 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 SFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281 >gi|291290889|ref|NP_001167475.1| mitochondrial ribosomal protein L4 [Xenopus laevis] gi|161611723|gb|AAI55897.1| Unknown (protein for MGC:181787) [Xenopus laevis] Length = 298 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 115/205 (56%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+++ D + G++ + D+F + P+ IL +V+ WQ KRI +K K R+EV G K Sbjct: 73 SLKHPDDQQLGLVHLHPDVFTVPPRIDILHQVITWQRNFKRISYAKVKTRAEVRGGGKKP 132 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+GR+R S +RGGG A GP P + +P K+R L L+ AL+ K +D+ Sbjct: 133 RQQKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQDDL 192 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQ-LDRNFQLAARNIPNINLLPVQGI 181 +ID+L +YL+ ++ LI+D + L N A N+ IN++P G+ Sbjct: 193 HIIDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPATGL 252 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ +VL+ +A++ LE++ Sbjct: 253 NVFSMLKHDTVVLTVAAVDFLEEKL 277 >gi|260891593|ref|ZP_05902856.1| hypothetical protein GCWU000323_02808 [Leptotrichia hofstadii F0254] gi|260858701|gb|EEX73201.1| ribosomal protein L4/L1 family protein [Leptotrichia hofstadii F0254] Length = 214 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ LDG G I V+ D+F ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKINE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LII---DGCQLDRNF--QLAARNIPNI 173 +++V+D+ + KTK + +AL+ L I D +DR++ L+ RNI + Sbjct: 121 GNVIVLDDFTLETPKTKTFINFAKALNFDGVKQLYITNDDTDNIDRDYFLYLSTRNIEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + + +++Y +++ K++L+K A+ +E+ Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEE 211 >gi|311748513|ref|ZP_07722298.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1] gi|126577029|gb|EAZ81277.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1] Length = 209 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N GED G +S+SE+IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MELAVINHKGEDTGRKVSLSEEIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TKKIKKQKGTGSARAGSIKSPIFRGGGRVFGPSPRNYSFKLNKKLKQLARKSALSYKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V++NL + KTK + L L++ ++ + ++N L++RN+P ++ V Sbjct: 121 NSLSVLENLSFEAPKTKSYLALLNGLSLADKKTLVVIPEENKNVYLSSRNLPKSKVVTVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L LV+ + ++ LE Sbjct: 181 DVNTYQVLNADHLVICEGSVSMLE 204 >gi|330814198|ref|YP_004358437.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp. IMCC9063] gi|327487293|gb|AEA81698.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp. IMCC9063] Length = 209 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 112/203 (55%), Gaps = 6/203 (2%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKGRSEVAYTGSKMY 65 N++G+ G VS+ +F+LKP++ ++ V+ WQ + RK+ G +KS+G EV + K+ Sbjct: 7 NIEGKKIGTHEVSDQVFSLKPRKDLIQLVINWQLNNQRKKKGHTKSRG--EVKGSRRKIV 64 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+G ARH + + F GGG A GP + L KKV++L L ALS K + +I Sbjct: 65 QQKGSGGARHGNITAPIFVGGGIAHGPRHRGQTRLTKLNKKVKNLGLISALSSKVLTKNI 124 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 + D KTK L+ +ALII F + +NIPN + V G NV Sbjct: 125 NIFDEPKLDTFKTKSFNNFLSKLESKSALIIHHDGASEKFIKSMKNIPNTKRIKVVGTNV 184 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 YD+++ K++ +K AI+ LE+R Sbjct: 185 YDLIKFEKILFTKEAIKTLEERL 207 >gi|227538717|ref|ZP_03968766.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300] gi|300770250|ref|ZP_07080129.1| ribosomal protein L4/L1 family protein [Sphingobacterium spiritivorum ATCC 33861] gi|227241636|gb|EEI91651.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300] gi|300762726|gb|EFK59543.1| ribosomal protein L4/L1 family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 209 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V NL G++ G + + E +F L+P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNLSGKETGAKVQLPESVFGLEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLHKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N+I+V+D + KTK V+ AL++++ L++ D N L++RN+ ++ Sbjct: 121 NNIVVLDAVSFDTIKTKNYVSLVAALNVADEKTLLVLPAY--DNNVYLSSRNLKKAKVVS 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +KL+L+ +++ LE+ F Sbjct: 179 ADQLNTYDVLNATKLLLTTDSVKTLEEAF 207 >gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis] Length = 302 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 3/200 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D E GV + D+FA+ P+ IL V WQ KRI + +K R+EV G K + QKG Sbjct: 82 DSEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRGGGRKPWRQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S +RGGG + GP P + LP KVR L L+ ALS K + + V+++ Sbjct: 142 SGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVLGLKVALSSKLAQSHLHVVES 201 Query: 129 LVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L +YL + R R S L+ + +L + A + +IN++P G+NV+ + Sbjct: 202 LNLPSPDPQYLLDLARRRHWGESLLLVHESEELPEDVLQATATLKSINVIPALGLNVHSL 261 Query: 187 LRCSKLVLSKSAIEALEDRF 206 L+ LVL+ + LED+ Sbjct: 262 LKHQALVLTLETLRFLEDKL 281 >gi|148263141|ref|YP_001229847.1| 50S ribosomal protein L4 [Geobacter uraniireducens Rf4] gi|189029505|sp|A5GAW6|RL4_GEOUR RecName: Full=50S ribosomal protein L4 gi|146396641|gb|ABQ25274.1| LSU ribosomal protein L4P [Geobacter uraniireducens Rf4] Length = 207 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 113/203 (55%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ + G I +S+ +F + ++ ++ ++ Q +R G K RS VA + Sbjct: 1 MAKLDVFDIKNKKVGEIELSDSVFNDEVKEYLIHEAVKIQLANRRAGTVGVKNRSAVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + Q+ GGG AFGP ++ KK R A+R ALS F + Sbjct: 61 GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQAKTYNLSMNKKARRAAMRSALSLLFKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V++N+ TK V L L++ + +RN +L+ARN+ N+ +L +G Sbjct: 121 NKLTVLNNIDLDNVSTKNFVGILNGFTLDKTLVVTDVE-NRNLELSARNVKNVKVLKSEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +N++DI++ ++ +++++ +E Sbjct: 180 LNIFDIMKYQSVIFTENSVRKVE 202 >gi|307709911|ref|ZP_07646358.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564] gi|307711053|ref|ZP_07647475.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321] gi|322388400|ref|ZP_08062003.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779] gi|307617015|gb|EFN96193.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321] gi|307619282|gb|EFN98411.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564] gi|321140713|gb|EFX36215.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779] Length = 207 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|326692236|ref|ZP_08229241.1| 50S ribosomal protein L4 [Leuconostoc argentinum KCTC 3773] Length = 207 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKSYQLALKSVLSQKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L + ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|325689230|gb|EGD31236.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK115] Length = 207 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEE 204 >gi|324990001|gb|EGC21942.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK353] gi|325697977|gb|EGD39860.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK160] Length = 207 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDTVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEE 204 >gi|294784803|ref|ZP_06750091.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27] gi|294486517|gb|EFG33879.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27] Length = 209 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++ +K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVIFTKEALAVVEE 206 >gi|148284213|ref|YP_001248303.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong] gi|189183952|ref|YP_001937737.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda] gi|166234696|sp|A5CCL1|RL4_ORITB RecName: Full=50S ribosomal protein L4 gi|226730701|sp|B3CT06|RL4_ORITI RecName: Full=50S ribosomal protein L4 gi|146739652|emb|CAM79441.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong] gi|189180723|dbj|BAG40503.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda] Length = 210 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 116/208 (55%), Gaps = 3/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL E + + ++ +F LK + I+ V+ WQ ++ G +K S V+ T Sbjct: 1 MKVKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S Q RGGG + GPV +PKK+R AL++ALS K N Sbjct: 61 KKPFKQKGTGNARQGSLRSVQMRGGGISHGPVVRSHEFDVPKKIRKQALKYALSYKLSVN 120 Query: 122 DIMVIDNLVSKECKT---KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D+ KT K L+ ++ + S ID +DRNF LA+RN+ N+N++ Sbjct: 121 KLIVVDDFNIGSNKTAVLKNLLKKYNYSNYSGFFCIDDQNVDRNFFLASRNLFNLNVVAQ 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G N YDI++ ++++ SA ++LE R Sbjct: 181 IGANPYDIMKHDCVMVTLSAAKSLEMRL 208 >gi|154249816|ref|YP_001410641.1| 50S ribosomal protein L4 [Fervidobacterium nodosum Rt17-B1] gi|171769378|sp|A7HM51|RL4_FERNB RecName: Full=50S ribosomal protein L4 gi|154153752|gb|ABS60984.1| ribosomal protein L4/L1e [Fervidobacterium nodosum Rt17-B1] Length = 223 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 121/219 (55%), Gaps = 15/219 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G I +++++F ++P ++ R + Q R G + +K R EVA Sbjct: 1 MAQVTLYNIKGEKIGNIEIADEVFNVEPNLDVMWRYIDMQLTNSRAGTASTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS +F Sbjct: 61 GRKPWPQKHTGRARQGSIRAIHWRHGGVAHGPKPRNYLKRLNKKMKKLALKSALSARFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII----DGCQLDRNFQLAARNIP----- 171 +++V+ ++ ++ +TK + + L +++ ++ ++ N +L+ RNIP Sbjct: 121 GNLIVVSDIRFEKAQTKQMREVLKNLGIADEKVLFVLPRKEEVYENVKLSGRNIPGVKVI 180 Query: 172 ------NINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N N + + G+NVYDI+ SK+VL++ + +E+ Sbjct: 181 IADNPNNGNPVNIDGLNVYDIINSSKVVLTEGTVRKIEE 219 >gi|303246994|ref|ZP_07333270.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ] gi|302491701|gb|EFL51584.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ] Length = 210 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++ G + ++ ++F ++ Q +L V+R Q KR G K RS V+ Sbjct: 1 MANVKVYDQGRQEIGDVELAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRSTVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPIWRGGAIVHGPQPRDYGFKVNRKVRLLALRMALSAKLGD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++++D L E KTK++ L ALI+ D N +L+ARN+P I ++ Sbjct: 121 DSLVLVDALSVPEVKTKHMAKVTSDFGLKKALIVLPAS-DNNLELSARNLPGIKVVREDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LV+ K A +++R Sbjct: 180 LNVYDVLRHDHLVMVKDAALKVQERL 205 >gi|125716986|ref|YP_001034119.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK36] gi|323350941|ref|ZP_08086599.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66] gi|166199916|sp|A3CK64|RL4_STRSV RecName: Full=50S ribosomal protein L4 gi|125496903|gb|ABN43569.1| 50S ribosomal protein L4, putative [Streptococcus sanguinis SK36] gi|322122923|gb|EFX94629.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66] gi|324991816|gb|EGC23741.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK405] gi|324996294|gb|EGC28202.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK678] gi|325686406|gb|EGD28436.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK72] gi|325695809|gb|EGD37706.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK150] gi|327463722|gb|EGF10038.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1057] gi|327467336|gb|EGF12836.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK330] gi|327471741|gb|EGF17182.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK408] gi|327490462|gb|EGF22244.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1058] Length = 207 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEE 204 >gi|15896382|ref|NP_349731.1| 50S ribosomal protein L4 [Clostridium acetobutylicum ATCC 824] gi|46577285|sp|Q97EH9|RL4_CLOAB RecName: Full=50S ribosomal protein L4 gi|15026198|gb|AAK81071.1|AE007808_24 Ribosomal protein L4 [Clostridium acetobutylicum ATCC 824] gi|325510538|gb|ADZ22174.1| 50S ribosomal protein L4 [Clostridium acetobutylicum EA 2018] Length = 206 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G+ I +SE +F K + L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVEVFNKEGKKVEDIELSEKVFGAKISESALHQVVVAQLANKRQGTQSAKTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRISIPKSMRRTAMLSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK +V A + ALI+ + D+N + RNI ++P Sbjct: 121 KEMIVLDELKIDAPKTKEIVKMLNAFEAKKALIV-VAESDQNVYKSVRNIQGAAVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ K +++K A+ +E+ + Sbjct: 180 LNVYDILKYDKFIVTKEAVSKIEEVY 205 >gi|291521897|emb|CBK80190.1| LSU ribosomal protein L4P [Coprococcus catus GD/7] Length = 206 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LSV N++G G I +++ +F ++ + ++ + + Q R G +K RSEV+ Sbjct: 1 MAKLSVYNIEGNQVGEIELNDAVFGVEVNENLMHKAVVAQLAASRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LA++ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSIKLNKKERRLAIKSALTTKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D+ E KTK V L AL++ + D N +A N+P + Sbjct: 121 SKLIVLDSFELDEIKTKKFVAVMNNLKAEKALVVLNEKND-NVIKSANNVPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ LVL++ A+ +++ + Sbjct: 180 INVYDILKYDTLVLTQDAVATIQEVY 205 >gi|303328093|ref|ZP_07358532.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3] gi|302861919|gb|EFL84854.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3] Length = 210 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ D+F ++ + IL V+R Q KR G +K R+ V+ Sbjct: 1 MATVKVYDQNKQESGEMTLASDVFEIEVRPEILNLVVRAQMAAKRAGTHNAKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KVR+LAL+ ALS + Sbjct: 61 GVKPWKQKGTGRARSGSNRSPIWRGGAIIFGPSPRDYGFKVNSKVRALALKMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII---DGCQLDRNFQLAARNIPNINLLP 177 ++V+ + E KTK+ AL L ALI+ D L R+ ARNIP + L Sbjct: 121 ESLLVVKGIELPEAKTKHFAKVAGALGLGKALIVTPEDNEALSRS----ARNIPGLTLTT 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++V D+L+ +LVL + A+E+++ RF Sbjct: 177 PDRLSVLDVLKHKQLVLLEGAVESVQARF 205 >gi|238018624|ref|ZP_04599050.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748] gi|303230124|ref|ZP_07316893.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a] gi|303231196|ref|ZP_07317934.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6] gi|237865095|gb|EEP66385.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748] gi|302514103|gb|EFL56107.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6] gi|302515185|gb|EFL57158.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a] Length = 207 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P A+P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARSGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ V++ + KTK ++ + ++ +A ++ + D N + +ARNI + L +G Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N++D+L KL ++K A+ +E+ Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEE 204 >gi|62296686|sp|P49665|RL4_THETH RecName: Full=50S ribosomal protein L4 gi|12056100|emb|CAC21224.1| ribosomal protein L4 [Thermus thermophilus] Length = 210 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+RWQ ++R G + +K R EVAY+G K++ QK TGRARH F GGG FG Sbjct: 32 LLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P P + LPKKVR L A++D+ +++++ E + + + + L + Sbjct: 92 PKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVERQDQAIPAWAKEAGLDGS 151 Query: 152 ---LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ G +L R AARN+P + L +G+NVYDI+R +LV+ A E ++R Sbjct: 152 ESVLLVTGNELVRR---AARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 >gi|194213187|ref|XP_001493119.2| PREDICTED: similar to Mitochondrial ribosomal protein L4 [Equus caballus] Length = 326 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 100 SLRGYEQERVGLTELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKP 159 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ ALS K +D+ Sbjct: 160 WPQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALSVKLAQDDL 219 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 V+D+L + +YL + R+R S L+ ++ + + A + NL+P G Sbjct: 220 HVVDSLELPSAEPQYLAELARYRRWGDSVLLVDLEHEDMPPSIVAATSCLKTFNLVPAIG 279 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LED+ Sbjct: 280 LNVHSMLKHQTLVLTLRTVAFLEDKL 305 >gi|310659501|ref|YP_003937222.1| 50S ribosomal protein L4 [Clostridium sticklandii DSM 519] gi|308826279|emb|CBH22317.1| 50S ribosomal subunit protein L4 [Clostridium sticklandii] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ + +SE IFA + + + V++ +R G +K R+EV Sbjct: 1 MPKVDVLNINGQKVEELELSESIFAAEISEYAVYEVIKNHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG F P P +++ KKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYSVNKKVRRLALKSVLTTKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + A++ ++ + N + RNIP +++ V Sbjct: 121 GNLIVLDALEMNAPKTKDFIAMLSAVNAGKKALVVTSENSPNVVKSGRNIPGVDITFVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+R L+++K A+ E+ + Sbjct: 181 LNVYDIMRHDSLIITKEAVRKTEEVY 206 >gi|269798549|ref|YP_003312449.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008] gi|282849865|ref|ZP_06259248.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC 17745] gi|294792795|ref|ZP_06757942.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27] gi|294794549|ref|ZP_06759685.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44] gi|313892995|ref|ZP_07826572.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str. F0412] gi|269095178|gb|ACZ25169.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008] gi|282580302|gb|EFB85702.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC 17745] gi|294454879|gb|EFG23252.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44] gi|294456694|gb|EFG25057.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27] gi|313442348|gb|EFR60763.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str. F0412] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 113/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P A+P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARAGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ V++ + KTK ++ + ++ +A ++ + D N + +ARNI + L +G Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N++D+L KL ++K A+ +E+ Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEE 204 >gi|160932200|ref|ZP_02079591.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753] gi|156868802|gb|EDO62174.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G++ G I +S+ +F ++P ++ V+ +R G + RSEV+ Sbjct: 1 MPNVAVFDVTGKEVGKIDLSDAVFGIEPNAVVMHEVVVNYLANQRQGTQSALTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P + + KKVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRSYRYTVNKKVRRLALKSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ KTK + AL +I +D+ +A NIP + V Sbjct: 121 ESLVVLDSMTMDAYKTKTVAAMLNALGAEKKALIVLPSVDQKLIKSANNIPGVKTAQVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL KL++ K A+ +E+ + Sbjct: 181 INVYDILNADKLIVLKDAVAKIEEVY 206 >gi|260787918|ref|XP_002588998.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae] gi|229274171|gb|EEN45009.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae] Length = 264 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 3/202 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 ++ E G++ + D+FA P+ IL R +RWQ ++I ++ R+E+ G K + Q Sbjct: 35 DIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQ 94 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 KGTGRARH S + GGK GP P LP K R+L L+ AL+ K D+ ++ Sbjct: 95 KGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIV 154 Query: 127 DNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D L +YL + R+R S L+ ++ N A+ + IN++P+ G+NVY Sbjct: 155 DTLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEEISENVCEASAQLNTINVMPLVGLNVY 214 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 +L+ LVL+ ++ LE++ Sbjct: 215 SMLKHDTLVLTLPCVQKLENKL 236 >gi|322391200|ref|ZP_08064672.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780] gi|321145953|gb|EFX41342.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|256544507|ref|ZP_05471880.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170] gi|256399832|gb|EEU13436.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + + ++ Q KR G +K R+EV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAAEIAETAVYDTVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMRRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK ++ + + + D + RNI N+ Sbjct: 121 NELIVLDELKLDSYKTKEANEILNNINANKKAYVVIAENDDKVYRSFRNIEGCNVEKANL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR KLV++K AI LE+ F Sbjct: 181 INVYDLLRHDKLVITKDAINKLEEVF 206 >gi|46579715|ref|YP_010523.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough] gi|120602808|ref|YP_967208.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris DP4] gi|81566853|sp|Q72CH9|RL4_DESVH RecName: Full=50S ribosomal protein L4 gi|166234662|sp|A1VEB5|RL4_DESVV RecName: Full=50S ribosomal protein L4 gi|46449130|gb|AAS95782.1| ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough] gi|120563037|gb|ABM28781.1| LSU ribosomal protein L4P [Desulfovibrio vulgaris DP4] gi|311233506|gb|ADP86360.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris RCH1] Length = 206 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G I+++ ++F ++ + IL V+R Q R G +K R+ V+ Sbjct: 1 MAVVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KKVR LALR ALS + Sbjct: 61 GLKPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+ E KTK L L ALII + + L+ RNIP I + + Sbjct: 121 SNLLVVKGFELPEVKTKLFAKIADTLGLDKALII-APEENTTLALSVRNIPGITIATPEQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ +LVL + A+ +++DR K Sbjct: 180 LSVYEILKHKQLVLVEGAVASVQDRLK 206 >gi|82697333|ref|NP_001032527.1| 39S ribosomal protein L4, mitochondrial [Bos taurus] gi|108864722|sp|Q32PI6|RM04_BOVIN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|81294225|gb|AAI08103.1| Mitochondrial ribosomal protein L4 [Bos taurus] gi|296485803|gb|DAA27918.1| 39S ribosomal protein L4, mitochondrial [Bos taurus] Length = 294 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+F+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYLV--TRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL+ R+R S + ++ + +N A + NL+P G Sbjct: 188 HIVDSLELPTTDPQYLMELARYRRWGDSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LE++ Sbjct: 248 LNVHSMLKHQTLVLTLPTVAFLEEKL 273 >gi|39997948|ref|NP_953899.1| 50S ribosomal protein L4 [Geobacter sulfurreducens PCA] gi|46577153|sp|P61063|RL4_GEOSL RecName: Full=50S ribosomal protein L4 gi|39984893|gb|AAR36249.1| ribosomal protein L4 [Geobacter sulfurreducens PCA] gi|298506887|gb|ADI85610.1| ribosomal protein L4 [Geobacter sulfurreducens KN400] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 115/204 (56%), Gaps = 3/204 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++ GV+ +++++F + ++ ++ ++ Q +R G K R+ V+ Sbjct: 1 MATIDVFDISKNKVGVMDLNDNVFNGEVKEYLIHEAIKVQLANRRAGTVSVKNRAIVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG+AR F GGG AFGP P + ++ KK R A+R ALS + Sbjct: 61 GKKPYRQKGTGQARQGCIRAPHFVGGGVAFGPRPKVYNLSMNKKARKAAVRSALSMLYKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V+D+ TK VT +A DL+ L ++D L N +L+ARN+ ++ +L + Sbjct: 121 NKLSVLDSFTLPSISTKGFVTVLKAFDLAKTLVVVDEPNL--NLELSARNVKDVKVLKAE 178 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +NV+DI++ + +++++SA+ +E Sbjct: 179 HLNVFDIVKYNNIIVTQSAVRTIE 202 >gi|126654433|ref|ZP_01726173.1| 50S ribosomal protein L4 [Bacillus sp. B14905] gi|126589120|gb|EAZ83317.1| 50S ribosomal protein L4 [Bacillus sp. B14905] Length = 142 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/137 (44%), Positives = 78/137 (56%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K + +V+D Sbjct: 3 KGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLD 62 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L KTK + L L + LD N L+ARNIP + +L GINV D+L Sbjct: 63 ALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLL 122 Query: 188 RCSKLVLSKSAIEALED 204 K+V +KSA+E +E+ Sbjct: 123 GHEKVVFTKSAVEKVEE 139 >gi|168334351|ref|ZP_02692538.1| ribosomal protein L4/L1e [Epulopiscium sp. 'N.t. morphotype B'] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 111/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G+ G +S+ + IF ++ ++ ++ + + +R G +K R+EV Sbjct: 1 MANVSVLNMEGKQVGEVSLDDGIFGVEIKEHLVHQAVVSYLANQRQGTQCTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKG GRAR S Q+ GGG F P P + +K R AL+ AL+ + Sbjct: 61 GRKPWRQKGGGRARQGSIRSPQWTGGGVVFAPKPRDYSFKVNRKERQQALKCALTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D L E KTK +V AL+L AL++ N ++AA NI + V Sbjct: 121 KKIVVLDELKLTEAKTKSMVKVLDALNLKKALVVTEGDCAMNVKIAAGNIQGVKTSAVNN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD+L+ V++K A+ +E+ +K Sbjct: 181 INVYDVLKYDTFVVTKEALSKIEEVYK 207 >gi|222099968|ref|YP_002534536.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359] gi|254803761|sp|B9K887|RL4_THENN RecName: Full=50S ribosomal protein L4 gi|221572358|gb|ACM23170.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359] Length = 235 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG A GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDR--NFQLAARNIPNINLL 176 N ++V+++L + KTK L + LDL++ ALI+ + + N +L+ +N+PN+ ++ Sbjct: 121 NKLLVLEDLKLERPKTKSLKEILQNLDLADKKALIVLPWKEEGYVNVKLSGKNLPNVKVI 180 Query: 177 ----P-----------VQGINVYDILRCSKLVLSKSAIEALED 204 P + G+NV+D+L+ L+L++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILTRDMVAKIEE 223 >gi|15900146|ref|NP_344750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TIGR4] gi|15902233|ref|NP_357783.1| 50S ribosomal protein L4 [Streptococcus pneumoniae R6] gi|111658800|ref|ZP_01409431.1| hypothetical protein SpneT_02000097 [Streptococcus pneumoniae TIGR4] gi|116515366|ref|YP_815713.1| 50S ribosomal protein L4 [Streptococcus pneumoniae D39] gi|148987946|ref|ZP_01819409.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73] gi|148992786|ref|ZP_01822429.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68] gi|148996631|ref|ZP_01824349.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70] gi|149001685|ref|ZP_01826658.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69] gi|149005959|ref|ZP_01829688.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74] gi|149011078|ref|ZP_01832383.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75] gi|149017898|ref|ZP_01834357.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72] gi|168483846|ref|ZP_02708798.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC1873-00] gi|168489687|ref|ZP_02713886.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195] gi|168492163|ref|ZP_02716306.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC0288-04] gi|168493903|ref|ZP_02718046.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC3059-06] gi|168576363|ref|ZP_02722246.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016] gi|169833141|ref|YP_001693742.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Hungary19A-6] gi|182683189|ref|YP_001834936.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14] gi|225853816|ref|YP_002735328.1| 50S ribosomal protein L4 [Streptococcus pneumoniae JJA] gi|225855975|ref|YP_002737486.1| 50S ribosomal protein L4 [Streptococcus pneumoniae P1031] gi|225858064|ref|YP_002739574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 70585] gi|225860252|ref|YP_002741761.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Taiwan19F-14] gi|237649722|ref|ZP_04523974.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974] gi|298230367|ref|ZP_06964048.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255988|ref|ZP_06979574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502024|ref|YP_003723964.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A] gi|303255094|ref|ZP_07341170.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455] gi|303259262|ref|ZP_07345240.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293] gi|303261017|ref|ZP_07346966.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292] gi|303263345|ref|ZP_07349268.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397] gi|303265510|ref|ZP_07351410.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457] gi|303267932|ref|ZP_07353734.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458] gi|307066887|ref|YP_003875853.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200] gi|307126430|ref|YP_003878461.1| 50S ribosomal protein L4/L1 family [Streptococcus pneumoniae 670-6B] gi|46396654|sp|Q97SV4|RL4_STRPN RecName: Full=50S ribosomal protein L4 gi|46577255|sp|Q8CWV7|RL4_STRR6 RecName: Full=50S ribosomal protein L4 gi|122279401|sp|Q04MN5|RL4_STRP2 RecName: Full=50S ribosomal protein L4 gi|226730731|sp|B1I8J9|RL4_STRPI RecName: Full=50S ribosomal protein L4 gi|226730739|sp|B2IS41|RL4_STRPS RecName: Full=50S ribosomal protein L4 gi|254803755|sp|C1CAL3|RL4_STRP7 RecName: Full=50S ribosomal protein L4 gi|254803758|sp|C1CC07|RL4_STRZJ RecName: Full=50S ribosomal protein L4 gi|254803759|sp|C1CI98|RL4_STRZP RecName: Full=50S ribosomal protein L4 gi|254803760|sp|C1CP89|RL4_STRZT RecName: Full=50S ribosomal protein L4 gi|14971678|gb|AAK74390.1| ribosomal protein L4 [Streptococcus pneumoniae TIGR4] gi|15457733|gb|AAK98993.1| 50S Ribosomal protein L4 [Streptococcus pneumoniae R6] gi|116075942|gb|ABJ53662.1| ribosomal protein L4 [Streptococcus pneumoniae D39] gi|147757206|gb|EDK64245.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70] gi|147760143|gb|EDK67132.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69] gi|147762315|gb|EDK69276.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74] gi|147764714|gb|EDK71644.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75] gi|147926410|gb|EDK77483.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73] gi|147928512|gb|EDK79527.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68] gi|147931462|gb|EDK82440.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72] gi|168995643|gb|ACA36255.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae Hungary19A-6] gi|172042817|gb|EDT50863.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC1873-00] gi|182628523|gb|ACB89471.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14] gi|183571793|gb|EDT92321.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195] gi|183573611|gb|EDT94139.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC0288-04] gi|183576018|gb|EDT96546.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC3059-06] gi|183577871|gb|EDT98399.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016] gi|225720617|gb|ACO16471.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 70585] gi|225723287|gb|ACO19140.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae JJA] gi|225725631|gb|ACO21483.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae P1031] gi|225728067|gb|ACO23918.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae Taiwan19F-14] gi|298237619|gb|ADI68750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A] gi|301793483|emb|CBW35856.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV104] gi|301801154|emb|CBW33827.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV200] gi|302597924|gb|EFL64994.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455] gi|302637854|gb|EFL68340.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292] gi|302639680|gb|EFL70137.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293] gi|302642628|gb|EFL72973.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458] gi|302644950|gb|EFL75197.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457] gi|302647118|gb|EFL77342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397] gi|306408424|gb|ADM83851.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200] gi|306483492|gb|ADM90361.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 670-6B] gi|327390629|gb|EGE88969.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA04375] gi|332075875|gb|EGI86342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17570] gi|332076656|gb|EGI87118.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17545] gi|332077511|gb|EGI87972.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA41301] Length = 207 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +S+ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|302558993|ref|ZP_07311335.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000] gi|302476611|gb|EFL39704.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000] Length = 219 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF + K ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVIEGETPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204 >gi|295838405|ref|ZP_06825338.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74] gi|302519660|ref|ZP_07272002.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78] gi|197695798|gb|EDY42731.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74] gi|302428555|gb|EFL00371.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78] Length = 216 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPRVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|318058127|ref|ZP_07976850.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actG] gi|318076020|ref|ZP_07983352.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actF] Length = 216 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLIAERSDEAAWLSARNLPRVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|322386353|ref|ZP_08059983.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100] gi|321269577|gb|EFX52507.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100] Length = 207 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|307708061|ref|ZP_07644529.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261] gi|307615846|gb|EFN95051.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261] Length = 207 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|289168731|ref|YP_003447000.1| 50S ribosomal protein L4 [Streptococcus mitis B6] gi|288908298|emb|CBJ23140.1| 50S ribosomal protein L4 [Streptococcus mitis B6] Length = 207 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRNYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|110639534|ref|YP_679743.1| 50S ribosomal protein L4 [Cytophaga hutchinsonii ATCC 33406] gi|122966548|sp|Q11QB3|RL4_CYTH3 RecName: Full=50S ribosomal protein L4 gi|110282215|gb|ABG60401.1| LSU ribosomal protein L4P [Cytophaga hutchinsonii ATCC 33406] Length = 208 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ G+D G + +S+DIFA++P + ++ +R G K+K R+EV+++ Sbjct: 1 MELSLLNIKGKDTGKKVVLSDDIFAVEPNNHAIYLDVKQYLAHQRQGTHKAKERAEVSFS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S+ F GGG FGP P + KKV+ LA + A S K Sbjct: 61 TKKLKKQKGTGGARAGSRKSPIFVGGGTIFGPRPRTYGFKVNKKVKDLARKSAFSHKLKE 120 Query: 121 NDIMVIDNLVSKECKTK-YL-VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++ V++N KTK YL + + +LD L + +D+N L++RN+ ++ V Sbjct: 121 SNVTVLENFTLNAPKTKDYLAILKDLSLDTKKTLFVI-ADIDKNIILSSRNLKKAKVVSV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 IN YD++ K+V+S+ ++ +E Sbjct: 180 DQINTYDLVNADKVVISEGSVSKIE 204 >gi|153816251|ref|ZP_01968919.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756] gi|145846434|gb|EDK23352.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756] Length = 206 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 115/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D + E KTK L+++ AL++ DG + N +++ARNI + Sbjct: 121 NKFIVVDEMNFDEIKTKKFQNVLNNLNVNKALVVLEDG---NTNAEISARNIAGVKTART 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVATIEEVY 205 >gi|73986986|ref|XP_854013.1| PREDICTED: similar to mitochondrial ribosomal protein L4 isoform a [Canis familiaris] Length = 294 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + ++F+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GR+RH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WPQKGSGRSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + R+R + L++D + +N A + NL+P Sbjct: 188 HIVDSLELPTSDPQYLTELARYRHWG-DSVLLVDLAYENMPQNIVAATTGLKTFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ + LE++ Sbjct: 247 GLNVYSMLKHQTLVLTLQTLAFLEEKL 273 >gi|66810850|ref|XP_639132.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4] gi|60467762|gb|EAL65778.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4] Length = 258 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 IE+ V N + + + I +S+D+F++ + +L R++R+Q + + G ++ + Sbjct: 49 IEVPVLNFNDKLSPIENIQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMER 108 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 T K QKG+G AR + FRGG + F P H LP+KVR L L+ ALS K Sbjct: 109 TNKKPTRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLA 168 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+D + KTK L+++ D L++D ++ ++ N+ I+ LP Sbjct: 169 QNKLVVVDGFNLESHKTKELLSKLPK-DWGRTLLVD-SEISDFLNKSSLNVQKIDTLPQL 226 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY IL+ LVL+KS++EAL+ R Sbjct: 227 GLNVYTILQNDTLVLTKSSVEALQARL 253 >gi|297159598|gb|ADI09310.1| 50S ribosomal protein L4 [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVIEGEVSTKAAKTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202 >gi|302876533|ref|YP_003845166.1| 50S ribosomal protein L4/L1e [Clostridium cellulovorans 743B] gi|307687206|ref|ZP_07629652.1| 50S ribosomal protein L4 [Clostridium cellulovorans 743B] gi|302579390|gb|ADL53402.1| ribosomal protein L4/L1e [Clostridium cellulovorans 743B] Length = 206 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G++ G I +++++FA K + + +V+ KR G +K R+EV+ Sbjct: 1 MPTVGLFNKEGQNVGDIQLNDNVFAAKISEAAVHQVVVALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ A++ L+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRVSIPKSMKRTAMKSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK V +A ++ AL++ + + N + RN+ + ++PV Sbjct: 121 NELVVLESLAFDAPKTKEAVAMLKAFEVKKALVVV-AESNENVYKSIRNVEGVEVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDLLKYPKVLITKDAVSKIEEVY 205 >gi|212704584|ref|ZP_03312712.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098] gi|212671983|gb|EEB32466.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098] Length = 207 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G +++S D+F ++ + IL V+R Q KR G +K R+ V+ Sbjct: 1 MATVKVYDQNKQECGELTLSADVFEVEARPEILNLVVRAQMAAKRAGTHMAKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KVR+LA++ ALS + + Sbjct: 61 GVKPWKQKGTGRARSGSNRSPVWRGGAIVFGPQPRDYSFKVNSKVRALAMKMALSSRLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ + E KTK+ L L+ ALI+ + +ARNIP I L Sbjct: 121 ENLLVVKGIELPEAKTKHFAKVAGTLGLNKALIVT-AEESEALTRSARNIPGITLTTPDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +ILR +LVL + A+ ++ RF+ Sbjct: 180 LSVLEILRHKQLVLLEGAVAPVQARFE 206 >gi|317153957|ref|YP_004122005.1| 50S ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2] gi|316944208|gb|ADU63259.1| ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2] Length = 206 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V + + + G I ++ ++F ++ Q IL V+R Q KR G +K R + Sbjct: 1 MAKLQVVDQNNQKVGDIELAPEVFEVEIQPEILNLVVRAQRAAKRSGTHATKTRGMKSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KK+R LAL+ ALS + Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWRGGAVLFGPQPRDYSFKVNKKIRKLALQMALSSRVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+ ++ E KTK L L LI+ D N L+ARN+P I ++ Sbjct: 121 DKVTVVKSIDLAEIKTKAFAAVVEKLGLGKTLIVL-KDADLNLALSARNVPGIKVIEADK 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+L +LV+ ++A + +++R K Sbjct: 180 LNVYDVLLYPELVMFEAAAQDVQERLK 206 >gi|293364346|ref|ZP_06611072.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037] gi|307702687|ref|ZP_07639639.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037] gi|307704066|ref|ZP_07640995.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597] gi|291317192|gb|EFE57619.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037] gi|307622356|gb|EFO01364.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597] gi|307623803|gb|EFO02788.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037] Length = 207 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|323700807|ref|ZP_08112719.1| ribosomal protein L4/L1e [Desulfovibrio sp. ND132] gi|323460739|gb|EGB16604.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans ND132] Length = 206 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + + G ++ ++F ++ IL +V+R Q +R G +K R+ A Sbjct: 1 MAKIQVVDQNNTKVGDFELAPEVFEVEIMPEILNQVVRAQRASQRQGTHATKNRALKAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + +RGG AFGP P + KKVR LAL+ ALS + Sbjct: 61 GRKPWRQKGTGRARAGSSNSPLWRGGAAAFGPQPRDYTFKVNKKVRKLALKMALSSRVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ ++ E KTK + L L+ LI+ D ++ARN+P+I ++ Sbjct: 121 AKMTVVSSIDLPEIKTKAFAEVAKNLGLNKTLIV-AKDADPKLTMSARNMPHIKVIEADK 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+L +LV+ +SA + +++R K Sbjct: 180 LNVYDVLLYPELVMLESAAQDVQERLK 206 >gi|115376101|ref|ZP_01463346.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1] gi|310820995|ref|YP_003953353.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1] gi|115366916|gb|EAU65906.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1] gi|309394067|gb|ADO71526.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1] Length = 207 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LDG+ I +S+++F +P + V + Q KR G K S V+ Sbjct: 1 MAKFKVIDLDGKQVSEIELSDEVFGAEPNPHLFYEVAKMQQINKRRGTVGVKNTSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S S + GGGKA P + P+KVR ALR ALS + Sbjct: 61 GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALRAALSQRARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + ++D KTK R L L NAL++D + + + + RN+ ++LP + Sbjct: 121 NALFILDGFKLDAPKTKQAFDVLTRRLKLENALVVDD-KGNNHLHRSVRNLARFDVLPPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 GIN+ +LR +LVL+ +A +A+++ Sbjct: 180 GINLESVLRHKQLVLTSAAAKAIQE 204 >gi|168187813|ref|ZP_02622448.1| ribosomal protein L4/L1 family [Clostridium botulinum C str. Eklund] gi|169294356|gb|EDS76489.1| ribosomal protein L4/L1 family [Clostridium botulinum C str. Eklund] Length = 206 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + +++ +FA++ + +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLADTVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++L KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 KELVVLESLELDAPKTKEMVKMINAFESKKPLIV-VPESNEVIYKSVRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205 >gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis] gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis] Length = 298 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R+ D + G++ + D+F + P+ IL +V+ WQ KRI +K K R+EV G K Sbjct: 73 SLRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKP 132 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+GRAR S +RGGG A GP P + +P K+R L+ AL+ K +D+ Sbjct: 133 RQQKGSGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDL 192 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQ-LDRNFQLAARNIPNINLLPVQGI 181 VID+L +YLV + + LI+D + L N A N+ IN++P G+ Sbjct: 193 HVIDSLEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENLFNATVNLKKINVIPAIGL 252 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +V+ +L+ +VL+ A++ LE++ Sbjct: 253 SVFGMLKHDTVVLTVGAVDFLEEKL 277 >gi|312866536|ref|ZP_07726753.1| 50S ribosomal protein L4 [Streptococcus downei F0415] gi|311097967|gb|EFQ56194.1| 50S ribosomal protein L4 [Streptococcus downei F0415] Length = 207 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + P+KVR LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKFPQKVRRLALKSVLSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ +D L KT +AL + + +++ + + L+ARN+PN+ + + Sbjct: 121 EKLVAVDALSFAAPKTAEFAKVLKALSIDSKVLVVLEEGNEVAALSARNLPNVAVATAKT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIMNADKLLVTKEAISTIEE 204 >gi|298531084|ref|ZP_07018485.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1] gi|298509107|gb|EFI33012.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1] Length = 206 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V + D ++ G I + E++F++ + ++ + +R R G K R+ ++ Sbjct: 1 MLSAKVYSQDNQEVGEIDLQENVFSVSVKPELMHQAVRAHRAAVRSGTVGVKNRALISGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGG GP L KKVR LAL+ ALS K+ Sbjct: 61 GRKPWRQKGTGRARAGTGRSPLWRGGAVIHGPKARDYSIKLNKKVRRLALKMALSTKYAQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++DNL +TK V+ L L LI+ + N +L+ARN+P + ++ Sbjct: 121 DKLQILDNLDLSRIRTKDFVSIKNNLGLKKPLIVT-AEKSNNLELSARNVPGVEVITQDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVY++L+ +LV+ K A+E L++R Sbjct: 180 INVYEVLKHQELVMDKQAVEKLQERL 205 >gi|146317732|ref|YP_001197444.1| 50S ribosomal protein L4 [Streptococcus suis 05ZYH33] gi|146319922|ref|YP_001199633.1| 50S ribosomal protein L4 [Streptococcus suis 98HAH33] gi|253750988|ref|YP_003024129.1| 50S ribosomal protein L4 [Streptococcus suis SC84] gi|253752888|ref|YP_003026028.1| 50S ribosomal protein L4 [Streptococcus suis P1/7] gi|253754713|ref|YP_003027853.1| 50S ribosomal protein L4 [Streptococcus suis BM407] gi|330831921|ref|YP_004400746.1| 50S ribosomal protein L4 [Streptococcus suis ST3] gi|166199915|sp|A4VYP4|RL4_STRS2 RecName: Full=50S ribosomal protein L4 gi|166199917|sp|A4VSF5|RL4_STRSY RecName: Full=50S ribosomal protein L4 gi|145688538|gb|ABP89044.1| Ribosomal protein L4 [Streptococcus suis 05ZYH33] gi|145690728|gb|ABP91233.1| Ribosomal protein L4 [Streptococcus suis 98HAH33] gi|251815277|emb|CAZ50843.1| 50S ribosomal protein L4 [Streptococcus suis SC84] gi|251817177|emb|CAZ54899.1| 50S ribosomal protein L4 [Streptococcus suis BM407] gi|251819133|emb|CAR44224.1| 50S ribosomal protein L4 [Streptococcus suis P1/7] gi|292557532|gb|ADE30533.1| ribosomal protein L4 [Streptococcus suis GZ1] gi|329306144|gb|AEB80560.1| 50S ribosomal protein L4 [Streptococcus suis ST3] Length = 207 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +++L KT AL + + +++ + + L+ARNIP + + Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANADKLLVTQAAISKIEE 204 >gi|148983608|ref|ZP_01816927.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71] gi|194397434|ref|YP_002036911.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54] gi|221231114|ref|YP_002510266.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669] gi|270292001|ref|ZP_06198216.1| ribosomal protein L4 [Streptococcus sp. M143] gi|306828784|ref|ZP_07461976.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC 6249] gi|315612333|ref|ZP_07887246.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis ATCC 49296] gi|322375038|ref|ZP_08049552.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300] gi|322377229|ref|ZP_08051721.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334] gi|331267135|ref|YP_004326765.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5] gi|226730730|sp|B5E6F6|RL4_STRP4 RecName: Full=50S ribosomal protein L4 gi|254803756|sp|B8ZKF8|RL4_STRPJ RecName: Full=50S ribosomal protein L4 gi|74267363|dbj|BAE44179.1| ribosomal protein L4 [Streptococcus pneumoniae] gi|147923755|gb|EDK74867.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71] gi|194357101|gb|ACF55549.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54] gi|220673574|emb|CAR68060.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669] gi|270279529|gb|EFA25371.1| ribosomal protein L4 [Streptococcus sp. M143] gi|301799359|emb|CBW31894.1| 50S ribosomal protein L4 [Streptococcus pneumoniae OXC141] gi|304428962|gb|EFM32050.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC 6249] gi|315315314|gb|EFU63353.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis ATCC 49296] gi|321280538|gb|EFX57577.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300] gi|321281942|gb|EFX58950.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334] gi|326683807|emb|CBZ01425.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5] Length = 207 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 109/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|326799128|ref|YP_004316947.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21] gi|326549892|gb|ADZ78277.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21] Length = 209 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVQVLNISGKETGAKVQLPEAVFGVTPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR S F GGG+ FGP P L KK+++LA + ALS K Sbjct: 61 TRKLHKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N+I+V+D + KTK V L+++N L++ L++N L++RN+ ++ Sbjct: 121 NNIVVLDEVNFDSIKTKNYVKLVNDLNVANEKTLLVLPA--LNKNVYLSSRNLKKTKVIT 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L KL+L+ ++ LE+ F Sbjct: 179 AADINTYDVLNAGKLLLTTETVKTLEEAF 207 >gi|85858147|ref|YP_460349.1| 50S ribosomal protein L4 [Syntrophus aciditrophicus SB] gi|109893644|sp|Q2LQA0|RL4_SYNAS RecName: Full=50S ribosomal protein L4 gi|85721238|gb|ABC76181.1| LSU ribosomal protein L4 [Syntrophus aciditrophicus SB] Length = 217 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 1/191 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I +++ +F + ++ V+R Q +R G + +KGRS+V+ G K + QKGTGRAR Sbjct: 27 IELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSG 86 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG FGPVP + +PKKVR ALR LS K+ ++V+ + E KT Sbjct: 87 TSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDFPLDEIKT 146 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L AL + + + + ++RNI I ++ +G+NVYD+L LV+ + Sbjct: 147 KKFKEVVDRFGLKKALFVT-EERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVIIE 205 Query: 197 SAIEALEDRFK 207 A++ LE K Sbjct: 206 PAVKKLEGALK 216 >gi|237739367|ref|ZP_04569848.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31] gi|229422975|gb|EEO38022.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31] Length = 209 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL+G + V + +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLEGNQIDTLEVKDTVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEE 206 >gi|162449113|ref|YP_001611480.1| hypothetical protein sce0843 [Sorangium cellulosum 'So ce 56'] gi|161159695|emb|CAN91000.1| rplD [Sorangium cellulosum 'So ce 56'] Length = 207 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V NL E G + +S+++F + ++ + V++ Q +R G +K RS VA + Sbjct: 1 MKVTVYNLKREQVGELDLSDEVFGTEVKEHLFYEVVKAQLASRRSGTKATKERSAVAGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S GGG A P + P+KVR AL+ ALS Sbjct: 61 KKLYRQKGTGRARQGSIRAPHHAGGGMAHALEPKDWSYRPPRKVRIGALKSALSLFAKEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L E KTK + L +L++D D+ + + RN+ N LP +G Sbjct: 121 RLIVLDSLEVSEIKTKAIAATLTTLQADRKSLVVDTAGNDKLVK-SLRNLENHQYLPPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NVYD+LR L++S+ A +ALE R Sbjct: 180 VNVYDLLRHDHLIVSRDAAKALEAR 204 >gi|327458432|gb|EGF04788.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1] Length = 207 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++++ I +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAVISKIEE 204 >gi|15674080|ref|NP_268255.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403] gi|281492758|ref|YP_003354738.1| 50S ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis KF147] gi|46577289|sp|Q9CDW3|RL4_LACLA RecName: Full=50S ribosomal protein L4 gi|12725152|gb|AAK06196.1|AE006438_10 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403] gi|281376410|gb|ADA65896.1| LSU ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis KF147] gi|326407631|gb|ADZ64702.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis CV56] Length = 208 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 ++ +D L KT AL + +++ F +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFTAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLANVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEE 205 >gi|322418365|ref|YP_004197588.1| 50S ribosomal protein L4/L1e [Geobacter sp. M18] gi|320124752|gb|ADW12312.1| ribosomal protein L4/L1e [Geobacter sp. M18] Length = 207 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ G I VS+ +F ++ ++ ++ Q +R G K RS VA + Sbjct: 1 MAKLDVFDIKNAKVGEIEVSDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRSAVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR Q+ GGG AFGP P ++ KK R ALR ALS + Sbjct: 61 GKKPFKQKGTGQARQGCSRAPQYPGGGVAFGPQPKTYNLSMNKKARKAALRSALSMLYKK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V++N KTK V A +L L+I + +L+ARN+ ++ +L +G Sbjct: 121 DAITVLNNFELPAVKTKGFVEVLNAFNLDKTLVITDTA-NPTLELSARNVKHVKVLGPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +N++DI++ +V +++A+ +E Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVE 202 >gi|317501775|ref|ZP_07959961.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088704|ref|ZP_08337614.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896808|gb|EFV18893.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330407227|gb|EGG86730.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA] Length = 206 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 115/208 (55%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178 N +V+D + E KTK L+++ AL++ DG + N +++ARNI + Sbjct: 121 NKFIVVDEMNFDEIKTKKFQNVLNNLNVNKALVVLEDG---NINAEISARNIAGVKTART 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 178 NTINVYDILKYNTVIATKAAVATIEEVY 205 >gi|116513053|ref|YP_811960.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris SK11] gi|123125252|sp|Q02W25|RL4_LACLS RecName: Full=50S ribosomal protein L4 gi|116108707|gb|ABJ73847.1| LSU ribosomal protein L4P [Lactococcus lactis subsp. cremoris SK11] Length = 208 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 ++ +D L KT AL + +++ F +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEE 205 >gi|300857245|ref|YP_003782229.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528] gi|300437360|gb|ADK17127.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528] Length = 206 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ +S+ +F ++ + + +V+ KR G +K R+EV+ Sbjct: 1 MPKVGLFNKEGQKVEDFELSDKVFGVEVNENAVHQVVVALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P +L K V+ +A++ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAVKPRDYRISLTKSVKRVAMKSALSSKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++NL + KTK +V A + ALI+ + ++N ++ RNI ++++PV Sbjct: 121 NEMVVLENLELETPKTKEIVKMLDAFNAKKALIVT-AESNKNVYVSGRNIQGVSVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ KL+++K A+ +E+ + Sbjct: 180 LNVYDLLKYEKLIITKDAVSKIEEVY 205 >gi|125625142|ref|YP_001033625.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris MG1363] gi|166234678|sp|A2RNQ4|RL4_LACLM RecName: Full=50S ribosomal protein L4 gi|124493950|emb|CAL98945.1| 50S ribosomal protein L4 (BL4) [Lactococcus lactis subsp. cremoris MG1363] gi|300071950|gb|ADJ61350.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris NZ9000] Length = 208 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVTD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 ++ +D L KT AL + +++ F +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEE 205 >gi|189485086|ref|YP_001956027.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287045|dbj|BAG13566.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 206 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V + GE+KG I + D F K +L V R G K+K R EV+++G Sbjct: 1 METTVYDAKGEEKGKIELP-DFFGKKVSVALLHEVTMAYLNNLRAGTHKTKTRGEVSFSG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTG AR K+ +R GG FGP P + K+ + L+L A S + + Sbjct: 60 AKPWKQKGTGNARAGQKNSPLWRKGGIIFGPQPRNYYTKISKRKKKLSLDMAFSAQLKNG 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+V+D++ E KTK + + L + I+ D +F++AARNI N+ + ++ I Sbjct: 120 NIIVVDSVKVSEVKTKKVAELIKNLKVGGKKIVFAIPSDTDFKVAARNIKNVIVENIKNI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N Y +L KLV++ A++ +++R Sbjct: 180 NAYQVLWADKLVITPEAVDLIKER 203 >gi|262277095|ref|ZP_06054888.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114] gi|262224198|gb|EEY74657.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114] Length = 209 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 6/202 (2%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWR--KRIGCSKSKGRSEVAYTGSKMYV 66 +DG++ G + S+ +F +KP++ I+ +V+ WQ R K+ G +KS+G EV + K+ Sbjct: 8 IDGKNVGSLEASDKVFKVKPRKDIIQQVIDWQQNRMFKKTGHTKSRG--EVKGSRKKIVQ 65 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIM 124 QKG+G ARH + + F GGG A GP V L KKVR L L HALS K S+ I Sbjct: 66 QKGSGGARHGNITAPVFVGGGIAHGPRHRGNYAVKKLNKKVRKLGLVHALSVKAKSDQIA 125 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 + + KTK + + +AL I + F + +NIPN L G NVY Sbjct: 126 IFNEPKISGLKTKNFKDFLKNIKSKSALFIHHKDAPKEFVRSIKNIPNSKKLEDVGTNVY 185 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 D+++ K++ +K + +A+E+R Sbjct: 186 DLIKYEKVLFTKESFKAIEERL 207 >gi|256830537|ref|YP_003159265.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028] gi|256579713|gb|ACU90849.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028] Length = 206 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V + + ++ G IS+++DIF ++ + +L ++ + R G K R V Sbjct: 1 MANAKVYDQNRKEVGEISLADDIFQVEVRPEVLHLAVKSHLAKLRSGTVGVKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R G GP + K++R LAL+ A+S +F S Sbjct: 61 GKKPWRQKGTGRARAGSSRSPLWRSGAVIHGPQARDYSFKINKQIRKLALKMAISSRFTS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++ L E KTK V L L ALI+ + D N L+ARN+P I +L Q Sbjct: 121 ENMLVVNKLQFDEIKTKNFVACKDTLGLKKALIVV-AEKDTNLALSARNVPGILVLDPQS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVY+IL+ ++VL + A+ AL++R K Sbjct: 180 INVYEILKYPQMVLDQGAVLALQERLK 206 >gi|238928154|ref|ZP_04659914.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531] gi|238884114|gb|EEQ47752.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531] Length = 207 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS+S++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNQVGEISLSDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D L KTK V ++ + N + + NIP + + G Sbjct: 121 GDFIVLDQLDFGAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|22536244|ref|NP_687095.1| 50S ribosomal protein L4 [Streptococcus agalactiae 2603V/R] gi|25010134|ref|NP_734529.1| 50S ribosomal protein L4 [Streptococcus agalactiae NEM316] gi|76787912|ref|YP_328785.1| 50S ribosomal protein L4 [Streptococcus agalactiae A909] gi|76798215|ref|ZP_00780465.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21] gi|77406989|ref|ZP_00784004.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B] gi|77412287|ref|ZP_00788603.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111] gi|77414565|ref|ZP_00790708.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515] gi|46577261|sp|Q8E2D0|RL4_STRA5 RecName: Full=50S ribosomal protein L4 gi|46577263|sp|Q8E7T7|RL4_STRA3 RecName: Full=50S ribosomal protein L4 gi|109893642|sp|Q3K3W8|RL4_STRA1 RecName: Full=50S ribosomal protein L4 gi|22533064|gb|AAM98967.1|AE014194_12 ribosomal protein L4 [Streptococcus agalactiae 2603V/R] gi|23094485|emb|CAD45704.1| ribosomal protein L4 [Streptococcus agalactiae NEM316] gi|76562969|gb|ABA45553.1| ribosomal protein L4 [Streptococcus agalactiae A909] gi|76586424|gb|EAO62932.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21] gi|77159363|gb|EAO70531.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515] gi|77161677|gb|EAO72672.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111] gi|77174394|gb|EAO77248.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B] gi|319743994|gb|EFV96374.1| 50S ribosomal protein L4 [Streptococcus agalactiae ATCC 13813] Length = 207 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++NL KT + AL + + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVENLSFAAPKTAEFASVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +V DI+ KL+++K AI +E Sbjct: 181 ASVLDIVNADKLLVTKEAISTIE 203 >gi|297623275|ref|YP_003704709.1| 50S ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093] gi|297164455|gb|ADI14166.1| ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093] Length = 216 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 +P+ +L V+ WQ ++R G + +K R V+ T +KMY QKGTGRARH S F GG Sbjct: 20 EPKVSVLHEVVSWQLSKRRRGTAATKTRGTVSGTTAKMYPQKGTGRARHGSYKAPIFVGG 79 Query: 87 GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTRFRA 145 G AFGP P + LPK+VR L L+ AL+ + N + +++ + K + Sbjct: 80 GIAFGPQPRSYEYTLPKRVRRLGLKMALAARAQDNKLTLVEAFGIGGRTKEFVAWAKDHG 139 Query: 146 LDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 D S L++ +L R AARN+P +++LP +G+NVYDILR +V Sbjct: 140 FDGSERVLLVTDDELARR---AARNLPWVSVLPSRGLNVYDILRHDHVV 185 >gi|325280967|ref|YP_004253509.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712] gi|324312776|gb|ADY33329.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712] Length = 211 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 120/208 (57%), Gaps = 3/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ G++ G V +D IF ++P + + ++ R G KSK R+E++ + Sbjct: 1 MELSVLNIAGQETGRKIVLDDAIFGIQPNEHAIYLDVKQFLANNRQGTHKSKQRNEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S +FRGGG+ FGPVP L KK++ LA + AL+ K + Sbjct: 61 TKKLKKQKGTGGARAGSIKNPEFRGGGRIFGPVPRDYSFKLNKKLKKLARKSALAVKASA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 N + V+++ + KTK +V L ++N L++ G ++ N L+ARN+ N+ ++ V Sbjct: 121 NAVKVVEDFTFEAPKTKQMVALMNNLQVNNGRLLLVLGNGVNENVLLSARNLQNVEVMRV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I Y++++ LVL +S++E L + F Sbjct: 181 SDIATYNVMKAKNLVLVESSVEGLNEMF 208 >gi|242014210|ref|XP_002427784.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus corporis] gi|212512253|gb|EEB15046.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus corporis] Length = 286 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ V N+D + +G++ ++ IF P+ ++ ++WQS R+ +K R+E+ Sbjct: 65 EVWVENVDSIKEQKRGLVQLNPSIFGTIPRLDLIYYNIKWQSLYSRVILYSAKTRAEMKG 124 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 +G K + QKGTGRAR S+ Q +GGG GP P +P + L LS K Sbjct: 125 SGRKPHPQKGTGRARLGSRRAPQVKGGGTCHGPRNPTSYYFRIPLYKKIHGLTSTLSAKL 184 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQ-LDRNFQLAARNIPNINLL 176 ND+ V+DN+ ++Y++ + + S+ LI+D + RN +A +I I L+ Sbjct: 185 AQNDLHVVDNINIPTDDSQYMIDLMKERNWGSSVLIVDSDDIMPRNISIATDSIGYITLM 244 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ LVL+ SA++ LE++ Sbjct: 245 PVYGLNVYGMLKHDTLVLTLSALDELENKL 274 >gi|157108533|ref|XP_001650271.1| 50S ribosomal protein L4 [Aedes aegypti] gi|108884031|gb|EAT48256.1| 50S ribosomal protein L4 [Aedes aegypti] Length = 279 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 107/207 (51%), Gaps = 6/207 (2%) Query: 6 VRNLDGEDK---GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + NLD ++ G+ +S ++F P+ I+ + + WQ + + S SK R+EV G Sbjct: 53 IENLDTIEEQKLGIQQLSSEVFGAAPRIDIVHQNIEWQRKYRFVSFSHSKTRNEVRGGGR 112 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRARH S +RGGG A GP P + LP R L L LS K + Sbjct: 113 KPWPQKGLGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFSRVLGLVSTLSIKLAQD 172 Query: 122 DIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 D+ ++ +L +YL + + RA S I + RN A I +INL+PV Sbjct: 173 DLHIVRDLDIPTEDPQYLRDLVQERAWGPSVLFIDSSDIMPRNISAGADEIDHINLMPVY 232 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+KSA E +E + Sbjct: 233 GLNVYSMLKHDTLVLTKSAAEEIESKL 259 >gi|302336381|ref|YP_003801588.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084] gi|301320221|gb|ADK68708.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084] Length = 208 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N++G+ G + +S+ +F + P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIEVKNVEGKAAGEVELSDSVFGITPNIPVMHQVVVAYEASMRQGTHSTKNRSSVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K Y QKGTGRAR + Q+ GGG FGP P + K + LA+R ALS K Sbjct: 61 GAKPYRQKGTGRARQGTIRAPQWVGGGVVFGPTPRSHAKRVNNKEKKLAMRSALSGKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D L KE KTK V +AL + + I D LA RN+P ++++ Sbjct: 121 SELILVDELYFKEPKTKLAVAALKALGIEGKRVTIVVADDDVITYLAFRNLPKVSIIAAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 N +++ LV+S + + LE+ Sbjct: 181 EANTRNLVDNGALVMSTAVAKQLEE 205 >gi|260807182|ref|XP_002598388.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae] gi|229283660|gb|EEN54400.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae] Length = 264 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 3/202 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 ++ E G++ + D+FA P+ IL R +RWQ ++I ++ R+E+ G K + Q Sbjct: 35 DIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQ 94 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 KGTGRARH S + GGK GP P LP K R+L L+ AL+ K D+ ++ Sbjct: 95 KGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIV 154 Query: 127 DNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D L +YL + R+R S L+ + N A+ + IN++P+ G+NVY Sbjct: 155 DRLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEDIAENVCEASAQLNTINVMPLVGLNVY 214 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 +L+ LVL+ ++ LE++ Sbjct: 215 SMLKHDTLVLTLPCVQKLENKL 236 >gi|154498884|ref|ZP_02037262.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC 29799] gi|150271724|gb|EDM98950.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC 29799] Length = 206 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V ++ G+ G + +S+ IF ++P ++ ++ R G + R+EV+ Sbjct: 1 MPKATVVDMTGKKVGEVDLSDAIFGIEPNVSVVHEAVKNHLANCRQGTQSALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P + L KKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYSYTLNKKVKRLALKSALSAKAAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + A++ A+++ +++ N L+ARNIP + + Sbjct: 121 GNVIVVDGLNLDAVKTKNMAAFLGAVESKKAVLVTN-EVNENVVLSARNIPGVVTTTAKL 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDI+ ++ ++ K+A+ +E+ F Sbjct: 180 LSVYDIVNANQFIVDKAALAVIEEVF 205 >gi|309812335|ref|ZP_07706090.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185] gi|308433640|gb|EFP57517.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185] Length = 214 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + +G+ G + + DIF + ++ +V+ Q R G K+K R EV Sbjct: 1 MTTVDILSPEGKTSGSVELPADIFDVATNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARF 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNAL-IIDGCQLDRNFQLAARNIPNINLLP 177 I V++++V+ E + +F D N L +ID ++D +L+ RN+PN+++L Sbjct: 121 ERIHVLESVVAGEAPSTKAAAKFLGTLSDRKNLLVVID--RMDSVSELSVRNLPNVHVLW 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L + +K+A +A Sbjct: 179 SDQLNTYDVLCADDIAFTKAAFDAF 203 >gi|188995731|ref|YP_001929983.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277] gi|226730705|sp|B2RLZ1|RL4_PORG3 RecName: Full=50S ribosomal protein L4 gi|188595411|dbj|BAG34386.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277] Length = 209 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 118/214 (55%), Gaps = 14/214 (6%) Query: 2 IELSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G V +D IFA++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK+++LA R ALS K + Sbjct: 61 TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYTFKLNKKLKALARRSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N+I+V+++ KTK F+A +S AL +D ++++N L+ARN+PN Sbjct: 121 NEIIVVEDFNFDAPKTK----AFKA--ISAALKVDEKKVLYVLPEVNKNVYLSARNLPNT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 NL+ IN Y +L LVL++ ++ + + FK Sbjct: 175 NLILANLINTYTVLASKNLVLTERSVAVVNELFK 208 >gi|167771266|ref|ZP_02443319.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM 17241] gi|167666517|gb|EDS10647.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM 17241] Length = 207 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQ-GILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++ V ++ G+ I +S+ +F + P + A V+ + + +R G + R+EV+ Sbjct: 1 MPKVQVFDMAGKAVSEIELSDAVFGITPNPVAVHACVVNYLA-NQRQGTQSTLTRTEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+R GG A GP P + L KK++ LA++ SDK Sbjct: 60 GGRKPWRQKGTGHARQGSIRAPQWRKGGIALGPKPRSYRYTLNKKLKRLAIKSVFSDKVA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++V+D++ + KTK +V +AL +I +LD+ +A NIP + V Sbjct: 120 GSNLIVVDSIALEGFKTKAVVEMLKALGADKKALILMPELDQKLVKSAANIPGVKTALVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++ C K ++ K A+ LE+ + Sbjct: 180 TINVYDLVNCDKFIVCKDAVAKLEEVY 206 >gi|325848833|ref|ZP_08170343.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480477|gb|EGC83539.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 207 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + ++ Q KR G +K RSEV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +P+K++ AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPRKMKRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++V+D L KTK ++T +A D ++I + D + RNI N+ Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKA-DKKAYVVI--AENDDKVYRSFRNIEGCNVEK 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR +KLV++K AI LE+ F Sbjct: 178 ANLINVYDLLRHNKLVITKEAIAKLEEVF 206 >gi|313677121|ref|YP_004055117.1| LSU ribosomal protein l4p [Marivirga tractuosa DSM 4126] gi|312943819|gb|ADR23009.1| LSU ribosomal protein L4P [Marivirga tractuosa DSM 4126] Length = 208 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ GED G +S+S+ IF ++P + ++ + R G KSK R+E++ + Sbjct: 1 MELSILKHTGEDTGRKVSLSDAIFDIEPNDHAIYLDVKQKMANARQGTHKSKERAEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L KK++++A + AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPKDYSFKLNKKLKAVARKSALTYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ E KTK L L S ++ ++D+N L+ RNI N + V Sbjct: 121 QMISVLEGFTFNEVKTKNYTDMLNKLSLDSKKTLLVLPEVDKNIVLSGRNIKNTQVTTVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD+L +L+ + ++E +E+ FK Sbjct: 181 SLNTYDVLHADQLLFVEGSLEKIENLFK 208 >gi|312899044|ref|ZP_07758428.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis F0359] gi|310619829|gb|EFQ03405.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis F0359] Length = 207 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S N+ G G + +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVSTYNIAGAQTGEMELNDSVFGVEVNEAVMRQAVLRQLANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARVGSTRSPLWVGGGTVFGPQPRSYEQKMPRKARRLAVKSALSDKVNT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D +V KTK +V S ++ D ARN+ + + + Sbjct: 121 NELFVLDEIVLAAPKTKEVVKVVDNFKFSGEKVLFITDGDEVMARCARNLQGVKSVSTEN 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N++D+L +KL ++KSA+ +E+ Sbjct: 181 MNIFDLLHYTKLFITKSAVAKIEE 204 >gi|323340375|ref|ZP_08080632.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644] gi|323092151|gb|EFZ34766.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644] Length = 207 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 107/195 (54%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG G + +++ +F ++P ++ + Q R G K RS V G K + QKG Sbjct: 10 DGTQNGDVQLNDAVFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGGGKKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S Q+ GGG FGP P + LP+KVR LA++ LS K N ++V+D L Sbjct: 70 TGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIKSVLSQKVLDNSLVVVDAL 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + KTK LD+ + +++ ++ LAARN+ N+ ++P +G+NV D++ Sbjct: 130 TFEAPKTKAFAEVLNNLDVKSKVLVVLEDDNKTAALAARNLANVTVIPAKGLNVLDVVNN 189 Query: 190 SKLVLSKSAIEALED 204 KLV++K A+ +E+ Sbjct: 190 DKLVITKGALSQVEE 204 >gi|292669859|ref|ZP_06603285.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541] gi|292648656|gb|EFF66628.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541] Length = 207 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS++++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNQVGEISLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHSTKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D L KTK V ++ + N + + NIP + + G Sbjct: 121 GDFIVLDQLDFDAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|262038243|ref|ZP_06011633.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264] gi|261747710|gb|EEY35159.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264] Length = 214 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+ LDG G + V E+IF ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNTYKLDGSKAGTVEVKEEIFGIEPNKTVMHEVLVAELAGAREGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LALR AL+ K + Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRDYTKKVNKKVRRLALRSALATKINN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIID--GCQLDR--NFQLAARNIPNI 173 D++V+D+ KTK V +AL+ + I D G +R N + + RN+ + Sbjct: 121 GDLIVLDDFTLDVPKTKTFVQFAKALNFAGEKQLFIADYNGETFNRDINLEYSVRNLEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L + ++++ +++ K+V++K A+ +E+ Sbjct: 181 MTLDSRSLSIFWLIKQDKIVVTKEALATIEE 211 >gi|229825320|ref|ZP_04451389.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC 49176] gi|229790692|gb|EEP26806.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC 49176] Length = 206 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ IFA++ ++ ++ R + Q R G +K R+ V Sbjct: 1 MANISVLNMEGKEVGSLELNDAIFAVEVKEHLMHRAVVLQLANNRQGTQSAKTRAAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+RGGG F P P + +K + A+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRSPQWRGGGVVFAPQPRDYSFKMNRKEKQAAICSALTTKLNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D E KTK + + ALI+ G + + N L+ARN+ ++ Sbjct: 121 NKLIVLDEFKLGEIKTKAAKKVLEDIKANKALIVLG-EKEENVILSARNLESVETTLTNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL LV++K A+ +E+ + Sbjct: 180 INVYDILNHDSLVMTKDAVSKIEEVY 205 >gi|325678593|ref|ZP_08158203.1| 50S ribosomal protein L4 [Ruminococcus albus 8] gi|324109643|gb|EGC03849.1| 50S ribosomal protein L4 [Ruminococcus albus 8] Length = 207 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ G +++ IF ++P + ++ ++ +R G + R+EV Sbjct: 1 MSQIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNYLANQRQGTQSTLTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KK R LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKERRLAMKSALSTKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V++ + +KE KTK +V +A+ +I +D +A NIP + V Sbjct: 121 SNLIVVNEIETKEYKTKVMVDMLKAIGAEGKALIVTADVDAKVVKSAANIPGVKTATVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K V+S A++ +E+ + Sbjct: 181 LNVYDILNYDKFVVSSDAVKKIEEVY 206 >gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus] gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus] Length = 312 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ + + E GV+ + D+F++ + IL V WQ KRI +K K R+EV G K Sbjct: 87 SLGSYESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKSRAEVRGGGGKP 146 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K + + Sbjct: 147 WKQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKIALTAKLAQDYL 206 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIID-GCQLDRNFQLAARNIPNINLLPVQGI 181 VID L YL + ++ LI+D G + N A N+ +N++P G+ Sbjct: 207 HVIDTLEIPTPDPHYLEELLKHRQWGDSVLIVDVGEEFSHNVLQATANLKTVNIIPAIGL 266 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ LVL+ A++ LE + Sbjct: 267 NVHSMLKHESLVLTLEAVKFLEKKL 291 >gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax] Length = 302 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 3/200 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 + E G++ + D+FAL + IL V WQ KRI + +K RSEV G K + QKG Sbjct: 82 ESEPLGLVDLHPDVFALPARIDILHEVELWQRNYKRISHANTKVRSEVRGGGKKPWNQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S +RGGG + GP P + +P KVR L+ ALS K N + V+D+ Sbjct: 142 SGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMIPIKVRVQGLKIALSSKLAQNYLHVVDS 201 Query: 129 LVSKECKTKYLV--TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L +YLV R+R S L+ L N A + +N++P G+NV+ + Sbjct: 202 LNIPTPDPQYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVIPAIGLNVHSM 261 Query: 187 LRCSKLVLSKSAIEALEDRF 206 L+ LVL+ A++ LE++ Sbjct: 262 LKHEVLVLTLEAVKFLENKL 281 >gi|271962633|ref|YP_003336829.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021] gi|270505808|gb|ACZ84086.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021] Length = 215 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++ G G + + DIF K ++ +V+ Q +R G K+K R EV+ Sbjct: 1 MSTIDVLDVSGAKTGTVDLPGDIFDAKVNIPLIHQVVVAQLAARRQGTHKAKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP+P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPLPRDYSQKTPKKMKAAALRGALSDRANG 120 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ LV E KTK + R + + ++++ + D L+ RN P ++LL Sbjct: 121 GRVHVVSALVQGETPKTKAALESLRKITQTRSVLVVVDEGDELTWLSLRNAPEVHLLDAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +V ++ A + + R Sbjct: 181 QLNTYDVLCYDDVVFTQEAYDQVVTRL 207 >gi|229823534|ref|ZP_04449603.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271] gi|229786978|gb|EEP23092.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271] Length = 207 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G I ++ +F ++P + ++ + Q R G K RS V Sbjct: 1 MTKVSLFKQDGSQIGEIELNAAVFGVEPNEDVIFDAVIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALQSVLSQKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D L TK + L D L+++G + F +ARN+ N+ ++ Sbjct: 121 GKLVVVDELSFAAPSTKEFKSVLNNLKVDAKTLLVLEGTNANAYF--SARNLANVKVIDE 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 +NV D++ LV++K+A+ +E+ Sbjct: 179 GNVNVLDVVNYDTLVITKAALSTVEE 204 >gi|212697254|ref|ZP_03305382.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM 7454] gi|212675703|gb|EEB35310.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM 7454] Length = 207 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + ++ Q KR G +K RSEV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK++ AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMKRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++V+D L KTK ++T +A D ++I + D + RNI ++ Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKA-DKKAYVVI--AENDDKVYRSFRNIEGCDVEK 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR +KLV++K AI LE+ F Sbjct: 178 ANLINVYDLLRHNKLVITKEAIAKLEEVF 206 >gi|257790718|ref|YP_003181324.1| 50S ribosomal protein L4/L1e [Eggerthella lenta DSM 2243] gi|317488571|ref|ZP_07947116.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA] gi|325832045|ref|ZP_08165142.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1] gi|257474615|gb|ACV54935.1| ribosomal protein L4/L1e [Eggerthella lenta DSM 2243] gi|316912313|gb|EFV33877.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA] gi|325486366|gb|EGC88818.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1] Length = 207 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 8/208 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKGRSEVA 58 M + +++ G+ G ++ +F ++P ++ +V+R Q SWR+ G +K R +V Sbjct: 1 MTTIEIKDASGKKAGTADLAASVFGIEPNVPVMHQVVRAQRASWRQ--GTHDTKTRGQVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR + Q+ GGG FGP P + K LA+R ALS K Sbjct: 59 GGGKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKL 118 Query: 119 CSNDIMVID--NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++ V+D N K + L+ L+ID D N L+ RNIP +N+L Sbjct: 119 ADGELFVVDAFNFEKPSTKAAVAALKALGLERRTTLVID--DEDVNTYLSFRNIPTVNIL 176 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 PV N Y+++ LV + A++ +E+ Sbjct: 177 PVSAANTYELIDNKALVFTADALKRIEE 204 >gi|312144246|ref|YP_003995692.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus'] gi|311904897|gb|ADQ15338.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus'] Length = 209 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 1/195 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G + ++ +++ +F K + ++ +V+ Q +R G + +K R+ V G K + QKGT Sbjct: 11 GNELDMVDLNDSVFNNKINEHVVHQVVNAQLAARRSGTASTKNRANVRGGGRKPWRQKGT 70 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRARH S + GGG FGP P L KK++ LAL+ L+DK ++++++D + Sbjct: 71 GRARHGSIRSPLWVGGGVTFGPSPRSYDKKLTKKMKRLALKSVLTDKVNRDEVVLVDKIA 130 Query: 131 SKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 E KTK ++ L+L + ++I + D N L+ARNIPN+ L IN YD+L Sbjct: 131 LSEPKTKAVIKILADLNLEDKKVLIVMPEKDDNLYLSARNIPNVKTLLAGSINAYDLLDN 190 Query: 190 SKLVLSKSAIEALED 204 ++ + A++ +E+ Sbjct: 191 EMIIFIEEAVKMIEE 205 >gi|153952862|ref|YP_001393627.1| 50S ribosomal protein L4 [Clostridium kluyveri DSM 555] gi|219853527|ref|YP_002470649.1| hypothetical protein CKR_0184 [Clostridium kluyveri NBRC 12016] gi|189029496|sp|A5N4P8|RL4_CLOK5 RecName: Full=50S ribosomal protein L4 gi|254803727|sp|B9DYB0|RL4_CLOK1 RecName: Full=50S ribosomal protein L4 gi|146345743|gb|EDK32279.1| RplD [Clostridium kluyveri DSM 555] gi|219567251|dbj|BAH05235.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 206 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 N +G+ +S+ +F ++ Q ++ +V+ KR G +K R+EV+ G K + Q Sbjct: 8 NKEGQKITDFELSDKVFGVEVNQYVMHQVVVALLANKRQGTQSAKTRAEVSGGGIKPWRQ 67 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S Q+ GG F P ++PK R LA++ ALS K N I+V++ Sbjct: 68 KGTGRARQGSIRSPQWIHGGVVFAVKPRSYRISVPKSARRLAMKSALSSKVEENQIVVLE 127 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +L KTK +V A + LI+ + ++N +ARNI ++++PV +NVYD+L Sbjct: 128 SLEMDTPKTKEVVKILDAFEAKKTLIVT-AESNQNVYKSARNIQGVSVIPVNNLNVYDLL 186 Query: 188 RCSKLVLSKSAIEALEDRF 206 + KL+++K A+ +E+ + Sbjct: 187 KFDKLIITKDAVSKIEEVY 205 >gi|284049256|ref|YP_003399595.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731] gi|283953477|gb|ADB48280.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731] Length = 209 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 6/208 (2%) Query: 1 MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +++V ++ G+ G I + + +F ++ + ++ + + Q +R G +K R V Sbjct: 1 MPKVAVYDITGKQTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S + GGG FGP P +P+K R LA+R ALS K Sbjct: 61 GGRKPWKQKGTGRARAGSVRSPLWVGGGTVFGPAPRSHAKDMPRKARRLAIRCALSAKVA 120 Query: 120 SNDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++V+DNL KTK ++T F A D +I DG + N + ++RNI + L Sbjct: 121 EGALVVVDNLTFDAPKTKDAVAMLTGFEAADKKALIITDG--ENENVEKSSRNIEKVKAL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 +NVYDIL K++L+K A+ +E+ Sbjct: 179 SNDCLNVYDILNAEKVLLAKDAVARIEE 206 >gi|291460719|ref|ZP_06600109.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416678|gb|EFE90397.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 206 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV ++ G++ G + +++ +FA + +L + Q +R G K+ R+EV+ Sbjct: 1 MAIVSVFDMQGKEVGKMELNDAVFAAPINEHLLHLAVVAQLANRRQGTKKALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + AL+ ALS+ Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYRKDLNKKEKRAALKAALSNAVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ---LAARNIPNINLLP 177 ++V+D++ E KTK AL L A ++ LD+N + L+ARNI ++ Sbjct: 121 QKLVVVDSIHFDEIKTKKFQAMLDALKLKKAFVL----LDQNDEKTILSARNIEDVKTAQ 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V INVYD+++ ++ +K+A+E LE+ + Sbjct: 177 VNEINVYDVMKYGTVLATKAALEKLEEVY 205 >gi|307328031|ref|ZP_07607212.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113] gi|306886336|gb|EFN17341.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDTQVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V + TK T + L++ + D L+ARN+P +++L Sbjct: 121 ERIHVVTGVVDGDISTKAAKTLLGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202 >gi|160894755|ref|ZP_02075530.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50] gi|156863689|gb|EDO57120.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50] Length = 206 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G++ + +++ +F ++ + ++ + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGKEVETLELNDSVFGVEINEHLMHLAVVGQQANSRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSAKLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D + +E KT L +L++ + D+ L+A NIP + Sbjct: 121 DKLVVVDKIELEEVKTSVFAKILANLKAPKSLVVTKDKNDK-VVLSANNIPTVKTTATNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYDKLVLTKDAVAAIEEVY 205 >gi|302871499|ref|YP_003840135.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47] gi|312135495|ref|YP_004002833.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL] gi|302574358|gb|ADL42149.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47] gi|311775546|gb|ADQ05033.1| ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL] Length = 208 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D + KTK ++ + L L N ALI+ + + Q + RNIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVI-PEKNEYLQKSTRNIPEVKTLQV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 180 GNLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|307170893|gb|EFN63004.1| 39S ribosomal protein L4, mitochondrial [Camponotus floridanus] Length = 285 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG-EDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + NLD E+K G+I++ I+A P+ I+ + +RWQ + + + +K R+EV Sbjct: 55 QVWLENLDTVEEKKLGLITLHPHIYAAAPRIDIIHQNVRWQKMYRWVCYAHTKTRAEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S +RGGG A GP P + LP R L LS K Sbjct: 115 GGRKPWPQKGTGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFYTRVAGLTSTLSVKL 174 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ +++ L + Y+ + + L +D + N LA I ++NL+ Sbjct: 175 AQDDLHIVNELEIPTSEPSYIEQLIEKRNWGPSVLFVDSYDIMPTNITLATDEIKHVNLM 234 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ + LVL++ A +E++ Sbjct: 235 PVYGLNVYSMLKHNTLVLTEKAARLIEEKL 264 >gi|319900925|ref|YP_004160653.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108] gi|319415956|gb|ADV43067.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108] Length = 208 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK + + L +S+ L++ + ++N L+ARN+ + N+ V Sbjct: 121 NAIVVVEDFTFATPKTKDFIEMTKNLKVSDKKLLVVLPEANKNVYLSARNVKSANVQAVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++SA+ A+++ Sbjct: 181 GLNTYRVLDAGIIVLAESALSAIDN 205 >gi|260905720|ref|ZP_05914042.1| LSU ribosomal protein L4P [Brevibacterium linens BL2] Length = 217 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 9/197 (4%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G G + + +IF ++ ++ +V+ Q R G K+K RSEV G K Y QKGT Sbjct: 14 GAKTGSVELPAEIFGVQTNVPLIHQVVVAQLAAARQGTHKTKTRSEVRGGGRKPYRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 G AR S Q+ GGG GPVP PKK+++ ALR ALSD+ + + V+ NL+ Sbjct: 74 GNARQGSIRAPQYNGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARLDQVFVVKNLI 133 Query: 131 SKEC-KTKYLVTRFRAL-DLSNALIIDGCQLDRNFQL---AARNIPNINLLPVQGINVYD 185 + E TK L D N L++ LDR+ +L + RN+P++++L +N YD Sbjct: 134 TGEAPSTKQAKLALAGLSDRKNTLVV----LDRDDELTERSVRNLPHVHVLTSDQLNTYD 189 Query: 186 ILRCSKLVLSKSAIEAL 202 +L +V ++SA+E Sbjct: 190 VLIADDIVFTESALETF 206 >gi|197294630|ref|YP_001799171.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense] gi|226730703|sp|B1VAE7|RL4_PHYAS RecName: Full=50S ribosomal protein L4 gi|171853957|emb|CAM11920.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense] Length = 207 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 106/207 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N G+ + ++F ++P Q L V+ Q R G +K R+ V+ Sbjct: 1 MPKYNVINQLGDLISTKDLKSNVFDIQPHQQALYDVINAQRAAMRQGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KV LAL+ ALS F Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVVFGPSPRNYSVKVNQKVSHLALKSALSSHFRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++++D+ K+K + L++++ +I +RN LA+RN+P + L Sbjct: 121 NQLILVDDFNLDTHKSKDFQKTLQKLNVTSKALIIVTNSNRNLTLASRNLPYVTLETAAH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C L+L+ A+ E+ K Sbjct: 181 ASVYQILNCKNLILTLDAVAYFEEVLK 207 >gi|53715465|ref|YP_101457.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46] gi|60683437|ref|YP_213581.1| 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343] gi|253566671|ref|ZP_04844124.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5] gi|255011647|ref|ZP_05283773.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] gi|265767549|ref|ZP_06095215.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16] gi|313149483|ref|ZP_07811676.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] gi|81313515|sp|Q5L8B0|RL4_BACFN RecName: Full=50S ribosomal protein L4 gi|81608233|sp|Q64NK9|RL4_BACFR RecName: Full=50S ribosomal protein L4 gi|52218330|dbj|BAD50923.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46] gi|60494871|emb|CAH09678.1| putative 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343] gi|251944843|gb|EES85318.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5] gi|263252854|gb|EEZ24366.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16] gi|301164922|emb|CBW24483.1| putative 50S ribosomal protein L4 [Bacteroides fragilis 638R] gi|313138250|gb|EFR55610.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] Length = 208 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKTLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKVFVEMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++S+++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTESSLKAIDN 205 >gi|237821420|ref|ZP_04597265.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974M2] Length = 207 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +S+ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGT RAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTRRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEE 204 >gi|309389932|gb|ADO77812.1| LSU ribosomal protein L4P [Halanaerobium praevalens DSM 2228] Length = 209 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 114/205 (55%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N G++ + ++E +F K + ++ +V+ Q +R G + +K R +V Sbjct: 1 MPQVTKFNQSGKELEKVELNESVFNDKINKHVVHQVVNAQLAARRGGNASTKTRGKVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P L KK+R LALR L+DK Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWVGGGITFGPSPRSYDKKLTKKMRRLALRSVLTDKVER 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D L + KTK +V L+L + ++I + D+N L+ARNIP + L Sbjct: 121 DELILVDKLELDQPKTKAVVNILADLNLEDKKVVIVMPEKDKNLYLSARNIPKVKTLLAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 IN YD+L ++ + A++ +E+ Sbjct: 181 SINAYDLLDNEMVIFIEEAVKMVEE 205 >gi|326436109|gb|EGD81679.1| hypothetical protein PTSG_02393 [Salpingoeca sp. ATCC 50818] Length = 243 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 11/189 (5%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + +F ++ IL RV+ +Q R G +K+K RSEV G K + QKGTGRAR Sbjct: 38 GMMELDPTVFGEDLRKDILQRVVVFQRASWRAGTAKTKTRSEVRGGGKKPWQQKGTGRAR 97 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 SS FRGGG GP P LPKKV+ + +R ALS K ND++++D+L Sbjct: 98 ASSIRSPLFRGGGTVHGPTPKDWSIKLPKKVQRMGVRVALSAKLAQNDLLIVDSLNLPSS 157 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 + DL AL + L N AA + ++ ++P + INVYD+L L++ Sbjct: 158 NEE---------DLLEALFSN--SLPPNLSAAAEGLDDVTVMPQRDINVYDMLNHPTLIM 206 Query: 195 SKSAIEALE 203 S A+ +E Sbjct: 207 SMDAVREVE 215 >gi|317123096|ref|YP_004103099.1| 50S ribosomal protein L4P [Thermaerobacter marianensis DSM 12885] gi|315593076|gb|ADU52372.1| LSU ribosomal protein L4P [Thermaerobacter marianensis DSM 12885] Length = 212 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILAR-VLRWQSWRKRIGCSKSKGRSEVAY 59 M ++V N GE G I +SE +F ++ ++ + V+R+ + ++R G + +K R V+ Sbjct: 1 MPRVAVYNTRGERVGEIELSETVFGAPVREALMHQAVVRYLANQRR-GTAATKTRGMVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S +R GG FGP P ALPKK R ALR ALS K Sbjct: 60 GGRKPWRQKGTGRARQGSIRAPHWRKGGIVFGPQPRDYSQALPKKARRAALRSALSAKVA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPN 172 +++V++ L KE + TR A L L +DG + D L+ARN+P Sbjct: 120 DGELIVLEGL--KELGLERPRTREVAA-LIERLDLDGKRPLFVLAEPDPTLYLSARNLPG 176 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ V +NVY +LR +VL++ A++ +E+ Sbjct: 177 VDTETVDRLNVYKVLRHGHVVLAREAVDRVEE 208 >gi|302536252|ref|ZP_07288594.1| 50S ribosomal protein L4 [Streptomyces sp. C] gi|302445147|gb|EFL16963.1| 50S ribosomal protein L4 [Streptomyces sp. C] Length = 216 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNLLLVAERSDELAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A+E+ Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202 >gi|21223083|ref|NP_628862.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)] gi|256785822|ref|ZP_05524253.1| 50S ribosomal protein L4 [Streptomyces lividans TK24] gi|289769714|ref|ZP_06529092.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24] gi|46577292|sp|Q9L0D9|RL4_STRCO RecName: Full=50S ribosomal protein L4 gi|7321293|emb|CAB82071.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)] gi|289699913|gb|EFD67342.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24] Length = 219 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF + K ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ ++ E TK T F + L++ + D L+ARN+P I++L Sbjct: 121 HNRIHVVTGVIEGENPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQIHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|294814468|ref|ZP_06773111.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|326442857|ref|ZP_08217591.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|294327067|gb|EFG08710.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] Length = 216 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V +++A E Sbjct: 181 LNTYDVIRSEDVVFTQAAFETF 202 >gi|254391392|ref|ZP_05006595.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|197705082|gb|EDY50894.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 4 MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ + Sbjct: 64 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 123 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 124 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V +++A E Sbjct: 184 LNTYDVIRSEDVVFTQAAFETF 205 >gi|326334544|ref|ZP_08200755.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693313|gb|EGD35241.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 209 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++SE +F ++P + ++ +R G KSK R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV+ LA R LS K Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRVFGPRPKDYTQKLNKKVKRLARRSVLSQKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ + KTK AL + + +L + ++N L++RNIP++N + Sbjct: 121 GAIIVLEDFNFETPKTKDFTQILAALGIQDKKSLFVL-ADTNKNVYLSSRNIPSVNTVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N YD+ + +VL +SA+E ++ Sbjct: 180 YELNTYDVANATNVVLLESAVEVIQ 204 >gi|145596433|ref|YP_001160730.1| ribosomal protein L4/L1e [Salinispora tropica CNB-440] gi|145305770|gb|ABP56352.1| LSU ribosomal protein L4P [Salinispora tropica CNB-440] Length = 216 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 1/201 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++G G + + DIF + ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVLTVEGTKAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V++ V+ E TK + L + +++ D ++ RN P ++L+ Sbjct: 121 DKVHVVEAFVAGEKPSTKAALATLAKLTEARRVLVVLSSTDELNWVSLRNEPRVHLIESG 180 Query: 180 GINVYDILRCSKLVLSKSAIE 200 +N YD+L +V +K A+E Sbjct: 181 QLNTYDVLLADDVVFTKEALE 201 >gi|218245139|ref|YP_002370510.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8801] gi|257058164|ref|YP_003136052.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8802] gi|226730649|sp|B7K334|RL4_CYAP8 RecName: Full=50S ribosomal protein L4 gi|218165617|gb|ACK64354.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8801] gi|256588330|gb|ACU99216.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8802] Length = 211 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ ++N GE+ G ++ + + I+ R L Q R G + +K R+EV Sbjct: 1 MVNCIIKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRLALRTALDSRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D++V++N + + KTK LV TR+ +D + +++ ++ N QL+ARN+P I L Sbjct: 119 EDLIVVENFAEQLTQPKTKELVSALTRW-GIDGNQKVVLIVSEITDNIQLSARNVPYIKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L G+NVYD+L K+V + A+ +++ + Sbjct: 178 LKADGLNVYDLLVADKIVATAEALSKVQEVY 208 >gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis] gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis] Length = 299 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 2/197 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D + G+I +++ +F P+ IL RV+ WQ ++R G + K RSEV G K + QKG Sbjct: 93 DDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQKG 152 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 +AR S FRGGG GP P + LPKKVR + LR ALS + D+ ++++ Sbjct: 153 LNKARQGSIRAPHFRGGGVVHGPKPRSYEYTLPKKVRRMGLRVALSVRLAQGDLHIVESF 212 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 E + L+ +A+++DG +R F+ AA ++ +++ + +NVY IL Sbjct: 213 DDIE-DDQDLMPILDQRGWQSAVLVDGSPNERLFEAAA-DLDKVDVFYSENVNVYSILLR 270 Query: 190 SKLVLSKSAIEALEDRF 206 L+LS A++ LE+R Sbjct: 271 HNLILSLDAVKQLEERL 287 >gi|50364939|ref|YP_053364.1| 50S ribosomal protein L4 [Mesoplasma florum L1] gi|81612930|sp|Q6F1Z3|RL4_MESFL RecName: Full=50S ribosomal protein L4 gi|50363495|gb|AAT75480.1| 50S ribosomal protein L4 [Mesoplasma florum L1] Length = 208 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 10/208 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ G++ IS+++ ++ + P + + + Q R G K+K R+EV G Sbjct: 1 MELKVLNVQGQEVKTISLNDSVWNVAPHKQAIYDTVISQQAALRQGTKKTKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG FGP P I ++ KKVR+LA + ALS K Sbjct: 61 KKPWRQKGTGRARQGSIRAPHWRGGGVTFGPTPDINYKKSVNKKVRALAFKSALSIKASE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQL---AARNIPNINL 175 +++++D + TK +++ + L + + LII N +L ++ NI + Sbjct: 121 QNLVIVDKFDFAKPSTKEMISVMKNLQIDDQKTLII----TKENEELVIKSSSNIKGVKT 176 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALE 203 LP +NV+DIL +KLV+++ A A+E Sbjct: 177 LPSIKLNVFDILNATKLVMTEEAAMAVE 204 >gi|218131326|ref|ZP_03460130.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697] gi|317476355|ref|ZP_07935604.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii 1_2_48FAA] gi|217986258|gb|EEC52595.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697] gi|316907381|gb|EFV29086.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii 1_2_48FAA] Length = 208 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYFFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ V Sbjct: 121 NGIIVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDN 205 >gi|187934984|ref|YP_001884474.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B] gi|188589298|ref|YP_001919673.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43] gi|251779469|ref|ZP_04822389.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226730642|sp|B2UYB1|RL4_CLOBA RecName: Full=50S ribosomal protein L4 gi|226730643|sp|B2TIH6|RL4_CLOBB RecName: Full=50S ribosomal protein L4 gi|187723137|gb|ACD24358.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B] gi|188499579|gb|ACD52715.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43] gi|243083784|gb|EES49674.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 206 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G I ++ ++F ++ + L +V+ KR G +K R+EV Sbjct: 1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK + A + LII + ++ +ARNI ++++PV Sbjct: 121 GQMVVLESLSFEAPKTKQFIEMLSAFNAKKTLIITAESNEAVYK-SARNIQGVSVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205 >gi|29348135|ref|NP_811638.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482] gi|253569591|ref|ZP_04847001.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6] gi|298386182|ref|ZP_06995739.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14] gi|46576805|sp|Q8A477|RL4_BACTN RecName: Full=50S ribosomal protein L4 gi|29340038|gb|AAO77832.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482] gi|251841610|gb|EES69691.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6] gi|298261410|gb|EFI04277.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14] Length = 208 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 119/205 (58%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ V + KTK V + L +S+ L++ + ++N L+ARNI N+ V Sbjct: 121 NALIVVEDFVFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|313895056|ref|ZP_07828613.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975951|gb|EFR41409.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str. F0430] Length = 207 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ + G I +S+D F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHKQVGEIDLSDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK V + + N + NIP + + G Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAITAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K A+ +E+ F Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206 >gi|302553543|ref|ZP_07305885.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736] gi|302471161|gb|EFL34254.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736] Length = 218 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF + K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGSVELPAEIFDVEKVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVVEGENPSTKSAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|223936427|ref|ZP_03628339.1| ribosomal protein L4/L1e [bacterium Ellin514] gi|223894945|gb|EEF61394.1| ribosomal protein L4/L1e [bacterium Ellin514] Length = 208 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 10/210 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL----KPQQGILARVLRWQS-WRKRIGCSKSKGRSE 56 ++L ++++ G +G + V F+L + Q + V+ +++ R C+K+ G E Sbjct: 1 MKLKIQDIKGNSQGEMDVK---FSLVTNGRGTQAVHDAVVAYRAAQRSGTACAKTVG--E 55 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 VA + K + QKGTGRAR S +RGGG FGP P + + + LA R AL++ Sbjct: 56 VAGSNKKPWKQKGTGRARAGSVRSPLWRGGGVVFGPRPRDFSKKISRSTKQLAFRKALTE 115 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + D++V+DN KTK V AL + ++ LD N A+RN+ + + Sbjct: 116 RLNAGDVLVVDNFKLASAKTKEFVGVLTALKVEGTALVVADALDANLSRASRNVAKVEVA 175 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y ILR KLV ++SA E +E+R Sbjct: 176 TSDSVNTYQILRSDKLVFTRSAFEKVEERL 205 >gi|313903150|ref|ZP_07836544.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965] gi|313466652|gb|EFR62172.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965] Length = 212 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 6/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILAR-VLRWQSWRKRIGCSKSKGRSEVAY 59 M ++V N GE G I +S+ +F ++ ++ + V+R+ + ++R G + +K R V+ Sbjct: 1 MPRVAVYNTQGERVGEIELSDAVFGAPVREALMHQAVVRYLANQRR-GTAATKTRGMVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q+R GG FGP P LPKK R ALR ALS K Sbjct: 60 GGRKPWRQKGTGRARQGSIRAPQWRKGGIVFGPQPRDYTQDLPKKARRAALRSALSAKVA 119 Query: 120 SNDIMV---IDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINL 175 +++V +D+L + +T+ + R LDL + + ++ L+ RN+P + Sbjct: 120 DGELIVLEGLDDLGLERPRTREMAALIRRLDLEGKRPLFVLAEPNKTLYLSVRNLPGADT 179 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204 V +NVY +LR +VL++ A+E E+ Sbjct: 180 ETVDRLNVYQVLRHGHVVLAREAVERAEE 208 >gi|114778823|ref|ZP_01453630.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1] gi|114550954|gb|EAU53518.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1] Length = 207 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+++ N ++ G ++ +F L + RV + +R G SK K RSEV+ Sbjct: 1 MAEITIVNQSNKEVGKRELNPAVFGLDADAAFVHRVYAALASAQRGGTSKVKDRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S +Q+R GG A GP + KK R AL ALSD Sbjct: 61 GKKPWKQKGTGRARAGSSRQAQWRHGGTAHGPSADTSFATRINKKERRRALCLALSDCLR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+D L E KTK V AL + LI+ G + + +L+ RN+PN ++ Sbjct: 121 EGKLTVVDKLELAEIKTKAFVDTLGALGADSGLIVLG-ESNNAVELSGRNVPNTRIVLDG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L+ ++VL+ +AI+ LE+R Sbjct: 180 QVNLHDLLKSKRVVLTSAAIDNLEERL 206 >gi|261367802|ref|ZP_05980685.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile DSM 15176] gi|282570600|gb|EFB76135.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile DSM 15176] Length = 206 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G+ + +S+ +F + P + + + +R G +K R EV Sbjct: 1 MAQFDVVDMNGKKVSTVELSDAVFGITPNEKAVHEAVVNFLANQRQGTQNTKIRKEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KKV+ LAL ALSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYYYTINKKVKRLALLSALSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++D + + KTK +V A+ +I LD F +A NIP + G Sbjct: 121 GNLIIVDKIAADAYKTKTVVAFLAAVGAGKKNLIVNDALDEKFVKSAANIPGVK-TAATG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD++ KL+LS A + LE+ + Sbjct: 180 VNTYDVVNADKLILSVDAAKKLEEVY 205 >gi|317054767|ref|YP_004103234.1| 50S ribosomal protein L4/L1e [Ruminococcus albus 7] gi|315447036|gb|ADU20600.1| ribosomal protein L4/L1e [Ruminococcus albus 7] Length = 207 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGIL-ARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +++V ++ G +++ IF ++P + ++ A V+ + + +R G + R+EV Sbjct: 1 MSKIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNFLA-NQRQGTQSTLTRTEVQG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P ++L KK + LA++ A S K Sbjct: 60 GGRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKEKRLAMKSAFSTKVI 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V++ + +KE KTK +V +A+ +I +D +A NIP + V Sbjct: 120 DNNLIVVNEIETKEYKTKVMVDMLKAIGAQGKALIVTADVDAKVVKSAANIPGVKTATVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++S A++ +E+ + Sbjct: 180 TLNVYDILNYDKFIVSSEAVKKIEEVY 206 >gi|304438363|ref|ZP_07398304.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368729|gb|EFM22413.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 207 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS+++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMAHNQVGEISLNDAFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D+L KTK V + + N + + NIP + + G Sbjct: 121 GDFIVLDHLDFDAPKTKAAVKLLSDFGVDAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|158297277|ref|XP_317543.4| AGAP007937-PA [Anopheles gambiae str. PEST] gi|157015117|gb|EAA12669.4| AGAP007937-PA [Anopheles gambiae str. PEST] Length = 224 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + +F P+ I+ + + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 10 GIVELDNAVFGASPRIDIVHQNIEWQRKYRFVSFAHTKTRNEVRGGGRKPWPQKGLGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +RGGG A GP P + LP R L L LS K +D+ V+ NL Sbjct: 70 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQDDLHVVKNLEIPT 129 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +YL A + L +D L RN ++A NI +INL+P G+NVY +L+ + Sbjct: 130 DDPQYLQDLVAARQWGPSVLFVDATDVLSRNISISAENIDHINLMPTYGLNVYSMLKHNT 189 Query: 192 LVLSKSAIEALEDRF 206 +VL++ A+ ++E + Sbjct: 190 VVLTEDAVRSVESKL 204 >gi|225376410|ref|ZP_03753631.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM 16841] gi|225211786|gb|EEG94140.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM 16841] Length = 206 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ G + +++ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVAVYNMEGKEVGSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L E KTK V L + AL++ D N +A N+ + Sbjct: 121 SKFVVVDELKLDEIKTKKFVEVMNNLKVEKALVVLNDN-DVNVIKSASNLATVKTAQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V++K A++ +E+ + Sbjct: 180 INVYDILKYDTVVVTKDAVKTIEEVY 205 >gi|238061120|ref|ZP_04605829.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149] gi|57547708|gb|AAW52547.1| RplD [Micromonospora sp. ATCC 39149] gi|237882931|gb|EEP71759.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149] Length = 216 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G G + + IF ++ ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVLNVEGAKSGSVELPAGIFDVQANIALMHQVVVAQLAAARQGTHKAKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKECKTK--YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V++ VS E + L T + + L++ + N+ ++ RN P ++L+ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLAKLTEAPRVLVVLSSSDELNW-VSLRNEPRVHLIEA 179 Query: 179 QGINVYDILRCSKLVLSKSAIE 200 +N YD+L +V +K A++ Sbjct: 180 GQLNTYDVLVADDVVFTKDALD 201 >gi|34541540|ref|NP_906019.1| 50S ribosomal protein L4 [Porphyromonas gingivalis W83] gi|46577171|sp|Q7MTL4|RL4_PORGI RecName: Full=50S ribosomal protein L4 gi|34397857|gb|AAQ66918.1| ribosomal protein L4 [Porphyromonas gingivalis W83] Length = 209 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G V +D IFA++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK+++LA R ALS K + Sbjct: 61 TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYSFKLNKKLKALARRSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ KTK AL + ++ ++++N L+ARN+PN NL+ Sbjct: 121 NEIIVVEDFNFDAPKTKAFKAISAALKVGEKKVLYVLPEVNKNVYLSARNLPNTNLILAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 IN Y +L LVL++ ++ + + FK Sbjct: 181 LINTYTVLASKNLVLTERSVAVVNELFK 208 >gi|312127227|ref|YP_003992101.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108] gi|312793938|ref|YP_004026861.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877366|ref|ZP_07737331.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A] gi|311777246|gb|ADQ06732.1| ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108] gi|311795840|gb|EFR12204.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A] gi|312181078|gb|ADQ41248.1| ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii 177R1B] Length = 208 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D + KTK ++ + L L N ALI+ + + Q + RNIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVI-PEKNEYLQKSTRNIPEVKTLQV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 180 GNLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|239929513|ref|ZP_04686466.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] gi|291437838|ref|ZP_06577228.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] gi|291340733|gb|EFE67689.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] Length = 219 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF + K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ +V E TK + F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVTGVVEGETPSTKAAKSLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204 >gi|120402317|ref|YP_952146.1| 50S ribosomal protein L4 [Mycobacterium vanbaalenii PYR-1] gi|119955135|gb|ABM12140.1| LSU ribosomal protein L4P [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 3/201 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ VR G+ G I + ++F ++P ++ +V+ Q KR G +K R EV+ G Sbjct: 7 KIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGGK 66 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ ALR ALSD+ ++ Sbjct: 67 KPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRARNDR 126 Query: 123 IMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I I +V + + F A D L++ G + D L+ RN+P ++++ Sbjct: 127 IHAITEIVEGQTPSTKSAKSFLATLTDRRQVLVVIG-RADEASALSVRNLPGVHVISPDQ 185 Query: 181 INVYDILRCSKLVLSKSAIEA 201 +N YD+L+ +V S A+ A Sbjct: 186 LNTYDVLKADDVVFSVEALNA 206 >gi|239905859|ref|YP_002952598.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1] gi|259491554|sp|C4XLX4|RL4_DESMR RecName: Full=50S ribosomal protein L4 gi|239795723|dbj|BAH74712.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1] Length = 210 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N ++ G + ++ ++F ++ Q +L V+R Q KR G K R+ V+ Sbjct: 1 MANVKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++++D + E KTK + ALI+ + D N +L+ARN+P I ++ Sbjct: 121 DQLVLLDAIAFPEVKTKLMAKVVSDFSWKKALIVL-PESDNNLELSARNLPGIKVVRQDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +V+ K A +++R Sbjct: 180 LNVYDVLLHDHVVMMKDAALKVQERL 205 >gi|296268551|ref|YP_003651183.1| 50S ribosomal protein L4/L1e [Thermobispora bispora DSM 43833] gi|296091338|gb|ADG87290.1| ribosomal protein L4/L1e [Thermobispora bispora DSM 43833] Length = 216 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 7/207 (3%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V + +G G + + E+IF K ++ +V+ Q +R G +K R +V+ G K Sbjct: 5 IDVLDANGAKAGTVELPEEIFGAKVNVPLMHQVVVAQLAARRQGTHATKTRGDVSGGGKK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 65 PYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRASCGRV 124 Query: 124 MVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQL---AARNIPNINLLPVQ 179 V+ NL++ + KTK + R + + +++ +D N +L + RN+P ++LL Sbjct: 125 HVVTNLITGDTPKTKVALAALRKVTQAPRVLV---VVDENDELTWRSLRNVPEVHLLDAG 181 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +V ++ A E + R Sbjct: 182 QLNTYDVLVNDDVVFTREAFEQVVARL 208 >gi|95931441|ref|ZP_01314147.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684] gi|95132509|gb|EAT14202.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684] Length = 206 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 3/204 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ ++E +F + + ++ ++R+Q +R G S K R+ VA Sbjct: 1 MAKVTVYDMQKNQVSERELNEVVFDAEVRPYLVHDMVRYQLAARRQGTSACKNRAAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR + + GGG AFGP P L +KV+ LAL ALS +F Sbjct: 61 GKKPFKQKGTGNARQGTVTAPNHVGGGVAFGPTPRNYAFKLNRKVKKLALCSALSSRFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ L TK +L +AL +ID + +L+ARN+ N+ +L Sbjct: 121 QKLTVLSELKLDSISTKSFKQVVDRFELKDALVVIDAANPE--VELSARNLRNVKVLRAD 178 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 G+NVYD+++ S LVL++ A+E LE Sbjct: 179 GVNVYDVMKYSNLVLTEGAVEQLE 202 >gi|297564038|ref|YP_003683011.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848487|gb|ADH70505.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 3/201 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N +G KG + + + +FA + ++ +V+ Q R G +K R +V Sbjct: 1 MAQIEVKNPEGGTKGSVELPDTVFAQQVSIPLIHQVVNAQLAAGRQGTHATKTRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSIRAPQYTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 I V+ V+++ ++K+ T +AL S+ +++ + D + + A RN+ +++L Sbjct: 121 GRIHVVSQFVAEDLESKFTQTALKALRQVTESDKVLVVLARDDEHNRRALRNVEEVHILD 180 Query: 178 VQGINVYDILRCSKLVLSKSA 198 +N YD+L +V +++ Sbjct: 181 ADQVNTYDVLYSDDVVFTEAG 201 >gi|319757242|gb|ADV69184.1| 50S ribosomal protein L4 [Streptococcus suis JS14] Length = 207 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FG P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +++L KT AL + + +++ + + L+ARNIP + + Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANADKLLVTQAAISKIEE 204 >gi|317507410|ref|ZP_07965144.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC BAA-974] gi|316254295|gb|EFV13631.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + +++ DG+ G + +IF +L +V+ Q R G K+K R EV+ G Sbjct: 3 LTVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKAKTRGEVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S F GGG GPVP PKK+++ ALR ALSD+ Sbjct: 63 KKPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGE 122 Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I ++D LV+ + + + F ++ + L++ + D + RN+P+ ++L Sbjct: 123 RIHIVDELVAGQTPSTKKASAFLDSISIRPRLLVVLGRADEAGLKSVRNLPHAHILTPDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD+L+ +V S A+ + K Sbjct: 183 LNTYDVLKSDDIVFSLEALTTFIEHHK 209 >gi|332018616|gb|EGI59197.1| 39S ribosomal protein L4, mitochondrial [Acromyrmex echinatior] Length = 286 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++++ I+A P+ I+ + +RWQ + + + +K R+EV G K + QKGTGRAR Sbjct: 71 GLVTLHPHIYAAAPRIDIIHQNIRWQRMYRWVSYAHTKTRAEVRGGGRKPWPQKGTGRAR 130 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +RGGG A GP P + LP R L LS K +D+ ++D L Sbjct: 131 HGSIRSPLWRGGGVAHGPRSPTPHFYMLPFYTRIAGLTATLSVKLAQDDLHIVDELEIPT 190 Query: 134 CKTKYLVTRFRALDLSNA-LIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + Y+ + + L++D + N LA I ++N++PV G+NVY +L+ + Sbjct: 191 SEPSYVEQLIEERNWGPSILLVDSYDIMPTNITLATDKIKHVNIMPVYGLNVYSMLKHNT 250 Query: 192 LVLSKSAIEALEDRF 206 LVL++ A +E++ Sbjct: 251 LVLTEKAARLIEEKL 265 >gi|329938231|ref|ZP_08287682.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045] gi|329302720|gb|EGG46610.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045] Length = 219 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF + K ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HDRIHVVTGVVEGETASTKAARTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|329117498|ref|ZP_08246215.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020] gi|326907903|gb|EGE54817.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020] Length = 207 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 EKFVAVESLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|322410859|gb|EFY01767.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 207 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALGIDTKVLVLIEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI A+E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISAIEE 204 >gi|227832220|ref|YP_002833927.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] gi|262183925|ref|ZP_06043346.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] gi|254803728|sp|C3PKQ3|RL4_CORA7 RecName: Full=50S ribosomal protein L4 gi|227453236|gb|ACP31989.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] Length = 220 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ DG+ G + + ++F + ++ +V+ Q R G K+K R EV G Sbjct: 4 LKLDVQTADGKTNGTVELPAELFDTEASIALMHQVVNAQLAAARQGTHKTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GPVP PK++ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKRMIKAALYGALSDRARNE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV + + F R D N L++ G + D N + +A N+PN+ +L Sbjct: 124 RIHVIEELVPGQTPSTKQAKAFIERLTDRKNVLLVIGRE-DINARRSANNLPNVQILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 183 QLNTYDVLYSDDVVFSVEALHTFVER 208 >gi|225869537|ref|YP_002745484.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047] gi|254803754|sp|C0M6G6|RL4_STRE4 RecName: Full=50S ribosomal protein L4 gi|225698941|emb|CAW91969.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047] Length = 207 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++DIF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDDIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEE 204 >gi|330470172|ref|YP_004407915.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032] gi|328813143|gb|AEB47315.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032] Length = 216 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 1/201 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G G + + DIF ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVDVLNSEGTKTGSVELPGDIFDVQANVPLMHQVVVAQLAAARQGTHKTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ VS E TK + + + +++ +D ++ RN P ++L+ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALAALTKVTEARRVLVVLSSVDELNWVSLRNEPRVHLIEAG 180 Query: 180 GINVYDILRCSKLVLSKSAIE 200 +N YD+L +V +K A++ Sbjct: 181 QLNTYDVLVADDVVFTKEALD 201 >gi|312622046|ref|YP_004023659.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002] gi|312202513|gb|ADQ45840.1| ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002] Length = 208 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINNHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIELPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D + KTK ++ + L L N ALI+ + + Q + +NIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVI-PEKNEYLQKSTKNIPEVKTLQV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 180 GNLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|225027479|ref|ZP_03716671.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353] gi|224955214|gb|EEG36423.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353] Length = 198 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 1/198 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 ++G G I +S+ IFA+ + ++ + + Q KR G K+K RSEV G K + QK Sbjct: 1 MEGAQVGTIELSDSIFAVPVNEHLVHQAVVAQLANKRQGTQKAKTRSEVRGGGRKPWRQK 60 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG AR S Q+ GGG F P P + KK + LA++ L+ K + +V+D Sbjct: 61 GTGHARQGSIRAPQWTGGGVVFAPTPRDYSVKMNKKEKQLAMKSVLTSKVNESKFIVLDE 120 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L E KTK + L + ALI+ + D + +A N+P + + INVYDIL+ Sbjct: 121 LKLAEIKTKQIKAVLDNLKVEKALIVTKEKDDVVVK-SANNLPKVATTALNNINVYDILK 179 Query: 189 CSKLVLSKSAIEALEDRF 206 +V++ A+ A+E+ + Sbjct: 180 YDTVVVTSEAVAAIEEVY 197 >gi|320108395|ref|YP_004183985.1| 50S ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4] gi|319926916|gb|ADV83991.1| ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4] Length = 226 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 2/209 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N +GE G + +++++F ++ + +L ++ R G + +K + V+ Sbjct: 1 MAKINVVNFNGERVGEVELADEVFGVEVNEALLWEAVKHYRASLRQGTAATKNKKLVSGA 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P + PKK ALR AL+ K Sbjct: 61 GKKLWKQKGTGRARVGSIRSPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSALASKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIID-GCQLDRNFQLAARNIPNINLLPV 178 + V+++L + E KTK LD AL+++ G +L N +RN+ + L+ Sbjct: 121 GKLTVVESLAAAEPKTKLYRQALDKLDAKKTALLVESGHKLTENAFFGSRNLDGVELVLS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+LR + SK A EA+++ K Sbjct: 181 SEVHPYDLLRYEHAIFSKDAFEAIQEMLK 209 >gi|329956704|ref|ZP_08297277.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056] gi|328524076|gb|EGF51152.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056] Length = 208 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDN 205 >gi|329962268|ref|ZP_08300274.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057] gi|328530376|gb|EGF57253.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057] Length = 208 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++S + A+++ Sbjct: 181 GLNTYRVLDAGVVVLAESTLSAIDN 205 >gi|297201730|ref|ZP_06919127.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083] gi|197710895|gb|EDY54929.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083] Length = 218 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF + K +L +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPSGDTAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +N I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 NNRIHVVSGVIEGESPSTKAAKTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|160888398|ref|ZP_02069401.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492] gi|317477750|ref|ZP_07936943.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36] gi|156862075|gb|EDO55506.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492] gi|316906095|gb|EFV27856.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36] Length = 208 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ + Sbjct: 121 NAVVVVEDFSFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDN 205 >gi|306832548|ref|ZP_07465688.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC 700338] gi|304425306|gb|EFM28432.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC 700338] Length = 207 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFTAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|224537818|ref|ZP_03678357.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus DSM 14838] gi|224520504|gb|EEF89609.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus DSM 14838] Length = 208 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG +AFGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARAFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++++++ + KTK V + L +S+ L++ + ++N L+ARN+ + N+ V Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKKLKVSDKKLLVILPEANKNVYLSARNVESANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLNAGVVVFTESALSAIDN 205 >gi|240145877|ref|ZP_04744478.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis L1-82] gi|257202026|gb|EEV00311.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis L1-82] gi|291535431|emb|CBL08543.1| LSU ribosomal protein L4P [Roseburia intestinalis M50/1] Length = 206 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ G + +++ +F ++ + ++ + Q R G K+K RSEV Sbjct: 1 MANVAVYNMEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK V L + AL++ +D N +A N+P + Sbjct: 121 SKFIVVDELKLDSIKTKNFVQVLNNLKVEKALVVLN-DMDTNVIKSASNVPTVKTAQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L+ +V++K A++ +E+ + Sbjct: 180 LNVFDVLKYDTVVVTKDAVKTIEEVY 205 >gi|320009101|gb|ADW03951.1| ribosomal protein L4/L1e [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGGISTKAAKTLFGKISERSNLLLVVERADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|290958150|ref|YP_003489332.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22] gi|260647676|emb|CBG70781.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22] Length = 219 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF + K ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKVSIPLIHQVVVAQNAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ ++ E TK + F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVIEGENPSTKAAKSLFGKISERKNLLLVVERADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V ++ A+E+ Sbjct: 181 GQLNTYDVIVSDDVVFTQGALESF 204 >gi|270294751|ref|ZP_06200952.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20] gi|270273998|gb|EFA19859.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20] Length = 208 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ + Sbjct: 121 NAVVVVEDFSFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDN 205 >gi|171778376|ref|ZP_02919555.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|288904274|ref|YP_003429495.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34] gi|325977253|ref|YP_004286969.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|171282907|gb|EDT48331.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|288730999|emb|CBI12543.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34] gi|325177181|emb|CBZ47225.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 207 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|159039833|ref|YP_001539086.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205] gi|157918668|gb|ABW00096.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205] Length = 216 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++G G + + DIF + ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVHTVEGTTAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRTRA 120 Query: 121 NDIMVIDNLVSKE--CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V++ V+ E L T + D L++ + N+ ++ RN P ++L+ Sbjct: 121 GKLHVVEAFVAGEKPSTKAALATLAKLTDARRVLVVLSSTDELNW-VSLRNEPRVHLIES 179 Query: 179 QGINVYDILRCSKLVLSKSAIE 200 +N YD+L +V ++ A++ Sbjct: 180 GQLNTYDVLVADDVVFTREALD 201 >gi|153805958|ref|ZP_01958626.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185] gi|149130635|gb|EDM21841.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185] Length = 208 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 NAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|329577748|gb|EGG59174.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1467] Length = 188 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 101/184 (54%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 ++IF ++P + ++ + Q R G K RS V G K + QKGTGRAR S Sbjct: 2 KEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRS 61 Query: 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV 140 Q+RGGG FGP P + LPKKVR LA++ LSDK N+++ ++ L KTK Sbjct: 62 PQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGLSFDAPKTKEFK 121 Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 L + +++ + L+ARN+PN++++ ++V D++ +K++ +++A+ Sbjct: 122 QVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALT 181 Query: 201 ALED 204 +E+ Sbjct: 182 QIEE 185 >gi|237510710|gb|ACQ99342.1| ribosomal protein L4 [Turicella otitidis] Length = 217 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V DG G + + +IF + + +V+ Q R G +K R EV G Sbjct: 4 LKLDVHTADGNTNGQVELPSEIFEREASIELTHQVVVAQLAAARQGTHSTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK++ AL ALS++ ++ Sbjct: 64 KKPYRQKGTGRARQGSIRAPQFTGGGIVHGPKPRDYSQRTPKKMKRAALHGALSNRAAND 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ LV + F R N L++ + D N + +A N+P++++L Sbjct: 124 RIHVVEELVPGTKPSTKAARSFLERLTGRKNVLLVVQAE-DLNARRSANNLPDVHILVPS 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+++ +V SK+A+EA DR Sbjct: 183 QLNTYDVIKSDDVVFSKAALEAFIDR 208 >gi|146297284|ref|YP_001181055.1| ribosomal protein L4/L1e [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166234648|sp|A4XLS9|RL4_CALS8 RecName: Full=50S ribosomal protein L4 gi|145410860|gb|ABP67864.1| LSU ribosomal protein L4P [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 208 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MPKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D + +TK ++ + L L N ALI+ + + Q + +NIP + L V Sbjct: 121 NNLIVLDKWDMNQYRTKEVIRVLKNLGLENEKALIVI-PEKNEYLQKSTKNIPEVKTLQV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K ++ + A++ +E+ + Sbjct: 180 GNLNVFDILKYDKFIILQDAVKKVEEVY 207 >gi|322796484|gb|EFZ18991.1| hypothetical protein SINV_11616 [Solenopsis invicta] Length = 287 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++++ I+A P+ I+ + +RWQ + + + +K R+EV G K + QKGTGRAR Sbjct: 72 GLVTLHPHIYATAPRIDIVHQNVRWQKMYRWVSYAHTKTRAEVRGGGRKPWPQKGTGRAR 131 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S ++GGG A GP P + LP R L LS K +D+ +ID L Sbjct: 132 HGSIRSPLWKGGGIAHGPRSPTPHFYMLPFYTRVAGLTSMLSIKLAQDDLHIIDELEIPT 191 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + Y+ + + L +D + N LA I ++NL+PV G+NVY +L+ + Sbjct: 192 SEPSYVEQLVEERNWGPSVLFVDSYDIMPPNITLATDKIKHVNLMPVYGLNVYSMLKHNT 251 Query: 192 LVLSKSAIEALEDRF 206 LVL++ A +E++ Sbjct: 252 LVLTEKAARLIEEKL 266 >gi|304438906|ref|ZP_07398829.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372572|gb|EFM26155.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 229 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 93/172 (54%) Query: 36 VLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI 95 V++ Q KR G K R+EV G K + QKGTGRAR S Q+R GG F P Sbjct: 58 VVKNQLANKRQGTHACKTRAEVRGGGRKPWRQKGTGRARQGSIRSPQWRKGGIVFAKKPR 117 Query: 96 IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155 + PKKVR LAL+ L+ K N+I+VID++ KTK A+ + + + Sbjct: 118 DYSYTTPKKVRRLALKSVLTSKVNLNEIIVIDDIKMDNIKTKDFKNFLNAVGVKKSAYVV 177 Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + DRN L+ARNI + + INVYD+L+ LV+SK+A+ + + FK Sbjct: 178 TAEHDRNVNLSARNIAGVKASEARLINVYDLLKHENLVISKAALGTVSEVFK 229 >gi|222529729|ref|YP_002573611.1| 50S ribosomal protein L4 [Caldicellulosiruptor bescii DSM 6725] gi|254803711|sp|B9MKI0|RL4_ANATD RecName: Full=50S ribosomal protein L4 gi|222456576|gb|ACM60838.1| ribosomal protein L4/L1e [Caldicellulosiruptor bescii DSM 6725] Length = 208 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D + KTK ++ + L L N ALI+ + + Q + +NIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVI-PEKNEYLQKSTKNIPEVKTLQV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 180 GNLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|218262296|ref|ZP_03476810.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii DSM 18315] gi|218223447|gb|EEC96097.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii DSM 18315] Length = 209 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 N I+V+++ + KTK VT + L +++ ++ NF L+ARN+ N++ Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L + LVL++S++ +E F Sbjct: 181 ELNTYTVLNAANLVLTESSVAVIEKLF 207 >gi|167764371|ref|ZP_02436496.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC 43183] gi|167697776|gb|EDS14355.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC 43183] Length = 208 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDN 205 >gi|320548054|ref|ZP_08042334.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812] gi|320447296|gb|EFW88059.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812] Length = 207 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 EKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|300779844|ref|ZP_07089700.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium ATCC 33030] gi|300533954|gb|EFK55013.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V DG KG + + ++F + ++ +V+ Q R G K+K R EV G Sbjct: 4 LTLDVHTADGATKGTVELPAELFDREASVPLMHQVVNAQLAAARQGTHKTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GPVP PKK+ AL AL+++ ++ Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKKMIKAALAGALTNRAQND 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ LV + + F R D + L++ G + D N +L+ARN+P + +L Sbjct: 124 RIHVVEELVPGQTPSTKSARAFVERLTDRKSVLLVIGRE-DVNSRLSARNLPGVTILEPG 182 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L +V S +EAL D Sbjct: 183 QLNTYDVLNADDVVFS---VEALHD 204 >gi|256827415|ref|YP_003151374.1| 50S ribosomal protein L4P [Cryptobacterium curtum DSM 15641] gi|256583558|gb|ACU94692.1| LSU ribosomal protein L4P [Cryptobacterium curtum DSM 15641] Length = 207 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKGRSEVA 58 M + V+++ G+ V ++ +F ++P ++ +V+R Q SWR+ G + R +V Sbjct: 1 MANIEVKDVSGKKVEVRDLNAGVFGIEPNVHVMHQVVRAQRASWRQ--GTHDTLTRGQVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S Q+RGGG FGP P + K LA+R ALS K Sbjct: 59 GGGKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++ V+D+ +E KTK +AL ++ + D N LA RN+PN+ ++PV Sbjct: 119 ADGELFVVDSFGFEEPKTKSAAAALKALGITGRTTLVIGNEDVNTYLAFRNLPNVEVIPV 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 N YD + L+ + A+ +E+ Sbjct: 179 MAGNTYDFVNNKALIFTAEALSRIEE 204 >gi|227499194|ref|ZP_03929329.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21] gi|226904641|gb|EEH90559.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 4/207 (1%) Query: 1 MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++++ +L G+ G I + + +F ++ + ++ + + Q +R G +K R V Sbjct: 1 MPKVAIYDLTGKKTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S + GGG FGP P +P+K R LA+R ALS K Sbjct: 61 GGRKPWKQKGTGRARAGSVRSPLWVGGGTIFGPSPRSHAIDMPRKARRLAIRCALSSKVA 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLP 177 ++++D L + KTK V + + SN ALII + + N +L++RNI + L Sbjct: 121 DGSLVIVDGLSFADNKTKNTVEMLKGFEASNKKALIITDGE-NENVELSSRNIEKVKALS 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +NV+DIL K++L+K A+ +E+ Sbjct: 180 NDCLNVFDILNAEKVLLAKDAVARIEE 206 >gi|302543360|ref|ZP_07295702.1| ribosomal protein L4/L1 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302460978|gb|EFL24071.1| ribosomal protein L4/L1 family protein [Streptomyces himastatinicus ATCC 53653] Length = 217 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPTEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+ +V + TK + +++ + D L+ARN+P +++L Sbjct: 121 SRVHVVTGVVEGDISTKAAKVLLGKISQRKHVLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A+E+ Sbjct: 181 LNTYDVLVSDDVVFTKAALESF 202 >gi|124003663|ref|ZP_01688511.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134] gi|123990718|gb|EAY30185.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134] Length = 208 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N +GE G +++++ I+A++P ++ ++ +R G K+K R+E+ + Sbjct: 1 MELEVINREGESTGKKVTLADAIYAIEPNDHVIYLDVKQHLANRRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L +KV+SLA + AL+ K Sbjct: 61 TKKLKKQKGTGTARAGSIKSPLFRGGGRIFGPRPRDYHFKLNRKVKSLARKSALTYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N+I V+++ + KT+ + N LI+ ++N L++RN+P +LP Sbjct: 121 NNITVVEDFNLEAPKTQDYQKVLNNISEKNEKTLLILPDH--NKNLYLSSRNLPKAKVLP 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 IN +++L K+++ +S++E +E+ F Sbjct: 179 CSQINTFELLNADKVLIFESSVEQIENLF 207 >gi|320529797|ref|ZP_08030874.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis F0399] gi|320137815|gb|EFW29720.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis F0399] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G I +++D F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNKVGEIDLNDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK V + + N + NIP + + G Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAVTAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K A+ +E+ F Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206 >gi|241895186|ref|ZP_04782482.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313] gi|241871492|gb|EER75243.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 110/204 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ +F ++P ++ + Q R G K RS V+ Sbjct: 1 MTKVALFKQDGSNAGDIELNDSVFGVEPNNNVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +PKK LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKMPKKAYRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D L KTK L+++ ++ + N LAARN+ N+ ++ +G Sbjct: 121 SSLVVVDALSFDAPKTKEFKAVLNNLNVNEKTLVVLDDDNANAALAARNLENVTVMTAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NV D++ KL++ +SA+ +E+ Sbjct: 181 VNVLDVINNDKLIVVQSALAQVEE 204 >gi|15674288|ref|NP_268461.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS] gi|19745242|ref|NP_606378.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232] gi|28894955|ref|NP_801305.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1] gi|50913440|ref|YP_059412.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10394] gi|71902710|ref|YP_279513.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS6180] gi|71909859|ref|YP_281409.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS5005] gi|94987676|ref|YP_595777.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS9429] gi|94989556|ref|YP_597656.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10270] gi|139472928|ref|YP_001127643.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo] gi|251781516|ref|YP_002995817.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306828259|ref|ZP_07461519.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC 10782] gi|46396575|sp|P60831|RL4_STRP8 RecName: Full=50S ribosomal protein L4 gi|73917536|sp|Q5XED4|RL4_STRP6 RecName: Full=50S ribosomal protein L4 gi|76363882|sp|P0C0D5|RL4_STRPY RecName: Full=50S ribosomal protein L4 gi|81171140|sp|P0C0D6|RL4_STRP1 RecName: Full=50S ribosomal protein L4 gi|109893643|sp|Q48VU8|RL4_STRPM RecName: Full=50S ribosomal protein L4 gi|166199912|sp|Q1JP16|RL4_STRPC RecName: Full=50S ribosomal protein L4 gi|166199913|sp|Q1JJ61|RL4_STRPD RecName: Full=50S ribosomal protein L4 gi|166199914|sp|A2RC15|RL4_STRPG RecName: Full=50S ribosomal protein L4 gi|13621368|gb|AAK33183.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS] gi|19747336|gb|AAL96877.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232] gi|28475247|emb|CAD67589.1| ribosomal protein L4 [Streptococcus pyogenes] gi|28810200|dbj|BAC63138.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1] gi|50902514|gb|AAT86229.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS10394] gi|71801805|gb|AAX71158.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS6180] gi|71852641|gb|AAZ50664.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS5005] gi|94541184|gb|ABF31233.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS9429] gi|94543064|gb|ABF33112.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10270] gi|134271174|emb|CAM29387.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo] gi|242390144|dbj|BAH80603.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304429570|gb|EFM32619.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC 10782] gi|323126312|gb|ADX23609.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEE 204 >gi|225629697|ref|ZP_03787669.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591450|gb|EEH12518.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 201 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 6/204 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ +R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLANRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK T RAR S QFRGGG P ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTARARPGSLRSPQFRGGGIILRPFVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++++DNL KT + + S+ I+ G L R AA+N+ ++L+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFSIVGDYGDDLLR----AAKNLHYVDLIKPI 176 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 G+NV+DIL ++L+K ++ LE Sbjct: 177 GLNVFDILNHECVMLTKDTLKHLE 200 >gi|21909577|ref|NP_663845.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315] gi|46396643|sp|Q8K8X3|RL4_STRP3 RecName: Full=50S ribosomal protein L4 gi|21903758|gb|AAM78648.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEE 204 >gi|254421500|ref|ZP_05035218.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335] gi|196188989|gb|EDX83953.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335] Length = 210 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 117/211 (55%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G +S+ + + + I+ R L Q R G + +K R+EV Sbjct: 1 MVDCVVKNWQGEEAGSVSLELKVASEENASHIVHRALVRQINNGRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYTTKMNRKERRLALRTAFQSR--A 118 Query: 121 NDIMVIDNLVSK--ECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 N++ V+ + ++ + KTK +TR+ +D S +++ + + N L+ RN+PN+ + Sbjct: 119 NEMTVVKDFAAELTQPKTKEALAALTRWE-IDASAKVLMVFSERNDNVYLSLRNVPNVRM 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL LV+++SA+E +++ + Sbjct: 178 IDATNLNIYDILHADSLVVTESALEKIQEVY 208 >gi|317050529|ref|YP_004111645.1| 50S ribosomal protein L4/L1e [Desulfurispirillum indicum S5] gi|316945613|gb|ADU65089.1| ribosomal protein L4/L1e [Desulfurispirillum indicum S5] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 4/204 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIF--ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M +SV N++ E G +++S+++F A+KP ++ V+ Q +R G K RS V+ Sbjct: 1 MPVVSVINVNNEKVGEVALSDELFGGAVKPH--LMHEVVVAQLAARRQGTHAVKNRSAVS 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 GSK + QKGTGRAR + +R GG FGP P + KKVR AL ALS+K Sbjct: 59 GGGSKPWRQKGTGRARAGTSRSPLWRTGGVIFGPTPRSYEKKVNKKVRRQALVSALSEKA 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V D+ + KTK F L ++ ++D LA RN+P + L+ Sbjct: 119 AQQSIVVFDDFALESPKTKLANQVFAKCSLDRKVLFVVDEMDSPKALAMRNLPFVKLIKP 178 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +G+NVYD++ L KS E L Sbjct: 179 EGLNVYDVVNAKVLAFEKSTAERL 202 >gi|222152266|ref|YP_002561441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J] gi|254803757|sp|B9DSV1|RL4_STRU0 RecName: Full=50S ribosomal protein L4 gi|222113077|emb|CAR40441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|313889542|ref|ZP_07823187.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026] gi|313122051|gb|EFR45145.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026] Length = 207 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|228472296|ref|ZP_04057062.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC 33624] gi|228276499|gb|EEK15223.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC 33624] Length = 209 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++SE +F ++P + ++ +R G KSK R+EVA + Sbjct: 1 MEVAVVNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV+ LA R LS K Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLNKKVKRLARRSILSQKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ + KTK AL + + +L + ++N L++RNIP++N + Sbjct: 121 GAIIVLEDFSLETPKTKDFTKILAALGIQDKKSLFVL-ADTNKNVYLSSRNIPSVNTVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N YDI +VL +S++E ++ Sbjct: 180 SELNTYDIANAKTVVLLESSVEVIQ 204 >gi|169335630|ref|ZP_02862823.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM 17244] gi|169258368|gb|EDS72334.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM 17244] Length = 205 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V N+ GE +S++ DIF ++P ++ + ++ +R G +K R+EV G Sbjct: 1 MKADVLNVKGEVVESVSLNNDIFKIEPNMPVVHQYVKAYLANQRQGTQSAKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG AF P P ++ KK++ LA++ S K Sbjct: 61 KKPWRQKGTGRARVGSSRNPVWTGGGVAFAPKPRDYSQSINKKMKRLAMKSVFSAKVNDK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ ++D L KTK +V F L ++ L++ + D+N + RNI + V + Sbjct: 121 ELFILDELKFDAPKTKAMVEVFDNLKINKTLVVI-AENDKNVVNSVRNIKDAKCATVGTL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVY++L+ + L+L+K A+ +E+ +K Sbjct: 180 NVYEMLKYNNLILTKDALTKIEEVYK 205 >gi|296141114|ref|YP_003648357.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162] gi|296029248|gb|ADG80018.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162] Length = 217 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 1/199 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ DG+ G + + IF ++P ++ +V+ Q R G +K R EV G Sbjct: 4 LTLDVKTADGKTDGTVELPAAIFDVEPNISLMHQVVIAQLAAARAGTHSTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR AL+++ + Sbjct: 64 RKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALTERVRED 123 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ LV+ +E TK L ++ + D Q + +N+PN + Sbjct: 124 RIHVVTELVAGQEASTKTARLFLAQLSERKKFLVVVGREDLTAQRSVQNLPNAKWIYPDQ 183 Query: 181 INVYDILRCSKLVLSKSAI 199 +N YD+L LV S+ A+ Sbjct: 184 LNTYDVLDADDLVFSREAL 202 >gi|298483065|ref|ZP_07001246.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22] gi|298270809|gb|EFI12389.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22] Length = 208 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G +S++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVSLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|154494381|ref|ZP_02033701.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC 43184] gi|154085825|gb|EDN84870.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC 43184] Length = 209 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 N I+V+++ + KTK VT + L +++ ++ NF L+ARN+ N++ Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LVL++S++ +E F Sbjct: 181 ELNTYSVLNAVNLVLTESSVAVIEKLF 207 >gi|209558628|ref|YP_002285100.1| 50S ribosomal protein L4 [Streptococcus pyogenes NZ131] gi|226731433|sp|B5XJ37|RL4_STRPZ RecName: Full=50S ribosomal protein L4 gi|209539829|gb|ACI60405.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NZ131] Length = 207 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 105/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEE 204 >gi|332182015|gb|AEE17703.1| ribosomal protein L4/L1e [Treponema brennaborense DSM 12168] Length = 210 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 106/201 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L + ++ + + KR+G + +K RSEV + Sbjct: 1 MEKKVYSVDGKELRTITLDDKVFGLPVNEDVIYYAINNELANKRVGTACTKDRSEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K RGGG FGP P LPKKV+ LA++ LS K + Sbjct: 61 AKPYKQKGTGRARRGDKKSPLCRGGGVIFGPKPRDFSFVLPKKVKRLAMKSILSLKAQGD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++ + KTK LV + +I D N + A RNIP ++ L + Sbjct: 121 RLTVIEDFTVESGKTKDLVAILKNFPSDGRTVIVLKDDDANIKQAGRNIPAVSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 +D+ K+++ +SA++ L Sbjct: 181 RAHDLFYGRKVIMLESAVKNL 201 >gi|257064319|ref|YP_003143991.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476] gi|256791972|gb|ACV22642.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476] Length = 207 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 102/207 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N GE + + +F ++P ++ V+R Q R G +K R EV Sbjct: 1 MATIEIKNASGEKASEVELESAVFGIEPNVHVMHTVVRSQQAAMRQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+ GGG FGP P + +K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNRKEVKLAMRSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+++ ++ TK V +A L I D N L+ RNIP +N++ V Sbjct: 121 GQLMVVEDFKFEKPCTKEAVAFLKANGLDRRTTIVIPNDDVNAYLSFRNIPKVNVISVGE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 N +++ LVL+ S ++ LE+ K Sbjct: 181 ANTMELIDNKVLVLTASTLKRLEEVLK 207 >gi|160947699|ref|ZP_02094866.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270] gi|158446833|gb|EDP23828.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270] Length = 207 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N GE G I ++E IF ++ + ++ V++ +R G +K R+EV Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG F P P +++PKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ ++D L TK + L L +I + + + N+P + + V Sbjct: 121 GELRILDALTIDAFSTKKAKEILKNLSLETKTMIVLPEGNDMIVKSFANLPKVETVVVDY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++R LV+ K A+ +E+ + Sbjct: 181 MNVYDLMRFDNLVIVKDALSKIEEVY 206 >gi|312889366|ref|ZP_07748920.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603] gi|311298243|gb|EFQ75358.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603] Length = 208 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNVSGKETGASVHLPESVFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKALD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N I+V+++ KTK + L+LS+ L++ + N L++RN+ ++ Sbjct: 121 NSIVVLEDFTFDAVKTKTYIQFVADLNLSDEKTLLVLPSA--NNNIYLSSRNLKKSKVIT 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 ++ YD+L KL+L+ +++ LE+ Sbjct: 179 ADQLSTYDVLNAGKLLLTTDSVKTLEE 205 >gi|224023619|ref|ZP_03641985.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM 18228] gi|224016841|gb|EEF74853.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM 18228] Length = 209 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GE+ G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEETGRKVTLNESIFGITPNDHAIYLDVKQYMASQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKALARKSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N+I+V+++ + KTK V L +S +++ G D+N L+ARN+ N++ Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVSGKKLLMVLSGA--DKNVYLSARNLERTNVMV 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV+++SA++A+E+ Sbjct: 179 ASALNTYKVLDAETLVVTESALKAIEE 205 >gi|210631083|ref|ZP_03296739.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279] gi|210160171|gb|EEA91142.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279] Length = 208 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 1/195 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N +G+ +++ ++ ++P ++ +++ Q R G +KGRSEV+ Sbjct: 1 MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P V + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D+ ++ TK V +AL L L I + D N L+ RNIP ++ Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVREDDINAYLSFRNIPKTWIITPA 180 Query: 180 GINVYDILRCSKLVL 194 N YD++ L++ Sbjct: 181 EANTYDLINNGALIM 195 >gi|257054471|ref|YP_003132303.1| 50S ribosomal protein L4P [Saccharomonospora viridis DSM 43017] gi|256584343|gb|ACU95476.1| LSU ribosomal protein L4P [Saccharomonospora viridis DSM 43017] Length = 228 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + ++ GE +G + + +IF ++ ++ +V+ Q R G +K R EV G K Sbjct: 5 VELKTPTGEAQGTVELPSEIFDVQANIPLMHQVVVAQMAAARQGTHDTKTRGEVRGGGRK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + + Sbjct: 65 PYRQKGTGRARQGSIRAPQFVGGGTVHGPTPRDYTQRTPKKMKAAALRGALSDRARAGQV 124 Query: 124 MVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +I LV+ E TK A+ + +++ + D +L+ARN+P ++LL +N Sbjct: 125 HIITELVTGEKPSTKAAKAALAAVTQAKRILVVLHRDDELGRLSARNLPYVHLLTPDQLN 184 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V +K+A +A Sbjct: 185 TYDVLVNDDVVFTKAAFDAF 204 >gi|298207728|ref|YP_003715907.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559] gi|83850365|gb|EAP88233.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559] Length = 208 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +++S+ +F ++P + + ++ KR G K+K R+E+A + Sbjct: 1 MEIAVLDIKGKEIGRKVTLSDAVFGIEPNEHAVYLDVKQHLANKRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK + LA R ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKKQKQLARRSALSQKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I++++N KTK + L + N +LI+ G ++N L++RN N++ V Sbjct: 121 NAIVIVENFSFDAPKTKNYIDFLTNLGIENNKSLIVLG-DTNKNVYLSSRNFKGSNVVTV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N Y I+ LVL + ++E +E Sbjct: 180 SELNTYKIMNSQSLVLLEGSLEEIE 204 >gi|293372117|ref|ZP_06618508.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC 3f] gi|292632909|gb|EFF51496.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC 3f] Length = 208 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGTNVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|260175417|ref|ZP_05761829.1| 50S ribosomal protein L4 [Bacteroides sp. D2] gi|315923647|ref|ZP_07919887.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697522|gb|EFS34357.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 208 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 119/205 (58%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMTNQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI + N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIESANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|55821904|ref|YP_140346.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311] gi|55823820|ref|YP_142261.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066] gi|116628597|ref|YP_821216.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMD-9] gi|228478067|ref|ZP_04062678.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius SK126] gi|322515868|ref|ZP_08068810.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124] gi|81558868|sp|Q5LXR2|RL4_STRT1 RecName: Full=50S ribosomal protein L4 gi|81560055|sp|Q5M2B4|RL4_STRT2 RecName: Full=50S ribosomal protein L4 gi|122266809|sp|Q03IF2|RL4_STRTD RecName: Full=50S ribosomal protein L4 gi|55737889|gb|AAV61531.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311] gi|55739805|gb|AAV63446.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066] gi|116101874|gb|ABJ67020.1| LSU ribosomal protein L4P [Streptococcus thermophilus LMD-9] gi|228250247|gb|EEK09500.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius SK126] gi|312279258|gb|ADQ63915.1| 50S ribosomal protein L4 [Streptococcus thermophilus ND03] gi|322125655|gb|EFX96982.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124] Length = 207 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFAAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEE 204 >gi|229821622|ref|YP_002883148.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333] gi|229567535|gb|ACQ81386.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333] Length = 221 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 102/200 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + + V + G+ G + D+F ++ ++ +V+ Q R G K+K R EV Sbjct: 6 TLTVDVIDAKGKKSGTADLPADVFDVQTNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 65 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 66 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 125 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+ V+ TK + + + +++ + D L+ RN+P ++L+ Sbjct: 126 DRVHVVSGFVADAPSTKAALAVLGQVTEAERVLVVLERTDTTAWLSLRNVPAVHLIHPDQ 185 Query: 181 INVYDILRCSKLVLSKSAIE 200 +N YD+L +V ++ A+E Sbjct: 186 LNTYDVLVSDDVVFTRGALE 205 >gi|237717400|ref|ZP_04547881.1| 50S ribosomal protein L4 [Bacteroides sp. D1] gi|262406165|ref|ZP_06082715.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22] gi|294644060|ref|ZP_06721837.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC 2a] gi|294807316|ref|ZP_06766129.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens SD CC 1b] gi|229443383|gb|EEO49174.1| 50S ribosomal protein L4 [Bacteroides sp. D1] gi|262357040|gb|EEZ06130.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22] gi|292640584|gb|EFF58825.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC 2a] gi|294445481|gb|EFG14135.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens SD CC 1b] Length = 208 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVIVLTENSLKAIDN 205 >gi|313673466|ref|YP_004051577.1| ribosomal protein l4/l1e [Calditerrivibrio nitroreducens DSM 19672] gi|312940222|gb|ADR19414.1| ribosomal protein L4/L1e [Calditerrivibrio nitroreducens DSM 19672] Length = 207 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 104/199 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N E G + +S++I + ++ V++ Q +R G + R+ + Sbjct: 1 MALVDVLNTKNEKVGQVEISDNIMTYPVKPWLIHEVVKMQLACRRAGTHATLNRALIEGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +++PKK ALR A+ KF Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYSYSMPKKKVKNALRSAVKAKFDD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++DN V + KTK A+ LS ++I ++D +A RN+P ++ L V+G Sbjct: 121 AAVKIVDNFVVESGKTKDAQKLLDAMGLSKRVLIVYSEIDDKTFMAFRNLPKVDFLNVKG 180 Query: 181 INVYDILRCSKLVLSKSAI 199 +NVYD++ +++ K A+ Sbjct: 181 LNVYDVVNADNIIIVKDAL 199 >gi|295085427|emb|CBK66950.1| LSU ribosomal protein L4P [Bacteroides xylanisolvens XB1A] Length = 208 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|160883063|ref|ZP_02064066.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483] gi|237718742|ref|ZP_04549223.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4] gi|299144623|ref|ZP_07037691.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23] gi|156111535|gb|EDO13280.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483] gi|229451874|gb|EEO57665.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4] gi|298515114|gb|EFI38995.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23] Length = 208 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +VL++++++A+++ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDN 205 >gi|182436626|ref|YP_001824345.1| 50S ribosomal protein L4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777248|ref|ZP_08236513.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1] gi|178465142|dbj|BAG19662.1| putative 50S ribosomal protein L4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657581|gb|EGE42427.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 101/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVDLPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|197117324|ref|YP_002137751.1| 50S ribosomal protein L4 [Geobacter bemidjiensis Bem] gi|253701921|ref|YP_003023110.1| 50S ribosomal protein L4 [Geobacter sp. M21] gi|226730668|sp|B5EFQ1|RL4_GEOBB RecName: Full=50S ribosomal protein L4 gi|259491560|sp|C6E4Q6|RL4_GEOSM RecName: Full=50S ribosomal protein L4 gi|197086684|gb|ACH37955.1| ribosomal protein L4 [Geobacter bemidjiensis Bem] gi|251776771|gb|ACT19352.1| ribosomal protein L4/L1e [Geobacter sp. M21] Length = 207 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ G I + + +F ++ ++ ++ Q +R G K R+ VA + Sbjct: 1 MAKLDVFDIKKAKVGEIELDDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRALVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + Q+ GGG AFGP P ++ KK R ALR ALS + Sbjct: 61 GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQPKDYNLSMNKKARKAALRSALSMLYKK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++L KTK V A +L L+I +L+ARN+ ++ +L +G Sbjct: 121 DAITVVNSLELPSIKTKAFVEVLTAFNLDKTLVITDTATP-TLELSARNVKHVKVLGPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +N++DI++ +V +++A+ +E Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVE 202 >gi|150008983|ref|YP_001303726.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503] gi|255014814|ref|ZP_05286940.1| 50S ribosomal protein L4 [Bacteroides sp. 2_1_7] gi|256841016|ref|ZP_05546523.1| ribosomal protein L4/L1 [Parabacteroides sp. D13] gi|262383873|ref|ZP_06077009.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B] gi|298375784|ref|ZP_06985740.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19] gi|301312032|ref|ZP_07217954.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3] gi|166234697|sp|A6LEJ0|RL4_PARD8 RecName: Full=50S ribosomal protein L4 gi|149937407|gb|ABR44104.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503] gi|256736859|gb|EEU50186.1| ribosomal protein L4/L1 [Parabacteroides sp. D13] gi|262294771|gb|EEY82703.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B] gi|298266821|gb|EFI08478.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19] gi|300830134|gb|EFK60782.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3] Length = 209 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVFNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+SLA + ALS K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKSLARKSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQ 179 N I+V+++ + KTK +T + L +++ ++ N L+ARN+ +++ Sbjct: 121 NAIVVVEDFTMEAPKTKEFITIAKNLKVADKKLLMVLPEKNNLVYLSARNLEKASVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N Y +L LVL++S++ +E FK Sbjct: 181 ELNTYAVLNAVNLVLTESSVAVVEQNFK 208 >gi|300933009|ref|ZP_07148265.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100] Length = 217 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V DG+ G + + IF + ++ +V+ Q KR G +K R +V G Sbjct: 4 LKLDVHTADGKTNGSVELPASIFDAEVSVALMHQVVTAQLAAKRQGTHATKARGDVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ Sbjct: 64 RKPWRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRARHA 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+++LV + + F R D + L++ G + D N + + RN+PN++ L Sbjct: 124 RIHVVEDLVPGQTPSTKSARGFLERLTDRKSVLVVLGRE-DINSRKSVRNLPNVHTLVSD 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 183 QLNTYDVLNADDVVFSVEALNAF 205 >gi|302869971|ref|YP_003838608.1| 50S ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029] gi|315501432|ref|YP_004080319.1| ribosomal protein l4/l1e [Micromonospora sp. L5] gi|302572830|gb|ADL49032.1| ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029] gi|315408051|gb|ADU06168.1| ribosomal protein L4/L1e [Micromonospora sp. L5] Length = 221 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G G + + DIF + ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVDVINVEGAKSGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN-----IN 174 + V++ VS E TK + L + +++ D ++ RN+ N ++ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLTKLTQARRVLVVLSSTDELNWVSLRNLRNARDSRVH 180 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIE 200 L+ +N YD+L +V +K A++ Sbjct: 181 LIEAGQLNTYDVLVADDVVFTKEALD 206 >gi|149179415|ref|ZP_01857969.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797] gi|148841726|gb|EDL56135.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797] Length = 209 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI +++++ G++ G A + +L V+ KRIG SK+K R V + Sbjct: 1 MISVAIQDKAGKEVGKYEFESTELANGINRQLLHDVVVMYEANKRIGSSKTKSRGMVVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTGRAR + RGGG F P + LPKK LA R A+ KF Sbjct: 61 TKKLYRQKGTGRARAGASRTPVRRGGGHTFAKTPKDWSYRLPKKAVKLATRMAILSKFED 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 + +ID L + KTK + +AL LS+ L ++G D +ARNI + + P Sbjct: 121 EQVTLIDELALQAPKTKEVAGVLKALGLSSTSCLLTVEGH--DPVVWKSARNIAGVQVSP 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD+L ++VL+KSA++ L R + Sbjct: 179 ASDLNAYDVLHQRQMVLTKSALDRLLGRVE 208 >gi|194246734|ref|YP_002004373.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali] gi|254803748|sp|B3QZZ2|RL4_PHYMT RecName: Full=50S ribosomal protein L4 gi|193807091|emb|CAP18529.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali] Length = 207 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 109/207 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ N G+ I + ++IF + + +L V+ Q R G +K R+ V+ Sbjct: 1 MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG AFGP P + +KVR LAL+ ALS K + Sbjct: 61 GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++IDN+ + KTK L++ +I L+ N L+ RN+ + L V Sbjct: 121 KNLILIDNINLETHKTKEFQNILDQLNIQQKTLILTKDLNHNLCLSIRNLSKVLLETVSH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY +L S ++L+K A E+ K Sbjct: 181 VSVYQLLSYSTIILTKEAANYFEENLK 207 >gi|312862390|ref|ZP_07722633.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396] gi|311102033|gb|EFQ60233.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396] Length = 207 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFVAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEE 204 >gi|213962804|ref|ZP_03391064.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena Capno] gi|213954461|gb|EEB65783.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena Capno] Length = 209 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+++L KTK ++L L N I + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSIFVLPNTNNNVYLSSRNVPTSSVVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y ++ S +VL++S++ LE Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLE 204 >gi|183981054|ref|YP_001849345.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M] gi|226730696|sp|B2HSN2|RL4_MYCMM RecName: Full=50S ribosomal protein L4 gi|183174380|gb|ACC39490.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M] Length = 224 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 3/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V+ DG+ G +++ ++F + ++ +V+ Q R G +K R +V+ G Sbjct: 12 LEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGG 71 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 72 RKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNG 131 Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I + LV+ + + F A D L++ G + D+ + RN+P +++L Sbjct: 132 RIHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIG-RDDQTGVKSVRNLPGVHILSPD 190 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 191 QLNTYDVLRADDVVFSVEALNA 212 >gi|150025406|ref|YP_001296232.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86] gi|166234666|sp|A6GZ98|RL4_FLAPJ RecName: Full=50S ribosomal protein L4 gi|149771947|emb|CAL43421.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86] Length = 209 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N++G++ G + +S+ +FA++P + + ++ +R G K+K R+EVA + Sbjct: 1 MEVKVLNINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGTHKAKERAEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA R A S K Sbjct: 61 TRKIKKQKGTGTARAGSAKNPLFKGGGRVFGPRPRSYSFKLNKTVKRLARRSAFSIKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 +I+V+++ V + TK + +AL L + +L + G ++N L++RN+ N+L Sbjct: 121 ANIIVVEDFVFEAPNTKNFINVLKALGLEDKKSLFVLGDS-NKNVYLSSRNLKATNVLTN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 ++ Y IL + LVL + ++E +E+ Sbjct: 180 SELSTYAILNANNLVLLEGSLEGIEE 205 >gi|255690004|ref|ZP_05413679.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM 17565] gi|260624612|gb|EEX47483.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM 17565] Length = 208 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S+ L++ + ++N L+ARNI N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L ++L++++++A+++ Sbjct: 181 GLNTYRVLNAGVVMLTENSLKAIDN 205 >gi|315225402|ref|ZP_07867216.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea F0287] gi|314944675|gb|EFS96710.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea F0287] Length = 209 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIKGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKLQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+++L KTK ++L L N +L + + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVL-PNTNNNVYLSSRNVPTSSVVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N Y ++ S +VL++S++ LE Sbjct: 180 SELNTYQLVNASNVVLTESSVAVLE 204 >gi|312376204|gb|EFR23370.1| hypothetical protein AND_13049 [Anopheles darlingi] Length = 490 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 3/188 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++S+ +F P+ I+ + + WQ + + + SK R+EV G K + QKG GRAR Sbjct: 52 GILSLENAVFGASPRIDIVHQNIEWQRKYRFVSFAHSKTRNEVRGGGRKPWPQKGLGRAR 111 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +RGGG A GP P + LP R L L LS K ND+ V+ +L Sbjct: 112 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQNDLHVVQDLEIPT 171 Query: 134 CKTKYLVTRFRA-LDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +YL L + L +D L RN + A +I +INL+PV G+NVY +L+ + Sbjct: 172 EDPQYLRDLVSERLWGPSVLFVDSSDILPRNISIGADSINHINLMPVYGLNVYSMLKHNT 231 Query: 192 LVLSKSAI 199 LVL++SA+ Sbjct: 232 LVLTESAL 239 >gi|225867666|ref|YP_002743614.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus] gi|259491569|sp|C0MCB1|RL4_STRS7 RecName: Full=50S ribosomal protein L4 gi|225700942|emb|CAW97646.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus] Length = 207 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEE 204 >gi|170032333|ref|XP_001844036.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus] gi|167872322|gb|EDS35705.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus] Length = 278 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 8/208 (3%) Query: 6 VRNLDGEDK---GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + NLD ++ G+ +S ++F P+ I+ + + WQ + + + +K R+EV G Sbjct: 52 IENLDTVEERKLGIQELSNEVFGATPRIDIVHQNVEWQRKYRYVSFAHAKTRNEVRGGGR 111 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG G+ARH S +RGGG A GP P + LP R L L LS K + Sbjct: 112 KPWPQKGLGKARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQD 171 Query: 122 DIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQL-DRNFQLAARNIPNINLLPV 178 D+ ++D+L ++L + + RA S L +D L RN +I ++NL+PV Sbjct: 172 DLHIVDSLDIPTDDPQFLRDLVQERAWGPS-VLFVDSSDLMPRNITAGTESIDHVNLMPV 230 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ + LVL++ A E +E + Sbjct: 231 YGLNVYSMLKHNTLVLTREAAEEIEAKL 258 >gi|313888849|ref|ZP_07822510.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845218|gb|EFR32618.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 207 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G + +SE +FA + V++ KR G +K R+EV Sbjct: 1 MPKIQMIDIKGNPVEEVELSEGLFAAPVSTHAVYLVVKNILANKRQGTHSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P + PKK R +AL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAKKPRDYSYTTPKKTRRVALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++D++ +E KTK + + ++ +++ Q AARNI + Sbjct: 121 GEMILVDSIQMEEAKTKVFANILKNIGAGKKALVVVNDDEKDVQRAARNIAGVKTSRATD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ LV++KSA++ +E+ F Sbjct: 181 INVYDLLKYDNLVITKSALDVVEEVF 206 >gi|258406184|ref|YP_003198926.1| 50S ribosomal protein L4 [Desulfohalobium retbaense DSM 5692] gi|257798411|gb|ACV69348.1| ribosomal protein L4/L1e [Desulfohalobium retbaense DSM 5692] Length = 206 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 1/192 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G +++S ++F + + IL +V+R Q KR G K RS + G K + QKGTGRAR Sbjct: 15 GEVTLSSEVFEREVRAEILHQVVRSQLAAKRRGTVGVKTRSLIRGGGRKPWRQKGTGRAR 74 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 + + GG GP + KKV+ LAL+ A+S + ++++V+D++ +E Sbjct: 75 AGTVRSPIWTGGAIVHGPQARDYDIKVNKKVKRLALKMAMSSRLAEDNLVVVDSVTPEEV 134 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK LDL LI+ + D +L+ARNIP + ++ +N +D+L +LVL Sbjct: 135 KTKSFRKIQEQLDLKKCLIVT-AEKDNTLELSARNIPGVTVMTWDNLNTFDVLNHDQLVL 193 Query: 195 SKSAIEALEDRF 206 A+E +E++ Sbjct: 194 EAKAVEKIEEKL 205 >gi|189460685|ref|ZP_03009470.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136] gi|189432644|gb|EDV01629.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136] Length = 209 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKTLARKSALAYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L ++ L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFEAPKTKEFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV+++SA++A+E+ Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEE 205 >gi|195977209|ref|YP_002122453.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226730727|sp|B4U501|RL4_STREM RecName: Full=50S ribosomal protein L4 gi|195973914|gb|ACG61440.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 207 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVSADKLLVTKEAISTIEE 204 >gi|313472594|ref|ZP_07813083.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 1153] gi|313448951|gb|EFR61269.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 1153] Length = 178 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 2/176 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 N+++V+D L KTK L++ + +++ + N QL+ARN+ + L Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLV--VSDNENVQLSARNLETLRLF 174 >gi|322374046|ref|ZP_08048580.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150] gi|321277012|gb|EFX54083.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150] Length = 207 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 108/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEE 204 >gi|256819983|ref|YP_003141262.1| 50S ribosomal protein L4 [Capnocytophaga ochracea DSM 7271] gi|256581566|gb|ACU92701.1| ribosomal protein L4/L1e [Capnocytophaga ochracea DSM 7271] Length = 209 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+++L KTK ++L L N +L + + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVL-PNTNNNVYLSSRNVPTSSVVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N Y ++ S +VL++S++ LE Sbjct: 180 SELNTYQLVNASNVVLTESSVAVLE 204 >gi|300857763|ref|YP_003782746.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41] gi|300685217|gb|ADK28139.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41] gi|302205501|gb|ADL09843.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis C231] gi|302330056|gb|ADL20250.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis 1002] gi|308275737|gb|ADO25636.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis I19] Length = 217 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G+ G + + +IF + ++ +V+ Q KR G +K R+EV+ G Sbjct: 4 LKLDVLTAEGKTDGQVELPAEIFDREASVALMHQVVNAQLAAKRQGTHSTKTRAEVSGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARHE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV + + F R D N L++ G + D Q +ARN+P +++L Sbjct: 124 RIHVITELVPGQTPSTKSARAFVERITDRRNVLLVVGRE-DTTAQKSARNLPGVHILFAD 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L+ +V S A+ +R Sbjct: 183 QLNTYDVLKSDDVVFSVEALNTFINR 208 >gi|17933744|ref|NP_524939.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster] gi|7298296|gb|AAF53526.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster] gi|16769472|gb|AAL28955.1| LD33485p [Drosophila melanogaster] gi|220944276|gb|ACL84681.1| mRpL4-PA [synthetic construct] gi|220954122|gb|ACL89604.1| mRpL4-PA [synthetic construct] Length = 296 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ I+ + WQS + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +GGG GP P + LP R L L LS K +D+ +IDN+ Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPT 200 Query: 134 CKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + +++I + N A+ ++ +NL+P G+NVY +L+ Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|108761551|ref|YP_631499.1| 50S ribosomal protein L4 [Myxococcus xanthus DK 1622] gi|122388945|sp|Q1D774|RL4_MYXXD RecName: Full=50S ribosomal protein L4 gi|108465431|gb|ABF90616.1| ribosomal protein L4 [Myxococcus xanthus DK 1622] Length = 207 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LD + I +S+D+F +P + V + Q +R G K S V+ Sbjct: 1 MAKFDVVDLDLKKVSEIELSDDVFGTEPNAHLFYEVAKMQQINRRRGTVGVKNTSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S S + GGGKA P + P+KVR AL+ ALS + Sbjct: 61 GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALKSALSLRAQE 120 Query: 121 NDIMVID--NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++++D +L + + K + V R L L NAL+ID + + N + RN+ ++LP Sbjct: 121 KTLIILDGFSLDAPKSKQAFEVLTKR-LKLQNALVIDD-KGNTNLHRSVRNLAKFDVLPP 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +G+N+ +LR S LVL+ +A + LE Sbjct: 179 EGLNLEAVLRHSHLVLTSAAAKTLE 203 >gi|269122580|ref|YP_003310757.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386] gi|268616458|gb|ACZ10826.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386] Length = 212 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 5/209 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + +DG G + V E+IF +KP + ++ VL + R G + +K R+EV Sbjct: 1 MPVLDIYTIDGTKAGTVDVKEEIFGIKPNKAVMHEVLTAELAEVRQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG + GP P V + KKVR LA+R ALS K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVSHGPKPRDYVKKVNKKVRKLAIRSALSAKVNK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQ--LAARNIPNINL 175 +I++ID ++ KTK ++ + LD++ A I++ ++ + L+ RNI + Sbjct: 121 GEIIIIDAFELEKPKTKTIIDFSKKLDMAGAKQLYILNDLYIENEYNAYLSIRNIEKSYV 180 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204 L ++VY +L+ K+++++ A+ +E+ Sbjct: 181 LMPNELSVYWLLKQDKIIMTREALAQIEE 209 >gi|296392586|ref|YP_003657470.1| 50S ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985] gi|296179733|gb|ADG96639.1| ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985] Length = 218 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + +++ DG+ G + +IF +L +V+ Q R G K K R EV+ G Sbjct: 3 LTVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKVKTRGEVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S F GGG GPVP PKK+++ ALR ALSD+ Sbjct: 63 RKPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGG 122 Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D LV+ + + + F ++ L++ + D + RN+P+ ++L Sbjct: 123 RVHIVDELVAGQSPSTKKASAFLDSIASRPRLLVVLGRADETGLKSVRNLPHAHILTPDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD+L+ +V S A+ + K Sbjct: 183 LNTYDVLKSDDIVFSLEALTTFIEHHK 209 >gi|221632977|ref|YP_002522200.1| 50S ribosomal protein L4/L1 family [Thermomicrobium roseum DSM 5159] gi|221156742|gb|ACM05869.1| ribosomal protein L4/L1 family [Thermomicrobium roseum DSM 5159] Length = 212 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G I +++ +F + P ++ + L Q R G +K R EV G Sbjct: 1 MQVPVYDLEGRAVDQIELADSVFGITPNIPVMHQALVRQLANARAGTHDTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S ++GGG +GP P +PKK+R LA+R LS K N Sbjct: 61 RKPWRQKGTGRARQGSIRAPHWKGGGVVWGPHPRSYRQEMPKKMRRLAIRSLLSVKQREN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLP 177 I+V+ L E KTK + + L L+ A +++D Q N + AA N+ ++ +L Sbjct: 121 QIVVVRGLTDIEPKTKVMKGVLQRLPLATARSTLIVVD--QRRDNVRRAAGNLEDVKVLV 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +N+ D L+ +++L+ A+E + Sbjct: 179 AHNMNIRDGLKYERMILTPEAVEVIH 204 >gi|229815774|ref|ZP_04446099.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM 13280] gi|229808690|gb|EEP44467.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM 13280] Length = 208 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 1/195 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N +G+ +++ ++ ++P ++ +++ Q R G +KGRSEV+ Sbjct: 1 MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P V + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D+ ++ TK V +AL + L I + D N L+ RNIP ++ Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGIEGKRLTIIVREDDINAYLSFRNIPKTFIITPA 180 Query: 180 GINVYDILRCSKLVL 194 N YD++ L++ Sbjct: 181 EANTYDLVNNGALLM 195 >gi|189465419|ref|ZP_03014204.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM 17393] gi|189437693|gb|EDV06678.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM 17393] Length = 208 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++++++ + KTK V + L +S+ L++ + ++N L+ARN+ + N+ + Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVESANVQTLS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+N Y +L +V ++SA+ A+++ Sbjct: 181 GLNTYRVLNAGVVVFTESALSAIDN 205 >gi|255536153|ref|YP_003096524.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium 3519-10] gi|255342349|gb|ACU08462.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium 3519-10] Length = 209 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 14/214 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + + E IF ++P Q + ++ +R G KSK RSE+ + Sbjct: 1 MELTVFNTSGKETGRSVQLDEAIFGIEPNQHAVYLEVKQYLAAQRQGTHKSKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ FRGGG+ FGP P L K ++ LA + LS K Sbjct: 61 TRKLKKQKGSGSARYGDIKSPTFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N I V++ KTK + +L+NAL +G + ++N L++RN+P Sbjct: 121 NSIKVLEAFNFDAPKTKEFI------NLNNALGFEGKKSLYILPEANKNVYLSSRNLPKT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 +L I+ YD++ ++V + AIE ++ + Sbjct: 175 TVLTYNEISSYDLVHAGEIVFLEGAIEKFQENLR 208 >gi|220917122|ref|YP_002492426.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1] gi|254803709|sp|B8J861|RL4_ANAD2 RecName: Full=50S ribosomal protein L4 gi|219954976|gb|ACL65360.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1] Length = 206 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 ++++ KT AL AL++D N LA RN+ + L V Sbjct: 121 QKLVIVQEWKPGAPKTAAAAKVLSALGAKKALVVDDAA---NLALAKSVRNLHGSDFLAV 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +G+NVYDILR LVL+ + LE Sbjct: 178 EGLNVYDILRHDALVLTADTAKKLE 202 >gi|239943578|ref|ZP_04695515.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] gi|239990031|ref|ZP_04710695.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 11379] gi|291447045|ref|ZP_06586435.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] gi|291349992|gb|EFE76896.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 101/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKSLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|118470088|ref|YP_885820.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155] gi|166234688|sp|A0QSD2|RL4_MYCS2 RecName: Full=50S ribosomal protein L4 gi|118171375|gb|ABK72271.1| ribosomal protein L4/L1 family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 1/202 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ G + + ++F ++P ++ +V+ Q KR G +K R EV+ Sbjct: 2 TLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGG 61 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 62 GKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 121 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I + LV + TK T L + +++ + D + RN+P ++++ Sbjct: 122 DRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPD 181 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V S A+ A Sbjct: 182 QLNTYDVLNADDVVFSVEALNA 203 >gi|306830303|ref|ZP_07463474.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427550|gb|EFM30651.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 107/204 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTSRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEE 204 >gi|288574663|ref|ZP_06393020.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570404|gb|EFC91961.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM 11002] Length = 206 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + GE G +S+S ++F + + +V+ Q +R G +KGR +V Sbjct: 1 MPSIKLVTITGESTGELSLSGNVFDVPLHVPAMHQVVVAQLANRRQGTHCTKGRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GGG GP P + KKVR LA+ ALS K Sbjct: 61 GKKPWRQKHTGRARHGSSRSPIWVGGGVTHGPKPRNYRQKVNKKVRRLAICSALSQKIRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +M + ++ TK + F++L + L+I + D N ++ RNIP ++L V Sbjct: 121 AQLMGFEAFSMEKPSTKIMKGLFQSLGVEKPLVIVDHR-DENISMSTRNIPGADVLHVDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + +S A++ LE+ + Sbjct: 180 INVYDLLKHGHVFISAGAVKKLEEVY 205 >gi|299139131|ref|ZP_07032307.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8] gi|298598811|gb|EFI54973.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8] Length = 222 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 3/209 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V NL G G + E +FA + + +L ++ R G +K R V+ Sbjct: 1 MANINVVNLTGAKVGEFELDE-VFAGEVNEALLWEAVKHYRASLRQGTHATKNRKLVSGA 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P +A P+K ALR A++ K Sbjct: 60 GKKLWKQKGTGRARVGSIRTPLWRGGGTVHGPQPRSYEYAFPRKKLMGALRSAIASKIAD 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGC-QLDRNFQLAARNIPNINLLPV 178 V++N E KTK T L+ AL+++ QL L +RN+ + L+ Sbjct: 120 GKFTVVENFDVSEGKTKLYRTALNKLEAKKTALLVETSQQLSEKLYLGSRNLQGVELVLS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+L+ + SKSA+EAL++ K Sbjct: 180 SEVHPYDLLKYEHAIFSKSALEALQETLK 208 >gi|225711982|gb|ACO11837.1| Mitochondrial 39S ribosomal protein L4 [Lepeophtheirus salmonis] gi|290562960|gb|ADD38874.1| 39S ribosomal protein L4, mitochondrial [Lepeophtheirus salmonis] Length = 275 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 4/195 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++ + D++ + P+ I+A L+WQ K++ + K R E+ G++ + QKGTGRARH Sbjct: 58 IVDLHPDVWGVAPRLDIIADNLKWQENYKKVEYNYVKDRYELPGKGARPWPQKGTGRARH 117 Query: 76 SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---DNLVS 131 SK + GGKA GP P LP + R L H LS KF +DI+++ D+L S Sbjct: 118 KSKRSPIWLQGGKAHGPKGPKTNFFMLPYQHRVNGLIHTLSVKFAQDDIIIVQNFDDLES 177 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + + + R LS + N A+ +I ++N++P G+NV+ +L+ Sbjct: 178 TDPEDLEDLISERGWGLSTLFVNGDSIAPENITAASESILHVNVMPSFGLNVHSMLKHKT 237 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A+ +ED+ Sbjct: 238 LVLTLDAVNLIEDKL 252 >gi|325108616|ref|YP_004269684.1| 50S ribosomal protein L4P [Planctomyces brasiliensis DSM 5305] gi|324968884|gb|ADY59662.1| LSU ribosomal protein L4P [Planctomyces brasiliensis DSM 5305] Length = 217 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI + V N G + G A + +L V+ +R+G +K R++VA + Sbjct: 1 MISVPVYNQQGSEVGTYEFDPTELASGVNKQLLHDVVVMYEANRRVGTFATKSRADVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR K RGGG F P + LPKK LA R A+ KF Sbjct: 61 KKKMYRQKGTGNARAGGKRSPIRRGGGHTFAKTPRDFSYRLPKKAIRLATRMAVLSKFQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 + I VID++ E KTK + F L + + L ID D N +ARN+ + + P Sbjct: 121 DQIKVIDDVKFSEPKTKQVTGMFSQLGVEPSKTLLAIDAH--DTNVWKSARNVAGLRVTP 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 G+N YD+L LV++ SA++ L Sbjct: 179 SVGLNAYDVLHQRMLVVTTSALDRL 203 >gi|29831470|ref|NP_826104.1| 50S ribosomal protein L4 [Streptomyces avermitilis MA-4680] gi|46577225|sp|Q82DP4|RL4_STRAW RecName: Full=50S ribosomal protein L4 gi|29608585|dbj|BAC72639.1| putative ribosomal protein L4 [Streptomyces avermitilis MA-4680] Length = 221 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G++ G + + +IF + K +L +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPSGDNAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + I VI ++ E + F + + N L++ + D L+ARN+P +++L Sbjct: 121 NARIHVITGVIEGETPSTKAAKSFLGKVSERKNVLLVI-ERSDEAALLSARNLPQVHILE 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 180 PGQLNTYDVLVSDDVVFTQAAFESF 204 >gi|83814571|ref|YP_445168.1| ribosomal protein L4/L1 family protein [Salinibacter ruber DSM 13855] gi|109893635|sp|Q2S3R3|RL4_SALRD RecName: Full=50S ribosomal protein L4 gi|83755965|gb|ABC44078.1| ribosomal protein L4/L1 family [Salinibacter ruber DSM 13855] Length = 215 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + DG + G ++ +F ++P I+ ++ +R G SK+K R EV + Sbjct: 1 MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K+Y QKGTG AR RGGG+A G P H L +K + LA R ALS K + Sbjct: 61 GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++I VI+N T+ L F L + +++ +++R L+++N+P++N+ VQ Sbjct: 121 DNIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 IN DIL ++L + A++ L D Sbjct: 181 SINTVDILDADVVLLQEGALDWLTD 205 >gi|134103263|ref|YP_001108924.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] gi|291007944|ref|ZP_06565917.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] gi|166990952|sp|A4FPM4|RL4_SACEN RecName: Full=50S ribosomal protein L4 gi|133915886|emb|CAM05999.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 1/200 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L VR DG+ G + + +IF ++ ++ +V+ Q R G +K R +V+ G Sbjct: 3 VTLDVRTPDGKTDGTVELPAEIFDVQANIALMHQVVVAQLAAGRQGTHATKTRGQVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QF GGG GP P PKK++ ALR ALSD+ + Sbjct: 63 KKPYRQKGTGNARQGSIRAPQFTGGGTVHGPQPRDYSQRTPKKMKVAALRGALSDRVRAG 122 Query: 122 DIMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ ++V E TK T R + +++ + + L+ RN+ N++L+ Sbjct: 123 QLHVVSHVVGGEQPSTKQARTAVRTWTEAKRVLVVLNKSEETSWLSLRNLQNVHLIDPSQ 182 Query: 181 INVYDILRCSKLVLSKSAIE 200 +N YD+L +V +K+A E Sbjct: 183 LNTYDVLVNDDVVFTKAAFE 202 >gi|294674770|ref|YP_003575386.1| 50S ribosomal protein L4 [Prevotella ruminicola 23] gi|294471640|gb|ADE81029.1| ribosomal protein L4 [Prevotella ruminicola 23] Length = 209 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ ++ G ++++E IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNIKCQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G ARH + RGGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARHGDINSPLLRGGGRVFGPTPRDYGFKLNKKVKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-------LDRNFQLAARNIPNI 173 N I+V+++ + KTK + +++ L +DG + + N L+ARN+ Sbjct: 121 NAIVVVEDFTMEAPKTKEFI------NIAKNLKVDGKKTLFVMSGTNNNVYLSARNLQGT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y +L LV+++ A+E ++ Sbjct: 175 EVMEASLVNTYKVLNADALVITEKALETID 204 >gi|15639183|ref|NP_218629.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025423|ref|YP_001933195.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14] gi|6094081|sp|O83220|RL4_TREPA RecName: Full=50S ribosomal protein L4 gi|226731440|sp|B2S2D7|RL4_TREPS RecName: Full=50S ribosomal protein L4 gi|3322454|gb|AAC65175.1| ribosomal protein L4 (rplD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017998|gb|ACD70616.1| ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14] gi|291059597|gb|ADD72332.1| ribosomal protein L4/L1 family [Treponema pallidum subsp. pallidum str. Chicago] Length = 216 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 107/206 (51%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V +++G + + E +F L +G++ + + KR+G + +KGRSEV + Sbjct: 1 MEKTVYSVEGVALRSVELDESVFGLSVNRGVIYYAINSELSNKRLGTACTKGRSEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P +ALPKKV+ LA++ LS K + Sbjct: 61 TKPYKQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFHYALPKKVKRLAMKSLLSLKAQGD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++ + KT+ L+ R + D + A RNIP ++ L + Sbjct: 121 ALTVIEDFTVESGKTRDLIQVLRHFAQRERTVFILQNDDALLKRAGRNIPTLSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 +D+ K+++ ++A+ + D ++ Sbjct: 181 RAHDLFYGRKVLVLETAVHKIADFYR 206 >gi|212695304|ref|ZP_03303432.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855] gi|237711674|ref|ZP_04542155.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA] gi|237725884|ref|ZP_04556365.1| 50S ribosomal protein L4 [Bacteroides sp. D4] gi|265753094|ref|ZP_06088663.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA] gi|212662214|gb|EEB22788.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855] gi|229435692|gb|EEO45769.1| 50S ribosomal protein L4 [Bacteroides dorei 5_1_36/D4] gi|229454369|gb|EEO60090.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA] gi|263236280|gb|EEZ21775.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA] Length = 208 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+++++ + KTK V+ L +++ L++ + ++N L+ARNI N+ Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKITDKKLLLVLPEANKNVYLSARNIERANVAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y++L LV+++++++A+E+ Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIEN 205 >gi|302523994|ref|ZP_07276336.1| ribosomal protein L4/L1 [Streptomyces sp. AA4] gi|302432889|gb|EFL04705.1| ribosomal protein L4/L1 [Streptomyces sp. AA4] Length = 229 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ G+ G + + +IF ++ ++ +V+ Q R G +K R EV+ Sbjct: 1 MTSVELKTPAGKADGTVELPGEIFDVQANVALMHQVVVGQLAAARQGTHDTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYTQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA---ARNIPNINLLP 177 + V+ LV+ E + A ++ L R+ +LA ARN+P ++L+ Sbjct: 121 GQLHVVTELVTGEKPSTKAAKTAIAAATQAKRVL--VVLHRDEELAWVSARNLPYVHLIW 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A +A Sbjct: 179 ADQLNTYDVLVNDDVVFTKAAYDAF 203 >gi|189501653|ref|YP_001957370.1| 50S ribosomal protein L4 [Candidatus Amoebophilus asiaticus 5a2] gi|226730610|sp|B3EUM2|RL4_AMOA5 RecName: Full=50S ribosomal protein L4 gi|189497094|gb|ACE05641.1| hypothetical protein Aasi_0196 [Candidatus Amoebophilus asiaticus 5a2] Length = 210 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV G+D G + +S+ IF + P + ++ KR G KSK R E+A + Sbjct: 1 MELSVLQYTGKDTGRKVVLSDTIFGITPNDHAIYLDVKNILANKRQGTHKSKERGEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + AL+ K Sbjct: 61 TKKIKKQKGTGTARAGSIKSPIFRGGGRVFGPKPRDYGFKLNKKLKKLARKSALTYKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 +I V+++ + KTK + + L++++ LI+ D+N LA+RN+PN ++ Sbjct: 121 GNISVLEDFSFEMPKTKMYLEMLQNLNMADQKTLLILPAV--DKNLVLASRNLPNTSVAL 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V+ IN YD+L K+++S++A+ L + F Sbjct: 179 VEQINTYDLLYSKKILISETALSKLTENF 207 >gi|150003386|ref|YP_001298130.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482] gi|254881323|ref|ZP_05254033.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA] gi|294777822|ref|ZP_06743266.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510] gi|319640325|ref|ZP_07995050.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A] gi|166234635|sp|A6KYJ4|RL4_BACV8 RecName: Full=50S ribosomal protein L4 gi|149931810|gb|ABR38508.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482] gi|254834116|gb|EET14425.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA] gi|294448276|gb|EFG16832.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510] gi|317388100|gb|EFV68954.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A] Length = 208 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+++++ + KTK V+ L +++ L++ + ++N L+ARNI N+ Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKIADKKLLLVLPEANKNVYLSARNIERANVAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y++L LV+++++++A+E+ Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIEN 205 >gi|308178135|ref|YP_003917541.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117] gi|307745598|emb|CBT76570.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117] Length = 200 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K RSEV+ G K + QKGTGRAR Sbjct: 7 VELPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKDRSEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KEC 134 S GGG GP P PKK+++ ALR ALSD+ + + VI+NLV+ K Sbjct: 67 SIRAPHMTGGGIVHGPTPRDYSQRTPKKMKAAALRGALSDRARFDRVHVIENLVAGDKPS 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA---RNIPNINLLPVQGINVYDILRCSK 191 L T + N L++ +DR +AA RN+ N+++L V +N YD+L Sbjct: 127 TKDALATLRSVTERKNLLVV----IDRANDVAALSVRNLVNVHVLYVDQLNTYDVLVSDD 182 Query: 192 LVLSKSAIEAL 202 +V +K+A +AL Sbjct: 183 VVFTKAAFDAL 193 >gi|227505215|ref|ZP_03935264.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940] gi|227198189|gb|EEI78237.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940] Length = 220 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ +G+ G + + +IF + ++ +V+ Q R G K+K R EV G Sbjct: 4 LKLDVQTAEGKTNGSVELPAEIFDTEASIALMHQVVNAQLAAARQGTHKAKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG + GPVP PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGISHGPVPRDYSQRTPKKMIKAALFGALSDRARNE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV + + F R + N L++ G + D N + +A N+PN+ +L Sbjct: 124 RIHVIEELVPGQTPSTKAAKAFIERLTERKNVLLVVGRE-DINARRSANNLPNVQILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ Sbjct: 183 QLNTYDVLYSDDVVFSVEALHTF 205 >gi|156312293|ref|XP_001617803.1| hypothetical protein NEMVEDRAFT_v1g156663 [Nematostella vectensis] gi|156195877|gb|EDO25703.1| predicted protein [Nematostella vectensis] Length = 209 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 113/208 (54%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S ++F ++P + ++ KR G KSK R+E+ + Sbjct: 1 MKVAVLDITGKDTGRKVELSSEVFGIEPNSHAIYLDVKQHLANKRQGTHKSKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSTQAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+++V++N KTK V +AL L N +L + + + N L++RN+ + ++ Sbjct: 121 NNLVVVENFDFDAPKTKNFVNVLKALGLENKKSLFVL-AESNNNVYLSSRNLKSSKVVNA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +L +K+V + AIE +E F Sbjct: 180 SELSTYSVLNANKVVFMEGAIEGVEANF 207 >gi|291286313|ref|YP_003503129.1| 50S ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809] gi|290883473|gb|ADD67173.1| ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809] Length = 208 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV-AY 59 M V+N+ E G I +S++I + + ++ V+ Q +R G + R+++ Sbjct: 1 MATFDVKNVKNETVGTIDLSDEIMSYPVKSSLMHEVVIMQLANRRAGTHSTLNRAKMKGG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G+K + QKGTGRAR S+ +RGG FGP P +++PKK AL+ A+ K Sbjct: 61 RGAKPWRQKGTGRARSGSRKSPIWRGGATCFGPQPRDYSYSMPKKKIKNALKSAIRAKTE 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + ++D L + KTK V + ++I +LD A RNIP ++LL V Sbjct: 121 AGAVHILDALSVENGKTKEAVEILKNFAADRKVLIVFKELDDKAVCAFRNIPYVDLLDVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 G+NVYD++ +++ K A+E +++ Sbjct: 181 GLNVYDVINSRTILVCKDAVERIQE 205 >gi|118616572|ref|YP_904904.1| 50S ribosomal protein L4 [Mycobacterium ulcerans Agy99] gi|166234692|sp|A0PM64|RL4_MYCUA RecName: Full=50S ribosomal protein L4 gi|118568682|gb|ABL03433.1| 50S ribosomal protein L4, RplD [Mycobacterium ulcerans Agy99] Length = 224 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 3/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V+ DG+ G + + ++F + ++ +V+ Q R G +K R +V+ G Sbjct: 12 LEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGG 71 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 72 RKPYRQKGTGRARQGSTRTPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNG 131 Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I + LV+ + + F A D L++ G + D+ + RN+P +++L Sbjct: 132 RIHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIG-RDDQTGVKSVRNLPGVHILSPD 190 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 191 QLNTYDVLRADDVVFSVEALNA 212 >gi|294507052|ref|YP_003571110.1| 50S Ribosomal protein L4 [Salinibacter ruber M8] gi|294343380|emb|CBH24158.1| 50S Ribosomal protein L4 [Salinibacter ruber M8] Length = 215 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + DG + G ++ +F ++P I+ ++ +R G SK+K R EV + Sbjct: 1 MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K+Y QKGTG AR RGGG+A G P H L +K + LA R ALS K + Sbjct: 61 GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I VI+N T+ L F L + +++ +++R L+++N+P++N+ VQ Sbjct: 121 ENIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 IN DIL ++L + A++ L D Sbjct: 181 SINTVDILDADVVLLQEGALDWLTD 205 >gi|310829584|ref|YP_003961941.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612] gi|308741318|gb|ADO38978.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612] Length = 206 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G G + +SE +F ++P + ++ V+ KR G + RSEV Sbjct: 1 MPKMDILDVKGNVVGDVELSERVFGIEPNEPVVHEVVVALLANKRQGTKGTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG F P + KKVR+LA+R S K Sbjct: 61 GRKPWRQKGTGRARAGTSRSPLWIGGGVIFAPKSRDYSKKVNKKVRNLAMRSVFSAKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D L KTK +V A++ ALI+ + D +A NI + V Sbjct: 121 NELRVLDQLTMDAPKTKEMVGILSAINAPKALIVT-AEKDDAVVRSANNIQKVATTTVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ LV++K A+E +E+ + Sbjct: 180 LNVYDMLKYDVLVMTKDALEKIEEVY 205 >gi|145225624|ref|YP_001136302.1| 50S ribosomal protein L4 [Mycobacterium gilvum PYR-GCK] gi|315445977|ref|YP_004078856.1| 50S ribosomal protein L4P [Mycobacterium sp. Spyr1] gi|145218110|gb|ABP47514.1| LSU ribosomal protein L4P [Mycobacterium gilvum PYR-GCK] gi|315264280|gb|ADU01022.1| LSU ribosomal protein L4P [Mycobacterium sp. Spyr1] Length = 218 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 3/193 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + +F +P ++ +V+ Q KR G +K R+ V+ G K Y QKGT Sbjct: 13 GKKDGTVELPAALFDAEPNIALMHQVVTAQLAAKRQGTHATKTRAMVSGGGKKPYRQKGT 72 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+ + ALR ALSD+ ++ I I +V Sbjct: 73 GRARQGSTRAPQFTGGGVVHGPQPRDYSQRTPKKMIAAALRSALSDRARNDRIHAITEVV 132 Query: 131 SKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + + F A D L++ G + D L+ RN+P ++++ +N YD+L+ Sbjct: 133 EGQSPSTKSAKAFLATLTDRKQVLVVIG-RADETSALSVRNLPGVHVISPDQLNTYDVLK 191 Query: 189 CSKLVLSKSAIEA 201 +V S A+ A Sbjct: 192 ADDVVFSVEALNA 204 >gi|198274002|ref|ZP_03206534.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135] gi|198273080|gb|EDY97349.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135] Length = 209 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 113/205 (55%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGKKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKVLARKSALAYKAQT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L ++ L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV+++SA++A+E+ Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEE 205 >gi|300865403|ref|ZP_07110208.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506] gi|300336586|emb|CBN55358.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506] Length = 211 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VRN GE+ G ++ + + I+ R LR Q R G + +K R+EV Sbjct: 1 MVNCVVRNWQGEEVGETTLELRVAKEENASHIVHRALRRQMVNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG +FGP P + KK R LALR AL + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVSFGPKPRDFDIKMNKKERRLALRTALQSR-AA 119 Query: 121 NDIMVIDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D +V+++ + KTK L+T R+ A S L+I + N L+ RN+P + + Sbjct: 120 EDFIVVEDFSEQIARPKTKELITALARWGANPESRILLIL-PEKQENIYLSGRNVPTLKI 178 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL K+V + +AI +++ + Sbjct: 179 ILAGSLNIYDILAADKIVTTATAIAKMQEVY 209 >gi|326385098|ref|ZP_08206768.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395] gi|326196183|gb|EGD53387.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L VRN DG + G + + ++F + ++ +V+ Q R G +K R +VA G Sbjct: 9 LTLDVRNADGTNNGTVDLPAELFDVTANIALMHQVVVAQQAAGRQGTHSTKTRGQVAGGG 68 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR S QF GGG GP P + KKV++ ALR ALSD+ + Sbjct: 69 AKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYTQKVNKKVKAAALRGALSDRARNE 128 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNI-NLLPV 178 I V+ LV+ + + +F L D L++ + R A + + N+ N+LP+ Sbjct: 129 RIHVVTELVAGQTPSTKAARKFLELLSDRRKFLVV----VSREDVTAWKGVANLGNVLPI 184 Query: 179 --QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L ++V S + A Sbjct: 185 APDQLNTYDVLDSDEVVFSVETLNAF 210 >gi|297192702|ref|ZP_06910100.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC 25486] gi|197721643|gb|EDY65551.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 4 MSTIDILSPAGDKSGTVELPAEIFDAKVSIPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ Sbjct: 64 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARH 123 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 124 SRIHVVSGVVEGEVSTKAAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEPGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 184 LNTYDVLVSDDVVFTKAAFESF 205 >gi|254456203|ref|ZP_05069632.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp. HTCC7211] gi|207083205|gb|EDZ60631.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp. HTCC7211] Length = 207 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 118/207 (57%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++DG+ K I V + IF+ K +++ VL + + +K+K ++EV+ Sbjct: 1 MKLEKFSIDGK-KDTIEVLDKIFSAKINSKLVSSVLYKTNANYKGRHAKTKQQNEVSGPT 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119 SK+Y QKGTG ARH+S+ F GGG A GP + L K + L++ +++K Sbjct: 60 SKIYAQKGTGGARHASRKAPIFVGGGIAHGPKGELAYKKRKLNKNEKKLSVASLITEKNK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++++ S+ KTK + + L++SN+LII + +ARNIPN+ + V Sbjct: 120 HKNLLILNDFSSEIKKTKEMNAIIQKLEISNSLIILDKSSKEKIEKSARNIPNVKVTDVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDI++ K+V ++S+++ LE R+ Sbjct: 180 HFSSYDIIKFKKVVFTESSVKELEKRY 206 >gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio] gi|82192851|sp|Q503X2|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio] Length = 302 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D + GV+ + D+F++ + IL V WQ KRI + K R+EV G K + QK Sbjct: 82 DSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKR 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 TGRARH S +RGGG GP P + LP KVR L+ ALS K + + ++D+ Sbjct: 142 TGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDS 201 Query: 129 LVSKECKTKYLVTRFRALDLSNA-LIID-GCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L +YL + ++ LI+D G + +N A ++ +N++P G+NV+ + Sbjct: 202 LEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSL 261 Query: 187 LRCSKLVLSKSAIEALEDRF 206 L+ LVL+ A++ LE + Sbjct: 262 LKHESLVLTLEAVKFLEKKL 281 >gi|258651364|ref|YP_003200520.1| 50S ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233] gi|258554589|gb|ACV77531.1| ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233] Length = 248 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 1/201 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G + + ++IF + ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVQITDPAGAAGATVELPDEIFNVPANVPLMHQVVVAQLAAARQGTHKAKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP+P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPLPRDYTQRTPKKMKAAALRGALSDRARG 120 Query: 121 NDIMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ V+++L V TK + ++ + +++ D + RN+PN++LL Sbjct: 121 GNVHVLESLSVDGTPSTKKALGALHSVSTARKILVVLQFGDEIGWKSLRNVPNVHLLWAG 180 Query: 180 GINVYDILRCSKLVLSKSAIE 200 +N YD+L +V +++A+E Sbjct: 181 QLNTYDVLDSDDVVFTRAALE 201 >gi|296120748|ref|YP_003628526.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776] gi|296013088|gb|ADG66327.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776] Length = 209 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 1/159 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G KSK R+E+A + K++ QKGTGRAR +K RGGG AF P + LP+K Sbjct: 46 RQGTFKSKSRAEIAGSKQKLFKQKGTGRARQGNKRQPVRRGGGHAFAKRPTDFSYRLPRK 105 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNF 163 LA R AL KF N++ +I++L + KTK + + L L S +I D N Sbjct: 106 ALQLATRMALLGKFQDNEVTIIESLALEAPKTKVVASLLNKLGLESKGCLISIPSHDSNV 165 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +ARNIP + + P G+N Y +L +LV++ A++ L Sbjct: 166 WKSARNIPKVGVSPAAGLNAYQLLLRKQLVVTTDALDLL 204 >gi|313206394|ref|YP_004045571.1| LSU ribosomal protein l4p [Riemerella anatipestifer DSM 15868] gi|312445710|gb|ADQ82065.1| LSU ribosomal protein L4P [Riemerella anatipestifer DSM 15868] gi|315023665|gb|EFT36669.1| LSU ribosomal protein L4p (L1e) [Riemerella anatipestifer RA-YM] gi|325336161|gb|ADZ12435.1| Ribosomal protein L4 [Riemerella anatipestifer RA-GD] Length = 209 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 112/209 (53%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G++ G +S+ E IF ++P Q + ++ +R G K+K RSE+ + Sbjct: 1 MELVVLNIQGKETGRKVSLDEAIFGIEPNQHAVYLEIKQYLAAQRQGTHKAKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ F+GGG+ FGP P L K ++ LA + LS K Sbjct: 61 TKKLKKQKGSGSARYGDIKSPVFKGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 N++ V+++ + KTK + AL L +L + G + ++N L++RN+P ++ Sbjct: 121 NNVKVLEDFSFETPKTKEFINVVNALGLEGKKSLFVLG-EANKNVYLSSRNLPKAKVMNF 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ YD++ ++V + A+E ++ + Sbjct: 180 NEISSYDLVNAGEVVFLEGAVEKFQENLR 208 >gi|38233086|ref|NP_938853.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae NCTC 13129] gi|46577152|sp|P61062|RL4_CORDI RecName: Full=50S ribosomal protein L4 gi|38199345|emb|CAE48978.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae] Length = 217 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G+ G + + +IF + +L +V+ Q KR G +K R+EV+ G Sbjct: 4 LKLDVLTAEGKTDGQVELPAEIFDREASVALLHQVVNAQLAAKRQGTHSAKTRAEVSGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG + GP P PKK+ AL AL+D+ Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALFGALTDRARHE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV+ + + F R D N L++ G + D Q +ARN+P +++L Sbjct: 124 RIHVISELVAGQTPSTKSARSFIERITDRRNVLLVVGRE-DVTAQKSARNLPGVHILFAD 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 183 QLNTYDVLYSDDVVFSVEALNTFINR 208 >gi|3122740|sp|O06114|RL4_MYCSM RecName: Full=50S ribosomal protein L4 gi|2113890|emb|CAA73669.1| ribosomal protein L4 [Mycobacterium smegmatis] Length = 215 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 1/202 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ G + + ++F ++P ++ +V+ Q KR G +K R EV+ Sbjct: 2 TLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGG 61 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKG+GRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 62 GKKPYRQKGSGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 121 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I + LV + TK T L + +++ + D + RN+P ++++ Sbjct: 122 DRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPD 181 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V S A+ A Sbjct: 182 QLNTYDVLNADDVVFSVEALNA 203 >gi|291537925|emb|CBL11036.1| LSU ribosomal protein L4P [Roseburia intestinalis XB6B4] Length = 198 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 1/198 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 ++G++ G + +++ +F ++ + ++ + Q R G K+K RSEV G K + QK Sbjct: 1 MEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRKPWRQK 60 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG AR S Q+ GG F PVP L KK + AL+ AL+ + + +V+D Sbjct: 61 GTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKFIVVDE 120 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L KTK V L + AL++ +D N +A N+P + +NV+D+L+ Sbjct: 121 LKLDSIKTKNFVQVLNNLKVEKALVVLN-DMDTNVIKSASNVPTVKTAQTNELNVFDVLK 179 Query: 189 CSKLVLSKSAIEALEDRF 206 +V++K A++ +E+ + Sbjct: 180 YDTVVVTKDAVKTIEEVY 197 >gi|152964658|ref|YP_001360442.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216] gi|151359175|gb|ABS02178.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216] Length = 234 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 I + +R DG G + + F + ++ +V+ Q R G +K R EV G Sbjct: 11 ITVPLRTADGGSNGTVELPAKDFGRQANISLIHQVVTAQLAAARQGTHSTKRRGEVRGGG 70 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 71 KKPYKQKGTGRARQGSLRAPQFTGGGIVHGPKPRDYSQRTPKKMKAAALRGALSDRVRHE 130 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L + E TK L +++ + D Q + RN+ N+++LP Sbjct: 131 RLHVVEGLAAGETPSTKTARALIATLSGRKNVLVVLTRDDDVSQKSLRNLDNVHVLPADQ 190 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+++ +V +++A++A Sbjct: 191 LNTYDVVKSDDVVFTRAALDAF 212 >gi|111220547|ref|YP_711341.1| 50S ribosomal protein L4 [Frankia alni ACN14a] gi|111148079|emb|CAJ59747.1| 50S ribosomal protein L4 [Frankia alni ACN14a] Length = 236 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 +SV +G D G + +F + ++ +V+ Q R G +K R EV G K Sbjct: 18 VSVHAPNGGDGGSAELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGRK 77 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N + Sbjct: 78 PYRQKGTGRARQGSLRAPQFTGGGVVHGPTPRSYDQRTPKKMKAAALRGALSDRARNNRV 137 Query: 124 MVIDNLVSKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ +LVS E TK VT R + + +++ + D + RN+ ++LL +N Sbjct: 138 HVVSSLVSGEAPSTKAAVTALRTVADTRRVLVVASRTDELTWKSLRNVAAVHLLDPGQLN 197 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V ++ A+ A Sbjct: 198 TYDVLVSDDVVFTEEALAAF 217 >gi|193214801|ref|YP_001996000.1| 50S ribosomal protein L4 [Chloroherpeton thalassium ATCC 35110] gi|226730640|sp|B3QY25|RL4_CHLT3 RecName: Full=50S ribosomal protein L4 gi|193088278|gb|ACF13553.1| ribosomal protein L4/L1e [Chloroherpeton thalassium ATCC 35110] Length = 210 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N DG + G + + IF ++P + +R + G K K RSEV+ Sbjct: 1 MEVKVLNKDGAETGETVELKPVIFEIEPNDHAIYLDVRSIMANQHQGTHKVKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P V + KK++ LA ALS K + Sbjct: 61 GRKPYRQKGTGNARRGSSRSPVMIGGGAIFGPKPHDYVVGINKKMKRLARISALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+I+V+++ V E KTK +V+ ++L L+ L++ + D ++ + RNI +++L Sbjct: 121 NEIIVMEDYVPSEIKTKEVVSFLKSLGLNEKKTLLLMPSKNDVMYK-SGRNISKLSILEA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 + YD+L L++ KSA+E LE Sbjct: 180 NKASTYDLLNNKTLLIQKSALETLE 204 >gi|206891119|ref|YP_002249244.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii DSM 11347] gi|226731439|sp|B5YG46|RL4_THEYD RecName: Full=50S ribosomal protein L4 gi|206743057|gb|ACI22114.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 210 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIE+ +R+++ G V + +F + ++ + +R G +K RSEV+ Sbjct: 1 MIEIEIRDINNNIVGKKEVPDIVFNNSASESVVHTAVVAYMANQRQGTHCTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG FGP P LPK+++ AL AL+ K+ Sbjct: 61 GKKPWRQKHTGRARHGSIRSPLWRKGGIVFGPKPRDYYIQLPKQMKDTALFKALTMKYRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+++DNL KTK +V + L L ++++I + D L+ARNIP I ++ + Sbjct: 121 NEILLLDNLSLNRIKTKDMVEILKNLQLEESSVLIALPEKDEKVLLSARNIPYIGVVRAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + K+V + + ++ L Sbjct: 181 DLNAYHVAMFDKVVFTVAGLDKL 203 >gi|78221847|ref|YP_383594.1| 50S ribosomal protein L4 [Geobacter metallireducens GS-15] gi|109893597|sp|Q39Y05|RL4_GEOMG RecName: Full=50S ribosomal protein L4 gi|78193102|gb|ABB30869.1| LSU ribosomal protein L4P [Geobacter metallireducens GS-15] Length = 220 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 3/204 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++ G + +S+ +F ++ ++ ++ Q +R G K R+ V+ Sbjct: 14 MATIDVFDINKNKVGEMDLSDAVFNGDVREYLIHEAVKVQLANRRAGTVGVKNRAAVSGG 73 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + GGG AFGP ++ KK R A+R ALS F Sbjct: 74 GKKPFKQKGTGQARQGCIRAPHYVGGGVAFGPQAKTYALSMNKKARKAAVRSALSMLFKE 133 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V+D L TK V + D++ L IID + + N +L+ARN+ ++ +L + Sbjct: 134 NKLSVLDCLSLPSISTKGFVGVLKTFDVTKTLVIID--EANTNLELSARNVKDVKVLKAE 191 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +NV+DI++ + ++L++SA+ +E Sbjct: 192 HLNVFDIVKFNNIILTQSAVRKIE 215 >gi|119358190|ref|YP_912834.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides DSM 266] gi|166234653|sp|A1BJ33|RL4_CHLPD RecName: Full=50S ribosomal protein L4 gi|119355539|gb|ABL66410.1| LSU ribosomal protein L4P [Chlorobium phaeobacteroides DSM 266] Length = 208 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V++++E+IF ++ + + ++ KR G K+K R++V Sbjct: 1 MELKVLNTSGTETGEVVTLNEEIFGVEVSEHAMYLDVKSILANKRQGTHKAKTRAQVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKLLARRSALSAKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+VI++ KTK + + L L +++ + D + RNIP +N++ Sbjct: 121 GKILVIEDFRLDAIKTKPVAEILKNLGLEQKKILMLTPEYDMIIARSGRNIPVLNIMTAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 ++ YDIL S ++ K+A+ +ED Sbjct: 181 KVSTYDILNSSAILFQKTALTKIED 205 >gi|284992873|ref|YP_003411427.1| 50S ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160] gi|284066118|gb|ADB77056.1| ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160] Length = 292 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ VR GE G +++ ++F ++ +V+ Q R G +K R +V+ G Sbjct: 17 QVDVRTPAGETSGSVTLPGELFDASANVSLMHQVVVAQLAAARQGTHATKTRGQVSGGGI 76 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ N Sbjct: 77 KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQKTPKKMKAAALRGALSDRARENR 136 Query: 123 IMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQL---AARNIPNINLLPV 178 + V+ V + +TK + ++ + +++ LDR+ L + RN+P ++LL Sbjct: 137 VHVVSTFVDGDAPRTKAALATLESITRAKRVLV---VLDRDDVLNWVSLRNVPQVHLLEA 193 Query: 179 QGINVYDILRCSKLVLSKSAI 199 +N YD+L ++V +++A+ Sbjct: 194 GQLNTYDVLVADEVVFTEAAL 214 >gi|113476578|ref|YP_722639.1| 50S ribosomal protein L4 [Trichodesmium erythraeum IMS101] gi|122964704|sp|Q110A8|RL4_TRIEI RecName: Full=50S ribosomal protein L4 gi|110167626|gb|ABG52166.1| LSU ribosomal protein L4P [Trichodesmium erythraeum IMS101] Length = 212 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G +++ + + I+ R LR Q R G + +K RSEV Sbjct: 1 MVDCVVKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P H + +K + LAL A + S Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRLALSTAFQSR--S 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D++VI++L + + KTK LV TR+ +D+ +++ + N L+ RNI + + Sbjct: 119 EDLIVIEDLSEQFTKPKTKELVQAITRW-GIDIQAKIVLVLPEKQENVYLSGRNIAKLKI 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL K++ + +AI +++ + Sbjct: 178 ILANNLNIYDILAADKIIATVTAIAKIQEVY 208 >gi|218440624|ref|YP_002378953.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7424] gi|226730648|sp|B7KHY8|RL4_CYAP7 RecName: Full=50S ribosomal protein L4 gi|218173352|gb|ACK72085.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7424] Length = 210 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 8/204 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V+N G++ G S+ + + IL R + R G + +K R+EV Sbjct: 1 MVNCVVKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL+ K + Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALNSK--A 118 Query: 121 NDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 ++++++N + + KTK L +TR+ + L+I ++ N L+ARNI N+ L Sbjct: 119 ENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLIL-SEIPENISLSARNICNVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAI 199 + INVYDIL SKLV + A+ Sbjct: 178 IRADSINVYDILSASKLVATSDAL 201 >gi|298491399|ref|YP_003721576.1| 50S ribosomal protein L4/L1e ['Nostoc azollae' 0708] gi|298233317|gb|ADI64453.1| ribosomal protein L4/L1e ['Nostoc azollae' 0708] Length = 210 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G S + + I+ R L Q R G + +K RSEV Sbjct: 1 MVESVVKNWQGEQVGETSFDLRVAKQETAAHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNLKLNRKERRLALRTAFVSR--A 118 Query: 121 NDIMVIDNLVS--KECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D++V++ + + KTK LV R+ A +L+I ++ N L+ARNI N+ L Sbjct: 119 EDLIVVEEFSNELQRPKTKDLVAALARWGAAQEQKSLLIL-SEIAENVLLSARNIENLKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NVYD+L K+V++ +A+E +++ + Sbjct: 178 IAADQLNVYDLLHADKIVVTPAALEKIQEVY 208 >gi|254995178|ref|ZP_05277368.1| 50S ribosomal protein L4 [Anaplasma marginale str. Mississippi] gi|255003352|ref|ZP_05278316.1| 50S ribosomal protein L4 [Anaplasma marginale str. Puerto Rico] gi|255004476|ref|ZP_05279277.1| 50S ribosomal protein L4 [Anaplasma marginale str. Virginia] Length = 178 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 6/178 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L V+ WQ ++R G K++ S+V+ T +K Y QK TGRAR S QFRGG FG Sbjct: 1 MLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRARQGSLRSPQFRGGAVVFG 60 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN---LVSKECKTKYLVTRFRALDL 148 PV ++L KKVR L L+ ALS K + ++V+D+ L+ K F A Sbjct: 61 PVNRSHAYSLNKKVRRLGLKVALSMKVSDSKLVVLDDSGLLLEKTADAHVAFGNFGA--- 117 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++ + A RN+PN++LL GINV DILR ++L+ ++ LE R Sbjct: 118 HGSYLVVAETYEDKVMCACRNLPNVDLLKYAGINVLDILRHDCVILTVGTVKCLESRL 175 >gi|225873077|ref|YP_002754536.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196] gi|254803706|sp|C1F641|RL4_ACIC5 RecName: Full=50S ribosomal protein L4 gi|225791588|gb|ACO31678.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196] Length = 222 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 11/214 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRK-----RIGCSKSKGRS 55 M + V +L G+ G + +++++FA P + + L W++ + R G +K + Sbjct: 1 MANVDVLDLGGKKVGSLELADELFA--PSE--VNEALLWEAVKHYRASLRQGTHATKNKK 56 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ +G K++ QKGTGRAR S +R GG GP P +A PKK ALR AL+ Sbjct: 57 LVSGSGKKLWKQKGTGRARVGSVRSPLWRHGGTVHGPQPRSYDYAFPKKKLMGALRSALA 116 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNI 173 K ++V+++ E KTK T L+ + + L+++ Q L N L ARN+ N+ Sbjct: 117 AKLADGKLIVVESFEVSEPKTKLYRTALDKLEANRSTLLVESSQSLTENLYLGARNLANV 176 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ ++ YD+LR + + S++AIE L++ + Sbjct: 177 ELVLNNEVHPYDLLRYERAIFSRAAIEKLQESLQ 210 >gi|315606503|ref|ZP_07881518.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC 33574] gi|315251909|gb|EFU31883.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC 33574] Length = 210 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 117/212 (55%), Gaps = 14/212 (6%) Query: 1 MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+E+SV ++ G++ G ++++E I+ L+P + +L ++ +R G +KSK RSE+ Sbjct: 1 MMEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEING 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K+ QKG G AR GGG+ FGP P L KKV+ LA + ALSDK Sbjct: 61 STRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPN 172 N I+V+++ + KTK + +++ L +DG + ++N L+ARN+ Sbjct: 121 ENAIVVVEDFDIETPKTKDFI------NIAKNLKVDGRKTLLLLPTANKNVYLSARNLQR 174 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++P +N Y +L LV+++SA++ +++ Sbjct: 175 TEVMPAAMLNSYKVLNADVLVIAESALKVIDE 206 >gi|310779595|ref|YP_003967928.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926] gi|309748918|gb|ADO83580.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926] Length = 210 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL G+ G + V + +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGDQTGTLEVKDTVFGIEPNKAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR +AL+ ALS K Sbjct: 61 GRKPFKQKGTGRARQGSTRAPHMVGGGVTFGPQPRSFEKKVNKKVRKVALKSALSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQ--LAARNIPNINLL 176 I+V+D + + KTK ++ +AL+ + +++ D +F L+ARN+ N +L Sbjct: 121 GSIVVLDGAI-EAPKTKTIMALTKALEANTKQLFVVNDLANDADFNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 + VY +L+ +K++++K A+ +E+ Sbjct: 180 QPNELGVYWLLKQNKVIITKEALATIEE 207 >gi|325299131|ref|YP_004259048.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170] gi|324318684|gb|ADY36575.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170] Length = 209 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GE+ G + +++ IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGENTGRTVVLNDAIFGITPNDHAIYMAVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYSFKLNKKVKLLARKSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L ++ L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFETPKTKDFVNVVNNLKVAGKKLLVVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV++++A++A+E+ Sbjct: 181 ALNTYTVLNAETLVVTENALKAIEE 205 >gi|322436545|ref|YP_004218757.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9] gi|321164272|gb|ADW69977.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 2/209 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V NL GE G + +++F + +L ++ R G + +K R V+ + Sbjct: 1 MANINVVNLGGEKVGEFDLLDEVFNAEINDALLWEAVKHYRAAMRQGTAATKVRKNVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P + PKK ALR A+S K Sbjct: 61 GKKLWKQKGTGRARVGSIRTPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSAISAKIQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++D+ E KTK L+ + L+ +L+ L +RN+ + L+ Sbjct: 121 GKFTIVDSFEVPEAKTKLYRQALTKLETGKTTLLVESSRKLEEKLYLGSRNLQGVELVLS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+LR V SK AIEA+++ K Sbjct: 181 SEVHPYDLLRYEHAVFSKDAIEAIQETLK 209 >gi|298373699|ref|ZP_06983688.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274751|gb|EFI16303.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 212 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E V N+ G++ G + +++ +F ++P + ++ KR G KSK RSE+A + Sbjct: 1 MEAKVFNIQGKETGRTVQLNDSVFGIEPNNHAIYLDVKQYMANKRQGTHKSKERSEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK++ LA + A + K Sbjct: 61 TKKLGRQKGGGGARRGDINSPLLHGGARVFGPKPRDYSFKLNKKLKQLARKSAFATKAAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 N I+V+++ + KTK V L +++ L+I G + ++N L++RN+P +N++ Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAITNNLKINDKKILLILG-ENNKNIFLSSRNLPKVNVITT 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y IL C+ L++S+ A+ ++ FK Sbjct: 180 DELSTYKILDCAVLLISEKAVAGIDQHFK 208 >gi|331703715|ref|YP_004400402.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384085|gb|ACU78655.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri str. GM12] gi|256384917|gb|ACU79486.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri str. GM12] gi|296455249|gb|ADH21484.1| ribosomal protein L4/L1 family [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802270|emb|CBW54424.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 208 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 117/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V ++ G + I++++ ++ ++P QQ I V+ Q+ R G K K R+EV+ Sbjct: 1 MKLQVLDIKGNEVKEIALNDYVWGIEPHQQAIYDTVISQQA-ALRQGTKKVKTRAEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q++GGG FGP P I ++ KKVR+LA R LS K Sbjct: 60 GRKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++++D + TK +V + L D LI+ + + + ++ NI + + Sbjct: 120 ENNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVK-SSNNITGVKTIS 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 179 ANQLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|91216909|ref|ZP_01253873.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755] gi|91185070|gb|EAS71449.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755] Length = 209 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 118/207 (57%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++SV ++ G++ G + +SE +F L+P ++ ++ KR G K+K R+E+ + Sbjct: 1 MKVSVLDIKGKETGREVELSESVFGLEPNDHVVYLDVKQHLANKRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + LS K + Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRVFGPRPRDYHFKLNKKLKRLARKTVLSQKLKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N +M++++ + KTK + L++ + +++D + ++N L++RN+ ++ Sbjct: 121 NQLMIVEDFGFEAPKTKEFLNLLDNLNIRDKKSLIVLD--ESNKNVYLSSRNLKTAKVVN 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 V +N Y+I+ + L++S+S ++ L++ Sbjct: 179 VSELNTYNIMNSNFLLISESRLDELQN 205 >gi|75906915|ref|YP_321211.1| 50S ribosomal protein L4 [Anabaena variabilis ATCC 29413] gi|109893575|sp|Q3MFC0|RL4_ANAVT RecName: Full=50S ribosomal protein L4 gi|75700640|gb|ABA20316.1| LSU ribosomal protein L4P [Anabaena variabilis ATCC 29413] Length = 210 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTALVSRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +D+++++ ++ KTK LV TR+ A S L+I + N L+ARNI N+ L Sbjct: 119 DDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLIL-SEFPENVYLSARNIENLKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NVYD+L K+V++ SA+E +++ + Sbjct: 178 IAADQLNVYDLLHADKIVVTTSALEKIQEVY 208 >gi|86158368|ref|YP_465153.1| 50S ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C] gi|109893573|sp|Q2IJ86|RL4_ANADE RecName: Full=50S ribosomal protein L4 gi|85774879|gb|ABC81716.1| LSU ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C] Length = 206 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 ++++ + KT AL AL++D N LA RN+ + L V Sbjct: 121 QKLVIVQEWKPEGPKTAAAAKVLAALGAKKALVVDDAA---NLALARSVRNLAGSDFLAV 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +G+NVYDILR LVL+ + LE Sbjct: 178 EGLNVYDILRHDALVLTADTAKKLE 202 >gi|294790412|ref|ZP_06755570.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304] gi|294458309|gb|EFG26662.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304] Length = 219 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 11/209 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L V LDG + G ++ E+IF + + ++ +V+ Q R G K R+ Sbjct: 4 VSLKVTGLDGVEAGSVTAPEEIFGIAQDEVRTHIPLVHQVVVAQLAAARQGTHAVKNRAR 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 ++ G K + QKGTGRAR S QF GG GPVP PKK++ ALR+ LSD Sbjct: 64 ISGGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPKKMKQAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR---NFQLAARNIPNI 173 + + + V+D + + TK + AL+ A LDR N L+ RN+P + Sbjct: 124 RANAGRVHVVDFGLGDKPSTK---SALAALNPVVAQRFTTVVLDRENINEWLSVRNLPTV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++L +N YD++ LV +K +EA Sbjct: 181 HVLFADQLNTYDVVTAEDLVFTKEGLEAF 209 >gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis] gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis] Length = 298 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 83 GLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 142 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 143 HGSIRSPLFKGGGVVHGPRSPTSHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVEIPT 202 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +++ + + + LIID + N A + +NL+P G+NVY +L+ Sbjct: 203 RDAQFIKDLIQERNWGPSVLIIDKQDIFPENICYATDTLGYVNLMPAFGLNVYSMLKHDT 262 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A++ LE+R Sbjct: 263 LVLTVDAVKHLEERL 277 >gi|42561269|ref|NP_975720.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|46577155|sp|P61065|RL4_MYCMS RecName: Full=50S ribosomal protein L4 gi|42492767|emb|CAE77362.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320633|gb|ADK69276.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 208 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 117/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V ++ G + I++++ ++ ++P QQ I V+ Q+ R G K K R+EV+ Sbjct: 1 MKLQVLDIKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQA-ALRQGTKKVKTRAEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q++GGG FGP P I ++ KKVR+LA R LS K Sbjct: 60 GRKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++++D + TK +V + L D LI+ + + + ++ NI + + Sbjct: 120 ENNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVK-SSNNITGVKTIS 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 179 ANQLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica Group] Length = 288 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 1/145 (0%) Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + Sbjct: 138 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 197 Query: 123 IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+ Sbjct: 198 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 257 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY IL+ LV+++ A+ + +R Sbjct: 258 NVYSILQHDTLVMTRDAVNRIVERM 282 >gi|260579266|ref|ZP_05847150.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734] gi|258602618|gb|EEW15911.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734] Length = 217 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V DG+ G + + IF + ++ +V+ Q KR G +K R +V+ G Sbjct: 4 LKLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGQVSGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ N Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHN 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ LV + + F R D + L++ + D + N+P ++ L Sbjct: 124 RIHVVEELVPGQTPSTKAARTFIERLTDRKSVLVV-LTREDVTAWKSVNNLPQVHTLVND 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 183 QLNTYDVLNADDVVFSVEALNAF 205 >gi|108797987|ref|YP_638184.1| 50S ribosomal protein L4 [Mycobacterium sp. MCS] gi|119867083|ref|YP_937035.1| 50S ribosomal protein L4 [Mycobacterium sp. KMS] gi|126433649|ref|YP_001069340.1| 50S ribosomal protein L4 [Mycobacterium sp. JLS] gi|122977349|sp|Q1BDA6|RL4_MYCSS RecName: Full=50S ribosomal protein L4 gi|166234689|sp|A3PVC2|RL4_MYCSJ RecName: Full=50S ribosomal protein L4 gi|166234690|sp|A1UBN7|RL4_MYCSK RecName: Full=50S ribosomal protein L4 gi|108768406|gb|ABG07128.1| LSU ribosomal protein L4P [Mycobacterium sp. MCS] gi|119693172|gb|ABL90245.1| LSU ribosomal protein L4P [Mycobacterium sp. KMS] gi|126233449|gb|ABN96849.1| LSU ribosomal protein L4P [Mycobacterium sp. JLS] Length = 219 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 3/200 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V+ G G + + ++F ++ ++ +V+ Q KR G +K R EV+ G K Sbjct: 5 IEVKTPAGTTDGSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + I Sbjct: 65 PYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRI 124 Query: 124 MVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + LV + + F + + L++ G + D + + RN+P ++++ + Sbjct: 125 HAVTELVEGQTPSTKSAKAFLSTLTERKQVLVVIG-RADETSERSVRNLPGVHIISPDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L+ +V S A+ A Sbjct: 184 NTYDVLKADDVVFSVEALNA 203 >gi|161611307|ref|YP_007412.2| 50S ribosomal protein L4 [Candidatus Protochlamydia amoebophila UWE25] Length = 227 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 20/222 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L NL G++ G +++ + ++ ++ + R + +K R+EV +T Sbjct: 1 MATLKKYNLAGKEIGQVNIDDTWLNVEANGQMIKDYIVALRANARQWSASTKTRAEVKHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKG GRARH S Q+RGGG+AFGP P H + KK R A+R LS+K Sbjct: 61 TKKAHPQKGQGRARHGSTVAPQYRGGGRAFGPRPKFDQHVRINKKERKAAIRFLLSEKLK 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------------------CQLD 160 N + +I++ KTK L R DL ++ G Sbjct: 121 ENKVWLIEDTAMDAPKTKTLAQFLRGFDLRGRVLFLGETTFTDVETEGKVQRVSISTDKH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +F + RN+P N + IN YD++ ++VL++SA+ L Sbjct: 181 NHFVKSMRNLPRANFMLASNINGYDVMIAREIVLTESALNEL 222 >gi|282860811|ref|ZP_06269877.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE] gi|282564547|gb|EFB70083.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE] Length = 216 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK + T F + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGGISTKAVKTLFGKISERSNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|195475362|ref|XP_002089953.1| GE19365 [Drosophila yakuba] gi|194176054|gb|EDW89665.1| GE19365 [Drosophila yakuba] Length = 296 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ ++ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDLIQENVEWQRKYRYVSMAHTKNRAEVRGGGRKPWPQKGGGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200 Query: 134 CKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + +L + +++I D N A+ ++ +NL+P G+NVY +L+ Sbjct: 201 RDSDFLKDLIAERNWGPSVLIVDDDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|296119210|ref|ZP_06837780.1| ribosomal protein L4/L1 family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967836|gb|EFG81091.1| ribosomal protein L4/L1 family protein [Corynebacterium ammoniagenes DSM 20306] Length = 221 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ +G+ G + + +IF + ++ +V+ Q R G +K R EV G Sbjct: 4 LKLDVQTAEGKTNGSVELPAEIFDAEVSIALMHQVVNAQLAAARQGTHSTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPKPRDYAQRTPKKMIKAALFGALSDRARNE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV+ + + F R D L++ G + D N + +A N+PN+++L Sbjct: 124 RIHVIEELVAGQTPSTKSAKAFIERLTDRKTILLVVGRE-DLNARRSANNLPNVHILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ + +R Sbjct: 183 QLNTYDVLNADDVVFSVEALHSFINR 208 >gi|300775015|ref|ZP_07084878.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC 35910] gi|300506830|gb|EFK37965.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 111/209 (53%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G++ G +++ E +F ++P Q + ++ +R G K+K RSE+ + Sbjct: 1 MELVVLNTSGKETGRKVTLDETVFGIEPNQHAVYLEVKQYLAAQRQGTHKAKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ FRGGG+ FGP P L K ++ LA + LS K Sbjct: 61 TKKLKKQKGSGSARYGDIKSPVFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V++++ KTK + AL+L+ +L + + ++N L++RN+P ++ Sbjct: 121 NSIKVLEDMSFAAPKTKDFINVLNALELNGKKSLFVL-PEANKNVYLSSRNLPKAKVMNF 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ YD++ +++ + A+E ++ K Sbjct: 180 NEISSYDLVNAGEIIFFEGAVEKFQENLK 208 >gi|320094579|ref|ZP_08026345.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978494|gb|EFW10071.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str. F0338] Length = 216 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V +L+G+ + + +IF + ++ +V+ Q R G +K R +V+ G K Sbjct: 9 VDVLDLEGKKAATVDLPAEIFDVPTNIPLMHQVVVAQLAAARQGTHSTKTRGQVSGGGRK 68 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG AR S QF GGG GP P PKK++ ALR ALSD+ ++ I Sbjct: 69 PFRQKGTGNARQGSIRAPQFTGGGVVHGPKPRDYEQRTPKKMKRGALRSALSDRARADRI 128 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAA---RNIPNINLLPV 178 V+ L + TK + RA+ D AL++ L+R QL A RN+P +++L V Sbjct: 129 HVVTALFEGDKPSTKAALASLRAIVDDRQALVV----LERGDQLTALSLRNVPEVHVLWV 184 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A+E+ Sbjct: 185 DQLNTYDVLDADDIVFTQAALESF 208 >gi|240167704|ref|ZP_04746363.1| 50S ribosomal protein L4 [Mycobacterium kansasii ATCC 12478] Length = 225 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ +G I + ++F + ++ +V+ Q R G +K R +V+ Sbjct: 5 TLKIDVKTPAGKVEGSIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGG 64 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 65 GRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 124 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I + LV+ + + F A D L++ G + D + RN+P +++L Sbjct: 125 GRIHAVTELVAGQTPSTKSAKTFLATLTDRKQLLVVIG-RDDETAAKSVRNLPGVHVLSP 183 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S +A+ A Sbjct: 184 DQLNTYDVLRADDVVFSVAALNA 206 >gi|91200668|emb|CAJ73719.1| strongly similar to 50S ribosomal protein L4 [Candidatus Kuenenia stuttgartiensis] Length = 203 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 5/204 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N +G+ + V + I + +L V++ KR G +K R+EV+ G Sbjct: 1 MEIIVYNDEGKKIENMQVPDSISDSPVRYKLLRDVVKMYEANKRQGTVSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TG+AR S +RGGG AFGP P +++PK + AL ALS K N Sbjct: 61 KKPWAQKHTGKARAGSSRSPIWRGGGVAFGPKPRDYSYSIPKMAKKQALFSALSSKIKDN 120 Query: 122 DIMVIDNLVSKECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D L KTK++V+ F + +S+ ++I + + ++RNIP + ++ Sbjct: 121 EVVVVDKLDFASPKTKHMVSLLKSFGMVGISSLIVI--SKATESLLKSSRNIPYVRMMEC 178 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N Y+IL+ K++++K A+ +L Sbjct: 179 HDLNAYEILKPKKILITKQALSSL 202 >gi|170077684|ref|YP_001734322.1| 50S ribosomal protein L4 [Synechococcus sp. PCC 7002] gi|169885353|gb|ACA99066.1| ribosomal protein L4 [Synechococcus sp. PCC 7002] Length = 210 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +V+N GE+ G ++ + + I+ R L Q R G S +K R+EV Sbjct: 1 MVNCAVKNWQGEEVGQANLDFKVAKEENAAHIVHRALVRQLNNARQGTSSTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S ++GGG FGP P + +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWKGGGVIFGPKPKEYNLKMNRKERRLALRTAFHSR--N 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D++V++N + KTK LV TR+ L++ D N L+ARNI ++ + Sbjct: 119 EDLIVVENFAEQFAAPKTKELVNAMTRWGVASGEKVLLVLAEMTD-NVYLSARNIASVKM 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+N++DIL K+V++ A+ +++ + Sbjct: 178 VPADGLNIFDILNAGKIVVTSEALAKIQEVY 208 >gi|311896569|dbj|BAJ28977.1| putative ribosomal protein L4 [Kitasatospora setae KM-6054] Length = 225 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPAGDKAGSLELPAEIFDAKVSVPLMHQVVVAQLAAARQGTHKVKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+ + ALR AL+D+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMIAAALRSALTDRARH 120 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+ + + E TK F + L++ + D L+ARN+PN+++L Sbjct: 121 ERIHVVTGVTATEAPSTKAAKVLFGKISERKNLLLVVEREDELGILSARNLPNVHILDAG 180 Query: 180 GINVYDILRCSKLVLSKSAIE 200 +N YD+L +V +++A E Sbjct: 181 QLNTYDVLVSDDVVFTQAAFE 201 >gi|197122340|ref|YP_002134291.1| 50S ribosomal protein L4 [Anaeromyxobacter sp. K] gi|226730611|sp|B4UBA0|RL4_ANASK RecName: Full=50S ribosomal protein L4 gi|196172189|gb|ACG73162.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. K] Length = 206 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 ++++ KT AL AL++D N LA RN+ + L V Sbjct: 121 QKLVIVQEWKPGAPKTAAAAKVLAALGAKKALVVDDAA---NLALAKSVRNLDGSDFLAV 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +G+NVYDILR LVL+ + LE Sbjct: 178 EGLNVYDILRHDALVLTADTAKKLE 202 >gi|87248365|gb|ABD36235.1| ribosomal protein L4 [Bombyx mori] Length = 284 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG-EDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ + NLD E+K G+I + ++A P ++ + WQS + + +K +EV Sbjct: 55 EVWIENLDSVEEKKLGLIELHPMVYAAPPSIDMIHSNVMWQSKYSWVSWAHTKTSAEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRA H S S FRGGG A GP LP + L LS K Sbjct: 115 GGKKPWPQKGLGRASHGSMSSPLFRGGGVAHGPRSGKSHFFMLPFHLSLHGLTTTLSAKL 174 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLL 176 +D+ ++ +L +++YLV + + LIID N A N+ ++N++ Sbjct: 175 AQDDLHIVKDLELPTDESQYLVDLIENSNWGPSVLIIDDTDYAPSNITAATDNLLHVNIM 234 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ LVL+++A E +E++ Sbjct: 235 PVYGLNVYSMLKHDTLVLTQAAAEKIEEKL 264 >gi|329118599|ref|ZP_08247303.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200] gi|327465334|gb|EGF11615.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200] Length = 206 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ G +SVS+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKVINAQGQVSGSLSVSDALFAREYNEALVHQLVTAYLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VI+ L + KTK + + L L + QLD N L++RN+PN+ +L Q Sbjct: 121 DRLCVIEQLAAATPKTKDFAEQVKNFGLEQVLFVTK-QLDENVYLSSRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K AIE LE+++ Sbjct: 180 IDPYSLLRYKKVVVTKDAIEQLEEQW 205 >gi|119511178|ref|ZP_01630295.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414] gi|119464166|gb|EAW45086.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K RSEV Sbjct: 1 MVESVVKNWQGEQVGETTFELRVAKESTASHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYNQKLNRKERRLALRTAFVSR--A 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDG-CQLDRNFQLAARNIPNIN 174 +D++V+ + ++ KTK LV R+ A + AL+I + N L+ARNI N+ Sbjct: 119 DDLIVVQDFSNELSRPKTKELVAALARWGAAPENKALLIMPIISSEDNVYLSARNIQNLK 178 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NVYD+L K+V++ SA+ +++ + Sbjct: 179 LIAADQLNVYDLLHADKIVITASALAKIQEVY 210 >gi|319443064|ref|ZP_07992220.1| 50S ribosomal protein L4 [Corynebacterium variabile DSM 44702] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L+V DG G + + IF ++P ++ +V+ Q KR G +K R +V G Sbjct: 4 LTLNVHTADGSTNGTVELPASIFDVEPSVPLMHQVVVAQLAAKRQGTHATKTRGDVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S GGG GP P PKK+++ ALR AL+D+ + Sbjct: 64 KKPFRQKGTGRARQGSTRAPHMTGGGTVHGPQPRDYDQRTPKKMKAAALRGALTDRVRNE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I +++ LV+ + + F R D L++ G + D + N+P ++ L Sbjct: 124 RIHLVEELVAGQTPSTKSARSFLGRLTDRKTVLVVLGRE-DVTAWKSVNNLPAVHALSFD 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 183 QLNTYDVLNADDVVFSVEALNAF 205 >gi|172039996|ref|YP_001799710.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109] gi|226730646|sp|B1VET7|RL4_CORU7 RecName: Full=50S ribosomal protein L4 gi|171851300|emb|CAQ04276.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109] Length = 225 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V DG+ G + + IF ++ ++ +V+ Q KR G +KGR EV G Sbjct: 4 LKLDVHTADGKTNGSVELPASIFDVEASVALMHQVVTAQLAAKRQGTHATKGRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG GP P PKK+++ ALR ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARHS 123 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV + TK + L +++ + D + + N+PN++ LP Sbjct: 124 RIHVIEELVPGQIPSTKSARSFLERLTERKQILVVLTREDLTARKSVANLPNVHALPADQ 183 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A++A Sbjct: 184 LNTYDVLHADDVVFSVEALDAF 205 >gi|195343148|ref|XP_002038160.1| GM17909 [Drosophila sechellia] gi|194133010|gb|EDW54578.1| GM17909 [Drosophila sechellia] Length = 296 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200 Query: 134 CKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + +++I + N A+ ++ +NL+P G+NVY +L+ Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|325954993|ref|YP_004238653.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922] gi|323437611|gb|ADX68075.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922] Length = 209 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 114/209 (54%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N++G++ G +S+ E +F ++P + ++ +R G K+K R+EVA + Sbjct: 1 MEVAVLNIEGKETGRKVSLDEAVFGVEPSTHTVWLEVKQYLAAQRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K + LA + LS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKAQKRLAKKSVLSQKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+I VI++ + +TK + + L L +L + G + ++N L++RN+ ++ Sbjct: 121 NEIKVIEDFSFEAPRTKEFINVLKGLGLEGKRSLFVLG-EPNKNVYLSSRNLQKTKVVNN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 +N+YD++ S++V + ++ ++D + Sbjct: 180 SELNIYDMINASQIVFFEGSLATIQDNLR 208 >gi|91094379|ref|XP_970941.1| PREDICTED: similar to mitochondrial 39S ribosomal protein L4 [Tribolium castaneum] gi|270014913|gb|EFA11361.1| hypothetical protein TcasGA2_TC011518 [Tribolium castaneum] Length = 274 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG-EDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + N D E+K ++ + ++FA P+ I+ +RWQS + + + +K R EV Sbjct: 44 QVWLENFDTIEEKKLAILELHPEVFAANPRVDIIHDNVRWQSLYRYVSYAHTKSRFEVRG 103 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S FRGGG GP P + LP R L LS K Sbjct: 104 GGRKPWPQKGLGRARHGSIRSPLFRGGGVIHGPKSPNPHFYMLPFYTRIHGLTATLSIKL 163 Query: 119 CSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ VI +L ++ + + R S + + + RN A ++ + NL+ Sbjct: 164 AQDDLHVITDLEIPTDDPNFVEELVKSRKWGPSVLFVDESDIMPRNITAATDSVKHFNLM 223 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+++A++ +E + Sbjct: 224 PAYGLNVYSMLKHDTLVLTRAALDLIESKL 253 >gi|288942071|ref|YP_003444311.1| 50S ribosomal protein L4/L1e [Allochromatium vinosum DSM 180] gi|288897443|gb|ADC63279.1| ribosomal protein L4/L1e [Allochromatium vinosum DSM 180] Length = 203 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++RN G + VS+ +F ++ + G++ +V+ R G K R+ V+ G Sbjct: 1 MEIAIRNHTGASS--VQVSDAVFGVEYKPGLVHQVVTAYMAGARAGTKAQKNRAAVSGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK + QKGTGRAR + +R GG F P + +K+ A+R LS+ + Sbjct: 59 SKPWRQKGTGRARAGTSRSPLWRSGGVTFAAQPRDYGQKVNRKMYRGAVRSILSELVRTE 118 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ L +E KTK L+ ++ DL++ALI+ DG D LAARN+P +++L Q Sbjct: 119 RLVVVSELALEEAKTKALIALLKSHDLTDALILTDG--FDDTLYLAARNLPKVDVLSAQE 176 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ ++ +++AI+ LE+R Sbjct: 177 VDPVSLVAFETILATEAAIKKLEERL 202 >gi|195579557|ref|XP_002079628.1| GD21919 [Drosophila simulans] gi|194191637|gb|EDX05213.1| GD21919 [Drosophila simulans] Length = 296 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + + LI+D + N A+ ++ +NL+P G+NVY +L+ Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|194759834|ref|XP_001962152.1| GF15323 [Drosophila ananassae] gi|190615849|gb|EDV31373.1| GF15323 [Drosophila ananassae] Length = 296 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ I+ + WQ + + +++K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSFAQTKTRAEVRGGGRKPWPQKGMGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 141 HGSIRSPLFKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200 Query: 134 CKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + +++I + N A + +NL+P G+NVY +L+ Sbjct: 201 KDGQFLKDLIAERNWGPSVLIVDEDHMFPANICQATDELGYVNLMPSFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|88608608|ref|YP_506158.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama] gi|109893610|sp|Q2GED8|RL4_NEOSM RecName: Full=50S ribosomal protein L4 gi|88600777|gb|ABD46245.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama] Length = 214 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++V + + +L+ V+ WQ ++R G K+KG SEV+ T K Y QKGTGRAR Sbjct: 18 GSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYRQKGTGRAR 77 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S QFR GG FGPV ++ KKVRSLALR ALS +F + V+++ E Sbjct: 78 QGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEGRLFVLESSRLGES 137 Query: 135 KTKYLVTRFRA---LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 K L+ F + L + +I + + AA N+ + +L NVYD++ Sbjct: 138 KAATLLKWFASNAELSVGKKFLIVTEEKNEGLLRAASNLHWVKVLWGSSANVYDVVLHDF 197 Query: 192 LVLSKSAIEALEDRF 206 ++L K++++ L R Sbjct: 198 VLLEKASVDVLVKRL 212 >gi|256390141|ref|YP_003111705.1| 50S ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928] gi|256356367|gb|ACU69864.1| ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928] Length = 217 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 1/185 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ ++ +V+ Q R G K+K R EV+ G K Y QKGTGRAR Sbjct: 7 VDLPGEIFDVQTNIPLIHQVVVAQLAAARQGTHKTKTRGEVSGGGKKPYRQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-K 135 S QF GGG GPVP PKK+++ ALR ALSD+ ++V+D LV Sbjct: 67 STRAPQFAGGGVVHGPVPRDYAQRTPKKMKAAALRGALSDRARDGRVIVVDALVEGATPN 126 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK V + + +++ + D + RN+P ++L+ V +N YD+L +V + Sbjct: 127 TKSAVALLKGVTEHKNVLVVLQRTDEVSYKSLRNVPTVHLIDVGQLNTYDVLVNDAVVFT 186 Query: 196 KSAIE 200 + A + Sbjct: 187 QGAYD 191 >gi|148270423|ref|YP_001244883.1| 50S ribosomal protein L4 [Thermotoga petrophila RKU-1] gi|170289182|ref|YP_001739420.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2] gi|281412730|ref|YP_003346809.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10] gi|166199921|sp|A5IM84|RL4_THEP1 RecName: Full=50S ribosomal protein L4 gi|226731438|sp|B1LBN9|RL4_THESQ RecName: Full=50S ribosomal protein L4 gi|147735967|gb|ABQ47307.1| LSU ribosomal protein L4P [Thermotoga petrophila RKU-1] gi|170176685|gb|ACB09737.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2] gi|281373833|gb|ADA67395.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10] Length = 235 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG A GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLD--RNFQLAARNIPNINLL 176 N + V+D+L + KTK+L + L LS+ LI+ + + N +L+ +N+PN+ ++ Sbjct: 121 NKLFVLDDLKLERPKTKFLKEILQNLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVI 180 Query: 177 ----P-----------VQGINVYDILRCSKLVLSKSAIEALED 204 P + G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTQDMVSKIEE 223 >gi|311744808|ref|ZP_07718604.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272] gi|311311925|gb|EFQ81846.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272] Length = 323 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 1/182 (0%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 DIF + ++ +V+ Q R G +K R EV G K Y QKGTGRAR S Sbjct: 15 DIFGTQVNIPLIHQVVVAQLAAARQGTHDTKSRGEVRGGGKKPYRQKGTGRARQGSIRAP 74 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK-TKYLV 140 Q+ GGG GP P PKK+++ ALR ALSD+ S + V+D VS TK V Sbjct: 75 QYNGGGVVHGPTPRNYDQRTPKKMKAAALRGALSDRARSGRLHVVDAFVSAAAPSTKDAV 134 Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 R++ L +++ + D + RN+ ++ +LP +N YD+L+ L+ ++ A + Sbjct: 135 ATLRSITLRPRVLVAVTREDVVTAKSLRNVADVVILPFDQLNTYDVLKSDDLIFTREAFD 194 Query: 201 AL 202 Sbjct: 195 GF 196 >gi|302036666|ref|YP_003796988.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii] gi|300604730|emb|CBK41062.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii] Length = 207 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 6/193 (3%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + + ++F KP ++ + Q R G + + R EV+ +G K + QK TGRAR Sbjct: 15 GTVDLPSEVFGCKPHVPLVHEAVVMQRACDRQGTASTLRRGEVSGSGKKPWKQKHTGRAR 74 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +R GG FGP P +P+K AL+ ALS K +++V+ +L + Sbjct: 75 AGSLRSPVWRHGGTVFGPKPRSYAFGMPRKKYRAALQSALSAKALEGNVVVVSDLTINQA 134 Query: 135 KTKYLVTRFRALDLS-NALIIDGCQLDRNFQL--AARNIPNINLLPVQGINVYDILRCSK 191 KTK L L +S AL++ G D N L A RN+ I +L + +NVYD+LRC Sbjct: 135 KTKLLANALTQLGISGTALLVVG---DANSHLVQAGRNLSGITILRPEELNVYDVLRCHS 191 Query: 192 LVLSKSAIEALED 204 L++ +S + +++ Sbjct: 192 LIIPQSELNRVKE 204 >gi|229818239|ref|ZP_04448521.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM 20098] gi|229784490|gb|EEP20604.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM 20098] Length = 219 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF ++ ++ +V+ Q R G +K R+ Sbjct: 4 VTLNVTDAKGAKTGTVEAPAEIFGFSAEEVRAHVPLIHQVVVAQLAAARQGTHATKTRAN 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + ++ I V+D V+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANADRIAVVDFAVADAPSTKAAVAALTPITENKFTTVVLTRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V SK A EA Sbjct: 184 FVDQLNTYDVVTAQYVVFSKEAFEAF 209 >gi|298370590|ref|ZP_06981905.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281200|gb|EFI22690.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 206 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMAAILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + R L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVRNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|289742297|gb|ADD19896.1| mitochondrial ribosomal protein L4 [Glossina morsitans morsitans] Length = 301 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ ++ + WQ + + + SK R+EV G K + QKGTGRAR Sbjct: 86 GIIELHPDVFATQPRVDVIHENIEWQRKYRFVSFAHSKTRAEVRGGGRKPWPQKGTGRAR 145 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S FRGGG+A GP P + LP R + L LS K +D+ +I ++ Sbjct: 146 HGSIRSPLFRGGGRAHGPRSPTTHFYMLPFFKRVMGLTATLSVKLAQDDLHIIKDVEIPS 205 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + + LI+D + N A + +NL+P +N Y +L+ Sbjct: 206 GDHQFLKDLIIERNWGPSVLIVDKEDIFPENICEATDKLGYVNLMPAYSLNTYSMLKHDT 265 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ +E+R Sbjct: 266 LVLTINAVKHIEERL 280 >gi|295394347|ref|ZP_06804572.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972805|gb|EFG48655.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 223 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 5/203 (2%) Query: 4 LSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L+V LD G+ G + IF K ++ +V+ Q R G K+K RSEV G Sbjct: 5 LTVDILDAKGKKAGSAELPASIFDQKTNVPLIHQVVVAQLAASRQGTHKAKTRSEVRGGG 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+ GGG GPVP PKK+++ ALR ALSD+ Sbjct: 65 RKPYRQKGTGNARQGSIRAPQYAGGGIVHGPVPRDYSQRTPKKMKAAALRGALSDRARLG 124 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ NL+ + TK AL D ++ LI+ + D L+ RN+P +++L Sbjct: 125 QVFVVKNLIDSDVPSTKAARQALEALSDRAHKLIVT-ERDDSITALSVRNLPTVHVLSFD 183 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A+ + Sbjct: 184 QLNTYDVLMADDIVFTEAALNSF 206 >gi|226939187|ref|YP_002794258.1| RplD [Laribacter hongkongensis HLHK9] gi|254803740|sp|C1DAR8|RL4_LARHH RecName: Full=50S ribosomal protein L4 gi|226714111|gb|ACO73249.1| RplD [Laribacter hongkongensis HLHK9] Length = 206 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ + +E +F + + ++ +V+ R G K RSE+ + Sbjct: 1 MELKVINQQGQAVESLQAAETLFGREYNEALVHQVVTAYLANARAGNRAQKDRSEINKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + +K+ + LS+ S Sbjct: 61 KKPFRQKGTGRARAGRASSPLWRGGGKVFPNSPDENFSHKVNRKMFRAGMAAILSELLRS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++ID++ KTK + +AL L NAL+I G +LD N L++RN+ N+ ++ Sbjct: 121 DRLVIIDDIKVDSPKTKEFAAKAKALGLENALVITG-ELDENLYLSSRNLSNVLVIEASQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y ++R K+V+++ A++ E+++ Sbjct: 180 ADPYSLVRFDKVVVTRDAVKQFEEQW 205 >gi|83319335|ref|YP_424659.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110059|sp|P10135|RL4_MYCCT RecName: Full=50S ribosomal protein L4 gi|83283221|gb|ABC01153.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 116/209 (55%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V + G + I++++ ++ ++P QQ I V+ Q+ R G K K R+EV+ Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQA-ALRQGTKKVKTRAEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q++GGG FGP P I ++ KKVR+LA R LS K Sbjct: 60 GRKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++++D + TK +V + L D LI+ + + + ++ NI + + Sbjct: 120 ENNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVK-SSNNITGVKTIS 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 179 ANQLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|17231706|ref|NP_488254.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120] gi|46576839|sp|Q8YPI0|RL4_ANASP RecName: Full=50S ribosomal protein L4 gi|17133349|dbj|BAB75913.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120] Length = 210 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTAFVSRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +D+++++ ++ KTK LV TR+ A S L+I + N L+ARNI N+ L Sbjct: 119 DDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLIL-SEFPENVYLSARNIENLKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NVYD+L K+V++ SA+E +++ + Sbjct: 178 IAADQLNVYDLLHADKIVVTTSALEKIQEVY 208 >gi|99032310|pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome gi|251837156|pdb|3IY9|D Chain D, Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Length = 175 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 4/174 (2%) Query: 35 RVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV- 93 +V WQ KRI +K+K R+EV G K + QKGTGRARH S +RGGG A GP Sbjct: 2 QVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRG 61 Query: 94 PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNA 151 P + LP KVR+L L+ AL+ K +D+ ++D+L +YL + +R S Sbjct: 62 PTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVL 121 Query: 152 LI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ + ++ ++ A + NL+P G+NV+ +L+ LVL+ + LED Sbjct: 122 LVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLED 175 >gi|269792793|ref|YP_003317697.1| 50S ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100428|gb|ACZ19415.1| ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM 6589] Length = 208 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 103/199 (51%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 N +GE G + +SE +F + +V+ R+G +K R EV+ G K + Q Sbjct: 8 NFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGEVSGGGRKPWRQ 67 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 K TGRAR S + GGG A GP P + KKVR LALR AL+ K ++++V++ Sbjct: 68 KHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKEDNMLVLE 127 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK +++ + ++ + D N + +A NIP +L V +NVYDIL Sbjct: 128 RFELEAPKTKAMISFLERVQGGKKPLLVIHEPDHNVRKSASNIPGAMVLHVDSLNVYDIL 187 Query: 188 RCSKLVLSKSAIEALEDRF 206 +++++ A+ +E+ F Sbjct: 188 NHDRMIVTAEAVRKIEEVF 206 >gi|295101415|emb|CBK98960.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii L2-6] Length = 207 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + +V +++G+ I +S+ +F + P ++ + V+ + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLA-NQRQGTQNTKIRMEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK Sbjct: 60 GGKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +++V+D E KTK +V+ A+ ++ +D F +A NI + Sbjct: 120 NGNMVVVDKFACDEYKTKTVVSMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L KL++S A + LE+ Sbjct: 180 SVNTYDVLNADKLIISVGAAKKLEE 204 >gi|125986720|ref|XP_001357123.1| GA19152 [Drosophila pseudoobscura pseudoobscura] gi|195160102|ref|XP_002020915.1| GL14082 [Drosophila persimilis] gi|54645450|gb|EAL34189.1| GA19152 [Drosophila pseudoobscura pseudoobscura] gi|194117865|gb|EDW39908.1| GL14082 [Drosophila persimilis] Length = 293 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ ++ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 78 GLIELHPDVFAAQPRVDVIQENIEWQRKYRYVSLAHAKTRAEVRGGGRKPWPQKGMGRAR 137 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R + L LS K +D+ VI+N+ Sbjct: 138 HGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHVIENVDIPT 197 Query: 134 CKTKYLVTRFRALDL-SNALIIDG-CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +++ + + LI+D N A ++ +NL+P G+NVY +L+ Sbjct: 198 RDAQFIKDLIAERNWGPSVLIVDKEYMFPENICYATDDLGYVNLMPAFGLNVYSMLKHDT 257 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A++ LE R Sbjct: 258 LVLTVDAVKHLEQRL 272 >gi|9956063|gb|AAG02005.1| similar to Homo sapiens CGI-28 protein mRNA with GenBank Accession Number AF132962 Length = 211 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 4/172 (2%) Query: 39 WQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIG 97 WQ KRI +K+K R+EV G K + QKGTGRARH S +RGGG A GP P Sbjct: 2 WQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSY 61 Query: 98 VHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALI-I 154 + LP KVR+L L+ AL+ K +D+ ++D+L +YL + +R S L+ + Sbjct: 62 YYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDL 121 Query: 155 DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ A + NL+P G+NV+ +L+ LVL+ + LED+ Sbjct: 122 THEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 173 >gi|227876214|ref|ZP_03994330.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243] gi|269976880|ref|ZP_06183854.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1] gi|306819490|ref|ZP_07453197.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC 35239] gi|307701215|ref|ZP_07638237.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16] gi|227843175|gb|EEJ53368.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243] gi|269934711|gb|EEZ91271.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1] gi|304647782|gb|EFM45100.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC 35239] gi|307613609|gb|EFN92856.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16] Length = 214 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 12/206 (5%) Query: 5 SVRNLDGEDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 S+ LDG K G + + ++F L+ +L +V+ Q R G +K R +V+ G Sbjct: 6 SIDVLDGAGKKTGTVELPGEVFDLELNVPLLHQVVNAQLAAARQGTHATKTRGDVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N Sbjct: 66 KPYRQKGTGRARQGSIRAPQFTGGGIVHGPQPRDYTQKTPKKMKAAALRQALSDRARANR 125 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSN------ALIIDGCQLDRNFQLAARNIPNINLL 176 + V+ + K+ + T+ L N ALI+ Q+D L+ N+ ++L Sbjct: 126 VHVLSDFGVKDAPS----TKAAKAALQNAVADRRALIVLTPQVDDVVALSVNNLAEHHVL 181 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD+L +V S SA+++ Sbjct: 182 FVGELNTYDVLANDDVVFSASALDSF 207 >gi|41410260|ref|NP_963096.1| 50S ribosomal protein L4 [Mycobacterium avium subsp. paratuberculosis K-10] gi|46577156|sp|P61066|RL4_MYCPA RecName: Full=50S ribosomal protein L4 gi|41399094|gb|AAS06712.1| RplD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 217 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 1/201 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ G Sbjct: 3 LKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 63 RKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNG 122 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I I LVS + TK AL +++ + D + RN+P +++L Sbjct: 123 RIHAITELVSGQTPSTKSAKAFLGALTERKQVLVVIGRSDEAGAKSVRNLPGVHILAPDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 183 LNTYDVLRADDVVFSVEALRA 203 >gi|220930966|ref|YP_002507874.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168] gi|254803739|sp|B8D0C5|RL4_HALOH RecName: Full=50S ribosomal protein L4 gi|219992276|gb|ACL68879.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168] Length = 209 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G G I +++++F + + ++ +V+ Q R G + +K R EV+ Sbjct: 1 MPQVAKYDTTGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P + +PKKV+ LALR LS K + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++D L KTK +V L+L ++I D N L+ARNIP + L V Sbjct: 121 EELIILDELKFDTPKTKQVVELLSNLNLEGKKVLIILPDKDANIYLSARNIPGVKTLVVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N +D+L +V+S+ A++ +E+ Sbjct: 181 ALNAFDLLNNDCIVMSEEAVKRVEE 205 >gi|261391679|emb|CAX49128.1| 50S ribosomal protein L4 [Neisseria meningitidis 8013] Length = 206 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|42526280|ref|NP_971378.1| 50S ribosomal protein L4 [Treponema denticola ATCC 35405] gi|46577160|sp|P61070|RL4_TREDE RecName: Full=50S ribosomal protein L4 gi|41816392|gb|AAS11259.1| ribosomal protein L4 [Treponema denticola ATCC 35405] gi|325473224|gb|EGC76419.1| 50S ribosomal protein L4 [Treponema denticola F0402] Length = 211 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 108/205 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L ++ + + KR+G + +KGR+EV + Sbjct: 1 MEKKVYSVDGKELRTINLDDKVFGLPVNDDVIYYAINNELANKRVGTACTKGRAEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK Y QKGTGRAR K GGG FGP P +++PKK + LA++ LS K ++ Sbjct: 61 SKPYSQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFSYSMPKKAKRLAMKSILSLKAQND 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KT+ LV +I D + A RNIP+++ L + Sbjct: 121 RLVVVEDFTVESGKTRDLVKILDNFAKGERAVIILKDDDSLVKRAGRNIPHLSFLAYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ +SA + L + + Sbjct: 181 RAHDLFYGRKVIMLESAAKNLSEFY 205 >gi|323454046|gb|EGB09917.1| hypothetical protein AURANDRAFT_14958 [Aureococcus anophagefferens] Length = 178 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 2/177 (1%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 D+FA + +L +RWQ ++R SK R EV+ + K+Y QKGTG AR S Sbjct: 1 DVFAAPLRVDVLHDCVRWQRNKRRQVHRASKRRGEVSGSTRKLYRQKGTGNARAGSLRSP 60 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 +GG KA GP L KK R LALR ALS K + V +L + KT+ + Sbjct: 61 LRKGGAKAHGPAARDFKTELNKKQRRLALRVALSAKLREGRLTVAASLDTPP-KTRVVAD 119 Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198 R + +AL +D L +F+ A RN+P +++LP G NVY IL+ LVLS+SA Sbjct: 120 ALRGRGIRSALFVDD-DLAEDFKTACRNVPLVDVLPQVGANVYSILQRDHLVLSESA 175 >gi|288925714|ref|ZP_06419646.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17] gi|288337652|gb|EFC76006.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17] Length = 209 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 116/211 (54%), Gaps = 14/211 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV ++ G++ G ++++E I+ L+P + +L ++ +R G +KSK RSE+ + Sbjct: 1 MEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEINGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR GGG+ FGP P L KKV+ LA + ALSDK Sbjct: 61 TRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173 N I+V+++ + KTK + +++ L +DG + ++N L+ARN+ Sbjct: 121 NAIVVVEDFDIETPKTKDFI------NIAKNLKVDGRKTLLLLPTANKNVYLSARNLQRT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++P +N Y +L LV+++SA++ +++ Sbjct: 175 EVMPAAMLNSYKVLNADVLVIAESALKVIDE 205 >gi|261400053|ref|ZP_05986178.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC 23970] gi|269210279|gb|EEZ76734.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC 23970] Length = 206 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|307154841|ref|YP_003890225.1| 50S ribosomal protein L4/L1e [Cyanothece sp. PCC 7822] gi|306985069|gb|ADN16950.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7822] Length = 210 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V+N DG++ G + + + IL R + Q R G + +K RSEV Sbjct: 1 MVNCVVKNWDGDEVGQTPLELKVAKEETASHILHRAVVRQLANARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL+++ + Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYNLKMNRKERRLALRTALNNQ--A 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 ++++++N + + KT+ L + R+ + L+I ++ N L+ARNI N+ + Sbjct: 119 ENLIIVENFGEQFPQPKTRELASALARWGVTEKDKVLLIL-SEIPENVGLSARNICNVKV 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +NVYD+L SKLV + A+E + Sbjct: 178 IKADSLNVYDLLTASKLVATSDALEKI 204 >gi|257456893|ref|ZP_05622074.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580] gi|257445602|gb|EEV20664.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580] Length = 211 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I +++ +F L + ++ + + R+G + +KGR+EV + Sbjct: 1 MEKKVYSIDGKELRTIELNDAVFGLPVNEDVIYYAITNELANMRVGTASTKGRAEVNGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P +A+PKK + LA++ LS K + Sbjct: 61 AKPYKQKGTGRARRGDKKSPLLLGGGTIFGPKPRDYSYAIPKKAKRLAMKSILSLKAQDD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALII--DGCQLDRNFQLAARNIPNINLLP 177 ++VI++ + KTK L +A D L++ D L R A +NIP ++ L Sbjct: 121 RLVVIEDFTVETGKTKDLAKILQAFVQDERTVLVLKDDDAMLKR----AGKNIPTLSFLT 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 + +D+ K+++ +SA + L Sbjct: 177 YNRLRAHDLFYGRKVLMLESAAKNL 201 >gi|15607842|ref|NP_215216.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv] gi|15840109|ref|NP_335146.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CDC1551] gi|31791887|ref|NP_854380.1| 50S ribosomal protein L4 [Mycobacterium bovis AF2122/97] gi|121636624|ref|YP_976847.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660477|ref|YP_001282000.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|148821907|ref|YP_001286661.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis F11] gi|167967944|ref|ZP_02550221.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|215402486|ref|ZP_03414667.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 02_1987] gi|215410257|ref|ZP_03419065.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|215425944|ref|ZP_03423863.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T92] gi|215429542|ref|ZP_03427461.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|215444825|ref|ZP_03431577.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|218752352|ref|ZP_03531148.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis GM 1503] gi|219556551|ref|ZP_03535627.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|224989096|ref|YP_002643783.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253797645|ref|YP_003030646.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435] gi|254231022|ref|ZP_04924349.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C] gi|254363649|ref|ZP_04979695.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str. Haarlem] gi|254549663|ref|ZP_05140110.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185584|ref|ZP_05763058.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CPHL_A] gi|260199712|ref|ZP_05767203.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T46] gi|260203873|ref|ZP_05771364.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis K85] gi|289442103|ref|ZP_06431847.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46] gi|289446262|ref|ZP_06436006.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A] gi|289552959|ref|ZP_06442169.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605] gi|289568646|ref|ZP_06448873.1| ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|289573310|ref|ZP_06453537.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85] gi|289744426|ref|ZP_06503804.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987] gi|289749209|ref|ZP_06508587.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92] gi|289752749|ref|ZP_06512127.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|289756790|ref|ZP_06516168.1| ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|289760829|ref|ZP_06520207.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503] gi|294996197|ref|ZP_06801888.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 210] gi|297633201|ref|ZP_06950981.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 4207] gi|297730181|ref|ZP_06959299.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN R506] gi|298524193|ref|ZP_07011602.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|306774813|ref|ZP_07413150.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001] gi|306781455|ref|ZP_07419792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002] gi|306783354|ref|ZP_07421676.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003] gi|306787723|ref|ZP_07426045.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004] gi|306794490|ref|ZP_07432792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005] gi|306796456|ref|ZP_07434758.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006] gi|306802316|ref|ZP_07438984.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008] gi|306806526|ref|ZP_07443194.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007] gi|306966723|ref|ZP_07479384.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009] gi|306970915|ref|ZP_07483576.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010] gi|307078645|ref|ZP_07487815.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011] gi|307083209|ref|ZP_07492322.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012] gi|313657508|ref|ZP_07814388.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN V2475] gi|46397667|sp|P60728|RL4_MYCBO RecName: Full=50S ribosomal protein L4 gi|46397668|sp|P60729|RL4_MYCTU RecName: Full=50S ribosomal protein L4 gi|166234687|sp|A1KGI3|RL4_MYCBP RecName: Full=50S ribosomal protein L4 gi|166234691|sp|A5U088|RL4_MYCTA RecName: Full=50S ribosomal protein L4 gi|254803746|sp|C1AL36|RL4_MYCBT RecName: Full=50S ribosomal protein L4 gi|1806170|emb|CAB06465.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium tuberculosis H37Rv] gi|13880259|gb|AAK44960.1| ribosomal protein L4 [Mycobacterium tuberculosis CDC1551] gi|31617474|emb|CAD93584.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium bovis AF2122/97] gi|121492271|emb|CAL70738.1| Probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600081|gb|EAY59091.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C] gi|134149163|gb|EBA41208.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str. Haarlem] gi|148504629|gb|ABQ72438.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|148720434|gb|ABR05059.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis F11] gi|224772209|dbj|BAH25015.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319148|gb|ACT23751.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435] gi|289415022|gb|EFD12262.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46] gi|289419220|gb|EFD16421.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A] gi|289437591|gb|EFD20084.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605] gi|289537741|gb|EFD42319.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85] gi|289542400|gb|EFD46048.1| ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|289684954|gb|EFD52442.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987] gi|289689796|gb|EFD57225.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92] gi|289693336|gb|EFD60765.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|289708335|gb|EFD72351.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503] gi|289712354|gb|EFD76366.1| ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|298493987|gb|EFI29281.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|308216703|gb|EFO76102.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001] gi|308325755|gb|EFP14606.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002] gi|308331848|gb|EFP20699.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003] gi|308335635|gb|EFP24486.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004] gi|308337250|gb|EFP26101.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005] gi|308343116|gb|EFP31967.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006] gi|308347003|gb|EFP35854.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007] gi|308350982|gb|EFP39833.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008] gi|308355578|gb|EFP44429.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009] gi|308359536|gb|EFP48387.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010] gi|308363441|gb|EFP52292.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011] gi|308367079|gb|EFP55930.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012] gi|323720926|gb|EGB29992.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A] gi|326905076|gb|EGE52009.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148] gi|328457426|gb|AEB02849.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207] Length = 223 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 3/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ G I + ++F + ++ +V+ Q R G +K R EV+ Sbjct: 8 TLKIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGG 67 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 68 GRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 127 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I I LV + + F A + L++ G + D + RN+P +++L Sbjct: 128 GRIHAITELVEGQNPSTKSARAFLASLTERKQVLVVIG-RSDEAGAKSVRNLPGVHILAP 186 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 187 DQLNTYDVLRADDVVFSVEALNA 209 >gi|46399688|emb|CAF23137.1| putative 50S ribosomal protein L4 [Candidatus Protochlamydia amoebophila UWE25] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 20/178 (11%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPK 103 R + +K R+EV +T K + QKG GRARH S Q+RGGG+AFGP P H + K Sbjct: 14 RQWSASTKTRAEVKHTTKKAHPQKGQGRARHGSTVAPQYRGGGRAFGPRPKFDQHVRINK 73 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG------- 156 K R A+R LS+K N + +I++ KTK L R DL ++ G Sbjct: 74 KERKAAIRFLLSEKLKENKVWLIEDTAMDAPKTKTLAQFLRGFDLRGRVLFLGETTFTDV 133 Query: 157 ------------CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +F + RN+P N + IN YD++ ++VL++SA+ L Sbjct: 134 ETEGKVQRVSISTDKHNHFVKSMRNLPRANFMLASNINGYDVMIAREIVLTESALNEL 191 >gi|300728442|ref|ZP_07061804.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14] gi|299774361|gb|EFI70991.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14] Length = 209 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +++++ IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVNVLDIKGQETGRKVTLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYRFKLNKKVKVLARKSALTYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I+V+++ + KTK V + L + N AL++ ++++N L+ARN+ N+ Sbjct: 121 NAIVVVEDFNFEAPKTKDFVNIAKNLKVDNKKALVV-LPEVNKNVYLSARNLKKANVETA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 IN Y +L LV+S+S++E +E Sbjct: 180 SSINAYKVLNADVLVISESSLETIE 204 >gi|251772491|gb|EES53057.1| Ribosomal protein L4 [Leptospirillum ferrodiazotrophum] Length = 210 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V + DG+ IS+ ++ GI+ + + R G S +K R EV+ G Sbjct: 1 MNIPVLSSDGKSSSTISIDSEVTQDSFNNGIVHEITTMELAGMRAGTSSTKTRGEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S Q+RGG FGP P + P K ALR AL + N Sbjct: 61 KKPYRQKGTGRARQGSSRAPQWRGGAIIFGPRPRNYFYKQPSKKVLKALREALLVRVSEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS----NALIIDGCQLDRNFQLAARNIPNINLLP 177 + +I NL S+ KTK V + + N LII +LD N L++RNIP + +LP Sbjct: 121 KVSIIPNLESETLKTKKFVDLLKKYHTNPGYQNILIIS-EELDENTWLSSRNIPGLTILP 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ +++++ + E L+ K Sbjct: 180 STAVTALYMVFTDVVLVAEDSREWLQQLLK 209 >gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group] Length = 227 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++ Sbjct: 79 YKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLL 138 Query: 125 VIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+NV Sbjct: 139 VFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNV 198 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 Y IL+ LV+++ A+ + +R Sbjct: 199 YSILQHDTLVMTRDAVNRIVERM 221 >gi|163786189|ref|ZP_02180637.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1] gi|159878049|gb|EDP72105.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1] Length = 209 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V +++G+D G +S+D++A++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVAVLDINGKDTGRKAELSKDVYAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYGFKLNKNVKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 IMV+++ + KTK + +AL++ N +LI+ G + N L++RN ++ Sbjct: 121 KSIMVMEDFNFEAPKTKNFINVLKALEVENKKSLIVLGGS-NNNVYLSSRNFKGSEVVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ +K++L + A+E +E Sbjct: 180 SELSTYKIMNANKVILLEGALEGIE 204 >gi|25027079|ref|NP_737133.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|259506792|ref|ZP_05749692.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|46577270|sp|Q8FS79|RL4_COREF RecName: Full=50S ribosomal protein L4 gi|23492359|dbj|BAC17333.1| putative 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|259165663|gb|EEW50217.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] Length = 218 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ +G G + + +IF + +L +V+ Q R G +K R+EV G Sbjct: 4 LTLDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYAQRTPKKMIKAALYGALSDRARNE 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV + + F R + + L++ G + D N Q +A N+P +++L Sbjct: 124 RIHVISELVPGQAPSTKSAKAFIERLTERKSVLLVIGRE-DINAQKSANNLPGVHILAAD 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 183 QLNTYDVLNSDDIVFSVEALHTFINR 208 >gi|22547140|ref|NP_666500.1| 39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens] gi|12653925|gb|AAH00756.1| Mitochondrial ribosomal protein L4 [Homo sapiens] gi|119604491|gb|EAW84085.1| mitochondrial ribosomal protein L4, isoform CRA_b [Homo sapiens] Length = 263 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 >gi|313112879|ref|ZP_07798525.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624784|gb|EFQ08093.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 207 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + +V +++G+ I +S+ +F + P ++ + V+ + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLA-NQRQGTQNTKIRMEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK Sbjct: 60 GGKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 120 NGNMVVVDKFACDEYKTKTVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L KL++S A + LE+ Sbjct: 180 SVNTYDVLNADKLIISVDAAKKLEE 204 >gi|257440268|ref|ZP_05616023.1| ribosomal protein L4/L1 family protein [Faecalibacterium prausnitzii A2-165] gi|257197302|gb|EEU95586.1| ribosomal protein L4/L1 family protein [Faecalibacterium prausnitzii A2-165] Length = 207 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + +V +++G+ I +S+ +F + P ++ + V+ + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLA-NQRQGTQNTKIRMEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK Sbjct: 60 GGKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 120 NGNMVVVDKFTCDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L KL++S A + LE+ Sbjct: 180 SVNTYDVLNADKLIISVDAAKKLEE 204 >gi|91763161|ref|ZP_01265125.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002] gi|91717574|gb|EAS84225.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002] Length = 207 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 113/201 (56%), Gaps = 3/201 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NLDG+ K I V + IF+ K + ++ VL + + +K+K ++E+ + SK+Y Q Sbjct: 7 NLDGK-KDSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGSTSKIYAQ 65 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFCSNDIMV 125 KGTG ARH+S+ F GGG A GP + L K + L++ +++K N++++ Sbjct: 66 KGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNKFNNLII 125 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 + ++ KTK + + + +++N+LII + + RNIPN+ + + + +D Sbjct: 126 FSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDINHFSAFD 185 Query: 186 ILRCSKLVLSKSAIEALEDRF 206 I++ K+V ++S+I+ LE R+ Sbjct: 186 IIKFKKVVFTESSIKELEKRY 206 >gi|254495342|ref|ZP_05108266.1| 50S ribosomal protein L4 [Polaribacter sp. MED152] gi|85819696|gb|EAQ40853.1| 50S ribosomal protein L4 [Polaribacter sp. MED152] Length = 209 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S+D+F ++P + ++ +R G KSK R+E+ + Sbjct: 1 MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSIQAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLP 177 +++V+++ KTK V ++L+L + ++DG + N L++RN+ N ++ Sbjct: 121 KNLVVVEDFNFDTPKTKNFVDVLKSLELDAKKSLFVLDGE--NANVYLSSRNLKNSKVIK 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 IN Y +L +K+V+++ ++E + Sbjct: 179 ASEINTYGVLNANKIVITEGSLEGI 203 >gi|194857837|ref|XP_001969044.1| GG24171 [Drosophila erecta] gi|190660911|gb|EDV58103.1| GG24171 [Drosophila erecta] Length = 296 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + DIFA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDIFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +GGG GP P + LP R L L LS K +D+ +I+++ Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESVDIPT 200 Query: 134 CKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++L + +++I + N A+ ++ +NL+P G+NVY +L+ Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 261 LVLTVAAVKHLEQRL 275 >gi|269128515|ref|YP_003301885.1| 50S ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183] gi|268313473|gb|ACY99847.1| ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183] Length = 204 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF K ++ +V+ Q R G +K R +V G K Y QKGTGRAR Sbjct: 6 VELPAEIFDAKVSVPLIHQVVVAQWAAARQGTHATKTRGDVRGGGKKPYRQKGTGRARQG 65 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-K 135 S QF GGG GP P PKK+++ ALR AL+D+ I V+D+L+ E K Sbjct: 66 SVRAPQFAGGGTVHGPQPRDYTQRTPKKMKAAALRGALTDRARHGRIHVVDHLIEGEVPK 125 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK + R + + +++ + D + RN P+++LL +N YD++ +V + Sbjct: 126 TKVALAALREITQAKRVLVVTARGDELTWKSLRNEPSVHLLFEDQLNTYDVMVSDDVVFT 185 Query: 196 KSAIEAL 202 K+A +A Sbjct: 186 KAAYDAF 192 >gi|227494546|ref|ZP_03924862.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436] gi|226832280|gb|EEH64663.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436] Length = 212 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 3/202 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ + ++G+ G I + IF + ++ +V+ Q R G +K R +VA G Sbjct: 4 KVEITGVNGKSAGTIELPAAIFDAETNVPLIHQVVVAQLAAARQGTHATKTRGQVAGGGK 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S F GGG GP P PKK+++ AL ALSD+ + Sbjct: 64 KPYRQKGTGRARQGSIRAPHFTGGGVVHGPQPRDYSQRTPKKMKAGALYGALSDRARNGR 123 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V E TK T L L N L++ + D L+ RN+P +++L V Sbjct: 124 IHVVTAVVEGEKPSTKAARTLLEGLCGLRNTLVVV-SREDVTAVLSVRNLPQVHVLFVDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V ++ A+E Sbjct: 183 LNTYDVMRSENVVFTQVALETF 204 >gi|160942900|ref|ZP_02090139.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii M21/2] gi|158445801|gb|EDP22804.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii M21/2] gi|295103926|emb|CBL01470.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii SL3/3] Length = 207 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + +V +++G+ I +S+ +F + P ++ + V+ + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLA-NQRQGTQNTKIRMEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK Sbjct: 60 GGKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAA 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 120 NGNMVVVDKFACDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L KL++S A + LE+ Sbjct: 180 SVNTYDVLNADKLIISVDAAKKLEE 204 >gi|114675331|ref|XP_001163881.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 1 [Pan troglodytes] Length = 274 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 79 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 138 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 139 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 198 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 199 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 258 >gi|71083803|ref|YP_266523.1| 50S ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062] gi|109893617|sp|Q4FLL9|RL4_PELUB RecName: Full=50S ribosomal protein L4 gi|71062916|gb|AAZ21919.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062] Length = 207 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 113/201 (56%), Gaps = 3/201 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NLDG+ K I V + IF+ K + ++ VL + + +K+K ++E+ + SK+Y Q Sbjct: 7 NLDGK-KDSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGSTSKIYAQ 65 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFCSNDIMV 125 KGTG ARH+S+ F GGG A GP + L K + L++ +++K N++++ Sbjct: 66 KGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNKLNNLII 125 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 + ++ KTK + + + +++N+LII + + RNIPN+ + + + +D Sbjct: 126 FSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDINHFSAFD 185 Query: 186 ILRCSKLVLSKSAIEALEDRF 206 I++ K+V ++S+I+ LE R+ Sbjct: 186 IIKFKKVVFTESSIKELEKRY 206 >gi|15676070|ref|NP_273201.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58] gi|121634017|ref|YP_974262.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18] gi|161870914|ref|YP_001600094.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442] gi|218767167|ref|YP_002341679.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491] gi|254805813|ref|YP_003084034.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14] gi|304388944|ref|ZP_07370991.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC 13091] gi|46577147|sp|P61056|RL4_NEIMA RecName: Full=50S ribosomal protein L4 gi|46577148|sp|P61057|RL4_NEIMB RecName: Full=50S ribosomal protein L4 gi|166234693|sp|A1KRH4|RL4_NEIMF RecName: Full=50S ribosomal protein L4 gi|189029510|sp|A9M3W5|RL4_NEIM0 RecName: Full=50S ribosomal protein L4 gi|7225361|gb|AAF40601.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58] gi|120865723|emb|CAM09452.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18] gi|121051175|emb|CAM07446.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491] gi|161596467|gb|ABX74127.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442] gi|254669355|emb|CBA08442.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14] gi|254670742|emb|CBA06975.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha153] gi|304337078|gb|EFM03265.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC 13091] gi|316985673|gb|EFV64619.1| ribosomal L4/L1 family protein [Neisseria meningitidis H44/76] gi|319411373|emb|CBY91784.1| 50S ribosomal protein L4 [Neisseria meningitidis WUE 2594] gi|325129062|gb|EGC51911.1| ribosomal protein L4 [Neisseria meningitidis N1568] gi|325133055|gb|EGC55727.1| ribosomal protein L4 [Neisseria meningitidis M6190] gi|325135149|gb|EGC57775.1| ribosomal protein L4 [Neisseria meningitidis M13399] gi|325139033|gb|EGC61579.1| ribosomal protein L4 [Neisseria meningitidis ES14902] gi|325141157|gb|EGC63657.1| ribosomal protein L4 [Neisseria meningitidis CU385] gi|325143233|gb|EGC65572.1| ribosomal protein L4 [Neisseria meningitidis 961-5945] gi|325145340|gb|EGC67617.1| ribosomal protein L4 [Neisseria meningitidis M01-240013] gi|325197430|gb|ADY92886.1| ribosomal protein L4 [Neisseria meningitidis G2136] gi|325199356|gb|ADY94811.1| ribosomal protein L4 [Neisseria meningitidis H44/76] gi|325203263|gb|ADY98716.1| ribosomal protein L4 [Neisseria meningitidis M01-240355] gi|325205236|gb|ADZ00689.1| ribosomal protein L4 [Neisseria meningitidis M04-240196] Length = 206 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|55648223|ref|XP_512362.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 6 [Pan troglodytes] gi|114675325|ref|XP_001163982.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 3 [Pan troglodytes] gi|114675327|ref|XP_001164017.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 4 [Pan troglodytes] gi|114675329|ref|XP_001164062.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 5 [Pan troglodytes] Length = 263 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 >gi|296168558|ref|ZP_06850362.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896621|gb|EFG76260.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 217 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 3/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ DG+ +G I + ++F ++ +V+ Q R G +K R EV+ G Sbjct: 3 LKIDVKTPDGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 63 RKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYAQRTPKKMIAAALRGALSDRARNG 122 Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I + +V+ + + F D LI+ G + D + RN+P +++L Sbjct: 123 RIHAVTEIVAGQTPSTKNARAFLGTLTDRKKVLIVIG-RSDEAGAKSVRNLPGVHILTPD 181 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V S A+ A Sbjct: 182 QLNTYDVLLSDDVVFSVEALNA 203 >gi|2113867|emb|CAA73673.1| rplD [Mycobacterium bovis BCG] Length = 223 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ G I + ++F + ++ +V+ Q R G +K R EV+ Sbjct: 8 TLKIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGG 67 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 68 GRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 127 Query: 121 NDIMVIDNLV-----SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 I I LV S + +LV+ + L++ G + D + + RN+P +++ Sbjct: 128 GRIHAITELVEGQNPSTKSARAFLVS---LTERKQVLVVIG-RSDEGRRESVRNLPGVHI 183 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEA 201 L +N YD+LR +V S A+ A Sbjct: 184 LAPDQLNTYDVLRADDVVFSVEALNA 209 >gi|307297393|ref|ZP_07577199.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2] gi|306916653|gb|EFN47035.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2] Length = 227 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N+ G+ G + +SE +F ++P + ++ R + Q +R G + +K RSEV Sbjct: 1 MAQADVVNIAGQKVGTVELSESVFNVEPNEDLMFRYVNMQLSGRRAGLASAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG GP P L KK++ +ALR ALS + Sbjct: 61 GRKPWAQKHTGRARVGSTRSPLWRHGGVIHGPKPKDWSMKLTKKMKKVALRSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLD--RNFQLAARNIPNINL 175 +++V+D+L KTK L L L L + Q D +N +L+ +NI + + Sbjct: 121 GNLIVLDDLKFDRPKTKQLREVLNNLGLDKTQKTLFVLPWQKDEYQNVRLSGKNIYGVKV 180 Query: 176 L--------------PVQGINVYDILRCSKLVLSKSAIEALED 204 + + G+NVYDI+ KLV++ + +E+ Sbjct: 181 IIADNPGNKAVNSKENIDGLNVYDIVNHEKLVITADLVRKIEE 223 >gi|195034530|ref|XP_001988917.1| GH11428 [Drosophila grimshawi] gi|193904917|gb|EDW03784.1| GH11428 [Drosophila grimshawi] Length = 923 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 708 GMMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 767 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 768 HGSIRSPLFKGGGIVHGPRSPTSHFYMLPFYTRVLGLTSTLSVKLAQDDLHIIENVELPT 827 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +++ + + LIID ++ N A +I +NL+P G+NVY +L+ Sbjct: 828 RDAQFIRDLIAERNWGPSVLIIDKQEMFPENICYATDSIGYVNLMPSFGLNVYSMLKHDT 887 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A++ LE R Sbjct: 888 LVLTVEAVKHLEQRL 902 >gi|255067457|ref|ZP_05319312.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256] gi|261364856|ref|ZP_05977739.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC 25996] gi|261378042|ref|ZP_05982615.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC 14685] gi|296313366|ref|ZP_06863307.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea ATCC 43768] gi|313667442|ref|YP_004047726.1| 50S ribosomal protein L4 [Neisseria lactamica ST-640] gi|255048252|gb|EET43716.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256] gi|269145492|gb|EEZ71910.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC 14685] gi|288566905|gb|EFC88465.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC 25996] gi|296840077|gb|EFH24015.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea ATCC 43768] gi|308388359|gb|ADO30679.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha710] gi|313004904|emb|CBN86330.1| 50S ribosomal protein L4 [Neisseria lactamica 020-06] gi|325131085|gb|EGC53808.1| ribosomal protein L4 [Neisseria meningitidis OX99.30304] gi|325137201|gb|EGC59796.1| ribosomal protein L4 [Neisseria meningitidis M0579] gi|325203022|gb|ADY98476.1| ribosomal protein L4 [Neisseria meningitidis M01-240149] gi|325207179|gb|ADZ02631.1| ribosomal protein L4 [Neisseria meningitidis NZ-05/33] Length = 206 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|118466008|ref|YP_883605.1| 50S ribosomal protein L4 [Mycobacterium avium 104] gi|254776906|ref|ZP_05218422.1| 50S ribosomal protein L4 [Mycobacterium avium subsp. avium ATCC 25291] gi|166234686|sp|A0QL17|RL4_MYCA1 RecName: Full=50S ribosomal protein L4 gi|118167295|gb|ABK68192.1| ribosomal protein L4/L1 family protein [Mycobacterium avium 104] Length = 217 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 3/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ G Sbjct: 3 LKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 63 RKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNG 122 Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I I LVS + + F + L++ G + D + RN+P +++L Sbjct: 123 RIHAITELVSGQTPSTKSAKAFLGTLTERKQVLVVIG-RSDEAGAKSVRNLPGVHILAPD 181 Query: 180 GINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 182 QLNTYDVLRADDVVFSVEALRA 203 >gi|195437861|ref|XP_002066858.1| GK24328 [Drosophila willistoni] gi|194162943|gb|EDW77844.1| GK24328 [Drosophila willistoni] Length = 296 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHAKTRAEVRGGGRKPWPQKGQGRAR 140 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R L L LS K +D+ +I++ Sbjct: 141 HGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESTDIPT 200 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + +++ + LI+D + N A + +NL+P G+NVY +L+ Sbjct: 201 TEPQFIKDLIDERQWGPSVLIVDKADIFPENICYATDELGFVNLMPTFGLNVYSMLKHDT 260 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A++ LE R Sbjct: 261 LVLTVDAVKHLEQRL 275 >gi|186684509|ref|YP_001867705.1| 50S ribosomal protein L4 [Nostoc punctiforme PCC 73102] gi|226730699|sp|B2ITQ4|RL4_NOSP7 RecName: Full=50S ribosomal protein L4 gi|186466961|gb|ACC82762.1| ribosomal protein L4/L1e [Nostoc punctiforme PCC 73102] Length = 212 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 8/212 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRLALRTAFVGRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLV---TRFRALDLSNALIIDGCQLDR-NFQLAARNIPNIN 174 +D++V++ ++ KTK LV R+ + S AL+I D N L+ARNI N+ Sbjct: 119 DDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLK 178 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+D+L K+V++ SA+E +++ + Sbjct: 179 LIAANQLNVFDLLHADKIVVTASALEKIQEVY 210 >gi|86739296|ref|YP_479696.1| 50S ribosomal protein L4 [Frankia sp. CcI3] gi|109893595|sp|Q2JFH5|RL4_FRASC RecName: Full=50S ribosomal protein L4 gi|86566158|gb|ABD09967.1| LSU ribosomal protein L4P [Frankia sp. CcI3] Length = 245 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 ++V +G + G + + +F + ++ +V+ Q R G +K R EV G K Sbjct: 16 VAVHAPNGGEGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRK 75 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N + Sbjct: 76 PYRQKGTGRARQGSLRAPQFTGGGTVHGPTPRRYDQRTPKKMKAAALRGALSDRARNNRV 135 Query: 124 MVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ +LVS E TK VT R + + +++ + D + RN+ ++LL +N Sbjct: 136 HVVSSLVSGETPSTKSAVTALRTIADTRRVLVVASRSDELTWKSLRNVAAVHLLDPGQLN 195 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V + A+ A Sbjct: 196 TYDVLVSDDVVFIEDALAAF 215 >gi|239980055|ref|ZP_04702579.1| 50S ribosomal protein L4 [Streptomyces albus J1074] gi|291451912|ref|ZP_06591302.1| 50S ribosomal protein L4 [Streptomyces albus J1074] gi|291354861|gb|EFE81763.1| 50S ribosomal protein L4 [Streptomyces albus J1074] Length = 217 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKSRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK + +++ + D L+ARN+P +++L Sbjct: 121 DRIHVVTGVVEGEVSTKAAKGLLGKISERKNVLLVIERSDETALLSARNLPQVHILDPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|139438581|ref|ZP_01772097.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC 25986] gi|133776120|gb|EBA39940.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 5/197 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKGRSEVA 58 M + V+N +G+ ++ +++ ++P ++ +++ Q SWR+ G +KGRSEV+ Sbjct: 1 MAKFEVKNSEGKKVAEAELAAEVYGIEPNIHVMHHIVKCQMASWRQ--GTQSAKGRSEVS 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S +Q+R GG F P P + K LA+R ALS K Sbjct: 59 GGGKKPWRQKGTGRARQGSIRAAQWRHGGVVFAPKPRSYAKRMNNKEVKLAMRSALSAKL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLP 177 +++++D+ ++ TK V +AL L L I D N L+ RNIP ++ Sbjct: 119 ADGELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVRDEDVNAYLSFRNIPKTFIIT 178 Query: 178 VQGINVYDILRCSKLVL 194 N YD++ + +++ Sbjct: 179 ADEANTYDLVNNNAVLM 195 >gi|194334860|ref|YP_002016720.1| 50S ribosomal protein L4 [Prosthecochloris aestuarii DSM 271] gi|226730706|sp|B4S5M6|RL4_PROA2 RecName: Full=50S ribosomal protein L4 gi|194312678|gb|ACF47073.1| ribosomal protein L4/L1e [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G VIS+ + +FA K + + ++ KR G K K RSEV Sbjct: 1 MELKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +K++ LA R ALS K Sbjct: 61 GKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+VI++ ++ KT+ + LD L++ + + + RNIP +N+ Sbjct: 121 GRIIVIEDFTFEQIKTRQFADILKNLGLDQKKTLVLL-PEHNEIINRSGRNIPVLNIRVA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + YDIL C +V+ K+A++ +E+ Sbjct: 180 DQASTYDILDCQTVVMQKAAVKKIEE 205 >gi|78186071|ref|YP_374114.1| 50S ribosomal protein L4 [Chlorobium luteolum DSM 273] gi|109893616|sp|Q3B6G0|RL4_PELLD RecName: Full=50S ribosomal protein L4 gi|78165973|gb|ABB23071.1| LSU ribosomal protein L4P [Chlorobium luteolum DSM 273] Length = 208 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V+++ +DIF + + + ++ KR G KSK R+EV Sbjct: 1 MELKVLNTAGAETGEVVTLRDDIFGAEVSEHAIWLDVKSILANKRQGTHKSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +KV+ LA R A S K Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPTPHGYDQKVNRKVKQLARRSAFSAKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 I+++++ E KTK + R L L I+ D N +A RNI +N++ Sbjct: 121 GRILIVEDFALAEIKTKPVADMLRNLGLDAKKILM-LTPDYNMVIARSGRNIEALNIMTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + + YDIL ++ K+A++ LE+ Sbjct: 180 EKASTYDILNSHTVLFQKTALKKLEE 205 >gi|157363443|ref|YP_001470210.1| 50S ribosomal protein L4 [Thermotoga lettingae TMO] gi|166990954|sp|A8F4R2|RL4_THELT RecName: Full=50S ribosomal protein L4 gi|157314047|gb|ABV33146.1| ribosomal protein L4/L1e [Thermotoga lettingae TMO] Length = 226 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N+ GE G + +DIF ++P ++ R + +Q +R G +K RSEV+ Sbjct: 1 MAVVDLYNMKGEKVGTQELKDDIFNIEPNFDVMWRYVDYQLSLRRAGTVSTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRARH S +R GG A GP P LPKK++ LAL+ ALS +F Sbjct: 61 GRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPKKMKKLALKSALSQRFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----NFQLAARNIP----- 171 +I+V+D++ KTK + +A I+ R N +L+ +NIP Sbjct: 121 GNIIVVDDIGFDSSKTKNMRQLIKAFGFEGKKILFVLPWKRSEYENVKLSCKNIPGLKAI 180 Query: 172 ----------NINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N +++ + G+NV+DIL KLVL++ + +E+ Sbjct: 181 IADNPGATRENESIMRIDGLNVFDILNHEKLVLTRDMVMKIEE 223 >gi|330997364|ref|ZP_08321215.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841] gi|329570738|gb|EGG52454.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841] Length = 209 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G + +++ IF ++P ++ ++ +R G +KSK RSEV+ + Sbjct: 1 MEVSVLNIKGEDTGRKVLLNDSIFNIEPNDHVIYLDVKQYLANQRQGTAKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 N I+V+++ + KTK + L + ++ G ++N L+ARNI +N++ Sbjct: 121 NAIVVVEDFTMEVPKTKQFIEIINNLKVGGKKALFVLPGA--NKNVYLSARNIERVNVMT 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +N Y +L +V+++++++ +++ Sbjct: 179 AAALNTYKVLNADVMVVTENSLKVVDE 205 >gi|225011648|ref|ZP_03702086.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A] gi|225004151|gb|EEG42123.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A] Length = 209 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N++G++ G I + + +F ++P + ++ KR G K+K R+E+ + Sbjct: 1 MELNVLNIEGKETGRKIKLDKAVFGIEPNDHAIYLDVKQHLANKRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P + KKV+ LA ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRDYSQKVNKKVKRLARMSALSIKANQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ + +TK + AL L++ ++++ G +L++N L++RN+ N ++ Sbjct: 121 KSIVVLEDFQMDQPQTKNYLKMLAALGLADKKSILVLG-ELNKNVYLSSRNLKNSKVVIN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N Y I + L+ S+ AI LE Sbjct: 180 SELNTYSISNANSLIFSEGAIAGLE 204 >gi|170780734|ref|YP_001709066.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. sepedonicus] gi|169155302|emb|CAQ00405.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. sepedonicus] Length = 218 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V + G G + + IF ++ ++ +V+ Q R G K+KGR EV+ G Sbjct: 6 QLDVLDATGAVTGSVDLPASIFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ Sbjct: 66 KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125 Query: 123 IMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++L + + TK +V + S ++I + D + RNIP +++L + Sbjct: 126 LHVIESLSAGDVPSTKTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +K A +A Sbjct: 186 NAYDVLVSDDIVFTKGAFDAF 206 >gi|269215704|ref|ZP_06159558.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122] gi|269131191|gb|EEZ62266.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122] Length = 207 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 101/204 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ +++ G+ ++ +F ++P ++ +V+R Q R G +K R +V+ Sbjct: 1 MAKIEIKDASGKTVKEADLNAAVFGIEPNVPVMHQVVRSQQAALRQGTHSTKTRGQVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG FGP P + +K LA R ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPHWVGGGTVFGPHPRSYAFRVNRKEVKLAERSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ +E TK V +AL L I D L+ RNIPN+ ++PV Sbjct: 121 GQLTVVEGFDFEEPSTKKAVAALKALGLDRRTTIVIGNDDVVTYLSFRNIPNVTVIPVAD 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + +I+ LVL+ +A+ LE+ Sbjct: 181 AHTLEIIDNKALVLTVAALNRLEE 204 >gi|59802159|ref|YP_208871.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090] gi|194099924|ref|YP_002003062.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945] gi|239997927|ref|ZP_04717851.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|240015095|ref|ZP_04722008.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI18] gi|240017544|ref|ZP_04724084.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA6140] gi|240081687|ref|ZP_04726230.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|240113965|ref|ZP_04728455.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|240116699|ref|ZP_04730761.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|240118921|ref|ZP_04732983.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|240122167|ref|ZP_04735129.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID24-1] gi|240124459|ref|ZP_04737415.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|240124672|ref|ZP_04737558.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|240129135|ref|ZP_04741796.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|254494720|ref|ZP_05107891.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291] gi|268593777|ref|ZP_06127944.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|268597784|ref|ZP_06131951.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|268600029|ref|ZP_06134196.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|268602367|ref|ZP_06136534.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|268604630|ref|ZP_06138797.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|268683088|ref|ZP_06149950.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|268683246|ref|ZP_06150108.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|268687518|ref|ZP_06154380.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|293398201|ref|ZP_06642406.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62] gi|75432357|sp|Q5F5S8|RL4_NEIG1 RecName: Full=50S ribosomal protein L4 gi|226730698|sp|B4RQX9|RL4_NEIG2 RecName: Full=50S ribosomal protein L4 gi|59719054|gb|AAW90459.1| putative 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090] gi|193935214|gb|ACF31038.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945] gi|226513760|gb|EEH63105.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291] gi|268547166|gb|EEZ42584.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|268551572|gb|EEZ46591.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|268584160|gb|EEZ48836.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|268586498|gb|EEZ51174.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|268588761|gb|EEZ53437.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|268623372|gb|EEZ55772.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|268623530|gb|EEZ55930.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|268627802|gb|EEZ60202.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|291611464|gb|EFF40534.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62] gi|317165377|gb|ADV08918.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae TCDC-NG08107] Length = 206 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L ++ KTK + + L L L + +LD N LA+RN+PN+ +L Q Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFVTK-RLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|193211852|ref|YP_001997805.1| 50S ribosomal protein L4 [Chlorobaculum parvum NCIB 8327] gi|226730637|sp|B3QR77|RL4_CHLP8 RecName: Full=50S ribosomal protein L4 gi|193085329|gb|ACF10605.1| ribosomal protein L4/L1e [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G + G V+++++DIFA++ + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNIQGAETGEVVTLNDDIFAVEVSEHAMYLDVKAILANRRQGTHKTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +KV+ LA R ALS K + Sbjct: 61 GKKPYRQKGTGNARQGSSRSPIMVGGGTIFGPQPRSYEQKVNRKVKQLARRSALSSKAAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KT+ + + L L+ ++ D + RNI +N+ Sbjct: 121 GQIVVVEDFSLESIKTRPVADMLKNLGLAEKKTLLMMPHYDNVVSTSGRNIEKLNIQVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + YDIL ++ K+A++ +E+ Sbjct: 181 QASTYDILNSQAVLFQKAALQKIEE 205 >gi|330752349|emb|CBL87302.1| ribosomal protein L4 [uncultured Sphingobacteria bacterium] Length = 208 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L + N G + G +++ ++IF ++P + ++ KR G S + +V + Sbjct: 1 MKLKIVNTSGAETGKEVTLPKEIFGVEPNDHAIYLDVKQHLANKRSGTHSSTEKGDVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ GP P L KK++ +A ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMHGPRPRDYRFKLNKKLKLVARASALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTK-YL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 +IMVID + KTK YL +T + D L++ ++N L++RNIPN ++ Sbjct: 121 KEIMVIDQISMDSVKTKGYLSVLTSLKMNDKKTLLLV--PDYNKNVYLSSRNIPNAQVMK 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y+IL + ++L + AI+ L++ F Sbjct: 179 ASDVNTYNILNANNIILEEGAIDKLKELF 207 >gi|184200263|ref|YP_001854470.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201] gi|183580493|dbj|BAG28964.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201] Length = 206 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 2/187 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF + +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 8 VELPAEIFDAQTNVALLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S GGG GP P PKK+++ ALR ALSD+ + I V+ L E T Sbjct: 68 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVVAELGGAEPST 127 Query: 137 KYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K R++ + N L++ G D N L+ RN+ N++ + +N YD+L +V + Sbjct: 128 KAAKQALRSISERKNLLVVLGRGED-NAALSVRNLVNVHAVYADQLNTYDVLVSDDVVFT 186 Query: 196 KSAIEAL 202 K+A E+ Sbjct: 187 KAAYESF 193 >gi|221194347|ref|ZP_03567404.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626] gi|221185251|gb|EEE17641.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626] Length = 208 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 7/199 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N +G+ G +S D++ ++P ++ +V+ Q+ R G +K R EV+ Sbjct: 1 MSKYEIKNTEGKKVGDADLSADVYGIEPNIPVVHQVVTCQAASLRQGTHSTKNRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG FGP P + K+ LA+R LS K Sbjct: 61 GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRVNSKMVKLAMRSVLSGKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLL 176 ++++++DNL TK V +AL L N L+ D D N L+ RN+ +++ Sbjct: 121 SELVLVDNLEFDTPSTKQAVAVLKALGLENKRVTLLVPDD---DINTYLSFRNLKKVSIF 177 Query: 177 PVQGINVYDILRCSKLVLS 195 V ++ + LV+S Sbjct: 178 GVSEATTRSLIDNAALVMS 196 >gi|306821619|ref|ZP_07455217.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550364|gb|EFM38357.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 208 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +++G+ + +SE +FA K + + ++ KR G +K R+EV Sbjct: 1 MPKIDVLDINGKVVEQMEISEALFAAKVNEHCVYEAVKNHLANKRQGTQCTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG F P P + + KK++ +AL+ L+DK + Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYKINKKIKRIALKSVLTDKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V++ LV + KTK + L LS + + D + RNI +++ Sbjct: 121 NKLVVLNELVISDAKTKAFAQVMKNLQLSGVKTLFVTKENDPEVVRSGRNIKGVDITFAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YDI+ LV++K A+ ++ F Sbjct: 181 LINTYDIINHEVLVMTKDAVIKAQEVF 207 >gi|303284373|ref|XP_003061477.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456807|gb|EEH54107.1| predicted protein [Micromonas pusilla CCMP1545] Length = 252 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 95/180 (52%), Gaps = 6/180 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ RV+ WQ + R G K+K R EV+ T K QKG GRAR S Q RGGG A G Sbjct: 33 LVHRVVHWQRNKARKGRKKTKTRGEVSGTTRKARPQKGGGRARVGSLRAPQMRGGGVAHG 92 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK-ECKTKYLVTRFRALDLSN 150 PV AL K+VR L+ ALS K +M++ + E KTK+L R L L N Sbjct: 93 PVVRSYETALNKRVRRAGLKVALSAKLAEGRVMLVRSTHDGVEPKTKWLDERLDKL-LGN 151 Query: 151 ALIIDGCQLD----RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + G + N + A+RN+P ++++ +G+NVYDILR L ++ A+ L R Sbjct: 152 QSLAAGERSHSTWISNAKRASRNMPYVHVMHQRGLNVYDILRYRSLAMTPDALRELVRRL 211 >gi|225076396|ref|ZP_03719595.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens NRL30031/H210] gi|241759656|ref|ZP_04757757.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114] gi|261380560|ref|ZP_05985133.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703] gi|319639550|ref|ZP_07994297.1| 50S ribosomal protein L4 [Neisseria mucosa C102] gi|224952244|gb|EEG33453.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens NRL30031/H210] gi|241320028|gb|EER56409.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114] gi|284796528|gb|EFC51875.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703] gi|317399121|gb|EFV79795.1| 50S ribosomal protein L4 [Neisseria mucosa C102] Length = 206 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G ++VS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLAVSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVNHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|158337811|ref|YP_001518987.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017] gi|189029488|sp|B0C1D4|RL4_ACAM1 RecName: Full=50S ribosomal protein L4 gi|158308052|gb|ABW29669.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017] Length = 210 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VRN GED G + + + I+ R LR Q R G + SK RSEV Sbjct: 1 MVNCVVRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + + + Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRLALRTAFASR--A 118 Query: 121 NDIMVI----DNLVSKECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 D++V+ DNL KTK L+ R+ S L+I + D L+ARN+ + Sbjct: 119 EDLVVVEDFGDNL--SRPKTKDLLEAMGRWGVNADSKTLLILADKHD-TIYLSARNVEKL 175 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NVYD+L ++V ++SAI +++ + Sbjct: 176 KLILASNLNVYDLLAADQIVATQSAIAKIQEVY 208 >gi|254383171|ref|ZP_04998525.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1] gi|194342070|gb|EDX23036.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1] Length = 216 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + +++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNVLLVVERADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A+E+ Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202 >gi|319948722|ref|ZP_08022843.1| 50S ribosomal protein L4 [Dietzia cinnamea P4] gi|319437624|gb|EFV92623.1| 50S ribosomal protein L4 [Dietzia cinnamea P4] Length = 229 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L VR G G + + +IF ++P ++ +V+ Q R G +K R EV+ G Sbjct: 10 LKLDVRTPAGSTDGSVELPAEIFGVEPNLPLMHQVVVAQLAAARQGTHSTKTRGEVSGGG 69 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+++ ALR ALSD+ S Sbjct: 70 RKPFRQKGTGRARQGSTRAPAYTGGGTVHGPKPRDYSQRTPKKMKAAALRGALSDRAASE 129 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+ V + + V F D LI+ G + D +A N+ +++ + Sbjct: 130 RIHVVTEFVEGQKPSTSGVRDFLGTLSDRKKFLIVVGRE-DLAAWRSAANLDHVHPIAPD 188 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A++A Sbjct: 189 QLNTYDVLNADDVVFSVEALDAF 211 >gi|289523368|ref|ZP_06440222.1| ribosomal protein L4/L1 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503060|gb|EFD24224.1| ribosomal protein L4/L1 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 208 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +DG+ G +++++D+FA + + +V+ +R G +K R EV Sbjct: 1 MPTVDVIGIDGQKVGEVALADDVFAARIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GG GP P + KKV+ LA++ ALS K Sbjct: 61 GRKPWRQKHTGRARHGSIRSPLWIKGGVVHGPKPRSYDQKVNKKVKQLAIKSALSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N +++++ + + KTK + A + LI+ L + +AARNIP +L V Sbjct: 121 NKLILVEGIETMSPKTKDMCAFLANAQAQAKPLIVIHESLPSIY-MAARNIPGTRVLHVD 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 INVY+IL L+L+K A + LE+ + Sbjct: 180 SINVYEILNHEHLILTKGAAQRLEEVY 206 >gi|309379158|emb|CBX22289.1| 50S ribosomal protein L4 [Neisseria lactamica Y92-1009] Length = 206 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L + KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTVETPKTKVFAEQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|282933637|ref|ZP_06339002.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] gi|281302242|gb|EFA94479.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] Length = 158 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 86/154 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII 154 N+++++D L KTK L++ + +++ Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLV 154 >gi|168702385|ref|ZP_02734662.1| 50S ribosomal protein L4 [Gemmata obscuriglobus UQM 2246] Length = 235 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 19/220 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V N G + G + ++ F K + ++ V+ +R G + R +VA + Sbjct: 8 LKVPVVNRSGAEVGTVDINPSEFGGKISRQLMHDVVLMYLANQRAGTHHTLRRGQVAGST 67 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG AR +K ++ RGGG A GP P + LPKK A R A+ KF Sbjct: 68 KKLFRQKGTGNARAGTKRTNKRRGGGTAKGPKPRDYEYHLPKKSVKAATRMAILSKFLDG 127 Query: 122 DIMVIDNLVSKECKTKYLVTRFRA------------------LDLSNALIIDGCQ-LDRN 162 ++++D KTK +V +A L L++ ++ G + LD N Sbjct: 128 QVVILDEFALAAPKTKEVVGVLKAIKIGKKKKKTEQGEKEIELTLADTTVLIGTEKLDPN 187 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +ARNI + +LP N Y +L+ +LVL+K+A EAL Sbjct: 188 VYKSARNIEGVKVLPAAEFNCYTVLKQKRLVLTKAAFEAL 227 >gi|291298711|ref|YP_003509989.1| 50S ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728] gi|290567931|gb|ADD40896.1| ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 7/203 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V + G+ G +++ ++F + ++ +V+ Q KR G +K R V+ G Sbjct: 3 LEVNVTDATGKKTGTVTLPAELFEREVNIHLMHQVVTAQLAAKRQGTHATKTRGAVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR S QF GGG GP P PKK+++ AL ALSD+ S Sbjct: 63 AKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALASALSDRAASE 122 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQL---AARNIPNINLLP 177 + V+ L+ + KTK + RA + +++ LDR +L + RN PN++LL Sbjct: 123 VVHVVTGLLDGDTPKTKDALKALRATTEAKKVLM---VLDREDELTWKSLRNDPNVHLLF 179 Query: 178 VQGINVYDILRCSKLVLSKSAIE 200 +N YD+L LV SK+A + Sbjct: 180 HDQLNTYDVLVNDALVFSKAAFD 202 >gi|328787688|ref|XP_001120958.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Apis mellifera] Length = 280 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 3 ELSVRNLDGEDK---GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ + NLD ++ G++ + D++ P+ I+ + ++WQ + + + +K RSEV Sbjct: 51 EVWLENLDTIERKKLGLMFLHPDVYGTAPRIDIIHQNVQWQKMYRFVSYAHTKVRSEVRG 110 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S +RGGG GP P + LP R L LS K Sbjct: 111 GGKKPWRQKGLGRARHGSIRSPLWRGGGVIHGPRSPTTHFYMLPFYNRVNGLTSTLSVKL 170 Query: 119 CSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ +I +L ++ Y+ + R S + + N A I ++NL+ Sbjct: 171 AQDDLYIIKDLEIPSNESSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHVNLM 230 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDR 205 PV G+NVY +L+ LVL++ A +ED+ Sbjct: 231 PVYGLNVYSMLKHDTLVLTERAARLIEDK 259 >gi|68536922|ref|YP_251627.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411] gi|109893588|sp|Q4JT48|RL4_CORJK RecName: Full=50S ribosomal protein L4 gi|68264521|emb|CAI38009.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411] Length = 217 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V DG+ G + + IF + ++ +V+ Q KR G +K R V+ G Sbjct: 4 LKLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGMVSGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHD 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ LV + + F R D + L++ + D + N+P ++ L Sbjct: 124 RIHVVEELVPGQTPSTKAARAFIERLTDRKSVLVV-LTREDVTAWKSVNNLPQVHTLVND 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 183 QLNTYDVLNADDVVFSVEALNAF 205 >gi|329945685|ref|ZP_08293415.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str. F0386] gi|328528493|gb|EGF55467.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str. F0386] Length = 214 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 2/193 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + ++F ++ +V+ Q R G +K R +V G K Y QKGT Sbjct: 14 GKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGRKPYRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + + VI V Sbjct: 74 GRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFV 133 Query: 131 SKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + TK + R L AL+I Q D + +L+ RN P ++L +N YD+L+ Sbjct: 134 TTTVPSTKNALVALRNLTDRKALVIVDRQDDLS-RLSLRNAPEAHVLWADQLNTYDVLKS 192 Query: 190 SKLVLSKSAIEAL 202 +V + S ++A Sbjct: 193 DDVVFTASGLDAF 205 >gi|288801099|ref|ZP_06406555.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332033|gb|EFC70515.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 209 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 114/204 (55%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF + P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGITPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGGRVFGPKPRDYRFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + IM++++ + KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 SAIMILEDFNLEAPKTKEFVNVVKNLKIDSKKVLLLLPEVNKNVYLSARNLQRSEVMLAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L LV ++ ++E ++ Sbjct: 181 TLNAYKVLNADVLVFTEKSLEVVD 204 >gi|195114622|ref|XP_002001866.1| GI14673 [Drosophila mojavensis] gi|193912441|gb|EDW11308.1| GI14673 [Drosophila mojavensis] Length = 911 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + D+FA +P+ ++ + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 696 GLMELHPDVFAAQPRVDVIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 755 Query: 75 HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S F+GGG GP P + LP R + L LS K +D+ +I+++ Sbjct: 756 HGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHIIEDVEIPT 815 Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +++ + + + LI+D + N A +I +NL+P G+NVY +L+ Sbjct: 816 KDAQFIRDLIQERNWGPSVLIVDKHDVFPENICYATDSIGYVNLMPAYGLNVYSMLKHDT 875 Query: 192 LVLSKSAIEALEDRF 206 LVL+ A++ LE+R Sbjct: 876 LVLTVEAVKHLEERL 890 >gi|281358744|ref|ZP_06245220.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548] gi|281314771|gb|EFA98808.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548] Length = 209 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L + + G G + E + L K +Q + V+ + + +R G + +K R EV+ G+ Sbjct: 5 LDILDCKGARVGEYVIPEGVIELEKGEQAVHDTVVAYLAG-QRAGTACTKTRGEVSGGGA 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKG GRAR S + GGG FGP P + KKV LAL+ ALS++ D Sbjct: 64 KPFRQKGMGRARAGSSRSPVWVGGGTIFGPRPRSFAKKVNKKVLQLALKRALSERIVEGD 123 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D + KT+ + L+++N ++I +LD A NIPN+ L + Sbjct: 124 LVLLDKFELADHKTRNAFAILKNLNVANETVMISLPELDAASVCATGNIPNVVLRKTDTV 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY++LR KL+ +K A++A R Sbjct: 184 NVYELLRFKKLLFTKDALDAFIQRL 208 >gi|260779502|ref|ZP_05888392.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC BAA-450] gi|260604311|gb|EEX30615.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC BAA-450] Length = 200 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVAGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITAEAVKQVEE 197 >gi|56751875|ref|YP_172576.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|81301040|ref|YP_401248.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 7942] gi|3122743|sp|O24690|RL4_SYNP6 RecName: Full=50S ribosomal protein L4 gi|109893647|sp|Q31L08|RL4_SYNE7 RecName: Full=50S ribosomal protein L4 gi|2446891|dbj|BAA22450.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|56686834|dbj|BAD80056.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|81169921|gb|ABB58261.1| LSU ribosomal protein L4P [Synechococcus elongatus PCC 7942] Length = 210 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 20/217 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +++ G+ G I+V + + I+ R L Q R G SK RSEV Sbjct: 1 MVDYVIQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + S Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTALISR--S 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-----------LDRNFQLAARN 169 D++V+ + ++R + D++ AL G + D+N +L+ RN Sbjct: 119 ADLVVVQEFADQ-------ISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRN 171 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +PN+ L+ +N++D+L ++V + +A+E +++ + Sbjct: 172 LPNVKLITATNLNIFDLLNADRIVSTSAALEKIQEVY 208 >gi|114675333|ref|XP_001163944.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 2 [Pan troglodytes] Length = 221 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYLV 140 ++D+L +YL Sbjct: 188 HIMDSLELPTGDPQYLT 204 >gi|300782609|ref|YP_003762900.1| 50S ribosomal protein L4 [Amycolatopsis mediterranei U32] gi|299792123|gb|ADJ42498.1| large subunit ribosomal protein L4 [Amycolatopsis mediterranei U32] Length = 229 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ G+ G + + E+IF ++ ++ +V+ Q R G +K R EV Sbjct: 1 MTSVELKTPAGKADGTVDLPEEIFDVQANVALMHQVVVAQQAAARQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL---AARNIPNINLLP 177 + V+ LV+ E + A ++ L R+ +L + RN+P +++L Sbjct: 121 GQLHVVTELVTGEKPNTKVAKAALAAVTLAKRVL--VVLHRDDELSWVSLRNLPEVHILW 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A +A Sbjct: 179 ADQLNTYDVLVNDDVVFTKAAYDAF 203 >gi|224827018|ref|ZP_03700115.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002] gi|224600684|gb|EEG06870.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002] Length = 206 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ G+ + SE +F + + ++ +V+ R K R+EV ++ Sbjct: 1 MELKVINVQGQAVEGLQASEGLFGREYNEALVHQVVTAFLANARSANRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPIWRGGGRTFPNSPDENFSHKVNRKMFRAGMAAILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+DN + KTK V +++ + L I ++D N L++RN+PN+ ++ Q Sbjct: 121 ERLIVVDNFAVETPKTKEFVGLVKSMGIEQGLFITN-EMDENLYLSSRNLPNVLVIETQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V+++ A++ LE+++ Sbjct: 180 VDPYSLLRFKKIVITRDAVKQLEEQW 205 >gi|315605900|ref|ZP_07880931.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str. F0310] gi|315312182|gb|EFU60268.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str. F0310] Length = 216 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 14/212 (6%) Query: 1 MIELSVRNLD-----GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 MI RN+D G+ G +S+ IF + ++ +V+ Q R G +K R Sbjct: 1 MIMADDRNVDVIDLTGKKVGSVSLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRG 60 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 +VA G K + QKGTG AR S F GGG GP P PKK++ ALR ALS Sbjct: 61 QVAGGGKKPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALS 120 Query: 116 DKFCSNDIMVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAA---RNI 170 D+ ++ I V+ L E TK + RA+ + AL++ L+R +L A RN+ Sbjct: 121 DRARADRIHVVTALFEGEKPSTKAALAALRAIVEDRQALVV----LERGNELTALSLRNV 176 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 P +++L +N YD+L +V +++A+E+ Sbjct: 177 PEVHVLWADQLNTYDVLDADDIVFTQAALESF 208 >gi|89076769|ref|ZP_01163042.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34] gi|89047582|gb|EAR53196.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34] Length = 200 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ G +LD N LAARN+ +++ I Sbjct: 116 RLIVVDNFTLEAPKTKALVAKLKELELTDALIVTG-ELDENLFLAARNLYKVDVRDAAAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ +A++A+E+ Sbjct: 175 DPVSLIAFDKIVMTAAAVKAVEE 197 >gi|119502925|ref|ZP_01625010.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080] gi|119461271|gb|EAW42361.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080] Length = 205 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G +SVSE FA + + ++ +V+ R G K RSEVA G Sbjct: 1 MELNIVKPGNAAGGTVSVSEATFAREYNEALVHQVVTAYLAGGRQGTRAQKTRSEVAGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P H + KK+ A+R LS+ ++ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQDHSHKVNKKMYRAAMRSILSELARTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ ++ KTK L+ + + DL N LI+ G +D+N LAARN+ + + V Sbjct: 121 RLVVVESFDMEQPKTKLLLQQLKGFDLENVLIV-GNVVDQNLYLAARNLHKVEVCDVDAA 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ E+ Sbjct: 180 DPVSLIAFDKVMVTVDAVKKFEE 202 >gi|71891976|ref|YP_277706.1| 50S ribosomal protein L4 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|109893577|sp|Q493K7|RL4_BLOPB RecName: Full=50S ribosomal protein L4 gi|71796082|gb|AAZ40833.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 210 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 +EL VR+ E D SVS++IF Q ++ +V+ R G K RSEV Sbjct: 1 MELEVRDFTTEINILDSEKFSVSDEIFKCPFNQALIHQVISTYLTNSRQGTRSQKSRSEV 60 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 + + K + QKGTGRAR S +R GG F P + + KK+ A+R LS Sbjct: 61 SGSNKKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPKLYAQKINKKMYRGAIRSILSKL 120 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 C N + ++ NL KE KTK L+ + R + +++I LD+N LA+RN+ I + Sbjct: 121 VCDNRLFLVRNLFIKEPKTKLLLEKLRTITSKKSILIFTDFLDKNLLLASRNVHKIEVRT 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ + +++ + I+ +E + Sbjct: 181 ATHIDPVSLINFNVTLIADNVIKKIEKQL 209 >gi|284034001|ref|YP_003383932.1| 50S ribosomal protein L4/L1e [Kribbella flavida DSM 17836] gi|283813294|gb|ADB35133.1| ribosomal protein L4/L1e [Kribbella flavida DSM 17836] Length = 237 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 9/193 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + ++F ++ ++ +V+ Q R G K K R EV+ G+K Y QKGTGRAR Sbjct: 18 GSAELPAELFDVQVNIPLIHQVVVAQLAAARQGTHKVKSRGEVSGGGAKPYRQKGTGRAR 77 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S QF GGG GP P PKK+ + ALR ALSD+ + V++N V + Sbjct: 78 QGSTRAPQFTGGGVVHGPTPRNYSQRTPKKMIAAALRGALSDRARDGRVFVVENFVDGDT 137 Query: 135 -KTKYLVTRFRALD-LSNALIIDGCQLDRNFQ---LAARNIPNINLLPVQGINVYDILRC 189 TK V + L AL++ +DR+ + L+ RN+P ++L+ +N YD+L Sbjct: 138 PSTKAAVKALTEITGLVKALVV----IDRDDELTWLSLRNVPTVHLIAYDQLNAYDVLCS 193 Query: 190 SKLVLSKSAIEAL 202 +V +++A++ Sbjct: 194 DAVVFTRAALDGF 206 >gi|289641165|ref|ZP_06473333.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata] gi|289509106|gb|EFD30037.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata] Length = 263 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 1/196 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G + G + + +IF + ++ +V+ Q R G ++ R EV G K Y QKGT Sbjct: 35 GGEAGSVDLPGEIFDVALNVPLIHQVVVAQLAAARQGTHSTRTRGEVRGGGRKPYRQKGT 94 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + V+ + V Sbjct: 95 GRARQGSLRAPQFTGGGVVHGPKPRSYEQRTPKKMKAAALRGALSDRARGGRVHVVSSFV 154 Query: 131 SKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 S + TK VT R + +++ D + RNIP+++LL +N YD+L Sbjct: 155 SGDTPSTKTAVTALRTITDVRRVLVVVDHTDELTWKSLRNIPSVHLLDPGQLNTYDVLVS 214 Query: 190 SKLVLSKSAIEALEDR 205 +V ++ A+ +R Sbjct: 215 DDVVFTRDALATFVER 230 >gi|307718207|ref|YP_003873739.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM 6192] gi|306531932|gb|ADN01466.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM 6192] gi|315186330|gb|EFU20091.1| LSU ribosomal protein L4P [Spirochaeta thermophila DSM 6578] Length = 208 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 3/199 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V +L GE I +++ +FA + G + +R + R+G + +K R+EV+ +G Sbjct: 1 METQVYSLKGEPIKTIELNDRVFACEVSHGSIYHAIRNELANMRVGTASTKTRAEVSGSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG FGP P + LP+KV+ LA R LS K N Sbjct: 61 RKPWRQKGTGRARAGERRSPLWVGGGVVFGPKPREYGYKLPRKVKRLAYRSVLSLKLREN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 V+++ V + KTK +V +AL+ L++ G + + A RNIP + + Sbjct: 121 AFRVVEDFVVESGKTKDMVKALQALNPEGRRVLLVIGEESALT-KRAGRNIPWLLVHTYD 179 Query: 180 GINVYDILRCSKLVLSKSA 198 + V+D+ ++++ +SA Sbjct: 180 KLRVHDVFYADQVLVQESA 198 >gi|258648158|ref|ZP_05735627.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC 51259] gi|260852039|gb|EEX71908.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC 51259] Length = 209 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G +V +E +F ++P + ++ +R G +KSK RSE++ + Sbjct: 1 MEISVFNIKGEDTGRKAVLNEAVFGIEPNDHAIYLDVKQYLAAQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK+++LA R ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPRPRNYAFKLNKKLKALARRSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V L +S +++ + ++N L+ARN+ L + Sbjct: 121 NSIVVLEDFTMETPKTKAFVEILNNLKVSEKKVLVILPEANKNVFLSARNLEGAKLAIAK 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 IN Y++L LV+++ ++E ++ Sbjct: 181 DINTYNVLDAGALVITERSLEDID 204 >gi|283780375|ref|YP_003371130.1| 50S ribosomal protein L4/L1e [Pirellula staleyi DSM 6068] gi|283438828|gb|ADB17270.1| ribosomal protein L4/L1e [Pirellula staleyi DSM 6068] Length = 209 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 1/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V N G + G + A K Q +L V+ R G ++KGR EVA + Sbjct: 1 MATLPVFNRSGAEVGKYEIDPAEIAPKISQQLLHDVVVMYQANLRQGTHRTKGRGEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR S+ RGGG F P + LP+K A R A++ K Sbjct: 61 TKKMYRQKGTGNARAGSRRSGVRRGGGHIFALRPRDYSYRLPRKAVQAATRMAIAHKLNQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++VID L KTK + T + L L+ A ++ LD N +ARNI + + PV Sbjct: 121 NSVVVIDELSMAAPKTKEVATILKTLGLAGASTLVTTAGLDVNVYKSARNIDKVTVSPVA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N +L K++++K+A++A++ R K Sbjct: 181 DLNALSVLMPRKMLVTKAALDAIKTRAK 208 >gi|269955436|ref|YP_003325225.1| 50S ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM 15894] gi|269304117|gb|ACZ29667.1| ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM 15894] Length = 232 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 3/205 (1%) Query: 1 MIELSVRNLDGEDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M L+V LD + K G + ++F + ++ +V+ Q R G +K R EV Sbjct: 1 MTSLTVDVLDAQGKKAGQAELPAEVFDVVTNVPLIHQVVVAQRAAARQGTHATKTRGEVR 60 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GGGRKPYKQKGTGRARQGSTRAPQFAGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRA 120 Query: 119 CSNDIMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + + V+ + TK + L +++ + D L+ RN+P ++LL Sbjct: 121 RAGRVHVVTGFGIDGTPSTKTALQTLSVLSERRHVLVVTERSDEATILSLRNVPTVHLLV 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V ++ A+ A Sbjct: 181 ADQLNTYDVLVSDDVVFTQGALAAF 205 >gi|325267187|ref|ZP_08133854.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394] gi|324981350|gb|EGC16995.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394] Length = 206 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLINAQGQVSGSVAASDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L + KTK + + L L L + QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIESLSAATPKTKDFADQVKNLGLEQVLFVTK-QLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K+VL+K A+E LE+++ Sbjct: 180 ADPYSLLRYKKVVLTKEAVEQLEEQW 205 >gi|284040620|ref|YP_003390550.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74] gi|283819913|gb|ADB41751.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74] Length = 209 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N GED G +++ E++F+++P Q + ++ +R G K+K R+E A++ Sbjct: 1 MEVIVYNSKGEDTGKKVTLPEEVFSIEPNQHAIYLDVKQYLANQRQGTHKAKERAENAHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG FGP P L KKV++LA + A + K + Sbjct: 61 TRKLKKQKGTGGARAGSAKSPVFVGGGTIFGPRPRDYSFKLNKKVKALARQSAYAVKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLP 177 I VID++ + +TK + L+++ LI+ ++ N L++RN+ + Sbjct: 121 EKISVIDSIALEAPRTKDYIQFLNDLNVTGKKTLLIL--PDVNTNVVLSSRNVQKAKVTT 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD++ +L++S+ A+ ++ F Sbjct: 179 ASQVNTYDLMNADQLLISEEALSTIQTLF 207 >gi|326773964|ref|ZP_08233246.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505] gi|326636103|gb|EGE37007.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505] Length = 214 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 2/193 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + ++F ++ +V+ Q R G +K R +V G K Y QKGT Sbjct: 14 GKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGRKPYRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + + VI V Sbjct: 74 GRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGRVHVITEFV 133 Query: 131 SKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + TK + R L AL+I Q D + +L+ RN P ++L +N YD+L+ Sbjct: 134 TTTVPSTKNALVALRNLTDRKALVIVDRQDDLS-RLSLRNAPEAHVLWADQLNTYDVLKS 192 Query: 190 SKLVLSKSAIEAL 202 +V + S ++A Sbjct: 193 DDVVFTASGLDAF 205 >gi|83648851|ref|YP_437286.1| 50S ribosomal protein L4 [Hahella chejuensis KCTC 2396] gi|109893598|sp|Q2S913|RL4_HAHCH RecName: Full=50S ribosomal protein L4 gi|83636894|gb|ABC32861.1| Ribosomal protein L4 [Hahella chejuensis KCTC 2396] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 106/197 (53%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 ++G KG +SVS+ FA + ++ +V+ R G K RS+V+ G K + Q Sbjct: 4 TINGAGKGTVSVSDVAFARDFNEALVHQVVTAYLAGGRQGSKAQKTRSQVSGGGKKPWRQ 63 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +RGGGK F P+ + KK+ A++ LS+ ++V++ Sbjct: 64 KGSGRARAGTIRSPIWRGGGKTFAATPLDHSQKVNKKMYRAAMQSILSELVRQERLVVVE 123 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + + KTK + + L L N LI+ +D+N LA+RNIP++++ IN ++ Sbjct: 124 EMAVEAPKTKQFNAKLKDLGLENVLIVADA-VDQNLYLASRNIPHVDVCDAVAINPVSLI 182 Query: 188 RCSKLVLSKSAIEALED 204 K++++ SA++ +E+ Sbjct: 183 AHDKVLVTVSALKKIEE 199 >gi|282934052|ref|ZP_06339334.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] gi|281301884|gb|EFA94146.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] Length = 158 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 85/154 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII 154 N+++V+D L KTK L++ + +++ Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLV 154 >gi|328720672|ref|XP_001945994.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Acyrthosiphon pisum] Length = 282 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 6/207 (2%) Query: 6 VRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 V NLD +I + +F +P+ I+ + WQ K + + +K +EV + Sbjct: 54 VSNLDTIKENPSTIIDLHPQVFGSRPRIDIIHENVVWQKKYKYVSYANTKVTAEVNMSSK 113 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRARH ++ FRGG GP + LP R L LS K + Sbjct: 114 KPWPQKGQGRARHGTRRSPLFRGGSVIHGPRSHTTHFYMLPFYKRVYGLTSTLSVKLIQD 173 Query: 122 DIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 D+ V++NL Y+ + R S I D + +N LA I ++NL+PV Sbjct: 174 DLHVVNNLDIPTDDPGYINDLVDSRLWGPSVLFIDDTDTMPKNISLALNQIKHMNLMPVY 233 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ +A++ +++R Sbjct: 234 GLNVYSMLKYETLVLTVAAVKKIQERL 260 >gi|223997036|ref|XP_002288191.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335] gi|220975299|gb|EED93627.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335] Length = 199 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 6/198 (3%) Query: 15 GVISVSEDIFALKP-QQGILARVLRWQSWR---KRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G I +S F P + IL R + +Q + KR +++K EV+ +G K+ QKG Sbjct: 2 GSIHLSAHTFGCDPIRVDILHRCVVYQRNKRRGKRNAGARTKTIHEVSGSGRKVRNQKGG 61 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFCSNDIMVIDN 128 G AR + +RGG KA GP + + L KKVR + +RHALS K +++V+ + Sbjct: 62 GVARAGHSRPAHWRGGAKAHGPKGSVQDYTTKLNKKVRKMGVRHALSQKLLEGNLIVMGD 121 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L +K KTK L ++ L+ N ++A+ N+ + ++ G NVYD+L+ Sbjct: 122 LNAKSHKTKELEEALGRFGIAGKKGTVYGGLNVNLKVASGNLFKVKVMNQLGTNVYDLLK 181 Query: 189 CSKLVLSKSAIEALEDRF 206 KLVLS SA++ALE+R Sbjct: 182 HEKLVLSLSAVKALEERL 199 >gi|23336502|ref|ZP_00121716.1| COG0088: Ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|23466131|ref|NP_696734.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705] gi|189440570|ref|YP_001955651.1| 50S ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|213693087|ref|YP_002323673.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546477|ref|ZP_03976526.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621011|ref|ZP_04664042.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454869|ref|YP_003662013.1| 50S ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum JDM301] gi|312133875|ref|YP_004001214.1| rpld [Bifidobacterium longum subsp. longum BBMN68] gi|317483449|ref|ZP_07942439.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689928|ref|YP_004209662.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis 157F] gi|322691869|ref|YP_004221439.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM 1217] gi|46576825|sp|Q8G416|RL4_BIFLO RecName: Full=50S ribosomal protein L4 gi|226730621|sp|B3DQ14|RL4_BIFLD RecName: Full=50S ribosomal protein L4 gi|254803717|sp|B7GND9|RL4_BIFLI RecName: Full=50S ribosomal protein L4 gi|23326867|gb|AAN25370.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705] gi|189429005|gb|ACD99153.1| Ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|213524548|gb|ACJ53295.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227213026|gb|EEI80905.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516112|gb|EEQ55979.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516468|emb|CBK70084.1| LSU ribosomal protein L4P [Bifidobacterium longum subsp. longum F8] gi|296184301|gb|ADH01183.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum JDM301] gi|311773168|gb|ADQ02656.1| RplD [Bifidobacterium longum subsp. longum BBMN68] gi|316915135|gb|EFV36567.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456725|dbj|BAJ67347.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM 1217] gi|320459265|dbj|BAJ69886.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461264|dbj|BAJ71884.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis 157F] Length = 218 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + E +F + + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDAKGQATGTVEAPEALFGVSAEDVQAHIPLIHQVVTAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ALSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V++ ++ E TK V + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVAVVEFGIT-EPSTKAAVAALAPITADKFTTVVFTRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V +K A EA Sbjct: 183 FVDQLNTYDVITSQYVVFTKEAFEAF 208 >gi|317503979|ref|ZP_07961987.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606] gi|315665005|gb|EFV04664.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606] Length = 209 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 114/204 (55%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNIKGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++L + KTK V + + + ++ ++++N L+ARNI ++ Sbjct: 121 NAIIVVEDLKFEAPKTKEFVNFAKNIKVEGKKTLVLLSEVNKNVYLSARNIQGTEIMTAT 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L +V+++SA++A++ Sbjct: 181 SLNTYKVLNADIVVIAESALKAID 204 >gi|45644694|gb|AAS73082.1| predicted ribosomal protein L4 [uncultured marine gamma proteobacterium EBAC20E09] Length = 204 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 IS+S ++F+ + + ++ + + R G +K K RSEV G K Y QKGTGRAR Sbjct: 14 ISISNEVFSKEFNESLVHQAVVSFMAAARQGSAKQKNRSEVRGGGKKPYRQKGTGRARAG 73 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F P + KK+ A++ S+ N ++ I+ V ++ KT Sbjct: 74 TIRSPLWRGGGVTFAARPRDFSKKINKKMYRAAIKSIFSELVRQNRLVAIEKPVLEKPKT 133 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + + LS LII +LD N L+ARNIPN++++ V+ IN ++++ K+ ++ Sbjct: 134 KEIANFLKEFSLSKVLIIID-ELDMNLYLSARNIPNVDVITVKEINPVNLIKSHKVAVTS 192 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 193 EALKQIEE 200 >gi|282880999|ref|ZP_06289690.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS 5C-B1] gi|281305222|gb|EFA97291.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS 5C-B1] Length = 209 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 116/211 (54%), Gaps = 14/211 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYGFKLNKKVKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N I+V+++ KTK V +++ L +DG ++++N L+ARN+ Sbjct: 121 NSILVVEDFNLDAPKTKDFV------NIAKNLKVDGRKTLLVLPEVNKNVYLSARNLQQA 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ +N Y +L L++++++++A+++ Sbjct: 175 EVMTASTLNTYKVLNADVLIMTENSLKAIDE 205 >gi|121997648|ref|YP_001002435.1| 50S ribosomal protein L4 [Halorhodospira halophila SL1] gi|166234674|sp|A1WVC1|RL4_HALHL RecName: Full=50S ribosomal protein L4 gi|121589053|gb|ABM61633.1| LSU ribosomal protein L4P [Halorhodospira halophila SL1] Length = 205 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N GE G + VS+ F ++ ++ +V+ R G K RSEVA G Sbjct: 1 MELKLSNEKGEAAGQLEVSDQAFDAPFRESLVHQVVTAHLAGARAGTKAQKTRSEVAGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR + +RGGG+ F P + +K+ ALR LS+ + Sbjct: 61 KKPWRQKGTGNARAGTIRSPLWRGGGQTFAAKPRDFSQKVNRKMYRGALRSILSELARQD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ L KT+ L R L + LI+ ++D N +LAARN+P + ++ G+ Sbjct: 121 RLVVVKQLTVDAPKTRELKARLEGLGVREGLIVV-DEIDANLELAARNLPRLGVVDAAGV 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ ++V+++SAI +E+ Sbjct: 180 DPASLVGAERVVITESAIRRVEE 202 >gi|209364189|ref|YP_001425181.2| 50S ribosomal protein L4 [Coxiella burnetii Dugway 5J108-111] gi|207082122|gb|ABS76582.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii Dugway 5J108-111] Length = 206 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ + Sbjct: 1 MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D+L E KT+ L + L+L N L IIDG DRN LA+RN+ +++ Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD--DRNINLASRNMVGVSVCDAL 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 179 HVDPVSLVAAENIVVTVDAVKRLEERL 205 >gi|331699175|ref|YP_004335414.1| 50S ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190] gi|326953864|gb|AEA27561.1| ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190] Length = 308 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N GE G + + +F + ++ +V+ Q R G +K R EV Sbjct: 1 MSSVDVKNAAGEKDGSVELPGHVFDVTANIPLMHQVVVAQQAAARQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSVRAPQFTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARG 120 Query: 121 NDIMVIDNLVSKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQ-LAARNIPNINLLPV 178 + V+ +V+ + TK A+ + A ++ D + L+ RN+P ++L+ Sbjct: 121 GRVHVVSTIVTGDTPSTKAARQALEAVVGAEARVLAVVDRDDSVNLLSLRNLPQVHLIAP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L ++ + +A+EA Sbjct: 181 DQLNTYDVLVNDDVLFTSAALEAF 204 >gi|146298160|ref|YP_001192751.1| 50S ribosomal protein L4 [Flavobacterium johnsoniae UW101] gi|189029503|sp|A5FMY0|RL4_FLAJO RecName: Full=50S ribosomal protein L4 gi|146152578|gb|ABQ03432.1| 50S ribosomal protein L4/L1e [Flavobacterium johnsoniae UW101] Length = 209 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V + +G+D G + +S+ +FA++P + ++ +R G K+K R+EV + Sbjct: 1 MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP P L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSVKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSAFSIKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++I+V+++ + TK + +AL L N +L + G + ++N L++RN+ N++ Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLG-ESNKNVYLSSRNLKASNVVTS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 ++ Y IL + LVL + ++E +E+ Sbjct: 180 SELSTYAILNTNNLVLLEGSLELIEE 205 >gi|294786412|ref|ZP_06751666.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens F0305] gi|315225974|ref|ZP_07867762.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105] gi|294485245|gb|EFG32879.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens F0305] gi|315120106|gb|EFT83238.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105] Length = 219 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 I L V + +G+ G + ++F + + ++ +V+ Q R G K R+ Sbjct: 4 ISLKVTSANGKASGQVEAPSEVFGIAQEDVVKHVPLVHQVVIAQLAAARQGTHAVKNRAR 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 ++ G K + QKGTGRAR S QF GG GPVP P+K++ AL + LSD Sbjct: 64 ISGGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPRKMKLAALNYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +F + + V+D +S + TK V + + S I + + N L+ RN+P +++L Sbjct: 124 RFNAGRVHVVDFAISDKPSTKAAVAALQPVVESRFATIVVSRDNINEWLSVRNLPTVHVL 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K +EA Sbjct: 184 FADQLNTYDVVTAEDVVFTKEGLEAF 209 >gi|19551747|ref|NP_599749.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|62389402|ref|YP_224804.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|145294658|ref|YP_001137479.1| 50S ribosomal protein L4 [Corynebacterium glutamicum R] gi|46577275|sp|Q8NT08|RL4_CORGL RecName: Full=50S ribosomal protein L4 gi|166234660|sp|A4QBI0|RL4_CORGB RecName: Full=50S ribosomal protein L4 gi|21323272|dbj|BAB97900.1| Ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|41324736|emb|CAF19218.1| 50S RIBOSOMAL PROTEIN L4 [Corynebacterium glutamicum ATCC 13032] gi|140844578|dbj|BAF53577.1| hypothetical protein [Corynebacterium glutamicum R] Length = 218 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ DG G + + +IF + +L +V+ Q R G +K R EV G Sbjct: 4 LKLDVQTADGNINGSVELPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARNA 123 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ LV + TK L ++++ + D N Q +A N+P +++L Sbjct: 124 RIHVVSELVPGQTPSTKSAKAFIERLTERKSVLLVVSREDINAQKSANNLPGVHILAADQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L+ +V S A+ +R Sbjct: 184 LNTYDVLKSDDVVFSVEALHTFINR 208 >gi|261749469|ref|YP_003257155.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497562|gb|ACX84012.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 210 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 +EL + ++ G + +E F+ K I V R+ S +R G KSK R E++ Sbjct: 1 MELEILDIKGNSTNRKVLFNEKFFSKKSYDHPIYLEVKRYLSA-QRQGTHKSKERGEISG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K++ QKGTG +R FRGGG+ FGP P + K ++LA ++ + K Sbjct: 60 SRRKLHRQKGTGGSRKGDIKNPLFRGGGRVFGPTPRRYFMKINKLTKNLAKKNIIEHKLK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLL 176 + + +I++ K+ KTK ++ ++L L N +I++ DRN L+ARN+ N LL Sbjct: 120 TKKVKIIEDFQLKKPKTKLVLNILKSLQLMNEKSLMIVEKA--DRNLHLSARNLKNFQLL 177 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALE 203 + +N Y +L S ++LS+++++ +E Sbjct: 178 NAEELNSYSLLNSSYVILSENSVKRIE 204 >gi|294789224|ref|ZP_06754463.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC 29453] gi|294482965|gb|EFG30653.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC 29453] Length = 206 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLINAQGQVSGSVAGSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+NL + KTK + + L L L I QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIENLSAATPKTKEFADQVKNLGLEQVLFITK-QLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K+VL+K A+ LE+++ Sbjct: 180 ADPYSLLRYKKVVLTKEAVAQLEEQW 205 >gi|148273800|ref|YP_001223361.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831730|emb|CAN02699.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 218 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V + G G + + +F ++ ++ +V+ Q R G K+KGR EV+ G Sbjct: 6 QLDVLDATGAVTGSVDLPASLFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ Sbjct: 66 KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125 Query: 123 IMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++L + + T+ +V + S ++I + D + RNIP +++L + Sbjct: 126 LHVIESLSAGDVPSTRTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +K A +A Sbjct: 186 NAYDVLVSDDIVFTKGAFDAF 206 >gi|28897032|ref|NP_796637.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633] gi|91229294|ref|ZP_01262911.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01] gi|153840338|ref|ZP_01993005.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810] gi|260877950|ref|ZP_05890305.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034] gi|260897590|ref|ZP_05906086.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466] gi|260899520|ref|ZP_05907915.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037] gi|262392515|ref|YP_003284369.1| 50S ribosomal protein L4p [Vibrio sp. Ex25] gi|269964733|ref|ZP_06178971.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B] gi|46577240|sp|Q87T12|RL4_VIBPA RecName: Full=50S ribosomal protein L4 gi|28805240|dbj|BAC58521.1| ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633] gi|91187419|gb|EAS73767.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01] gi|149745996|gb|EDM57126.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810] gi|262336109|gb|ACY49904.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. Ex25] gi|269830632|gb|EEZ84853.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B] gi|308087513|gb|EFO37208.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466] gi|308090091|gb|EFO39786.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034] gi|308108798|gb|EFO46338.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037] gi|328471835|gb|EGF42712.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus 10329] Length = 200 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEE 197 >gi|21674997|ref|NP_663062.1| 50S ribosomal protein L4 [Chlorobium tepidum TLS] gi|46577274|sp|Q8KAH3|RL4_CHLTE RecName: Full=50S ribosomal protein L4 gi|21648230|gb|AAM73404.1| ribosomal protein L4 [Chlorobium tepidum TLS] Length = 208 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G + G V++++++IFA++ + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNIQGAETGEVVTLNDEIFAVEVSEHAMYLDVKAILANRRQGTHKAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + +KV+ LA R ALS K + Sbjct: 61 GKKPFRQKGTGNARQGSTRSGLMVGGGAIFGPQPRTYDQKVNRKVKQLARRSALSAKAAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+D+ + KT+ + + L L+ ++ D + RNI +N++ Sbjct: 121 GQIVVVDDFSFEAIKTRPVADMLKNLGLAEKKTLLMMPHHDNVVSTSGRNIEKLNVMVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + YDIL ++ K A++ +E+ Sbjct: 181 QASTYDILNSQVVLFQKGALQKIEE 205 >gi|59710844|ref|YP_203620.1| 50S ribosomal protein L4 [Vibrio fischeri ES114] gi|197334113|ref|YP_002154997.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11] gi|75431860|sp|Q5E8B4|RL4_VIBF1 RecName: Full=50S ribosomal protein L4 gi|226731442|sp|B5FG10|RL4_VIBFM RecName: Full=50S ribosomal protein L4 gi|59478945|gb|AAW84732.1| 50S ribosomal subunit protein L4 [Vibrio fischeri ES114] gi|197315603|gb|ACH65050.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11] Length = 200 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ + Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ +A++ +E+ Sbjct: 175 DPVSLVAFDKVLMTAAAVKQVEE 197 >gi|328949276|ref|YP_004366613.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489] gi|328449600|gb|AEB15316.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489] Length = 212 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 105/205 (51%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + IF L + ++ + + KR+G + +K R+EV + Sbjct: 1 MEKKVYSIDGKELRTINLDDKIFGLPVNEDVIYYAITNELANKRVGTACTKTRAEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTG AR K GGG FGP P +A+PKK + LA++ LS + ++ Sbjct: 61 AKPYKQKGTGNARRGDKKSPITVGGGTIFGPKPRDYSYAIPKKEKRLAMKSILSLQAQAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+++ + KTK LV + +I D + A RN+PN+ L + Sbjct: 121 RLTVVEDFTIESGKTKDLVKILKNFVKDERTVILLKDDDAKIKQAGRNLPNVYFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ + A + L D + Sbjct: 181 RAHDLFYGRKIIMLEGAAKNLSDFY 205 >gi|291457203|ref|ZP_06596593.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM 20213] gi|291381038|gb|EFE88556.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM 20213] Length = 218 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + ++F + K ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDAKGQAAGTVEAPVELFGVSAEDVKAHIPLIHQVVTAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ALSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + I V+D ++ E TK V + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRIAVVDFGIT-EPSTKAAVAALSPITEDKFTTVVFTRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V +K A EA Sbjct: 183 FVDQLNTYDVITAQYVVFTKEAFEAF 208 >gi|163840905|ref|YP_001625310.1| LSU ribosomal protein L4/L1 family protein [Renibacterium salmoninarum ATCC 33209] gi|162954381|gb|ABY23896.1| LSU ribosomal protein L4/L1 family [Renibacterium salmoninarum ATCC 33209] Length = 226 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 8 VELPAEIFDVQTNVPLLHQVVVAQLAAARQGTQKTKTRAEVSGAGRKPFKQKGTGRARQG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKEC 134 S GGG GP P PKK+++ ALR ALSD+ + I V+ LV +K Sbjct: 68 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNERIHVVAELVAGTKPS 127 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA---RNIPNINLLPVQGINVYDILRCSK 191 + L T + N L++ ++R +AA RN+ +I++L V +N YD+L Sbjct: 128 AKEALATLRGVSERKNLLVV----IERANDVAALSVRNLADIHVLYVDQLNTYDVLISDD 183 Query: 192 LVLSKSAIEAL 202 +V +K+A EA Sbjct: 184 VVFTKTAYEAF 194 >gi|330837654|ref|YP_004412295.1| 50S ribosomal protein L4P [Spirochaeta coccoides DSM 17374] gi|329749557|gb|AEC02913.1| LSU ribosomal protein L4P [Spirochaeta coccoides DSM 17374] Length = 209 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 9/210 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + +G++ I +++ +FA + G + + + +R+G + +K R+EV Y+ Sbjct: 1 METKVYSTEGKEIRTIQLNDAVFAREVSDGSIYYAVNNELANRRVGTACTKTRAEVNYSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTG AR K + GGG FGP P + +PKKV+ LA++ LS Sbjct: 61 AKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYVIPKKVKRLAMKSLLSLSVQEE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALII---DGCQLDRNFQLAARNIPNINLL 176 ++V+++ ++ KTK L+ + L+ LII D L R AA+NIPN+ +L Sbjct: 121 RLVVVEDFTAESGKTKELMAILKNFMEGLNRTLIILKDDDVLLRR----AAKNIPNVRVL 176 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++L K+++ ++A + L D + Sbjct: 177 SYNRLAAKELLYGRKVIVMETAAKNLNDFY 206 >gi|256380597|ref|YP_003104257.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827] gi|255924900|gb|ACU40411.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827] Length = 231 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + VR DG+ G + + +F + +L +V+ Q R G K K R+EV+ G K Sbjct: 5 VEVRTPDGKTDGSVELPGAVFDAQANISLLHQVVVAQQAAARQGTHKVKTRAEVSGGGKK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ +N + Sbjct: 65 PYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARANQV 124 Query: 124 MVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ V + TK ++ + +++ + + ++ RN+ +++++ +N Sbjct: 125 HVVTGFVEGDKPSTKTARKVLESVSTARRILVVLLRDEDVSWVSLRNLTHVHVIAPDQLN 184 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V SKSA++ Sbjct: 185 TYDVLVNDDVVFSKSALDVF 204 >gi|124514442|gb|EAY55955.1| ribosomal protein L4 [Leptospirillum rubarum] Length = 218 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 89/175 (50%), Gaps = 5/175 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L +++ Q R G + +K R EV+ G K Y QKGTGRAR S Q+RGG FG Sbjct: 32 LLHEIIKMQRAGIRSGTASTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQWRGGAIIFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--- 148 P P + P K LA+++A+ + + V+D+L KTK L+ F L Sbjct: 92 PRPRDYFYRQPAKKVVLAVKNAIFSHLENKSLYVVDSLDVPSRKTKDLIALFNKWSLFPG 151 Query: 149 -SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LIID L N + RNIP + +L +N YD+L K+++SK A E + Sbjct: 152 EERILIIDNG-LSENIYYSCRNIPGLEILLPHQVNPYDLLIADKVLVSKEAFENM 205 >gi|227487122|ref|ZP_03917438.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51867] gi|227092780|gb|EEI28092.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51867] Length = 226 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 6/202 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V DG+ G + + ++F K +L +V+ Q R G +K R EV+ G K Sbjct: 6 LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S F GGG A GP P PKK+++ AL ALS++ + I Sbjct: 66 PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125 Query: 124 MVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +V+ ++ TK T ++ D N L++ G + D+ +L+ RN+P + + I Sbjct: 126 HAITEVVAGQKPSTKAARTFLESITDRKNVLVVVGRE-DQTSRLSVRNLPGVRFCGPEQI 184 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 +D+L+ ++ S +E+L Sbjct: 185 TTFDVLKADDVIFS---VESLH 203 >gi|15828001|ref|NP_302264.1| 50S ribosomal protein L4 [Mycobacterium leprae TN] gi|221230478|ref|YP_002503894.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923] gi|3122749|sp|O32982|RL4_MYCLE RecName: Full=50S ribosomal protein L4 gi|254803747|sp|B8ZSB8|RL4_MYCLB RecName: Full=50S ribosomal protein L4 gi|2344834|emb|CAB11436.1| ribosomal protein L4 [Mycobacterium leprae] gi|13093554|emb|CAC30816.1| 50S ribosomal protein L4 [Mycobacterium leprae] gi|219933585|emb|CAR71958.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923] Length = 230 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 6/202 (2%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ DG+ G I + ++F ++ +V+ Q R G +K R +V+ G Sbjct: 13 KIDVKTPDGKVDGTIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP PKK+ + ALR ALSD+ + Sbjct: 73 KPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKKMIAAALRGALSDRARNGR 132 Query: 123 IMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I + LV + + F D L++ G + D + RN+P ++LL Sbjct: 133 IHAVTELVVGKTPSTKSAKEFLGTLTDRKQVLVVIG-RSDETGAKSVRNLPGVHLLSPDQ 191 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+LR LV S +EAL Sbjct: 192 LNTYDVLRADDLVFS---VEAL 210 >gi|321468499|gb|EFX79483.1| hypothetical protein DAPPUDRAFT_52198 [Daphnia pulex] Length = 258 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ V N+D E G+I + ++FA +P+ I+ +RWQ + + + +K EV Sbjct: 28 QVWVSNMDTVEEEKLGLIDLHPEVFAERPRLDIIHENVRWQQLYRHVSYAHTKMSYEVRG 87 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKF 118 G K QKG+GR+RH S + GGG GP P + L R LR LS K Sbjct: 88 GGRKPRPQKGSGRSRHGSIRSPIWVGGGVVHGPRSPKPYFYMLGFNARLNGLRSTLSAKL 147 Query: 119 CSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ ++++L KYL + R S + D + N A+ + NL+ Sbjct: 148 AQDDLHIVESLDIPTDDPKYLEALVEERGWGPSVLFVDDHDIMPLNITAASDAYGHYNLM 207 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDR 205 PV G+NV+ +L+ + LV++ SA+E LE+R Sbjct: 208 PVYGLNVFSMLKHTTLVMTLSAVERLEER 236 >gi|117927516|ref|YP_872067.1| 50S ribosomal protein L4P [Acidothermus cellulolyticus 11B] gi|117647979|gb|ABK52081.1| LSU ribosomal protein L4P [Acidothermus cellulolyticus 11B] Length = 220 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 ++ + G D+ + + D+F ++ ++ +V+ Q R G K++ R EV+ G K Sbjct: 1 MTTVTVAGTDR-TVELPADVFDVQVNVPLIHQVVVAQLAAARQGTHKTRTRGEVSGGGKK 59 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP+P PKK+++ ALR AL+D+ + I Sbjct: 60 PYRQKGTGRARQGSIRAPQFTGGGVVHGPMPRHYDQRTPKKMKAAALRGALTDRARAGRI 119 Query: 124 MVIDNLVSKEC-KTKYLVTRFR-ALDLSNALIIDGCQLDRNFQL---AARNIPNINLLPV 178 V+ +V E TK + R AL ++ LDR + + RNIP+++LL Sbjct: 120 HVLPRIVDGEAPSTKQALEALRTALGTERRRVL--VVLDRGDETGWKSLRNIPDVHLLVA 177 Query: 179 QGINVYDILRCSKLVLSKSAI 199 +N YD+L +V ++ A+ Sbjct: 178 DQLNAYDVLSSDDVVFTEQAL 198 >gi|90581759|ref|ZP_01237543.1| 50S ribosomal protein L4 [Vibrio angustum S14] gi|330447036|ref|ZP_08310686.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|90437057|gb|EAS62264.1| 50S ribosomal protein L4 [Vibrio angustum S14] gi|328491227|dbj|GAA05183.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 200 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ G +L+ N LAARN+ +++ + I Sbjct: 116 RLIVVDNFALEAPKTKALVAKLKELELTDALIVTG-ELEENLFLAARNLYKVDVRDAKAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ +A++A+E+ Sbjct: 175 DPVSLIAFDKVVMTAAAVKAVEE 197 >gi|317125871|ref|YP_004099983.1| 50S ribosomal protein L4P [Intrasporangium calvum DSM 43043] gi|315589959|gb|ADU49256.1| LSU ribosomal protein L4P [Intrasporangium calvum DSM 43043] Length = 212 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 9/190 (4%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++ DIF ++ ++ +V+ Q R G +K R EV G K Y QKGTGRAR S Sbjct: 10 NLPADIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPYRQKGTGRARQGS 69 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE--CK 135 QF GGG GP P PKK++ ALR ALSD+ + I V+D++V + Sbjct: 70 TRAPQFAGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARFDRIHVVDSIVGGDAPSA 129 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLA---ARNIPNINLLPVQGINVYDILRCSKL 192 L D N L++ ++R ++A RN+PN+++L +N YD+L + Sbjct: 130 KAALALLAGLTDRPNLLVV----IERGDEVAFKSVRNLPNVHVLVADQLNTYDVLCADDI 185 Query: 193 VLSKSAIEAL 202 V +++A++A Sbjct: 186 VFTQAALDAF 195 >gi|158317790|ref|YP_001510298.1| 50S ribosomal protein L4 [Frankia sp. EAN1pec] gi|158113195|gb|ABW15392.1| ribosomal protein L4/L1e [Frankia sp. EAN1pec] Length = 247 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 1/192 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G D G + + +F + ++ +V+ Q R G +K R EV G K Y QKGT Sbjct: 30 GGDAGSVELPGAVFDVPVNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPYRQKGT 89 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ +N + V+ +LV Sbjct: 90 GRARQGSLRAPQFTGGGIVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNRLHVVSSLV 149 Query: 131 SKECK-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + + TK V +L + +++ + D L+ RN+ ++LL +N YD+L Sbjct: 150 AGDTPSTKSAVAALTSLVDARRVLVVALRSDELTWLSLRNVAEVHLLDPGQLNTYDVLVS 209 Query: 190 SKLVLSKSAIEA 201 +V ++ A+ A Sbjct: 210 DDVVFTEGALAA 221 >gi|256762004|ref|ZP_05502584.1| predicted protein [Enterococcus faecalis T3] gi|256683255|gb|EEU22950.1| predicted protein [Enterococcus faecalis T3] Length = 140 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 76/137 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120 Query: 121 NDIMVIDNLVSKECKTK 137 N+++ ++ L KTK Sbjct: 121 NNLVAVEGLSFDAPKTK 137 >gi|194335446|ref|YP_002017240.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1] gi|194307923|gb|ACF42623.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1] Length = 212 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 8/208 (3%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V+++ +DIF + + + ++ +R G KSK R EV Sbjct: 5 MELKVLNTGGTETGEVVTLRDDIFGAEISEHAMYLDVKSILANRRQGTHKSKTRGEVRGG 64 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K QKGTG AR S GGG FGPVP + KKV+ LA R ALS K + Sbjct: 65 GRKPLRQKGTGNARQGSSRSPLNIGGGTIFGPVPHAYDQKVNKKVKLLARRSALSSKAKA 124 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL----AARNIPNINLL 176 I+VI++ V + KTK + L L+ + L + L + +NI +N++ Sbjct: 125 GQIVVIEDFVFENIKTKPFAQILKNLGLAEKKTL---MLTPGYDLIIARSGKNIAALNIM 181 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 + YDIL L++ K+A++ +ED Sbjct: 182 TADKASTYDILHSHTLLVQKTALKKIED 209 >gi|254796648|ref|YP_003081484.1| ribosomal protein L4/L1 family [Neorickettsia risticii str. Illinois] gi|254589885|gb|ACT69247.1| ribosomal protein L4/L1 family [Neorickettsia risticii str. Illinois] Length = 214 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++V + + +L+ V+ WQ ++R G K+KG SEV+ T K Y QKGTGRAR Sbjct: 18 GSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYRQKGTGRAR 77 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S QFR GG FGPV ++ KKVRS AL ALS +F + V+++ E Sbjct: 78 QGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSFALCSALSMRFAEGRLFVLESCRLGES 137 Query: 135 KTKYLVTRFRA---LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 K L+ F + L + +I + + + AA N+ + +L NVYD++ Sbjct: 138 KAATLLKWFASNTELSVGKKFLIVMEEKNEDLLRAASNLHWVKVLWGSSANVYDVVLHDF 197 Query: 192 LVLSKSAIEALEDRF 206 ++L K++++ L R Sbjct: 198 VLLEKASVDVLVKRL 212 >gi|227541711|ref|ZP_03971760.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51866] gi|227182526|gb|EEI63498.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51866] Length = 226 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 6/202 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V DG+ G + + ++F K +L +V+ Q R G +K R EV+ G K Sbjct: 6 LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S F GGG A GP P PKK+++ AL ALS++ + I Sbjct: 66 PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125 Query: 124 MVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +V+ + TK T ++ D N L++ G + D+ +L+ RN+P + + I Sbjct: 126 HAITEVVAGQNPSTKAARTFLESITDRKNVLVVVGRE-DQTSRLSVRNLPGVRFCGPEQI 184 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 +D+L+ ++ S +E+L Sbjct: 185 TTFDVLKADDVIFS---VESLH 203 >gi|299470351|emb|CBN78400.1| 50S ribosomal protein L4P [Ectocarpus siliculosus] Length = 307 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG +S++ +F + ++ ++ V+RWQ R+R G ++K E++ +G K+ QKG Sbjct: 107 DGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKG 166 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 G AR +RGG KA GP L KK L LR ALS + + V+D+L Sbjct: 167 GGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDL 226 Query: 130 VSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 S KT ++ +A + + + G F + NI +LP +G NV+DI++ Sbjct: 227 KSDGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARGANVHDIIK 286 Query: 189 CSKLVLSKSAIEALED 204 LVL++ A+ LE+ Sbjct: 287 RPNLVLTQDAVTHLEE 302 >gi|260439542|ref|ZP_05793358.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] gi|291042778|ref|ZP_06568519.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] gi|291013212|gb|EFE05178.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] Length = 206 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGT RAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTDRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L ++ KTK + + L L L + +LD N LA+RN+PN+ +L Q Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFVTK-RLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|282899953|ref|ZP_06307914.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505] gi|281195223|gb|EFA70159.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 9/213 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E +V+N GE+ G S + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESTVKNWQGEEVGQTSFELRVAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVSR--R 118 Query: 121 NDIMVIDNLVS--KECKTKYLV---TRFRALDLSNALII--DGCQLDRNFQLAARNIPNI 173 D++V++ + K+K LV R+ A L+I + Q L+ARN+ NI Sbjct: 119 EDLIVVEEFTDQLQRPKSKELVAALARWGATADQKTLLILSEIGQNTETISLSARNVENI 178 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NV+D+L K+V++ SA+ +++ + Sbjct: 179 KVIAADQLNVFDLLHADKIVVTSSALTKIQEVY 211 >gi|163804108|ref|ZP_02197892.1| 50S ribosomal protein L4 [Vibrio sp. AND4] gi|269959692|ref|ZP_06174072.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3] gi|323495505|ref|ZP_08100579.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326] gi|159172078|gb|EDP57033.1| 50S ribosomal protein L4 [Vibrio sp. AND4] gi|269835615|gb|EEZ89694.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3] gi|323319386|gb|EGA72323.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326] Length = 200 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEE 197 >gi|154507863|ref|ZP_02043505.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC 17982] gi|153797497|gb|EDN79917.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 14/212 (6%) Query: 1 MIELSVRNLD-----GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 MI RN+D G+ G + + IF + ++ +V+ Q R G +K R Sbjct: 1 MIMADDRNVDVIDLKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRG 60 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 EVA G K + QKGTG AR S F GGG GP P PKK++ ALR ALS Sbjct: 61 EVAGGGKKPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALS 120 Query: 116 DKFCSNDIMVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAA---RNI 170 D+ ++ I V+ L + TK + RA+ + AL++ L+R +L A RN+ Sbjct: 121 DRARADRIHVVTALFEGDKPSTKAALAALRAIVEDRQALVV----LERGNELTALSLRNV 176 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 P +++L +N YD+L +V +++A+E+ Sbjct: 177 PEVHVLWADQLNTYDVLDADDIVFTQAALESF 208 >gi|56461023|ref|YP_156304.1| 50S ribosomal protein L4 [Idiomarina loihiensis L2TR] gi|81600116|sp|Q5QXZ1|RL4_IDILO RecName: Full=50S ribosomal protein L4 gi|56180033|gb|AAV82755.1| Ribosomal protein L4 [Idiomarina loihiensis L2TR] Length = 201 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ KG + VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELTLKDA----KGALEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGATFAAKPQNHSQKVNKKMYRGAIKSILSELIRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ E KTK L + + +DL++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLIVVEKFGVDEPKTKQLAAKLKEMDLNDVLIVT-KEVDENLFLASRNLHKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEE 198 >gi|116624201|ref|YP_826357.1| 50S ribosomal protein L4 [Candidatus Solibacter usitatus Ellin6076] gi|122253083|sp|Q01W93|RL4_SOLUE RecName: Full=50S ribosomal protein L4 gi|116227363|gb|ABJ86072.1| LSU ribosomal protein L4P [Candidatus Solibacter usitatus Ellin6076] Length = 208 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 101/198 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L+ + + +++D+F + Q +L +R R G +K R EV+ + Sbjct: 1 MPTVDVVDLNNQVVSSVELADDVFGAEVNQSLLYEAVRQYQASLRAGTHATKVRREVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +R G GP P + LPKK+ ALR ALS K Sbjct: 61 GKKLWKQKGTGRARIGSVRSPLWRHGATVHGPQPRDYAYKLPKKMLLGALRSALSAKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+ N + KTK + L+ +++ + +RN +L RN+ + LL + Sbjct: 121 GELKVVQNFNFSDHKTKNAMGALSKLEAGRTVLVVDNEDNRNLELGIRNLKGVTLLATRE 180 Query: 181 INVYDILRCSKLVLSKSA 198 +N Y +L +++S++A Sbjct: 181 VNPYHLLGHKSVLISEAA 198 >gi|323492120|ref|ZP_08097282.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546] gi|323313681|gb|EGA66783.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546] Length = 200 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEE 197 >gi|300742056|ref|ZP_07072077.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567] gi|311111972|ref|YP_003983194.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC 17931] gi|300381241|gb|EFJ77803.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567] gi|310943466|gb|ADP39760.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC 17931] Length = 205 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF + +L +V+ Q R G K+K R EV+ G K + QKGTG AR Sbjct: 8 VDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-K 135 S GGG GP P PKK+ + ALR ALSD+ + I V++N +S E Sbjct: 68 SIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRIHVVENFISGETPS 127 Query: 136 TKYLVTRFRAL-DLSNALIIDGCQLDRN---FQLAARNIPNINLLPVQGINVYDILRCSK 191 TK F L D N L + +DR L+ARN+ +++L +N YD+L Sbjct: 128 TKAAKAAFAELTDRKNVLFV----IDRAEDVLALSARNLQKVHVLYADQLNTYDVLVSDD 183 Query: 192 LVLSKSAIEAL 202 +V +K+A +A Sbjct: 184 VVFTKAAYDAF 194 >gi|255324737|ref|ZP_05365851.1| ribosomal protein L4/L1 family protein [Corynebacterium tuberculostearicum SK141] gi|311740076|ref|ZP_07713910.1| ribosomal protein L4/L1 family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255298212|gb|EET77515.1| ribosomal protein L4/L1 family protein [Corynebacterium tuberculostearicum SK141] gi|311305149|gb|EFQ81218.1| ribosomal protein L4/L1 family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 217 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 4 LKLDVHTSEGKTNGSVDLPAEIFDTEASIALMHQVVNAQLAAARQGTHATKTRGDVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRDYAQRTPKKMIKAALFGALSDRARNE 123 Query: 122 DIMVIDNLV-SKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 124 RIHVIEELVPGQKPSTKSAKAFLESLTERKNVLLVIGRE-DINARRSANNLPNVQILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 183 QLNTYDVLYSDDVVFSVEALHTFINR 208 >gi|212213249|ref|YP_002304185.1| 50S ribosomal protein L4 [Coxiella burnetii CbuG_Q212] gi|212218075|ref|YP_002304862.1| 50S ribosomal protein L4 [Coxiella burnetii CbuK_Q154] gi|215918922|ref|NP_819283.2| 50S ribosomal protein L4 [Coxiella burnetii RSA 493] gi|206583807|gb|AAO89797.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii RSA 493] gi|212011659|gb|ACJ19040.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuG_Q212] gi|212012337|gb|ACJ19717.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuK_Q154] Length = 206 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ Sbjct: 1 MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D+L E KT+ L + L+L N L IIDG DRN LA+RN+ +++ Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD--DRNINLASRNMVGVSVCDAL 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 179 HVDPVSLVAAENIVVTVDAVKRLEERL 205 >gi|292492422|ref|YP_003527861.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4] gi|291581017|gb|ADE15474.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4] Length = 206 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 2/204 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V++L + + G+I VS+ +FA + ++ +V+ + R G K RSEV Sbjct: 1 MELAVQSLAENAETGMIQVSDVVFAQYFNEPLIHQVVTAYLAKDRAGTRAQKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGGK F P + KK+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPRDYSQKVNKKMYRAAMRSILSELARQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V++ +V E KTK LV A D + L++ + + N +L+ARNIP + + Sbjct: 121 DRLRVVNEIVFPEPKTKELVKLLSAYDWRSVLVV-VAEDNPNLELSARNIPAVAVGNASN 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+ D++R ++ + +AI E+ Sbjct: 180 ISPVDLIRFDGVLATDAAIRRFEE 203 >gi|306835220|ref|ZP_07468254.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens ATCC 49726] gi|304568900|gb|EFM44431.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens ATCC 49726] Length = 217 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 4 LKLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNE 123 Query: 122 DIMVIDNLV-SKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 124 RIHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGRE-DINARRSANNLPNVQILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ Sbjct: 183 QLNTYDVLYSDDVVFSVEALHTF 205 >gi|227502655|ref|ZP_03932704.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725] gi|227076385|gb|EEI14348.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725] Length = 217 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 4 LKLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 64 RKPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNE 123 Query: 122 DIMVIDNLV-SKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 124 RIHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGRE-DINARRSANNLPNVQILDAG 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ Sbjct: 183 QLNTYDVLYSDDVVFSVEALHTF 205 >gi|304570676|ref|YP_001805429.2| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142] Length = 210 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + +K R+EV Sbjct: 1 MVDCNVKNWQGEEVGQTTLELKVAKDETASHLLHRAVVRHLANARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+ + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAIGSRV-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D++V++N + + KTK L +TR+ ++ + + + + D N L+ARN+ ++ + Sbjct: 119 EDMIVVENFAEQLPQPKTKELASALTRW-GVEPTQKVALVLVETDANIYLSARNLCHVKI 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L +NVYD+L K+V++ AI +++ + Sbjct: 178 LRADSLNVYDLLDADKIVITSEAISKIQEVY 208 >gi|325287049|ref|YP_004262839.1| 50S ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489] gi|324322503|gb|ADY29968.1| ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489] Length = 209 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V + G+D G + +S+ +FA++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDSKGKDTGRKVDLSDSVFAIEPNKHAVYLDVKQYLAHQRQGNHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNVKRLARKSAFSIKQNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I+V+++ KTK ++L + N +LI+ G + N L++RN+ ++ Sbjct: 121 NAILVVEDFNFDAPKTKEFTQVLKSLGIENKKSLIVLGDS-NNNVYLSSRNLKRSEVVIN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 ++ Y IL S +VL +SA+E + Sbjct: 180 SELSTYKILNASSVVLCESALEGI 203 >gi|297621719|ref|YP_003709856.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044] gi|297377020|gb|ADI38850.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044] Length = 227 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 20/222 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M EL NL+G++ G + + I ++ + R + +KGRSEV +T Sbjct: 1 MTELKKYNLEGKETGSVEANAKITESSIHSQLIKEYIVAIRKNARQWSANTKGRSEVKHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTGRAR S QFRGGG FGP P H + KK + A+R L + Sbjct: 61 TKKPHRQKGTGRARQGSLVAPQFRGGGVVFGPKPKFDQHVRINKKEKRSAIRFLLGEMMR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DG-----------------CQLD 160 N ++V++N + + KTK L + +L ++ +G C Sbjct: 121 ENRMIVLENAMMDKPKTKTLAAFIKKANLGKRVLFLAEGKHEEIQTAHKTVAVSVKCNDH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 NF+ + NIP + +N YD++ +V++++A+E + Sbjct: 181 ENFRKSLNNIPKTQFALAKNVNGYDLMLADNIVVTEAALEEI 222 >gi|261250416|ref|ZP_05942991.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891] gi|260938985|gb|EEX94972.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891] Length = 200 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITADAVKQVEE 197 >gi|282898356|ref|ZP_06306347.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9] gi|281196887|gb|EFA71792.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9] Length = 213 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 9/213 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE+ G S I + I+ R L Q R G + +K R+EV Sbjct: 1 MVESIVKNWQGEEVGQTSFELRIAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVSR--R 118 Query: 121 NDIMVIDNLVS--KECKTKYLV---TRFRALDLSNALII--DGCQLDRNFQLAARNIPNI 173 D++V++ + K+K LV R+ A L+I + Q L+ARN+ NI Sbjct: 119 EDLIVVEEFTDQLQRPKSKELVAALARWGATAEQKTLLILSEIGQSTETISLSARNVENI 178 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NV+D+L K+V++ SA+ +++ + Sbjct: 179 KVIAADQLNVFDLLHADKIVVTSSALNKIQEVY 211 >gi|224283710|ref|ZP_03647032.1| 50S ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] gi|313140866|ref|ZP_07803059.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] gi|313133376|gb|EFR50993.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] Length = 221 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 5/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + V ++F ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDGKGQATGSVEVPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + ++V+D V+ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RVNAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 +N YD++ +V +K +EA D Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAFVD 211 >gi|326332192|ref|ZP_08198472.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1] gi|325949898|gb|EGD41958.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1] Length = 299 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 9/160 (5%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K R EV G K Y QKGTGRAR S QF GGG GP P PKK Sbjct: 36 RQGTHATKTRGEVRGGGRKPYKQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKK 95 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNF 163 +++ ALR ALSD+ + I V + + TK +T +A+ D L++ LDR+ Sbjct: 96 MKAAALRGALSDRARAGQIHVAE-FAFEAPSTKTALTALKAISDAKRFLVV----LDRSE 150 Query: 164 QLAA---RNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 AA RN P ++LL +N YD+L +V SK A E Sbjct: 151 SAAALSLRNAPEVHLLWADQLNTYDVLVSDDVVFSKPAYE 190 >gi|22297626|ref|NP_680873.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1] gi|46577259|sp|Q8DMN0|RL4_THEEB RecName: Full=50S ribosomal protein L4 gi|22293803|dbj|BAC07635.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1] Length = 210 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 10/212 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ V++ G D G ++ D+ KP+ I+ R L Q R G +K R+EV Sbjct: 1 MVACVVKDWQGADSGEATL--DLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 59 GGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRV 118 Query: 119 CSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 D++V+ + KTK LVT + ++ +++ + L+ARN+P + Sbjct: 119 --EDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLK 176 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LL +NV+D+L ++V + AI +++ + Sbjct: 177 LLRADQLNVFDLLYADRIVATTGAIAKIQEVY 208 >gi|28572368|ref|NP_789148.1| 50S ribosomal protein L4 [Tropheryma whipplei TW08/27] gi|46577236|sp|Q83I77|RL4_TROW8 RecName: Full=50S ribosomal protein L4 gi|28410499|emb|CAD66885.1| 50s ribosomal protein L4 [Tropheryma whipplei TW08/27] Length = 248 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 1/194 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +V ++ G G + + +F P ++ +V+ Q R G K+K R+EV+ +G K Sbjct: 6 TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG GPVP VH PKK+ AL L+++ + + Sbjct: 66 FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRSYVHRTPKKMIKAALAGCLTNRARAGRVH 125 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++D+ L T F+ LS+ L++ D + RNIP + L+ V +N Y Sbjct: 126 IVDSFGDTPSVADAL-TLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184 Query: 185 DILRCSKLVLSKSA 198 D+LR ++ ++ A Sbjct: 185 DVLRSDDVLFTRGA 198 >gi|320160415|ref|YP_004173639.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1] gi|319994268|dbj|BAJ63039.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1] Length = 208 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 2/201 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N+ G+ + + E IF ++ + Q R+G +K R+EV+ G K Sbjct: 3 VDVVNMQGQKVSSVELPESIFEAPIYIDLMHQAYVRQMANARLGTHDTKTRNEVSGGGRK 62 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S + G K P P V +P+K+R ALR ALS K N I Sbjct: 63 PWRQKGTGRARQGSTRSPVWAKGAKVHTPHPRSYVQLMPRKMRRAALRSALSVKAAENAI 122 Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +V+D L E KT+++ L D S ++I + + RN+P+ +L + Sbjct: 123 VVVDQLTLPEAKTRHMAQALNTLVGDASALVLIPEKEAYEGVIRSTRNLPDAKILLANYL 182 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N+ D+L K+V+ +A++ + Sbjct: 183 NIRDLLMFDKVVMPLAALDVI 203 >gi|295135700|ref|YP_003586376.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87] gi|294983715|gb|ADF54180.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87] Length = 208 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +S+S+ +F ++P + + ++ +R G K+K R+E+ + Sbjct: 1 MEVAVLDIKGKETGRKVSLSDAVFGIEPNEHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKLKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYGFKLNKALKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+++ KTK + +A+ + +LI+ G + ++N L++RN+ ++ V Sbjct: 121 NAITVVEDFSFDTPKTKNFIEVLKAIGIQEKKSLIVLG-ESNKNVYLSSRNLKGSEVVSV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL +V + ++E LE Sbjct: 180 SELSTYKILNAKSVVFMEGSLEGLE 204 >gi|257784962|ref|YP_003180179.1| 50S ribosomal protein L4/L1e [Atopobium parvulum DSM 20469] gi|257473469|gb|ACV51588.1| ribosomal protein L4/L1e [Atopobium parvulum DSM 20469] Length = 208 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 7/206 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N++G+ G +S D++ ++P ++ +V+ Q R G +K R EV+ Sbjct: 1 MSKYEIKNVEGKKVGTTELSSDVYGIEPNIPVVHQVVVCQDASARQGTHSTKNRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG FGP P + K+ LA+R LS K Sbjct: 61 GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRINNKMVKLAMRSVLSGKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS----NALIIDGCQLDRNFQLAARNIPNINLL 176 ++++++D+L + TK + L + ++ D D N L+ RN+P +++ Sbjct: 121 SELVLVDSLEFAQPSTKQAKAALQNLGIEGKRVTVIVPDD---DVNTYLSFRNLPKVSIF 177 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V + ++ LV+S + L Sbjct: 178 GVSEVTTRFLIDNGALVMSADVAKQL 203 >gi|213965010|ref|ZP_03393209.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum SK46] gi|213952546|gb|EEB63929.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum SK46] Length = 215 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +G G + + +F + ++ +V+ Q R G K K R EV G Sbjct: 4 LKLDVHTAEGGVNGSVELPASVFDAEVSIALMHQVVVAQRAAARQGTHKVKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GPVP PKK+ + ALR ALSD+ + Sbjct: 64 RKPWRQKGTGRARQGSIRAPHWTGGGIVHGPVPRDYSQRTPKKMIAAALRGALSDRARHD 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ LV + + F R + N L++ + D N + RN+P +++L Sbjct: 124 RIHVVEELVPGQTPSTKAARTFVERLTERHNVLVVLPRE-DVNSWKSVRNLPGVHILSED 182 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N YD+L+ ++ A++AL D Sbjct: 183 QLNTYDVLKADDVIF---AVQALND 204 >gi|26987196|ref|NP_742621.1| 50S ribosomal protein L4 [Pseudomonas putida KT2440] gi|148545740|ref|YP_001265842.1| 50S ribosomal protein L4 [Pseudomonas putida F1] gi|167031501|ref|YP_001666732.1| 50S ribosomal protein L4 [Pseudomonas putida GB-1] gi|170723905|ref|YP_001751593.1| 50S ribosomal protein L4 [Pseudomonas putida W619] gi|325272045|ref|ZP_08138486.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51] gi|46577244|sp|Q88QN4|RL4_PSEPK RecName: Full=50S ribosomal protein L4 gi|166199848|sp|A5VXP8|RL4_PSEP1 RecName: Full=50S ribosomal protein L4 gi|189042880|sp|B0KK68|RL4_PSEPG RecName: Full=50S ribosomal protein L4 gi|226730710|sp|B1JDW3|RL4_PSEPW RecName: Full=50S ribosomal protein L4 gi|24981834|gb|AAN66085.1|AE016238_3 ribosomal protein L4 [Pseudomonas putida KT2440] gi|148509798|gb|ABQ76658.1| LSU ribosomal protein L4P [Pseudomonas putida F1] gi|166857989|gb|ABY96396.1| ribosomal protein L4/L1e [Pseudomonas putida GB-1] gi|169761908|gb|ACA75224.1| ribosomal protein L4/L1e [Pseudomonas putida W619] gi|313496820|gb|ADR58186.1| RplD [Pseudomonas putida BIRD-1] gi|324102822|gb|EGC00228.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51] Length = 200 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+VA G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ ALR L++ S+ ++V+ + Sbjct: 63 GTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + LS+ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVEAPKTKDLLNKLNGMGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YEKVLITVSAVKKFEE 197 >gi|148982484|ref|ZP_01816780.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3] gi|145960449|gb|EDK25828.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3] Length = 200 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+LS+ LI+ G ++D N LAARN+ ++ V G+ Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELSDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEE 197 >gi|189347702|ref|YP_001944231.1| 50S ribosomal protein L4 [Chlorobium limicola DSM 245] gi|226730636|sp|B3EGY9|RL4_CHLL2 RecName: Full=50S ribosomal protein L4 gi|189341849|gb|ACD91252.1| ribosomal protein L4/L1e [Chlorobium limicola DSM 245] Length = 208 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V++++++IF + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNTGGTETGEVVTLNDEIFGADISEHAMYLDVKSILANRRQGTHKAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GRKPFRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKQLARRSALSAKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ E KTK + + L L+ ++ + D + RNI +N++ + Sbjct: 121 GQIVVVEDFRLGEIKTKPVADILKNLGLAEKKTLMLTPEYDMIIARSGRNIEALNIMSAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + YDIL +V K+A++ +ED Sbjct: 181 KASTYDILDSQAIVFQKAALKKIED 205 >gi|28493520|ref|NP_787681.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist] gi|46577234|sp|Q83FY7|RL4_TROWT RecName: Full=50S ribosomal protein L4 gi|28476562|gb|AAO44650.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist] Length = 248 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 1/194 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +V ++ G G + + +F P ++ +V+ Q R G K+K R+EV+ +G K Sbjct: 6 TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG GPVP VH PKK+ AL L+++ + + Sbjct: 66 FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRNYVHRTPKKMIKAALAGCLTNRARAGRVH 125 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++D+ L T F+ LS+ L++ D + RNIP + L+ V +N Y Sbjct: 126 IVDSFGDTPSVADAL-TLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184 Query: 185 DILRCSKLVLSKSA 198 D+LR ++ ++ A Sbjct: 185 DVLRSDDVLFTRGA 198 >gi|294669825|ref|ZP_06734884.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308218|gb|EFE49461.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 206 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G +S S+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKIINAQGQISGALSASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L KTK + + L L L + QLD N LA+RN+PN+ +L V Sbjct: 121 ERLYVVEELAVATPKTKEFAGQVKNLGLEQVLFVTK-QLDENVYLASRNLPNVLVLEVHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V ++ AI LE+++ Sbjct: 180 VDPYSLLRYKKVVFTRDAIAQLEEQW 205 >gi|320538164|ref|ZP_08038059.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421] gi|320144981|gb|EFW36702.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421] Length = 211 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 104/205 (50%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L + ++ + + R+G + +KGR+EV + Sbjct: 1 MEKKVYSVDGKELRTINLDDAVFGLPVNEDVIYYAVNNELANNRVGTACTKGRAEVNGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P + +PKK + LA++ LS K + Sbjct: 61 AKPYRQKGTGRARRGDKKSPILVGGGTIFGPKPRDYSYVMPKKAKRLAMKSLLSMKAQDD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+++ + KTK L ++ D + A +NIP ++ L + Sbjct: 121 RLTVVEDFTIESGKTKDLAKILSNFAERGRTVLILHDDDPMLKRAGKNIPRLSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ +SA++ L D + Sbjct: 181 RAHDLFYGRKVLILESAVKKLSDFY 205 >gi|300114735|ref|YP_003761310.1| 50S ribosomal protein L4/l1e [Nitrosococcus watsonii C-113] gi|299540672|gb|ADJ28989.1| ribosomal protein L4/L1e [Nitrosococcus watsonii C-113] Length = 206 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V++L + G + +S+ +FA + ++ +V+ + R G K RSEV Sbjct: 1 MELPVQSLSKNSETGTVQLSDAVFAQHFNESLIHQVITAYLAKARAGTRAHKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGGK F P + KK+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPGDYSQKVNKKMYRAAMRSILSELVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++D ++ + KTK L +++ N L++ + DRN +L+ARNIP + + V Sbjct: 121 DRLRMVDKIILSKPKTKDLAKLLKSITWRNVLVVV-AEDDRNLELSARNIPTVAISNVGR 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 ++ +++R +++++ AI E Sbjct: 180 VSPVELIRFDGVLITEDAIRCFE 202 >gi|119961638|ref|YP_948656.1| ribosomal protein L4 [Arthrobacter aurescens TC1] gi|119948497|gb|ABM07408.1| ribosomal protein L4 [Arthrobacter aurescens TC1] Length = 205 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135 S GGG GP P PKK+++ ALR ALSD+ + I VI LV+ + Sbjct: 67 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVIAELVAGTKPS 126 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K + RA+ L++ + + L+ RN+ I++L +N YD+L +V + Sbjct: 127 AKEALASLRAVSERKNLLVVIERANDVAALSVRNLAGIHVLYADQLNTYDVLISDDVVFT 186 Query: 196 KSAIEAL 202 K+A EA Sbjct: 187 KAAFEAF 193 >gi|84515209|ref|ZP_01002572.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53] gi|84511368|gb|EAQ07822.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53] Length = 109 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 62/103 (60%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+G G + +++ IF LKP++ IL RV+RWQ + G GRSEV+Y+ K+Y Q Sbjct: 7 NLEGAKAGSVELNDAIFGLKPRKDILHRVVRWQRNKAMAGTHDVLGRSEVSYSTKKIYRQ 66 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLAL 110 KGTG ARH SK FR GG GP P H L KK R+L L Sbjct: 67 KGTGGARHGSKGAPIFRHGGTYKGPTPRSHAHELTKKFRALGL 109 >gi|212716610|ref|ZP_03324738.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM 16992] gi|212660314|gb|EEB20889.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM 16992] Length = 221 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGNATGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|312884702|ref|ZP_07744403.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367615|gb|EFP95166.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDAAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEE 197 >gi|254412295|ref|ZP_05026070.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC 7420] gi|196181261|gb|EDX76250.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC 7420] Length = 205 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 8/206 (3%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 +RN GE+ G ++ + I+ R L Q R G + +K R+EV G K + Sbjct: 1 MRNWQGEEVGQATLELKVAKEDSASHIVHRALVRQMTNARQGTASTKTRAEVRGGGRKPW 60 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +RGGG FGP P + +K R LALR AL + + D++V Sbjct: 61 RQKGTGRARAGSNRSPLWRGGGIIFGPKPRDYNLKMNRKERRLALRTALQGR--AEDMIV 118 Query: 126 IDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + KTK L + R+ +D +++ Q + L+ARN+P+I L+ Sbjct: 119 VEEFADQLPRPKTKDLMDAIARW-GIDPKQKVLLILPQPAQQVYLSARNVPSIKLIYADS 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V + +A+ +++ + Sbjct: 178 LNVYDVLNADKIVTTNTALAKIQEVY 203 >gi|54022701|ref|YP_116943.1| 50S ribosomal protein L4 [Nocardia farcinica IFM 10152] gi|81603036|sp|Q5Z1W2|RL4_NOCFA RecName: Full=50S ribosomal protein L4 gi|54014209|dbj|BAD55579.1| putative ribosomal protein L4 [Nocardia farcinica IFM 10152] Length = 230 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 3/201 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V+ G+ G + + +IF + ++ +V+ Q R G +K R EV+ G K Sbjct: 18 LPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKK 77 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+ AL ALSD+ ++ I Sbjct: 78 PYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARNDRI 137 Query: 124 MVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+ LV+ + + F A D L++ G + D + N+ N+ + + Sbjct: 138 HVVSELVAGQTPSTKTAKNFLAELSDRKKFLVVVGRE-DVTAWKSVANLQNVQPIAPDQL 196 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 197 NTYDVLNSDDVVFSVEALNAF 217 >gi|85713374|ref|ZP_01044383.1| 50S ribosomal protein L4 [Idiomarina baltica OS145] gi|85692802|gb|EAQ30791.1| 50S ribosomal protein L4 [Idiomarina baltica OS145] Length = 201 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ KG + VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELTLKDA----KGALEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQNHEQKVNKKMYRGAVKSILSELIRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++N + KTK LV + + L+L++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLQVVENFELEAPKTKQLVAKLKELNLNDVLIVT-KEVDENLFLASRNLHKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ ++++ A++ LE+ Sbjct: 176 DPVSLIAFENVLMTADAVKQLEE 198 >gi|126662263|ref|ZP_01733262.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38] gi|126625642|gb|EAZ96331.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38] Length = 209 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V +++G++ G + +S+ +FA++P + + ++ +R G K+K R+EVA + Sbjct: 1 MEVKVLDINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGNHKAKERAEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSAKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSALSLKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++++V+++ TK + ++L L N +L + G ++N L++RN+ +++ Sbjct: 121 SNLVVVEDFTFDTPSTKNFINVLKSLGLDNKKSLFVLGDS-NKNVYLSSRNLKASSVVTT 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL LVL + A++ +E Sbjct: 180 SELSTYAILNAKSLVLLEGAVDGIE 204 >gi|119718124|ref|YP_925089.1| 50S ribosomal protein L4P [Nocardioides sp. JS614] gi|119538785|gb|ABL83402.1| LSU ribosomal protein L4P [Nocardioides sp. JS614] Length = 259 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K R EV G K Y QKGTGRAR S QF GGG GP P PKK Sbjct: 84 RQGTHATKTRGEVRGGGRKPYKQKGTGRARQGSTRAPQFAGGGTVHGPQPRSYDQRTPKK 143 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNF 163 ++ ALR ALSD+ ++ I V+++L++ E T+ + L + ++ + D Sbjct: 144 MKVAALRGALSDRARNDRIHVVESLITAEAPSTRTALAALSTLSERSRFLVVLERTDTVT 203 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 L+ RN P ++++ V +N YD+L +V ++ A +A Sbjct: 204 WLSLRNAPEVHIVAVDQLNTYDVLASDDVVFTQGAYDAF 242 >gi|254822786|ref|ZP_05227787.1| 50S ribosomal protein L4 [Mycobacterium intracellulare ATCC 13950] Length = 223 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 3/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ Sbjct: 8 TLKIDVKTPAGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGG 67 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 68 GRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARN 127 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I + +V+ + + F + L++ G + D + RN+P +++L Sbjct: 128 GRIHAVTEIVAGQTPSTKSARAFLGTLTERKQVLVVIG-RSDEAGAKSVRNLPGVHILTP 186 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 187 GQLNTYDVLRSDDVVFSVEALNA 209 >gi|284052649|ref|ZP_06382859.1| 50S ribosomal protein L4 [Arthrospira platensis str. Paraca] gi|291567785|dbj|BAI90057.1| 50S ribosomal protein L4 [Arthrospira platensis NIES-39] Length = 210 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +RN DGE+ G ++ + + I+ R L Q R G + +K RSEV Sbjct: 1 MVDCIIRNWDGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSRV-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLL 176 +DI+V++ V++ KTK L +S++ +++ + N L+ RN+ + + Sbjct: 119 DDIVVVEEFVTQLPRPKTKDLTAALERWGVSSSAKVLLVLPEKQENVYLSGRNVEKMRIC 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V + +A+ +++ + Sbjct: 179 LADSLNVYDVLAADKIVTTANALAKIQEVY 208 >gi|94968255|ref|YP_590303.1| 50S ribosomal protein L4 [Candidatus Koribacter versatilis Ellin345] gi|166234624|sp|Q1ISC1|RL4_ACIBL RecName: Full=50S ribosomal protein L4 gi|94550305|gb|ABF40229.1| LSU ribosomal protein L4P [Candidatus Koribacter versatilis Ellin345] Length = 217 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 107/208 (51%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V NL GE G +++++F + + V +++ + R G +K + V+ Sbjct: 1 MATIDVVNLSGEKVGSFELADEVFGAVNEDLLWEAVKHYRAGQHR-GTHATKNKKLVSGA 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +R GG GP P +A P+K ALR AL+ K Sbjct: 60 GKKLWKQKGTGRARVGSIRSPLWRHGGTVHGPQPRSYDYAFPRKKLLGALRSALAAKLAD 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+++ KE K L + AL+I+ + ++N +L++RN+ + L+ Sbjct: 120 GKLTVVESFDVKEPKANAFRKTLAGLKVDKTALLIESAE-NKNLELSSRNLKGVELVAGN 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y +LR + V+++ A+E L++ K Sbjct: 179 AVHPYHLLRYDRAVIARPALEKLQNSLK 206 >gi|239918198|ref|YP_002957756.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] gi|281415611|ref|ZP_06247353.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] gi|239839405|gb|ACS31202.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] Length = 211 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E SV+ + + + ++F ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MAENSVKTIQ------VDLPAELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P PKK+++ ALR ALSD+ + Sbjct: 55 GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLL 176 + V++ LVS TK +L+ L+ID + D L+ARN+P ++ L Sbjct: 115 GRVHVVEALVSGTTPSTKAAKAGLASLNTGRKNVLLVID--RADDVAALSARNLPAVHTL 172 Query: 177 PVQGINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V +++A EA Sbjct: 173 YADQLNTYDVLVSDDVVFTQAAYEA 197 >gi|260061898|ref|YP_003194978.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501] gi|88786031|gb|EAR17200.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501] Length = 209 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 113/204 (55%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +++D+F ++P + + ++ +R G K+K R+E+A + Sbjct: 1 MKVAVLDIKGKETGRKAELADDVFKIEPNEHAIYLDVKQYLAHQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSLKSQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+++ KT+ + +AL L + +LI+ G Q + + L++RN ++ Sbjct: 121 NAITVVEDFSFDTPKTRDFIDVLKALGLEDKKSLIVLGEQ-NNSVYLSSRNFKGAEVVTN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 ++ Y I+ + +VL++ A+E + Sbjct: 180 TELSTYKIMNANNVVLTEGALEGI 203 >gi|71905962|ref|YP_283549.1| 50S ribosomal protein L4 [Dechloromonas aromatica RCB] gi|109893589|sp|Q47JA2|RL4_DECAR RecName: Full=50S ribosomal protein L4 gi|71845583|gb|AAZ45079.1| LSU ribosomal protein L4P [Dechloromonas aromatica RCB] Length = 207 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G++ + S+ +F + ++ +++ R G + K RSEV +T Sbjct: 1 MELKVINEQGQEAAKLQASDVLFGRDFNEALVHQIVVAYQANARSGDRQQKDRSEVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F P + KK+ + LS+ Sbjct: 61 TKPWRQKGTGRARAGSNGSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMAAILSELARQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++VID+L KTK + +++ L L++ +L+ N L++RN+PN+ +L Q Sbjct: 121 DRLVVIDDLSVDAPKTKLFTQKLKSMGLEGNLLVITDELNENLYLSSRNLPNVLVLEAQE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +K++++K+A+ E+ + Sbjct: 181 ADPVSLVRFAKVLVTKNAVAKFEEMW 206 >gi|282878760|ref|ZP_06287528.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC 35310] gi|281299151|gb|EFA91552.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC 35310] Length = 209 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 116/211 (54%), Gaps = 14/211 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA R ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYRFKLNKKVKNLARRSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N I+++++ KTK V +++ L ++G + ++N L+ARN+ Sbjct: 121 NAIVIVEDFTLDAPKTKDFV------NIAKNLKVEGKKSLLVLPEANKNVYLSARNLQQA 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 +++ +N Y +L LV+++++++ +++ Sbjct: 175 DVMTASTLNTYKVLNADVLVVTENSLKVIDN 205 >gi|330815250|ref|YP_004358955.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3] gi|327367643|gb|AEA58999.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3] Length = 206 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGASVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ LR S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLRSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L + KTK L +F+A+ L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLSVVEQLTLEAPKTKLLAEKFKAMGLESVLVITDT-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEE 203 >gi|163752916|ref|ZP_02160040.1| 50S ribosomal protein L4 [Kordia algicida OT-1] gi|161326648|gb|EDP97973.1| 50S ribosomal protein L4 [Kordia algicida OT-1] Length = 209 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V +++G++ G ++S+ +FA++P + ++ +R G K+K R+E+A + Sbjct: 1 MEVAVLDINGKETGRKANLSDAVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA + AL+ K S Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRSYAQKLNKNVKRLARKSALTLKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+VI++ KTK + +AL L + +L + G + N L++RN+ +L Sbjct: 121 ESIIVIEDFDFDAPKTKNFINVLKALGLDSKKSLFVLGDS-NNNVYLSSRNLKTSEVLTS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ + +V+ + A+E +E Sbjct: 180 SELSTYKIVNANSIVVFEGALEGIE 204 >gi|189029498|sp|A9KD30|RL4_COXBN RecName: Full=50S ribosomal protein L4 Length = 205 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ +G Sbjct: 1 MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L E KT+ L + L+L N L IIDG DRN LA+RN+ +++ Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD--DRNINLASRNMVGVSVCDALH 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 179 VDPVSLVAAENIVVTVDAVKRLEERL 204 >gi|323344637|ref|ZP_08084861.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269] gi|323093907|gb|EFZ36484.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269] Length = 209 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P ++ ++ +R G +KSK RSE + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGIEPNDHVIYLDVKQYLANQRQGTAKSKERSEHRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD---LSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N I+V+++ + KTK V + L L L++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNMEAPKTKDFVNIAKNLKVEGLKTLLLL--PEVNKNVYLSARNLQKAEVMI 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV+++ +++ ++D Sbjct: 179 ASTLNTYKVLNADVLVVTEKSLKTIDD 205 >gi|167752386|ref|ZP_02424513.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216] gi|167660627|gb|EDS04757.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216] Length = 208 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 6/201 (2%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + +S+ +F ++ + ++ +R G KSK R+EVA + Sbjct: 1 MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGPVP L KK++ LA R AL+ K + Sbjct: 61 TRKLKRQKGTGGARCGSIKSPLFVGGGRVFGPVPRDYSFKLNKKLKQLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 I V++ + KTK +V AL +++ L++ + N QL+ RN+P + + Sbjct: 121 GAICVVEPISMDAPKTKSIVAMAEALKVADKKVLLVLPDSNV--NLQLSCRNLPYVKAIL 178 Query: 178 VQGINVYDILRCSKLVLSKSA 198 +N Y+++ S LV+ + A Sbjct: 179 ASNVNTYEVMNASALVMVEGA 199 >gi|33152957|ref|NP_874310.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP] gi|46577205|sp|Q7VKD3|RL4_HAEDU RecName: Full=50S ribosomal protein L4 gi|33149182|gb|AAP96699.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ ++V++ + KT Sbjct: 71 DIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQERLVVVEKFEVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K+LV + + L L++ALII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KFLVQKLKDLALNDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVITT 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|169630899|ref|YP_001704548.1| 50S ribosomal protein L4 [Mycobacterium abscessus ATCC 19977] gi|169242866|emb|CAM63894.1| 50S ribosomal protein L4 [Mycobacterium abscessus] Length = 213 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ G+ G I + ++F +L +V+ Q R G +K R V+ G Sbjct: 1 MKIAVKAPGGKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 61 KKPYRQKGTGRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNG 120 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I + LV+ +E TK + + L++ + D + RN+PN+++L Sbjct: 121 RIHAVTELVAGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L+ +V S +EAL Sbjct: 181 LNTYDVLKADDVVFS---VEAL 199 >gi|313665576|ref|YP_004047447.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50] gi|312949403|gb|ADR23999.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50] Length = 208 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 6/198 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V + G + I++++ ++ ++P QQ I V+ Q+ R G K K R+EV+ Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQA-ALRQGTKKVKTRAEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q++GGG FGP P I ++ KKVR+LA R LS K Sbjct: 60 GRKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++++D + TK +V + L D LI+ + + + ++ NI + + Sbjct: 120 ENNLVIVDKFDFAKPSTKEMVLVMKNLKIDDQKTLIVTKEKEELVVK-SSNNITGVKTIS 178 Query: 178 VQGINVYDILRCSKLVLS 195 +NV+D+L +KL+++ Sbjct: 179 ANQLNVFDLLNATKLLIT 196 >gi|253991687|ref|YP_003043043.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783137|emb|CAQ86302.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica] Length = 201 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKEMSLEDVLIITG-EVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|323144965|ref|ZP_08079525.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066] gi|322415244|gb|EFY06018.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066] Length = 203 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 4/199 (2%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G DKG + VSE F + + ++ +V+ R G K RSEV+ G K + QKGT Sbjct: 7 GADKG-LEVSESTFGREFNEALVHQVVVAYQSTARAGTKAQKTRSEVSGGGKKPFRQKGT 65 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S +R GG F P + +K+ +A+R LS + ++V+ + Sbjct: 66 GRARAGSSRSPLWRAGGTIFAAKPQDWTQKVNRKMYRVAMRSILSQLVREDRLLVVGDFK 125 Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP--VQGINVYDILR 188 + KTK LV + + LDL N LI++G + D + LA+RN+ + + N +++ Sbjct: 126 LENHKTKTLVAKLKELDLKNVLIVNG-EFDSDLFLASRNLYKVEVCQPGTAEFNPINLIN 184 Query: 189 CSKLVLSKSAIEALEDRFK 207 K+V++++A++ +E+ K Sbjct: 185 FDKVVMTEAAVKKVEEMLK 203 >gi|206602676|gb|EDZ39157.1| Ribosomal protein L4 [Leptospirillum sp. Group II '5-way CG'] Length = 218 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 5/175 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L +++ Q R G + +K R EV+ G K Y QKGTGRAR S Q+RGG FG Sbjct: 32 LLHEIIQMQRAGIRSGTASTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQWRGGAIIFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--- 148 P P + P K LA+++A+ + + ++D+L KTK L+ F L Sbjct: 92 PRPRDYFYRQPAKKIVLAVKNAIFSHLENKSLYLVDSLDIPSRKTKDLIALFNKWSLFPG 151 Query: 149 -SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LIID L N + RNIP + +L +N YD+L K+++SK A E + Sbjct: 152 EERILIIDNG-LSENIYYSCRNIPGLEILLPHQVNPYDLLIADKVLVSKEAFENM 205 >gi|225351044|ref|ZP_03742067.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158500|gb|EEG71742.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 221 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGNAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|289706534|ref|ZP_06502884.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58] gi|289556669|gb|EFD50010.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58] Length = 211 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E SV+ + + + ++F ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MAENSVKTIQ------VDLPVELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P PKK+++ ALR ALSD+ + Sbjct: 55 GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLL 176 + VI+ LVS TK +L+ L+ID + D L+ARN+P ++ L Sbjct: 115 GRVHVIEALVSGTTPSTKAAKAGLASLNTGRKNVLLVID--RADDVAALSARNLPAVHTL 172 Query: 177 PVQGINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V +++A EA Sbjct: 173 YADQLNTYDVLVSDDVVFTQAAYEA 197 >gi|254506493|ref|ZP_05118635.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16] gi|219550667|gb|EED27650.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16] Length = 197 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 8 LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V+DN + KT Sbjct: 68 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVDNFSVEAPKT 127 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ALI+ ++D N LAARN+ ++ V GI+ ++ K+V++ Sbjct: 128 KELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGIDPVSLIAFDKVVMTA 186 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 187 EAVKQVEE 194 >gi|44210|emb|CAA29705.1| unnamed protein product [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V + G + I++++ ++ ++P QQ I V+ Q+ R G K K R+EV+ Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQA-ALRQGTKKVKTRAEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 G K + QKGTG AR S Q++GG FGP P I ++ KKVR+LA R LS K Sbjct: 60 GRKPWKQKGTGLARQGSIRAPQWKGGEVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 N+++++D + TK +V + L D LI+ + + + ++ NI + + Sbjct: 120 ENNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVK-SSNNITGVKTIS 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 179 ANQLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|119025340|ref|YP_909185.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703] gi|154486748|ref|ZP_02028155.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis L2-32] gi|166234637|sp|A1A070|RL4_BIFAA RecName: Full=50S ribosomal protein L4 gi|118764924|dbj|BAF39103.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703] gi|154084611|gb|EDN83656.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis L2-32] Length = 221 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + +IF ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGKATGTVDAPAEIFGFSAEEVQSRIPLIHQVVIAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|153004774|ref|YP_001379099.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5] gi|166234631|sp|A7HBL9|RL4_ANADF RecName: Full=50S ribosomal protein L4 gi|152028347|gb|ABS26115.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5] Length = 206 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LD + G I +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLDKKKVGEIELADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ E KT L AL++D + + RN+ + L +G Sbjct: 121 QKLVIVQEWKPAEPKTSAAAKVLAKLGARKALVVDAAANAALAR-SVRNLDGSDFLAAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NVYDIL+ LVL+ + LE Sbjct: 180 LNVYDILKHDALVLTAETAKMLE 202 >gi|262273378|ref|ZP_06051192.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886] gi|262222356|gb|EEY73667.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN KTK L+ + + L+L+ ALI+ ++D N LAARN+ +++ GI Sbjct: 116 RLIVVDNFSVAAPKTKELIAKLKELELTEALIVT-AEVDENLFLAARNLYKVDVRDAAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ +A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAAAVKQVEE 197 >gi|315655880|ref|ZP_07908778.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333] gi|315489944|gb|EFU79571.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333] Length = 214 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 2/194 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K + QKGT Sbjct: 14 GKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + I V+ + Sbjct: 74 GRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFG 133 Query: 131 SKEC-KTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 KE TK + +D ALI+ ++D L+ N+ + L V +N YD+L Sbjct: 134 VKETPSTKVAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLA 193 Query: 189 CSKLVLSKSAIEAL 202 +V S +A+++ Sbjct: 194 NDDVVFSATALDSF 207 >gi|298345471|ref|YP_003718158.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063] gi|315656194|ref|ZP_07909085.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235532|gb|ADI66664.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063] gi|315493196|gb|EFU82796.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 214 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 2/194 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K + QKGT Sbjct: 14 GKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + I V+ + Sbjct: 74 GRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFG 133 Query: 131 SKEC-KTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 KE TK + +D ALI+ ++D L+ N+ + L V +N YD+L Sbjct: 134 VKETPSTKAAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLA 193 Query: 189 CSKLVLSKSAIEAL 202 +V S +A+++ Sbjct: 194 NDDVVFSATALDSF 207 >gi|104779756|ref|YP_606254.1| 50S ribosomal protein L4 [Pseudomonas entomophila L48] gi|166199846|sp|Q1IFW5|RL4_PSEE4 RecName: Full=50S ribosomal protein L4 gi|95108743|emb|CAK13437.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Pseudomonas entomophila L48] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+VA G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ ALR L++ S+ ++V+ + Sbjct: 63 GTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVEAPKTKDLLNKLNGMGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YEKVLITVSAVKKFEE 197 >gi|193216760|ref|YP_002000002.1| 50S ribosomal protein L4 [Mycoplasma arthritidis 158L3-1] gi|193002083|gb|ACF07298.1| ribosomal protein L4 [Mycoplasma arthritidis 158L3-1] Length = 260 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 9/191 (4%) Query: 18 SVSEDIFAL-KP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++ + +F L KP Q + +L + KR+ K+K R+EV+ TG K + QKGTG AR Sbjct: 70 TLPKSVFGLEKPYNQAVFDTILS-ERGAKRLATHKTKTRAEVSGTGKKPWAQKGTGNARA 128 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S F GGG+ FGP P H + KKVR AL ALS S ++V D +++K Sbjct: 129 GSMRSPIFVGGGRVFGPTPERNYHLKVNKKVRKNALFTALSALAASQAVLVKDIMMTKPS 188 Query: 135 KTKYLV--TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 LV T+ + L+ LI+ D N L+ARN+PN+ + V ++V ++R L Sbjct: 189 TRDMLVELTKEKLNALNYVLIVSN---DENVYLSARNLPNVEVTRVTSLSVESLVRADAL 245 Query: 193 VLSKSAIEALE 203 V+SK +IE LE Sbjct: 246 VISKESIEWLE 256 >gi|229496144|ref|ZP_04389864.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis ATCC 35406] gi|229316722|gb|EEN82635.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis ATCC 35406] Length = 209 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G V +D +F ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVSVYNVKGEDTGRKVVLDDAVFGIEPNDHAIYLAVKLYRANQRQGTHKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK+ LA R ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPRPRSYSFKLNKKLVRLARRSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I V++ KTK V AL L+ + + N L+ARN+P+ + Sbjct: 121 QEIKVVEAFDFAAPKTKDFVALTSALGLAGKKTLFVMNNIPANVYLSARNVPSARIANAV 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N Y +L ++LV ++ AI + FK Sbjct: 181 SLNTYSVLDATQLVFTEEAIATANEMFK 208 >gi|16329940|ref|NP_440668.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803] gi|2500235|sp|P73319|RL4_SYNY3 RecName: Full=50S ribosomal protein L4 gi|1652426|dbj|BAA17348.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803] Length = 210 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G S++ + + I+ R L Q R G + +K R+EV Sbjct: 1 MVDCIVKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A++ + + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTAIASR--A 118 Query: 121 NDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 ++++V++ + + KTK L +TR+ A L+I ++ N L+ RNIP + + Sbjct: 119 DNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILD-EIPENVFLSGRNIPYLKI 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L +N+YD+L +V + +A+E +++ + Sbjct: 178 LRADNLNIYDVLVADTIVATATALEKIQEVY 208 >gi|84394647|ref|ZP_00993339.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01] gi|86148880|ref|ZP_01067132.1| 50S ribosomal protein L4 [Vibrio sp. MED222] gi|218710748|ref|YP_002418369.1| 50S ribosomal protein L4 [Vibrio splendidus LGP32] gi|254803764|sp|B7VLF6|RL4_VIBSL RecName: Full=50S ribosomal protein L4 gi|84374729|gb|EAP91684.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01] gi|85833332|gb|EAQ51538.1| 50S ribosomal protein L4 [Vibrio sp. MED222] gi|218323767|emb|CAV20124.1| Ribosomal protein L4 [Vibrio splendidus LGP32] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELIRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V G+ Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEE 197 >gi|308047992|ref|YP_003911558.1| 50S ribosomal protein L4P [Ferrimonas balearica DSM 9799] gi|307630182|gb|ADN74484.1| LSU ribosomal protein L4P [Ferrimonas balearica DSM 9799] Length = 201 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 1/193 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + + ++ +V+ + R G K R+EV TG K + QKGTGRA Sbjct: 9 QSALEVSETTFGREFNEALVHQVVVAYAANARQGTRAQKTRAEVTGTGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +R GG +F P + KK+ ALR LS+ + ++V++ + Sbjct: 69 RSGTVKSPIWRSGGVSFAAKPQDHGQKVNKKMYRAALRSILSELVRQDRLIVVEKFAVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + L+L++ LI+ G ++D N LA+RN+ +++ GI+ ++ K++ Sbjct: 129 PKTKELVGKLKELELNDVLIVTG-EVDENLFLASRNLYKVDVRDADGIDPVSLIAFDKVL 187 Query: 194 LSKSAIEALEDRF 206 ++ A++ +E++ Sbjct: 188 MTADAVKQIEEKL 200 >gi|437924|emb|CAA79778.1| ribosomal protein L4 [Thermotoga maritima] Length = 235 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRA H S +R GG GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRASHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLD--RNFQLAARNIPNINLL 176 N ++V+D+L + KTK L + L LS+ L++ + + N +L+ RN+P++ ++ Sbjct: 121 NKLLVLDHLKLERPKTKSLKEILQNLQLSDKKTLMVLPWKEEGYMNVKLSGRNLPDVKVI 180 Query: 177 ----P-----------VQGINVYDILRCSKLVLSKSAIEALED 204 P + G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEE 223 >gi|54307542|ref|YP_128562.1| 50S ribosomal protein L4 [Photobacterium profundum SS9] gi|90415163|ref|ZP_01223112.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK] gi|81615627|sp|Q6LVB5|RL4_PHOPR RecName: Full=50S ribosomal protein L4 gi|46911962|emb|CAG18760.1| putative ribosomal protein L4 [Photobacterium profundum SS9] gi|90323710|gb|EAS40342.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK] Length = 200 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRTGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L + + LDLS+ LI+ G +LD N LAARN+ +++ I Sbjct: 116 RLIVVDNFSVEAPKTKELAAKLKELDLSDVLIVTG-ELDENLFLAARNLYKVDVRDAATI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ +A++ +E+ Sbjct: 175 DPVSLIAFDKIVMTAAAVKQVEE 197 >gi|324510849|gb|ADY44533.1| 39S ribosomal protein L4 [Ascaris suum] Length = 298 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ +++ + G+I + ++F P+ IL R + WQ + + +K + E+ G K Sbjct: 68 SLNSVEEKRSGIIDLHPEVFRCTPRIDILHRNVTWQLVYRNVQFTKQLSKGEMPGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP +R L AL+ K ND+ Sbjct: 128 WPQKKTGRAHAGSIRSPQFYAGGFANGVRGPRTWFYMLPDAIRLQGLCVALTIKHAQNDL 187 Query: 124 MVIDNLVS-KECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D+ S + +YL + R S + + ++ N A IP+ N++PV G Sbjct: 188 VVVDDFGSLPNAEPQYLHDLADARNWGYSVLFVTESSEVPSNLADACDGIPSFNIMPVYG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N Y I++ +VL + A+E LE R Sbjct: 248 LNCYSIMKYETIVLCRLALEILEYR 272 >gi|269104013|ref|ZP_06156710.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp. damselae CIP 102761] gi|268163911|gb|EEZ42407.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp. damselae CIP 102761] Length = 200 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + ++ +V+ + R G K RS+V+ G+K + QKGTGRAR Sbjct: 11 LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGGAKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG +F P + KK+ A++ LS+ ++V++N + KT Sbjct: 71 TMRSPIWRKGGVSFAARPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFSVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + L+L++ALI+ G +LD N LAARN+ +++ + I+ ++ K+V++ Sbjct: 131 KALVAKLNELELTDALIVTG-ELDENLFLAARNLYKVDVRDAKAIDPVSLIAFEKVVMTA 189 Query: 197 SAIEALED 204 A++A+E+ Sbjct: 190 DAVKAVEE 197 >gi|209528358|ref|ZP_03276809.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328] gi|209491211|gb|EDZ91615.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328] Length = 210 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +RN +GE+ G ++ + + I+ R L Q R G + +K RSEV Sbjct: 1 MVDCVIRNWEGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSR--A 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-----------QLDRNFQLAARN 169 DI+V++ V++ + R + DL++AL G + N L+ RN Sbjct: 119 EDIVVVEEFVTQ-------LPRPKTKDLTDALARWGVSPEAKVLLVLPEKQENVYLSGRN 171 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + I + +NVYD+L K+V + +A+ +++ + Sbjct: 172 VAKIRICLADSLNVYDVLAADKIVTTANALAKIQEVY 208 >gi|50955565|ref|YP_062853.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07] gi|81612625|sp|Q6ACZ6|RL4_LEIXX RecName: Full=50S ribosomal protein L4 gi|50952047|gb|AAT89748.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 221 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 7/203 (3%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V +L G+ G I + + +F ++ ++ +V+ Q R G K+K R EV+ G K Sbjct: 5 IDVVDLKGKKAGSIELPDSLFDVQTNIPLIHQVVTAQLAAARQGTHKTKNRGEVSGAGRK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ + I Sbjct: 65 PFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRDYSQRTPKKMIAAALLGALSDRARGSRI 124 Query: 124 MVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLA---ARNIPNINLLPVQ 179 + + E TK +V + S +++ L+R+ +LA RNI +++ L Sbjct: 125 HAVQAFTAGEAPSTKAVVELLSGVATSKHVLV---VLERDDELAFKSVRNIASVHALTYD 181 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A+E Sbjct: 182 QLNAYDVLVSDDIVFTQAALEGF 204 >gi|291613237|ref|YP_003523394.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1] gi|291583349|gb|ADE11007.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1] Length = 206 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N +G+ I+ S+D+F + + ++ +++ R SK KGRSE+A + Sbjct: 1 MELKVINENGKAGASINASDDLFGREYNETLVHQLVTAYQANARSANSKQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P + +K+ L S Sbjct: 61 RKPFAQKGTGRARAGMASSPLWRGGGKIFPNSPDQNYTQKINRKMYRAGLASIYSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D L KTK L + +A+ L LII +D N L++RN+PN+ ++ Sbjct: 121 GRLSVVDALSVDAPKTKLLAQKIKAMGLDRVLIITDS-MDENLYLSSRNLPNVLVVEAHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++R ++V+++ A+ +E+ Sbjct: 180 ADPVSLVRFPQVVVTRGALAKIEE 203 >gi|254785080|ref|YP_003072508.1| 50S ribosomal protein L4 [Teredinibacter turnerae T7901] gi|259491576|sp|C5BQ62|RL4_TERTT RecName: Full=50S ribosomal protein L4 gi|237685352|gb|ACR12616.1| ribosomal protein L4 [Teredinibacter turnerae T7901] Length = 204 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ G KG ++VSE F + Q ++ + + R G K R+ V+ G Sbjct: 1 MELSIVTPQGA-KGTVAVSEVAFGKEFNQDLVHQAVVAYMAGSRQGTKAQKNRAAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P L KK+ ALR LS+ Sbjct: 60 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPRDFEQKLNKKMYRAALRCILSELARQE 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + DL++ALI+ Q+ N LAARN+ +++ VQ I Sbjct: 120 RLVVVEEFDLDAPKTKILVQKLAEYDLTDALIVSE-QVSENLYLAARNLHKVDVRDVQAI 178 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++R K+V++ SA++ LE+ Sbjct: 179 DPVSLIRFEKVVMTVSAVKKLEE 201 >gi|88801218|ref|ZP_01116759.1| 50S ribosomal protein L4 [Reinekea sp. MED297] gi|88776056|gb|EAR07290.1| 50S ribosomal protein L4 [Reinekea sp. MED297] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 107/193 (55%), Gaps = 1/193 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K + ++E F + + ++ +V+ R G +K RS VA G+K + QKGTGRA Sbjct: 9 KSKVELNEATFGNEFNEALVHQVVTAYMAGARQGTRATKNRSAVAGGGAKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + + GGG +F P + KK+ A++ LS+ ++V+++L + Sbjct: 69 RAGTIRSPIWVGGGHSFARAPQDWSQKVNKKMYRGAMKSILSELVRQERLVVVEDLKFDK 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK + + + +D+SNAL++ +D+N L+ARN+P++ + V G+N +++ K+V Sbjct: 129 PKTKDFLAKMKEIDVSNALVV-ADDVDQNLYLSARNVPHVEVSDVAGLNPVNLVAYDKVV 187 Query: 194 LSKSAIEALEDRF 206 ++ +AI L++ F Sbjct: 188 VTVAAINKLQEVF 200 >gi|78189806|ref|YP_380144.1| 50S ribosomal protein L4 [Chlorobium chlorochromatii CaD3] gi|109893584|sp|Q3APH4|RL4_CHLCH RecName: Full=50S ribosomal protein L4 gi|78172005|gb|ABB29101.1| LSU ribosomal protein L4P [Chlorobium chlorochromatii CaD3] Length = 208 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V+ + +DIF ++ + + ++ KR G K+K RSEV Sbjct: 1 MELKVLNTAGTETGEVVILRDDIFGIEISEHAMYLDVKSILANKRQGTHKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GKKPFRQKGTGNARQGSSRSPIHVGGGTIFGPQPHTYEQKVNKKVKLLARRSALSAKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+D+ KTK + LD L++ + D + RNI + ++ Sbjct: 121 GKIVVVDDFRFDAIKTKPFADILKNLGLDAKKTLLL-MPEYDMVVNRSGRNIAKLEIMTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + YDIL + L++ KSA++ +++ Sbjct: 180 DKASTYDILYSNTLLVQKSALKTIDE 205 >gi|126657989|ref|ZP_01729141.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110] gi|126620627|gb|EAZ91344.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110] Length = 210 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGEEVGQATLELKVAKDETASHLLHRAVVRHLANARQGTASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+ + + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFGLKMNRKERRLALRTAIGSR--A 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + + KTK L + ++ + + + + D N L+ARNI + ++ Sbjct: 119 EDMIVVENFAEQLPQPKTKELASALGRWGVEPNQKVALVLVETDENIYLSARNICYLKIM 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ A+ +++ + Sbjct: 179 RADSLNVYDLLDADKIVITSEALTKIQEVY 208 >gi|304391027|ref|ZP_07372979.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325910|gb|EFL93156.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 214 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 2/194 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K + QKGT Sbjct: 14 GKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + I V+ + Sbjct: 74 GRARQGSIRAPQFAGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFG 133 Query: 131 SKEC-KTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 KE TK + +D ALI+ ++D L+ N+ + L V +N YD+L Sbjct: 134 VKETPSTKAAKAALQGVVDNRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLA 193 Query: 189 CSKLVLSKSAIEAL 202 +V S +A+++ Sbjct: 194 NDDVVFSATALDSF 207 >gi|268316409|ref|YP_003290128.1| 50S ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252] gi|262333943|gb|ACY47740.1| ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252] Length = 214 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V LDG + G +++ +F ++P +L ++ +R G K K R+E A++ Sbjct: 1 MELQVYRLDGSESGRTVTLDPTVFEIEPNDHVLWLDVKRIEANRRQGTHKVKNRAENAHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR RGGG A GP P + +K + LA R AL+ K + Sbjct: 61 TRKLYRQKGTGYARAGDAKSPIRRGGGTAHGPQPRSYELKVNRKTQRLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I V+++ ++ T+ L+ A L++ L++ G + + L++RN+P + +L Sbjct: 121 EAIRVVEDFTFEQPSTRRLLEVLAAQGLADRKVLLLTG-EYNPALYLSSRNLPKVRVLEA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + + D+L L++ +SA+E L Sbjct: 180 RNASTRDLLDAQVLLMQESAVEVL 203 >gi|27364214|ref|NP_759742.1| 50S ribosomal protein L4 [Vibrio vulnificus CMCP6] gi|37678560|ref|NP_933169.1| 50S ribosomal protein L4 [Vibrio vulnificus YJ016] gi|320157600|ref|YP_004189979.1| 50S ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O] gi|46577170|sp|Q7MPI7|RL4_VIBVY RecName: Full=50S ribosomal protein L4 gi|46577257|sp|Q8DE40|RL4_VIBVU RecName: Full=50S ribosomal protein L4 gi|27360332|gb|AAO09269.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus CMCP6] gi|37197300|dbj|BAC93140.1| ribosomal protein L4 [Vibrio vulnificus YJ016] gi|319932912|gb|ADV87776.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 11 LTVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V+DN + KT Sbjct: 71 TIRSPLWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVDNFSVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI+ ++ +K++++ Sbjct: 131 KELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGIDPVSLIAFNKVLMTA 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQVEE 197 >gi|17564584|ref|NP_505181.1| hypothetical protein T23B12.2 [Caenorhabditis elegans] gi|2384911|gb|AAB69933.1| Hypothetical protein T23B12.2 [Caenorhabditis elegans] Length = 299 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 7/208 (3%) Query: 6 VRNLDG-EDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 V NLD ED+ G++ + DIF P+ IL R L WQS + + +K ++E+ G Sbjct: 53 VSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGR 112 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRA S QF GG A G P + LP VR L AL+ K + Sbjct: 113 KPWPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHTQD 172 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLS-NALIIDGC-QLDRNFQLAARNIPNINLLPV 178 D+ ++D + + + KY + A + + L +D C ++ A + +P +N++PV Sbjct: 173 DLHIVDKIQNLQNGDPKYWIDLCEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPV 232 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+N + +++ +VLS+SA+E +E+R Sbjct: 233 YGLNCFSLMKYDTIVLSRSALERVEERL 260 >gi|281423838|ref|ZP_06254751.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302] gi|299141148|ref|ZP_07034285.1| ribosomal protein L4/L1 family protein [Prevotella oris C735] gi|281402065|gb|EFB32896.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302] gi|298577108|gb|EFI48977.1| ribosomal protein L4/L1 family protein [Prevotella oris C735] Length = 209 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 115/204 (56%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVNLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V++++ + KTK V + + + ++ ++++N L+ARNI ++ Sbjct: 121 NAVVVVEDINFEAPKTKEFVNFTKNIKVEGKKTLVLLPEVNKNVYLSARNIQGAEVMTAT 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L +V+++SA++A++ Sbjct: 181 SLNSYKVLNADVVVIAESALKAID 204 >gi|15642590|ref|NP_232223.1| 50S ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729002|ref|ZP_01682005.1| ribosomal protein L4 [Vibrio cholerae V52] gi|147673082|ref|YP_001218089.1| 50S ribosomal protein L4 [Vibrio cholerae O395] gi|153827401|ref|ZP_01980068.1| ribosomal protein L4 [Vibrio cholerae MZO-2] gi|227082712|ref|YP_002811263.1| ribosomal protein L4 [Vibrio cholerae M66-2] gi|229507353|ref|ZP_04396858.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286] gi|229509724|ref|ZP_04399205.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33] gi|229513518|ref|ZP_04402982.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21] gi|229516848|ref|ZP_04406294.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9] gi|229521661|ref|ZP_04411079.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80] gi|229524576|ref|ZP_04413981.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis VL426] gi|229527475|ref|ZP_04416867.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)] gi|229606859|ref|YP_002877507.1| 50S ribosomal protein L4 [Vibrio cholerae MJ-1236] gi|254851135|ref|ZP_05240485.1| ribosomal protein L4 [Vibrio cholerae MO10] gi|255744436|ref|ZP_05418388.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101] gi|258620528|ref|ZP_05715566.1| 50S ribosomal protein L4 [Vibrio mimicus VM573] gi|258625741|ref|ZP_05720620.1| 50S ribosomal protein L4 [Vibrio mimicus VM603] gi|261211150|ref|ZP_05925439.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341] gi|262166616|ref|ZP_06034353.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223] gi|262170154|ref|ZP_06037843.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27] gi|262170468|ref|ZP_06038146.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451] gi|262401882|ref|ZP_06078447.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586] gi|298500581|ref|ZP_07010385.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757] gi|46396660|sp|Q9KNY5|RL4_VIBCH RecName: Full=50S ribosomal protein L4 gi|172047550|sp|A5F548|RL4_VIBC3 RecName: Full=50S ribosomal protein L4 gi|254803763|sp|C3LRQ7|RL4_VIBCM RecName: Full=50S ribosomal protein L4 gi|9657182|gb|AAF95736.1| ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628725|gb|EAX61193.1| ribosomal protein L4 [Vibrio cholerae V52] gi|146314965|gb|ABQ19504.1| ribosomal protein L4 [Vibrio cholerae O395] gi|149738674|gb|EDM53016.1| ribosomal protein L4 [Vibrio cholerae MZO-2] gi|227010600|gb|ACP06812.1| ribosomal protein L4 [Vibrio cholerae M66-2] gi|227014484|gb|ACP10694.1| ribosomal protein L4 [Vibrio cholerae O395] gi|229335107|gb|EEO00592.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)] gi|229338157|gb|EEO03174.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis VL426] gi|229341255|gb|EEO06259.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80] gi|229345911|gb|EEO10883.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9] gi|229349395|gb|EEO14351.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21] gi|229353198|gb|EEO18137.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33] gi|229354858|gb|EEO19779.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286] gi|229369514|gb|ACQ59937.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae MJ-1236] gi|254846840|gb|EET25254.1| ribosomal protein L4 [Vibrio cholerae MO10] gi|255737961|gb|EET93354.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101] gi|258581979|gb|EEW06849.1| 50S ribosomal protein L4 [Vibrio mimicus VM603] gi|258587407|gb|EEW12118.1| 50S ribosomal protein L4 [Vibrio mimicus VM573] gi|260839651|gb|EEX66262.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341] gi|261891544|gb|EEY37530.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451] gi|262021562|gb|EEY40274.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27] gi|262026332|gb|EEY45000.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223] gi|262351854|gb|EEZ00985.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586] gi|297540750|gb|EFH76807.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757] gi|327485077|gb|AEA79484.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae LMA3894-4] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 105/188 (55%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V++N + KT Sbjct: 71 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFSVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ LI+ G ++D N LAARN+ +++ V GI+ ++ K++++ Sbjct: 131 KALVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTA 189 Query: 197 SAIEALED 204 +A++ +E+ Sbjct: 190 AAVKQVEE 197 >gi|310288023|ref|YP_003939282.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17] gi|311064896|ref|YP_003971622.1| 50S ribosomal protein L4 RplD [Bifidobacterium bifidum PRL2010] gi|309251960|gb|ADO53708.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17] gi|310867216|gb|ADP36585.1| RplD 50S ribosomal protein L4 [Bifidobacterium bifidum PRL2010] Length = 221 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 5/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + ++F ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDGKGQATGSVEAPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + ++V+D V+ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 +N YD++ +V +K +EA D Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAFVD 211 >gi|269796254|ref|YP_003315709.1| 50S ribosomal protein L4P [Sanguibacter keddieii DSM 10542] gi|269098439|gb|ACZ22875.1| LSU ribosomal protein L4P [Sanguibacter keddieii DSM 10542] Length = 234 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 9/207 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + + V + G+ G + ++F ++ ++ +V+ Q R G +K R EV Sbjct: 4 TLTVDVIDAKGKKAGTADLPAEVFDVQTNIPLIHQVVVAQLAAARQGTHDTKNRGEVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 64 GRKPYKQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 123 Query: 121 NDIMVIDNL-VSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAA---RNIPNINL 175 I V+ + TK +T L N L++ L+R +L RN ++L Sbjct: 124 GRIHVVTGFGIDGSPSTKQALTSLANLAPRRNVLVV----LERGDELTVKSLRNAEQVHL 179 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 L +N YD+L +V +K A++A Sbjct: 180 LVADQLNTYDVLVSDDVVFTKGALDAF 206 >gi|183601945|ref|ZP_02963314.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis HN019] gi|219682858|ref|YP_002469241.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis AD011] gi|241190434|ref|YP_002967828.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195840|ref|YP_002969395.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254803716|sp|B8DW14|RL4_BIFA0 RecName: Full=50S ribosomal protein L4 gi|183218830|gb|EDT89472.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis HN019] gi|219620508|gb|ACL28665.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis AD011] gi|240248826|gb|ACS45766.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250394|gb|ACS47333.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178158|gb|ADC85404.1| LSU ribosomal protein L1E [Bifidobacterium animalis subsp. lactis BB-12] gi|295793421|gb|ADG32956.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis V9] Length = 218 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + +G++ G + E +F ++ ++ +V+ Q R G K R Sbjct: 4 VTLNVTDNNGKEAGTLEAPEALFGFTAEEVQAHVPLIHQVVVAQRAAARQGTHAVKNRGA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG A GPVP PKK+++ ALR+ALSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGVAHGPVPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D + TK + + N + + + N L+ RNIP + + Sbjct: 124 RANNGRVAVVDFQLDAPS-TKKAIAALAPVVADNFTTVVLSRDNVNEWLSVRNIPTVYPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +EA Sbjct: 183 FADQLNTYDVITAQYVVFSKDGLEAF 208 >gi|293190258|ref|ZP_06608754.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus F0309] gi|292821074|gb|EFF80027.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus F0309] Length = 216 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 1 MIELSVRNLD-----GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 MI RN+D G+ G + + IF + ++ +V+ Q R G +K R Sbjct: 1 MIMADDRNVDVIDIKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRG 60 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 EVA G K + QKGTG AR S F GGG GP P PKK++ ALR ALS Sbjct: 61 EVAGGGKKPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALS 120 Query: 116 DKFCSNDIMVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAA---RNI 170 D+ ++ I V+ L + TK + A+ + AL++ L+R +L A RN+ Sbjct: 121 DRARADRIHVVTALFEGDKPSTKAALAALSAIVEDRQALVV----LERGNELTALSLRNV 176 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 P +++L +N YD+L +V +++A+E+ Sbjct: 177 PEVHVLWADQLNTYDVLDADDIVFTQAALESF 208 >gi|308233853|ref|ZP_07664590.1| LSU ribosomal protein L4P [Atopobium vaginae DSM 15829] gi|328943561|ref|ZP_08241026.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829] gi|327491530|gb|EGF23304.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829] Length = 208 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N++G+ + +S D+F ++P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIEVKNVEGKSADTLELSSDVFGIEPNIPVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHAL--PKKVRSLALRHALSDKF 118 G K + QKGTGRAR + Q+ GGG FGP P HAL K + LA++ LS K Sbjct: 61 GVKPFRQKGTGRARQGTIRAPQWVGGGVVFGPTP--HSHALRSNNKEKKLAMKSVLSGKL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLP 177 +++V+D ++ TK +AL+L N + + D L+ RN+P + + Sbjct: 119 ADGELIVLDKFAFEKASTKQAAAIIKALELQNKRVTLVVDDDDVETYLSFRNLPKVVIYA 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +N ++ + LV++ + LE+ Sbjct: 179 SSEVNTRILVDNAALVMTVDVAKQLEE 205 >gi|225024791|ref|ZP_03713983.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC 23834] gi|224942498|gb|EEG23707.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC 23834] Length = 206 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G ++ S+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLAASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRTFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L KTK + + L + L + QLD N L++RN+PN+ +L Q Sbjct: 121 ERLFVIEELSVATPKTKAFAEQVKNLGMEQVLFVTN-QLDENVYLSSRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K A+ LE+++ Sbjct: 180 IDPYSLLRYKKVVVTKEAVAQLEEQW 205 >gi|161349383|ref|ZP_02096767.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177'] gi|161830071|ref|YP_001596186.1| 50S ribosomal protein L4 [Coxiella burnetii RSA 331] gi|46577232|sp|Q83ES3|RL4_COXBU RecName: Full=50S ribosomal protein L4 gi|189029499|sp|A9NAM5|RL4_COXBR RecName: Full=50S ribosomal protein L4 gi|161761938|gb|ABX77580.1| ribosomal protein L4 [Coxiella burnetii RSA 331] gi|164601579|gb|EDQ95170.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177'] Length = 205 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ G Sbjct: 1 MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L E KT+ L + L+L N L IIDG DRN LA+RN+ +++ Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD--DRNINLASRNMVGVSVCDALH 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 179 VDPVSLVAAENIVVTVDAVKRLEERL 204 >gi|238025933|ref|YP_002910164.1| 50S ribosomal protein L4 [Burkholderia glumae BGR1] gi|237875127|gb|ACR27460.1| Ribosomal protein L4 [Burkholderia glumae BGR1] Length = 206 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK L +F+A+ L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLSVVEDLTLEAPKTKLLAEKFKAMGLESVLVITDT-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEE 203 >gi|325000491|ref|ZP_08121603.1| 50S ribosomal protein L4 [Pseudonocardia sp. P1] Length = 228 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ +G G + + + +F + ++ +V+ Q R G +K R EV Sbjct: 1 MSTVQIKTPEGAAGGSVELPDHVFDVTANIALMHQVVTAQLNAARQGSHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSVRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLV-----SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ---LAARNIPN 172 + V+ LV S + K L S L++ ++R + L+ RN+P Sbjct: 121 GRVHVVSALVEGDTPSTKAARKTLEVLLPEAGASRVLVV----VERTAETALLSLRNLPQ 176 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIE 200 ++++ +N +D+L +V +++A++ Sbjct: 177 VHMIAPDQLNTHDVLVNDVVVFTQTALD 204 >gi|297613186|ref|NP_001066789.2| Os12g0488600 [Oryza sativa Japonica Group] gi|255670313|dbj|BAF29808.2| Os12g0488600 [Oryza sativa Japonica Group] Length = 346 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + Sbjct: 173 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 232 Query: 123 IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+ Sbjct: 233 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 292 Query: 182 NVYDILRCSKLVL 194 NVY IL+ L L Sbjct: 293 NVYSILQHDTLWL 305 >gi|37912951|gb|AAR05283.1| ribosomal protein L4 [uncultured marine gamma proteobacterium EB000-45B06] gi|40063178|gb|AAR38015.1| ribosomal protein L4/L1 family [uncultured marine bacterium 562] Length = 204 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G SK K RSEV G K + QKGTGRAR + +RGGG F P + KK Sbjct: 42 RQGTSKQKTRSEVRGGGKKPFRQKGTGRARAGTIRSPLWRGGGVTFAATPRDYSKKINKK 101 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + A+R S+ ++ I+ V + KTK +V+ LS LII +LD N Sbjct: 102 MYRAAIRSIFSELLRQGRLVAIEKPVLDKPKTKEIVSLLNEFSLSKVLIIID-ELDMNLY 160 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ RNIPN++++ V+ IN ++L+ +K+ ++ A + +E+ Sbjct: 161 LSTRNIPNVDVITVREINPVNLLKANKVAVTADAFKQIEE 200 >gi|171741272|ref|ZP_02917079.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC 27678] gi|283455367|ref|YP_003359931.1| 50S ribosomal protein L4 [Bifidobacterium dentium Bd1] gi|306823567|ref|ZP_07456942.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium ATCC 27679] gi|309802989|ref|ZP_07697090.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022] gi|171276886|gb|EDT44547.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC 27678] gi|283102001|gb|ADB09107.1| rplD 50S ribosomal protein L4 [Bifidobacterium dentium Bd1] gi|304553274|gb|EFM41186.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium ATCC 27679] gi|308220456|gb|EFO76767.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + +IF ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDKQGKAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D V++ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVAEAPSTKAAIAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|332042719|gb|EGI78919.1| ribosomal protein L4/L1e [Lacinutrix algicola 5H-3-7-4] Length = 209 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V +++G++ G +S D+FA++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVAVLDINGKETGRKADLSSDVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKNLKRLARKSAFSIKANE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ KTK +ALDL N +L + G + N L++RN+ ++ Sbjct: 121 KAIVVLEDFNFDSPKTKNFTNILKALDLQNKKSLFVLGAS-NNNVYLSSRNLKGSEVVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 ++ Y IL +++VL + A+E + Sbjct: 180 SELSTYKILNANQVVLLEGALEGI 203 >gi|187734814|ref|YP_001876926.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835] gi|187424866|gb|ACD04145.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 1/179 (0%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 K Q + ++ +Q+ R R G + SK R+EV+ K++ QKGTG ARH K F GG Sbjct: 23 KGSQAVHDLIVAYQANR-RTGSANSKTRAEVSGNNKKIFRQKGTGNARHGDKRAPIFVGG 81 Query: 87 GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL 146 G FGP P + K R LALR L D ++ + + + KTK + + L Sbjct: 82 GVVFGPRPCDYSKKVNKSTRRLALRRVLGDLIAASKVSTVSEFSVADGKTKSFIKAVKDL 141 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + ++I D AARN+ + L+ +N+ ++ ++L +A+E L R Sbjct: 142 TDAKKVLIVAASFDETTYRAARNVQEVLLMTAAEVNIEQLMNADAVILVDNALETLASR 200 >gi|171913925|ref|ZP_02929395.1| 50S ribosomal protein L4 [Verrucomicrobium spinosum DSM 4136] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 86/162 (53%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G + +K R+EVA +G K++ QKGTGRAR S + GGG +GP P +P+ Sbjct: 39 RRQGNASTKSRNEVAGSGKKLWKQKGTGRARMGSARSPIWSGGGVVWGPKPRDYSKKIPR 98 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 +V++LA R AL+ + D++V + + KTK V L + +++ D Sbjct: 99 QVKTLAFRTALTSRINDGDVLVTADFQVSDGKTKSFVAAIAGLTDARKVLVLADSFDELT 158 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + RN+ N+ L+ +N +L K+++S +A+E + R Sbjct: 159 FRSGRNVQNVQLMAATDVNAEHLLAYDKIIISGAALETIARR 200 >gi|167854922|ref|ZP_02477698.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755] gi|219871731|ref|YP_002476106.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165] gi|254803737|sp|B8F756|RL4_HAEPS RecName: Full=50S ribosomal protein L4 gi|167853989|gb|EDS25227.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755] gi|219691935|gb|ACL33158.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LSVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V+D KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVDKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + + L++ALII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLVQKLKDMALTDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVITV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|164656120|ref|XP_001729188.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966] gi|159103078|gb|EDP41974.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966] Length = 395 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 102/241 (42%), Gaps = 51/241 (21%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S +F P Q + + + R G + +K RS+VAY+G K+ QKGTGRAR S Sbjct: 91 VPMSSHVFNTAPHQHAMHMAVVYYLDALRSGTASTKSRSDVAYSGKKLRPQKGTGRARLS 150 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VSKEC 134 RGGG A GP P LP+KVR LALR ALS +F + V+ +L + Sbjct: 151 DAGNPMLRGGGVAHGPKPRDFKTDLPRKVRELALRSALSARFREGRLHVVPSLDWYAPPM 210 Query: 135 KTKYLVTRFRALDLSNALIIDG--------------------------------CQLDRN 162 T L A +N L + Q R+ Sbjct: 211 STNKLARLLSAKQWTNTLFLTAPRDPVSPVANERGSMRPSSVNLMYTDQQLTRHAQYIRH 270 Query: 163 FQLAARNIPNINL-----LPVQG------------INVYDILRCSKLVLSKSAIEALEDR 205 F LA RN+P+++L LP ++ Y +L ++VL A+E LE++ Sbjct: 271 FALAQRNLPDVDLVRLHELPPHPRPRLEHAKQPGELHAYQVLEFQRIVLDMGALEWLEEK 330 Query: 206 F 206 Sbjct: 331 L 331 >gi|332170560|gb|AEE19815.1| ribosomal protein L4/L1e [Krokinobacter diaphorus 4H-3-7-5] Length = 209 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +S+ +F ++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKIAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKGLKRLARRSALTIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I VI++ KTK V +AL L N +LI+ G + + N L++RN+ ++ Sbjct: 121 NAITVIEDFNLDAPKTKDFVNVLKALGLENKKSLIVLG-ESNNNVYLSSRNLKTAKVVKS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ + +V + ++E +E Sbjct: 180 SELSTYGIMNANNVVFLEGSLEGVE 204 >gi|308235495|ref|ZP_07666232.1| 50S ribosomal protein L4 [Gardnerella vaginalis ATCC 14018] gi|311115166|ref|YP_003986387.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC 14019] gi|310946660|gb|ADP39364.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC 14019] Length = 221 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILA------RVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +LA +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ALS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYALS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKAAVAALTPVTKDQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVITAQYVVFSKEGFEAF 209 >gi|268554728|ref|XP_002635351.1| Hypothetical protein CBG01522 [Caenorhabditis briggsae] gi|187038160|emb|CAP22734.1| hypothetical protein CBG_01522 [Caenorhabditis briggsae AF16] Length = 294 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ ++ E G++ + DIF P+ IL R L WQS + + +K ++E+ G K Sbjct: 50 SLETVEDEKLGLVDLHPDIFRTTPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 109 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP +R L AL+ K +D+ Sbjct: 110 WPQKKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAIRIQGLCVALTLKHAQDDL 169 Query: 124 MVIDNLVS-KECKTKYLVTRFRALDLS-NALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 ++DN+ + + K+ + A + + L ID C ++ A + +P +N++PV G Sbjct: 170 HIVDNIQNLQNGDPKFWIDLCEARNYGYSVLFIDDCDEVSGGLAEAQQALPWLNVMPVYG 229 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N + +++ +VLS++A++ +E+R Sbjct: 230 LNCFSLIKYDTVVLSRNALDRIEERL 255 >gi|119484832|ref|ZP_01619314.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106] gi|119457650|gb|EAW38774.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106] Length = 210 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + VRN +GE G ++ + + I+ R L Q R G + SK R+EV Sbjct: 1 MADCVVRNWEGEQVGQANLELKVAKEENAAHIVHRALVRQMNNARQGSASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSQKMNRKERRLALRTALQSRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 DI+V++ + + KTK LV ++ + +++ + N L+ RNI + + Sbjct: 119 EDIVVVEEFLEQLPRPKTKDLVAAMSRWGIEPESKVLLVLPEKQENVYLSGRNIARMRIC 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +V + +A+E +++ + Sbjct: 179 LADSLNVYDILHADNIVTTAAALEKIQEVY 208 >gi|327402782|ref|YP_004343620.1| 50S ribosomal protein L4P [Fluviicola taffensis DSM 16823] gi|327318290|gb|AEA42782.1| LSU ribosomal protein L4P [Fluviicola taffensis DSM 16823] Length = 208 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 4 LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + V+ +D + K +++S+ IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVIDSKGKATSKKVTLSDTIFGIEPNDHAIYLDVKQHLANRRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S GGG+ FGP P L K++ LA + A + K Sbjct: 61 TRKIKKQKGTGGARAGSVKSGTRVGGGRIFGPRPRNYHFKLNIKLKRLARKSAFAYKAKL 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I+V++++ KT +L+L N L+I G D N L++RN+ + ++ Sbjct: 121 DSILVLEDVALATPKTAEFKAMLSSLNLLNEKVLMIVGSGSD-NVYLSSRNLQRVKVVSA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N YD+L K+VL++S+IE +E Sbjct: 180 DSVNTYDVLNAKKVVLTESSIEVIE 204 >gi|225020387|ref|ZP_03709579.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii ATCC 33806] gi|305679737|ref|ZP_07402547.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266] gi|224946776|gb|EEG27985.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii ATCC 33806] gi|305660357|gb|EFM49854.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ G G + + +IF + +L +V+ Q +R G +K R EV G Sbjct: 4 LTLDVQTAAGSTAGQVELPAEIFDREVSISLLHQVVNAQLAARRQGTHSTKTRGEVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ Sbjct: 64 KKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRNYSQRTPKKMIKAALYGALSDRARHA 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+D LV+ + + F R D L + G D +L+ARN+P + + Sbjct: 124 RIHVVDELVAGQKPSTKSALAFLSRLTDRKKILFVVGRD-DVTSRLSARNLPGVTIRYQD 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 183 QLNTYDVLYSDDVVFSVEALNAF 205 >gi|304384276|ref|ZP_07366687.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM 16973] gi|304334592|gb|EFM00874.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM 16973] Length = 209 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 116/210 (55%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N++G++ G ++++E IFA++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVNVLNINGQETGRKVTLNESIFAIEPNDHVLYLAVKQYLANQRQGTAKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L +KV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYGFKLNRKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173 N I+V+++ + KTK + +++ L +DG +L ++N L+ARN+ Sbjct: 121 NAIIVVEDFDIETPKTKDFI------NITKNLNVDGRKLLLVLPKENKNVYLSARNLQRS 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y IL LV+++++++ ++ Sbjct: 175 EVMSASTLNSYKILNADVLVVTENSLKVID 204 >gi|220913431|ref|YP_002488740.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6] gi|219860309|gb|ACL40651.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6] Length = 206 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKEC 134 S GGG GP P PKK+ + ALR ALSD+ + I V+ +LV +K Sbjct: 67 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVADLVEGTKPS 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA---RNIPNINLLPVQGINVYDILRCSK 191 L T D N L++ ++R +AA RN+ +++L +N YD+L Sbjct: 127 AKTALATLRGVSDRKNLLVV----IERANDVAALSVRNLAGVHVLYADQLNTYDVLVSDD 182 Query: 192 LVLSKSAIEAL 202 +V +K+A EA Sbjct: 183 VVFTKAAYEAF 193 >gi|319778742|ref|YP_004129655.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9] gi|317108766|gb|ADU91512.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9] Length = 206 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ IS S+ IF + + ++ +++ R G K RSEV +T Sbjct: 1 MDLKLINDQGQSSETISASDAIFGREFNEALVHQLVVAYQANARGGNRAQKDRSEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L KK+ + +R S Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKLNKKMYRVGIRSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D KTK R + + L + LII LD N LA RN+P++ ++ + Sbjct: 121 DRIAVVDTFTFDSPKTKQAAARLKDMGLDSVLIITDS-LDENTYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+AI LE+ F Sbjct: 180 ADPLSLVHYKKVLITKAAIAQLEEMF 205 >gi|288917231|ref|ZP_06411600.1| ribosomal protein L4/L1e [Frankia sp. EUN1f] gi|288351422|gb|EFC85630.1| ribosomal protein L4/L1e [Frankia sp. EUN1f] Length = 247 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 7/196 (3%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G D G + + +F + ++ +V+ Q R G +K R EV G K Y QKGT Sbjct: 30 GGDAGSVELPGAVFDVPLNVPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGT 89 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ ++ + V+ +LV Sbjct: 90 GRARQGSLRAPQFTGGGVVHGPKPRNYDQRTPKKMKAAALRGALSDRARNDRVHVVSSLV 149 Query: 131 SKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + + + F+AL D L++ + D L+ RN+ ++LL +N YD+ Sbjct: 150 AGDAPSTKAA--FKALTSLVDARRVLVV-AQRSDEQTWLSLRNVAAVHLLDPGQLNTYDV 206 Query: 187 LRCSKLVLSKSAIEAL 202 L +V ++ A+ A Sbjct: 207 LVSDDVVFTEGALAAF 222 >gi|260909751|ref|ZP_05916445.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295] gi|260636176|gb|EEX54172.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295] Length = 209 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G + +++ IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N I+V+++ KTK V ++ N L ++G +++N L+ARN+ Sbjct: 121 NAIIVVEDFEMAAPKTKEYV------NIVNNLQLEGRKSLLLLPNVNKNVYLSARNLQRS 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y +L LV+++ ++EA++ Sbjct: 175 EVMTASALNAYKVLNADVLVITEKSLEAID 204 >gi|262203623|ref|YP_003274831.1| 50S ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247] gi|262086970|gb|ACY22938.1| ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247] Length = 221 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ DG+ G + + ++F ++ +V+ Q R G +K R +V G Sbjct: 9 LTLDVKTADGKTNGTVDLPAELFDAPANIALMHQVVVAQQAAARQGTHATKTRGDVRGGG 68 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 69 AKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 128 Query: 122 DIMVIDNLVSKECKTKYLVTRF-RAL-DLSNALIIDGCQLDRNFQLAARNIPNI-NLLPV 178 I VI LVS + + +F +L D L++ L R A +++ N+ N+LP+ Sbjct: 129 RIHVITELVSGQVPSTKSARQFLESLSDRRKFLVV----LGREDLTAWKSVANLGNVLPI 184 Query: 179 --QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L ++V S + A Sbjct: 185 APDQLNTYDVLYSDEVVFSVETLNAF 210 >gi|209165347|gb|ACI41235.1| ribosomal protein L4 [Mycobacterium massiliense] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 94/194 (48%), Gaps = 6/194 (3%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G I + ++F +L +V+ Q R G +K R V+ G K Y QKGT Sbjct: 1 GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+ + ALR ALSD+ + I + LV Sbjct: 61 GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120 Query: 131 SKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + + + F A D L++ G D + RN+PN+++L +N YD+L+ Sbjct: 121 AGQEPSTKSAKSFLAEITDRKQLLVVLGRD-DLASVKSVRNLPNVHVLAYDQLNTYDVLK 179 Query: 189 CSKLVLSKSAIEAL 202 +V S +EAL Sbjct: 180 ADDVVFS---VEAL 190 >gi|167587771|ref|ZP_02380159.1| ribosomal protein L4/L1e [Burkholderia ubonensis Bu] Length = 206 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLESVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|156973052|ref|YP_001443959.1| 50S ribosomal protein L4 [Vibrio harveyi ATCC BAA-1116] gi|166199924|sp|A7MWI4|RL4_VIBHB RecName: Full=50S ribosomal protein L4 gi|156524646|gb|ABU69732.1| hypothetical protein VIBHAR_00731 [Vibrio harveyi ATCC BAA-1116] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKSQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEE 197 >gi|261338278|ref|ZP_05966162.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum DSM 20093] gi|270276933|gb|EFA22787.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum DSM 20093] Length = 220 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ-----GILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G I ++F ++ ++ +V+ Q +R G +K R Sbjct: 4 VTLNVTDNQGNATGTIEAPAEVFGFTAEEVHAHVPLIHQVVNAQLAARRQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D ++ E TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANNGRVAVVDFGIT-EPSTKKALAALNPITENKFTTVVLSRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK EA Sbjct: 183 FADQLNTYDVVTAQYVVFSKEGYEAF 208 >gi|318607743|emb|CBY29241.1| LSU ribosomal protein L4p (L1e) [Yersinia enterocolitica subsp. palearctica Y11] Length = 201 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|71736691|ref|YP_276705.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|109893620|sp|Q48D37|RL4_PSE14 RecName: Full=50S ribosomal protein L4 gi|71557244|gb|AAZ36455.1| ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322321|gb|EFW78415.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. B076] gi|320331979|gb|EFW87915.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330879370|gb|EGH13519.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. race 4] Length = 200 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 L+ D I VSE F + + ++ + + R G + K RS+V G + + Q Sbjct: 2 QLNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGGKRPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGG F P L KK+ ALR L++ ++ ++V+ Sbjct: 62 KGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTDRLVVVQ 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + + KTK L+++ + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 122 DFAVEAPKTKDLLSKLTGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 181 AYDKVLITVSAVKKFEE 197 >gi|226365596|ref|YP_002783379.1| 50S ribosomal protein L4 [Rhodococcus opacus B4] gi|226244086|dbj|BAH54434.1| 50S ribosomal protein L4 [Rhodococcus opacus B4] Length = 229 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ G+ G + + +IF +L +V+ Q R G +K R EV G Sbjct: 11 LTLDVKVAGGKTNGTVELPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGG 70 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 71 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 130 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV+ + + F D L++ G + D + +N+ ++ + Sbjct: 131 RIHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVG-RADIAAWKSVQNLEGVHPIAPD 189 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 190 QLNTYDVLNSDDVVFSVEALNAF 212 >gi|302697703|ref|XP_003038530.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8] gi|300112227|gb|EFJ03628.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8] Length = 251 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R+EV + K+ QKGTG AR RGGG FGP P LP+K Sbjct: 46 RQGSANTKNRAEVRGSTRKIMRQKGTGNARVGDAQSPIRRGGGVVFGPKPRDFSTKLPRK 105 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNF 163 V + +R ALS K + ++ L E KT+ L R L L L + G QL Sbjct: 106 VIEMGMRVALSAKVKEQNFGIMRRLEWPEGKTRTLAERIETLGLRKTLFVTGSEQLPETL 165 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + A RNIP + L+ +NVY+ L+ ++V A++ E+ K Sbjct: 166 ERAFRNIPMVKLVHASELNVYETLKWPRIVADLDAVKYFEESLK 209 >gi|240980762|ref|XP_002403536.1| ribosomal protein L4, putative [Ixodes scapularis] gi|215491369|gb|EEC01010.1| ribosomal protein L4, putative [Ixodes scapularis] Length = 295 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 17/211 (8%) Query: 3 ELSVRNLD---GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E V NLD E G++ + IFA P+ L + WQ +R+ + ++ R+E Sbjct: 73 EAWVENLDTVESEKLGLVPLHPKIFAGFPRIDTLHWNIHWQKNYQRVDWATAQTRAERRG 132 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S Q++GGG + GP P + LP R L ALS KF Sbjct: 133 GGRKPWPQKGTGRARHGSIRAPQWKGGGVSMGPRGPRTYFYMLPFFRRVEGLITALSVKF 192 Query: 119 CSNDIMVIDNLVSKEC---KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 M+ L + +++ FR+ D + +N +A I ++N+ Sbjct: 193 AQVTEMLCTFLCTSRATSHSSRFGWHCFRSTDY----------VPKNIAVACDQIKHMNI 242 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +PV G+NV+ +L+ LVL+ SA E +E + Sbjct: 243 MPVYGLNVHSMLKYDTLVLTLSAAEEIEAKL 273 >gi|291280147|ref|YP_003496982.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1] gi|290754849|dbj|BAI81226.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1] Length = 209 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 9 LDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 L+ E+K V +++ + I + + ++ V+ Q +R G +K R EV G K + Sbjct: 7 LNQENKKVKEVNLDDSIISYPVKPWLMHEVVVMQLACRRAGTHSTKTRGEVRGGGRKPWR 66 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR S + GGG FGP P + +PKK AL+ AL K N + +I Sbjct: 67 QKGTGRARAGSIRSPLWVGGGTIFGPKPRDYSYKMPKKKVKNALKSALRAKLEDNALKII 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++L + KTK V + + +++ +LD A RNIP + LL V+G+NVYD+ Sbjct: 127 ESLNVENGKTKEAVAILKNFGANRKVLVVYNELDEKVIRAFRNIPYVKLLNVKGLNVYDL 186 Query: 187 LRCSKLVL 194 + +++ Sbjct: 187 INARTILM 194 >gi|227497182|ref|ZP_03927430.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434] gi|226833313|gb|EEH65696.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434] Length = 214 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 2/193 (1%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + +IF ++ ++ +V+ Q R G +K R V G K Y QKGT Sbjct: 14 GKKTGSAELPAEIFDVETNIPLMHQVVVAQLAAARQGTHATKTRGAVRGGGRKPYRQKGT 73 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + I VI V Sbjct: 74 GRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGRIHVITEFV 133 Query: 131 SKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + E TK + R + AL++ + D L+ RN P ++ +N YD+L Sbjct: 134 TSEKPSTKSALGALRNITDRKALVV-ATRADELTALSLRNAPEALVIWADQLNTYDVLVN 192 Query: 190 SKLVLSKSAIEAL 202 +V + +A+++ Sbjct: 193 DDVVFTAAALDSF 205 >gi|112791755|gb|ABI22153.1| ribosomal protein L4 [Flavobacterium hibernum] Length = 209 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V + +G+D G + +S+ +FA++P + ++ +R G K+K R+EV + Sbjct: 1 MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGTIFGPRQRSYSFKLNKSLKRLARKSAFSIKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++I+V+++ + TK + +AL L N +L + G + ++N L++RN+ N++ Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLG-ESNKNVYLSSRNLKASNVVTS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 ++ Y IL + LVL + ++E +E+ Sbjct: 180 SELSTYAILNTNNLVLLEGSLELIEE 205 >gi|257069507|ref|YP_003155762.1| 50S ribosomal protein L4 [Brachybacterium faecium DSM 4810] gi|256560325|gb|ACU86172.1| LSU ribosomal protein L4P [Brachybacterium faecium DSM 4810] Length = 312 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 7/202 (3%) Query: 4 LSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L+V LD G+ G + + IF ++ ++ +V+ Q R G K+K R+EV G Sbjct: 5 LTVDVLDPAGKKSGSVELPASIFDVQTNVPLIHQVVVAQQAAARQGTHKAKTRAEVRGGG 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 65 KKPWKQKGTGRARQGSLRAPQFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARNG 124 Query: 122 DIMVIDNLVSKECKTKYLV--TRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPV 178 + V+ +L+ + + V T D + L++ + D + L++RN+P ++L Sbjct: 125 RVHVVSSLLEGDVASTKAVRQTLSNVSDRRHLLVV--VRRDDDLGALSSRNLPTTHVLYA 182 Query: 179 QGINVYDILRCSKLVLSKSAIE 200 +N YD++ +V + A+E Sbjct: 183 DQVNTYDVMLSDDVVFTAGALE 204 >gi|288929339|ref|ZP_06423184.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329441|gb|EFC68027.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 209 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G + +++ IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I+V+++ KTK V + L L +L++ +++N L+ARN+ ++ Sbjct: 121 NAIIVVEDFEMAAPKTKEYVNIVKNLQLGERKSLLLL-PNVNKNVYLSARNLQRSEVMTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N Y +L LV+++ ++EA++ Sbjct: 180 SALNAYKVLNADVLVITEKSLEAID 204 >gi|301168457|emb|CBW28047.1| 50S ribosomal protein L4 [Bacteriovorax marinus SJ] Length = 205 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 8/209 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N E G +S + + + ++ +V++ +R G + +K R +V+ Sbjct: 1 MTDITVLNGKFETSGKLSTNVSLTSEDINVPVVHQVVKATLAGRRQGNACTKTRGQVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S S GGG FGP P L KKV + A++ L+DK + Sbjct: 61 GAKPFKQKGTGRARQGSTRASIMVGGGTTFGPKPRSYDQKLNKKVAAKAIQSVLADKLQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL---LP 177 + V+D+ S KTK L T + L AL++ ++ LA R N+ L Sbjct: 121 GKLTVVDSFDS-NGKTKELYTTLNSKGLLPALVV----AEKKDSLAIRAAKNLQYGKGLA 175 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V+G +VY+ ++ LV+ K+A+EAL R Sbjct: 176 VEGFSVYEAVKYENLVIEKAALEALLGRL 204 >gi|209165345|gb|ACI41234.1| ribosomal protein L4 [Mycobacterium bolletii] gi|209165349|gb|ACI41236.1| ribosomal protein L4 [Mycobacterium abscessus] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 1/193 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G I + ++F +L +V+ Q R G +K R V+ G K Y QKGT Sbjct: 1 GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+ + ALR ALSD+ + I + LV Sbjct: 61 GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120 Query: 131 S-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + +E TK + + L++ + D + RN+PN+++L +N YD+L+ Sbjct: 121 AGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTYDVLKA 180 Query: 190 SKLVLSKSAIEAL 202 +V S A+ Sbjct: 181 DDVVFSVEALNGF 193 >gi|260772097|ref|ZP_05881014.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14] gi|260612964|gb|EEX38166.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14] Length = 200 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V+DN + KT Sbjct: 71 TIRSPIWRTGGVTFAAKPQDHSVKVNKKMYRGAMKSILSELVRQERLIVVDNFSVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + L+L++ LI+ G ++D N LAARN+ +++ V GI+ ++ K++++ Sbjct: 131 KELAAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTA 189 Query: 197 SAIEALED 204 +A++ +E+ Sbjct: 190 AAVKQVEE 197 >gi|238754176|ref|ZP_04615534.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473] gi|238763729|ref|ZP_04624688.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638] gi|238698031|gb|EEP90789.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638] gi|238707672|gb|EEQ00032.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473] Length = 201 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|254429193|ref|ZP_05042900.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881] gi|196195362|gb|EDX90321.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881] Length = 200 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 104/197 (52%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K RS+V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F VP + +K+ AL+ +S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + + + ++LS+ LI+ +D N LA+RN+P +++ QG++ ++ Sbjct: 122 EFTVDSPKTKTVAAKLKDMELSSVLIVTD-DVDENLFLASRNLPKVDVRDSQGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ LE+ Sbjct: 181 AFEKVLITVPALKKLEE 197 >gi|209165351|gb|ACI41237.1| ribosomal protein L4 [Mycobacterium chelonae] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 3/190 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G I + ++F +L +V+ Q R G +K R V+ G K Y QKGTGRAR Sbjct: 5 GSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGTGRAR 64 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S QF GGG GP P PKK+ + ALR ALSD+ + I I LV+ + Sbjct: 65 QGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVAGQE 124 Query: 135 KTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + F A D L++ G + D + RN+PN+++L +N YD+L+ + Sbjct: 125 PSTKSAKSFLAEISDRKQVLVVLG-RDDLTSVKSVRNLPNVHVLAYDQLNTYDVLKADDV 183 Query: 193 VLSKSAIEAL 202 V S A+ Sbjct: 184 VFSVEALNGF 193 >gi|146281171|ref|YP_001171324.1| 50S ribosomal protein L4 [Pseudomonas stutzeri A1501] gi|166199849|sp|A4VHN1|RL4_PSEU5 RecName: Full=50S ribosomal protein L4 gi|145569376|gb|ABP78482.1| ribosomal protein L4 [Pseudomonas stutzeri A1501] Length = 200 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + K RS+V+ G + + QKGTGRAR + +RGGG F P L KK Sbjct: 39 RQGSKQQKTRSDVSGGGKRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKK 98 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + ALR L++ S ++V+++ KTK L ++ + LS+ LI+ +D+N Sbjct: 99 MYRAALRSILAELVRSERLVVVEDFAVDAPKTKALASKLNGMGLSDVLIVSDA-VDQNLY 157 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 LAARN+P++++ VQG + ++ K++++ SA++ E+ Sbjct: 158 LAARNLPHVDVRDVQGSDPVSLIAYDKVLITVSAVKKFEE 197 >gi|227549827|ref|ZP_03979876.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM 44291] gi|227078082|gb|EEI16045.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM 44291] Length = 221 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V DG+ G + + ++F + ++ +V+ Q R G +K R V G Sbjct: 4 LTLDVHTADGKTNGSVDLPAELFDREASIPLMHQVVVAQQAAARQGTHATKTRGMVRGGG 63 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP P PKK+ AL AL+D+ + Sbjct: 64 KKPFRQKGTGRARQGSIRAPHYTGGGIVHGPQPRSYAQRTPKKMIKAALAGALTDRARGS 123 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I +++ LV + + F R D + L++ G + D N +L+ARN+P +++L Sbjct: 124 RIHIVEELVPGQTPSTKSARAFIERLTDRKSVLLVIGRE-DVNSRLSARNLPGVHILEPS 182 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ Sbjct: 183 QLNTYDVLNADDVVFSVEALHTF 205 >gi|28867855|ref|NP_790474.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato str. DC3000] gi|66047774|ref|YP_237615.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae B728a] gi|213969215|ref|ZP_03397353.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1] gi|237797433|ref|ZP_04585894.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6] gi|257483186|ref|ZP_05637227.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623848|ref|ZP_06456802.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648941|ref|ZP_06480284.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. 2250] gi|289675489|ref|ZP_06496379.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae FF5] gi|298489096|ref|ZP_07007118.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381722|ref|ZP_07230140.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato Max13] gi|302061078|ref|ZP_07252619.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato K40] gi|302130781|ref|ZP_07256771.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189278|ref|ZP_07265951.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae 642] gi|46577242|sp|Q889X0|RL4_PSESM RecName: Full=50S ribosomal protein L4 gi|75500414|sp|Q4ZMP5|RL4_PSEU2 RecName: Full=50S ribosomal protein L4 gi|28851091|gb|AAO54169.1| ribosomal protein L4 [Pseudomonas syringae pv. tomato str. DC3000] gi|63258481|gb|AAY39577.1| Ribosomal protein L4/L1e [Pseudomonas syringae pv. syringae B728a] gi|213925893|gb|EEB59450.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1] gi|298156408|gb|EFH97506.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869430|gb|EGH04139.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879441|gb|EGH13590.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330891930|gb|EGH24591.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. mori str. 301020] gi|330940886|gb|EGH43843.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. pisi str. 1704B] gi|330953196|gb|EGH53456.1| 50S ribosomal protein L4 [Pseudomonas syringae Cit 7] gi|330962524|gb|EGH62784.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966910|gb|EGH67170.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. actinidiae str. M302091] gi|330969820|gb|EGH69886.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330976641|gb|EGH76685.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330988281|gb|EGH86384.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012414|gb|EGH92470.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331018161|gb|EGH98217.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331020283|gb|EGI00340.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 200 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 104/197 (52%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 L+ D I VSE F + + ++ + + R G + K RS+V G + + Q Sbjct: 2 QLNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGGKRPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGG F P L KK+ ALR L++ ++ ++V+ Sbjct: 62 KGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTDRLVVVQ 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 122 DFAVEAPKTKDLLNKLTGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 181 AYDKVLITVSAVKKFEE 197 >gi|313204918|ref|YP_004043575.1| LSU ribosomal protein l4p [Paludibacter propionicigenes WB4] gi|312444234|gb|ADQ80590.1| LSU ribosomal protein L4P [Paludibacter propionicigenes WB4] Length = 209 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N GED G V+S+++ IF ++P + ++ +R G SKGRS+++ + Sbjct: 1 MEVKVVNTKGEDTGRVVSLNDTIFGIEPNDHAIYLDVKQYLANQRQGTHSSKGRSQLSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR GGG+ FGP P L KKV+ LA + ALS K + Sbjct: 61 TRKLGKQKGGGGARPGDIKSGVRVGGGRMFGPTPRDYSFKLNKKVKQLARKSALSYKALN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V++N + KTK V+ ++L +++ +I ++N L+ARN+ + ++ V Sbjct: 121 NLITVVENFNFEAPKTKDFVSMTKSLQVADKKPLIVLANANKNVYLSARNLASSKVITVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y +L LVL++ A+ A+E FK Sbjct: 181 ELSTYVVLNAKSLVLTEDAVVAVEQIFK 208 >gi|238021592|ref|ZP_04602018.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147] gi|237866206|gb|EEP67248.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147] Length = 206 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLIDAKGQVSGSVAASDALFAREYNEALVHQLVVAFLANARSGNRAQKTRAEVNHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L + KTK + + L + L + QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIESLSAATPKTKEFAEQVKNLGMEQVLFVTK-QLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K A+ LE+++ Sbjct: 180 IDPYSLLRYKKVVITKEAVAQLEEQW 205 >gi|145219062|ref|YP_001129771.1| 50S ribosomal protein L4 [Prosthecochloris vibrioformis DSM 265] gi|189042879|sp|A4SCR0|RL4_PROVI RecName: Full=50S ribosomal protein L4 gi|145205226|gb|ABP36269.1| LSU ribosomal protein L4P [Chlorobium phaeovibrioides DSM 265] Length = 208 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V G + G V+++ +DIF + + + ++ +R G KSK R+EV Sbjct: 1 MELKVLTTAGTESGEVVTLRDDIFGAEVSEHAVYLDVKSILANRRQGTHKSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV++LA R A S K Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMVGGGTIFGPTPHGYDQKVNKKVKALARRSAFSSKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ E KTK + LD L++ + + + +NI +N++ Sbjct: 121 GRILVVEDFKLDEIKTKPFAAILKNLGLDEKKTLMLT-PEYNVIITRSGKNIQTVNIMSA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + + YDIL ++ K+A++ +E+ Sbjct: 180 EKASTYDILNSHTVLFQKAALKKIEE 205 >gi|89891147|ref|ZP_01202655.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7] gi|89516791|gb|EAS19450.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7] Length = 209 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++SV ++ G++ G + +S+ IFA++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVSVIDIKGKETGRQVELSDSIFAIEPNDHAIYLDVKQYLANQRQGTHKAKQRAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGPVP L K + LA + LS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPVPRDYSFKLNKGQKRLARKSVLSQKMAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++ ++++ KTK + ++L L N +L + G + N L++RN ++ Sbjct: 121 GNLHIVEDFNFDAPKTKNFIEVLKSLGLDNKKSLFVLGGS-NNNVYLSSRNFKGSEVVTN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 ++ Y IL + +V+ + ++E +E+ Sbjct: 180 SELSTYKILHANSVVVLEGSLEGIEE 205 >gi|253998015|ref|YP_003050078.1| 50S ribosomal protein L4/L1e [Methylovorus sp. SIP3-4] gi|253984694|gb|ACT49551.1| ribosomal protein L4/L1e [Methylovorus sp. SIP3-4] Length = 208 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL + + +G+ K + VSE F + + ++ +V+ R GR V++T Sbjct: 1 MELKLIDKNGKPAKSGVEVSEVTFGREFNEALVHQVVVAYQANARTATRAQLGRGTVSHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR S +RGGG+AF P H + +KV +R LS+ Sbjct: 61 THKPWNQKGTGRARSGMSSSPIWRGGGRAFPNSPDENFSHKVNRKVYRAGMRSILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + VI+ V + KTK LV + + L +++ D N L+ARN+PN+ ++ Q Sbjct: 121 QDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARNLPNVLVVEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + ++R +V +K+A++ LE+ Sbjct: 181 YADPVSLVRFPNVVATKAAVKKLEE 205 >gi|313158262|gb|EFR57664.1| 50S ribosomal protein L4 [Alistipes sp. HGB5] Length = 208 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + +S+ +F ++ + ++ +R G KSK R+EVA + Sbjct: 1 MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KK++ LA R AL+ K + Sbjct: 61 TRKLKRQKGTGGARCGSIKSPLFPGGGRIFGPQPRDYSFKLNKKLKQLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ L KTK +V AL +++ +++ + + N QL+ RN+P + + Q Sbjct: 121 GAISVVETLSLDAPKTKAVVALADALKVADKKVLLVLPESNANLQLSCRNLPYVQPVLAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 + YD++ S +V+ + A L Sbjct: 181 NVCTYDVMNASAIVMVEGAENVL 203 >gi|116671520|ref|YP_832453.1| 50S ribosomal protein L4P [Arthrobacter sp. FB24] gi|116611629|gb|ABK04353.1| LSU ribosomal protein L4P [Arthrobacter sp. FB24] Length = 205 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKEC 134 S GGG GP P PKK+ + ALR ALSD+ + I V+ LV +K Sbjct: 67 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVAGTKPS 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA---RNIPNINLLPVQGINVYDILRCSK 191 + L T + N L++ ++R +AA RN+ ++++L +N YD+L Sbjct: 127 AKEALATLRGVSERKNLLVV----IERANDVAALSVRNLADVHVLYADQLNTYDVLVSDD 182 Query: 192 LVLSKSAIEAL 202 +V +K+A EA Sbjct: 183 VVFTKAAYEAF 193 >gi|212550450|ref|YP_002308767.1| 50S ribosomal protein L4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226730614|sp|B6YQ84|RL4_AZOPC RecName: Full=50S ribosomal protein L4 gi|212548688|dbj|BAG83356.1| 50S ribosomal protein L4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 208 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+++ N+ GE+ G + ED +F ++P I+ +R KR G +KSK RSE++ + Sbjct: 1 MEVNIFNIKGEETGRKVILEDSVFRVEPNDYIVYLDVRRYLANKRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK + +A R LS + Sbjct: 61 TRKLGRQKGSGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKEKKMARRSVLSCRMRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLP 177 ++V+++ + KTK + + L + A L++ + D N L+ARNI + + Sbjct: 121 GGVIVVEDFSFETPKTKEFLDLAKNLKIQIANSKLLVILPEKDDNIFLSARNISKVKVTT 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 V +N Y+IL ++LV+ +S++ A+ + Sbjct: 181 VSNLNTYEILDVNRLVILESSVVAINN 207 >gi|330812074|ref|YP_004356536.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380182|gb|AEA71532.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 200 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+V+ G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ A+R L++ ++ ++V+ + Sbjct: 63 GTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVEAPKTKDLLNKLNGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YDKVLITVSAVKKFEE 197 >gi|297625783|ref|YP_003687546.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921548|emb|CBL56102.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 233 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 1/199 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N +G+ G + + ++F + ++ +V+ Q R G +K R+EV+ G K Sbjct: 7 IDVVNAEGKKAGSVELPGELFDAQANVPLMHQVVTAQLAAARQGTHSTKTRAEVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG + GP P PKK+ + ALR ALSD+ I Sbjct: 67 PWRQKGTGRARQGSIRSPQWAGGGISHGPQPREYSQRTPKKMVATALRGALSDRAREGRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ V + TK L +++ + D N L+ RN+ ++++ +N Sbjct: 127 HVVSEFVGGDKPSTKSAAKVIAGLGDYGRVLVVLERSDENNWLSMRNLIGVHVVSWDQLN 186 Query: 183 VYDILRCSKLVLSKSAIEA 201 YD+L +V S+SAI+A Sbjct: 187 TYDVLLADAIVFSESAIKA 205 >gi|114319620|ref|YP_741303.1| 50S ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1] gi|122312455|sp|Q0ABH4|RL4_ALHEH RecName: Full=50S ribosomal protein L4 gi|114226014|gb|ABI55813.1| LSU ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1] Length = 205 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +RN G+ G + V++ F + ++ ++ +V+ R G K R+EV G Sbjct: 1 MELQLRNAQGQTDGSVQVADAAFGDRFREALIHQVVVAYLAGARAGTRAQKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + + GGG+AF P + KK+ ALR S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIWVGGGRAFAARPQDHGQKVNKKMYRGALRSIFSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++++ E KT L + L + LI+ ++D+N LAARN+P +++ V G+ Sbjct: 121 RLVVVESIGVDEPKTAKLAAQLEQLGVERPLIV-ADEVDQNLYLAARNLPGVDVRDVPGL 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ ++V++ A+ +E+ Sbjct: 180 DPVALVGAEQVVITVQALRQVEE 202 >gi|87122972|ref|ZP_01078833.1| 50S ribosomal protein L4 [Marinomonas sp. MED121] gi|86161740|gb|EAQ63044.1| 50S ribosomal protein L4 [Marinomonas sp. MED121] Length = 201 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G + G + VSE FA + + ++ +V+ R G K RS+VA G K + Q Sbjct: 4 NLTGTE-GTLEVSEVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSDVAGGGRKPWKQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +R GG F P + KK+ A+R S+ + ++V++ Sbjct: 63 KGSGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVVE 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L + KTK + L++ NALI+ +LD N LAARNIPN+++ I+ ++ Sbjct: 123 ELSLEAPKTKLFKAKMAELNIENALIVS-AELDENLFLAARNIPNVDVRDAASIDPVSLI 181 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ +E+ Sbjct: 182 AYDKVLVTVGALKQVEE 198 >gi|313616904|gb|EFR89557.1| ribosomal protein L4/L1 family [Listeria innocua FSL S4-378] Length = 131 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 73/126 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIXSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVI 126 ++V+ Sbjct: 121 EKLVVL 126 >gi|238758765|ref|ZP_04619939.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236] gi|238792939|ref|ZP_04636569.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909] gi|238703062|gb|EEP95605.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236] gi|238727793|gb|EEQ19317.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909] Length = 201 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|309799059|ref|ZP_07693312.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302] gi|308117294|gb|EFO54717.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302] Length = 149 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 77/139 (55%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 V+KGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K N + Sbjct: 8 VKKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVA 67 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 +D+L KT AL + + +++ + + L+ARN+PN+ + +V D Sbjct: 68 VDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATTASVLD 127 Query: 186 ILRCSKLVLSKSAIEALED 204 I KL+++++AI +E+ Sbjct: 128 IANSDKLLVTQAAISKIEE 146 >gi|238752686|ref|ZP_04614157.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380] gi|238783170|ref|ZP_04627196.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970] gi|238709113|gb|EEQ01360.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380] gi|238715966|gb|EEQ07952.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970] Length = 201 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|261880881|ref|ZP_06007308.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361] gi|270332388|gb|EFA43174.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361] Length = 209 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 117/211 (55%), Gaps = 14/211 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++ IF ++P ++ ++ +R G +K+K RSE A + Sbjct: 1 MEVSVLNINGQETGRKATLNDAIFGIEPNDHVIYLDVKHYLAAQRQGTAKTKERSERAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLIRQKGSGGARRGDINSPVLVGGGRVFGPQPHDYSFKLNKKVKALARKSALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N I++++++ + KTK V +++ L +DG ++++N L+ARNI Sbjct: 121 NAIIIVEDIDIEAPKTKDFV------NITKNLKVDGKKTLVVLPEVNKNVYLSARNIQKA 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ IN Y +L LV+++ +++ ++D Sbjct: 175 EVMTANAINTYKVLNADVLVITEGSLKTIDD 205 >gi|313606523|gb|EFR83351.1| ribosomal protein L4/L1 family [Listeria monocytogenes FSL F2-208] Length = 131 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 75/131 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVS 131 ++ +L++ Sbjct: 121 EKLVXXTHLIN 131 >gi|226305342|ref|YP_002765300.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4] gi|229489366|ref|ZP_04383229.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis SK121] gi|226184457|dbj|BAH32561.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4] gi|229323463|gb|EEN89221.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis SK121] Length = 224 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ G+ G + + +IF +L +V+ Q R G +K R +V G Sbjct: 8 LTLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHSTKTRGDVRGGG 67 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 127 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV+ + + F D L++ G Q D + +N+ ++ + Sbjct: 128 RIHVITELVAGQTPSTKGAIAFLGEISDRKKLLLVVGRQ-DVAAWKSVQNLEGVHPIAPD 186 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ A Sbjct: 187 QLNTYDVLNADDVVFSVEALNAF 209 >gi|325856055|ref|ZP_08171944.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A] gi|327313191|ref|YP_004328628.1| 50S ribosomal protein L4 [Prevotella denticola F0289] gi|325483727|gb|EGC86691.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A] gi|326946137|gb|AEA22022.1| 50S ribosomal protein L4 [Prevotella denticola F0289] Length = 209 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALTYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173 N I+V+++ KTK V +++ L +DG +L ++N L+ARN+ Sbjct: 121 NAIVVVEDFNLDAPKTKDFV------NIAKNLKVDGKKLLLVLPEVEKNVYLSARNLQKT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y +L LV+++++++ ++ Sbjct: 175 EVMTAAQVNSYKVLNADVLVVTENSLKVID 204 >gi|86141141|ref|ZP_01059687.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217] gi|85831700|gb|EAQ50155.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217] Length = 209 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++S+ +FA++P + ++ KR G KSK R+E+A + Sbjct: 1 MKVAVVDIKGKETGREANLSDSVFAIEPNDHAIYLDVKQHLANKRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTLKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I V+++ + KTK V AL L N +L + G + N L++RN+ ++ Sbjct: 121 KAITVVEDFNFETPKTKNFVDVVTALGLDNKKSLFVLGAS-NNNVYLSSRNLKTSEVITS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ + +V + ++E +E Sbjct: 180 SELSTYKIMNANNVVFLEGSLEEIE 204 >gi|88803749|ref|ZP_01119273.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P] gi|88780482|gb|EAR11663.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P] Length = 209 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 113/204 (55%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S+D+F ++P + ++ +R G KSK R+E++ + Sbjct: 1 MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRDYSFKLNKSLKRLARKSALSIQAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++VI++ + KTK + ++L+L +L + + + N L++RN+ ++ Sbjct: 121 ENVIVIEDFNFETPKTKNFLDVLKSLELDTRKSLFVLSNE-NANVYLSSRNLKKSKVIKA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + Y +L +KLV+++ ++E + Sbjct: 180 SELYTYGVLNTNKLVITEGSLEEI 203 >gi|304373189|ref|YP_003856398.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1] gi|304309380|gb|ADM21860.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1] gi|330723951|gb|AEC46321.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis MCLD] Length = 295 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 9/182 (4%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 Q I +L ++ +R K K R+EV+ TG K + QKGTG+AR S F GGG+A Sbjct: 119 QAIFDTIL-YERGSRRNPTHKVKSRAEVSGTGKKPWKQKGTGKARAGSLRSPIFVGGGRA 177 Query: 90 FGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL-- 146 FGP L KKVR LA ALS +N ++V D KE TK LV + + Sbjct: 178 FGPTNNKNYKIKLNKKVRKLAFASALSQLAQNNQVLVSD-FAQKEISTKTLVKKLASEKL 236 Query: 147 -DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 +L N LII L+ARN+ N+ + I V D+++ ++S+S I+ LE R Sbjct: 237 NELKNVLIISSSS---ELFLSARNLQNVKVTKWSSILVEDLVKADVFIISESDIKNLEGR 293 Query: 206 FK 207 FK Sbjct: 294 FK 295 >gi|304399290|ref|ZP_07381156.1| ribosomal protein L4/L1e [Pantoea sp. aB] gi|308188356|ref|YP_003932487.1| 50S ribosomal protein L4 [Pantoea vagans C9-1] gi|304353216|gb|EFM17597.1| ribosomal protein L4/L1e [Pantoea sp. aB] gi|308058866|gb|ADO11038.1| 50S ribosomal protein L4 [Pantoea vagans C9-1] Length = 201 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V+++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVESFAVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDASGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|296130494|ref|YP_003637744.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109] gi|296022309|gb|ADG75545.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109] Length = 228 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 3/202 (1%) Query: 4 LSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L+V LD G+ G + D+F + ++ +V+ Q R G +K R EV G Sbjct: 5 LTVDVLDEKGKKAGTADLPGDVFDVTTNVPLIHQVVVAQLAAVRQGTHDTKTRGEVRGGG 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 65 KKPYKQKGTGRARQGSTRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARAG 124 Query: 122 DIMVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ E TK + L +++ + D + RN+ ++LL Sbjct: 125 RVHVVTGFAPGEVPSTKAALAVLDNLSGRKNVLVVVERQDEITWKSLRNVERVHLLVADQ 184 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V ++ A++A Sbjct: 185 LNTYDVLISDDVVFTQGALDAF 206 >gi|110833259|ref|YP_692118.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2] gi|123050733|sp|Q0VSK2|RL4_ALCBS RecName: Full=50S ribosomal protein L4 gi|110646370|emb|CAL15846.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2] Length = 200 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 104/197 (52%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K RS+V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F VP + +K+ AL+ +S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + + + ++L++ LI+ +D N +A+RN+P +++ QG++ ++ Sbjct: 122 EFTVDSPKTKAVAAKLKGMELTSVLIVTD-NVDENLFMASRNLPKVDVRDSQGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ LE+ Sbjct: 181 AFEKVLITVPALKKLEE 197 >gi|161523430|ref|YP_001578442.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|189351797|ref|YP_001947425.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|221201566|ref|ZP_03574604.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M] gi|221207359|ref|ZP_03580369.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2] gi|221213497|ref|ZP_03586472.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1] gi|254253516|ref|ZP_04946834.1| Ribosomal protein L4 [Burkholderia dolosa AUO158] gi|226730630|sp|A9ADJ4|RL4_BURM1 RecName: Full=50S ribosomal protein L4 gi|124896125|gb|EAY70005.1| Ribosomal protein L4 [Burkholderia dolosa AUO158] gi|160340859|gb|ABX13945.1| ribosomal protein L4/L1e [Burkholderia multivorans ATCC 17616] gi|189335819|dbj|BAG44889.1| large subunit ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|221166949|gb|EED99420.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1] gi|221172947|gb|EEE05384.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2] gi|221178382|gb|EEE10791.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M] Length = 206 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|167564416|ref|ZP_02357332.1| 50S ribosomal protein L4 [Burkholderia oklahomensis EO147] gi|167571562|ref|ZP_02364436.1| 50S ribosomal protein L4 [Burkholderia oklahomensis C6786] gi|167838211|ref|ZP_02465070.1| 50S ribosomal protein L4 [Burkholderia thailandensis MSMB43] Length = 206 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLESVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|67923584|ref|ZP_00517056.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501] gi|67854554|gb|EAM49841.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501] Length = 210 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGEEVGQATLELKVAKEESASHLLHRAVVRHLANARQGNASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A++ + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSKKMNRKERRLALRTAIASRV-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + + KTK L + ++ S + + + N L+ARN+ + +L Sbjct: 119 EDMIVVENFTEQLPQPKTKELASALARWGVEPSEKVALVLLEAGDNIYLSARNLCFVKIL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ ++ +++ + Sbjct: 179 RADSLNVYDLLNADKIVITSESLSKIQEVY 208 >gi|327479324|gb|AEA82634.1| 50S ribosomal protein L4 [Pseudomonas stutzeri DSM 4166] Length = 200 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + K RS+V+ G + + QKGTGRAR + +RGGG F P L KK Sbjct: 39 RQGSKQQKTRSDVSGGGKRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKK 98 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + ALR L++ S ++V+++ KTK L ++ + LS+ LI+ +D+N Sbjct: 99 MYRAALRSILAELVRSERLVVVEDFAVDVPKTKALASKLNGMGLSDVLIVSDA-VDQNLY 157 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 LAARN+P++++ VQG + ++ K++++ SA++ E+ Sbjct: 158 LAARNLPHVDVRDVQGSDPVSLIAYDKVLITVSAVKKFEE 197 >gi|37528542|ref|NP_931887.1| 50S ribosomal protein L4 [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577173|sp|Q7MYF2|RL4_PHOLL RecName: Full=50S ribosomal protein L4 gi|36787980|emb|CAE17097.1| 50S ribosomal protein L [Photorhabdus luminescens subsp. laumondii TTO1] Length = 201 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKEMALEDVLIITN-EVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|225010518|ref|ZP_03700989.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C] gi|225005347|gb|EEG43298.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C] Length = 209 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V + G+D G +S+ +FA+ P + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDSKGKDTGRKADLSDAVFAIDPNNHAIYLDVKQYLAHQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSIKAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ KTK + ++L + N +L++ G + N L++RN+ +++ Sbjct: 121 KSIVVVEDFNLDAPKTKDFLQVLKSLGIDNKKSLVVLGDS-NNNVYLSSRNLTQTDVVIN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL + +VL + +I +E Sbjct: 180 SELSTYKILNATSIVLLEGSIAGIE 204 >gi|51591269|emb|CAH22935.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 6 GALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 65 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 66 AGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEAP 125 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V+ Sbjct: 126 KTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVVM 184 Query: 195 SKSAIEALED 204 + A++ +E+ Sbjct: 185 TADAVKQVEE 194 >gi|32035714|ref|ZP_00135595.1| COG0088: Ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209225|ref|YP_001054450.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae L20] gi|165977197|ref|YP_001652790.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190151115|ref|YP_001969640.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250013|ref|ZP_07336215.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253187|ref|ZP_07339336.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246690|ref|ZP_07528760.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248832|ref|ZP_07530845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251059|ref|ZP_07532983.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253445|ref|ZP_07535316.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255675|ref|ZP_07537479.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257858|ref|ZP_07539615.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260127|ref|ZP_07541837.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262256|ref|ZP_07543905.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264465|ref|ZP_07546050.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322515634|ref|ZP_08068612.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976] gi|166234628|sp|A3N359|RL4_ACTP2 RecName: Full=50S ribosomal protein L4 gi|226730606|sp|B3GZ12|RL4_ACTP7 RecName: Full=50S ribosomal protein L4 gi|226730607|sp|B0BST2|RL4_ACTPJ RecName: Full=50S ribosomal protein L4 gi|126098017|gb|ABN74845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877298|gb|ABY70346.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916246|gb|ACE62498.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647869|gb|EFL78076.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651076|gb|EFL81230.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852390|gb|EFM84625.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854759|gb|EFM86949.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856889|gb|EFM89021.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859124|gb|EFM91166.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861352|gb|EFM93342.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863764|gb|EFM95690.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865773|gb|EFM97651.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868019|gb|EFM99846.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870162|gb|EFN01921.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322118285|gb|EFX90568.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976] Length = 200 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ ++V++ + KT Sbjct: 71 DIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQERLVVVEKFEIEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L++ALII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLVQKLKDLALNDALIIT-ANLDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVITA 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|22127861|ref|NP_671284.1| 50S ribosomal protein L4 [Yersinia pestis KIM 10] gi|45440068|ref|NP_991607.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str. 91001] gi|108809253|ref|YP_653169.1| 50S ribosomal protein L4 [Yersinia pestis Antiqua] gi|108814018|ref|YP_649785.1| 50S ribosomal protein L4 [Yersinia pestis Nepal516] gi|145597453|ref|YP_001161528.1| 50S ribosomal protein L4 [Yersinia pestis Pestoides F] gi|150260742|ref|ZP_01917470.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125] gi|153948290|ref|YP_001402862.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758] gi|161760556|ref|YP_072178.2| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953] gi|162418449|ref|YP_001605176.1| 50S ribosomal protein L4 [Yersinia pestis Angola] gi|165927876|ref|ZP_02223708.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. F1991016] gi|166010562|ref|ZP_02231460.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213330|ref|ZP_02239365.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398762|ref|ZP_02304286.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418684|ref|ZP_02310437.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425739|ref|ZP_02317492.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022545|ref|YP_001719050.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis YPIII] gi|186897183|ref|YP_001874295.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis PB1/+] gi|218927416|ref|YP_002345291.1| 50S ribosomal protein L4 [Yersinia pestis CO92] gi|229836308|ref|ZP_04456475.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A] gi|229840068|ref|ZP_04460227.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842150|ref|ZP_04462305.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. India 195] gi|229904550|ref|ZP_04519661.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516] gi|270488234|ref|ZP_06205308.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27] gi|294502290|ref|YP_003566352.1| 50S ribosomal protein L4 [Yersinia pestis Z176003] gi|46397669|sp|P60730|RL4_YERPE RecName: Full=50S ribosomal protein L4 gi|46397670|sp|P60731|RL4_YERPS RecName: Full=50S ribosomal protein L4 gi|122382705|sp|Q1C2U8|RL4_YERPA RecName: Full=50S ribosomal protein L4 gi|122384011|sp|Q1CCU5|RL4_YERPN RecName: Full=50S ribosomal protein L4 gi|166199926|sp|A4TGZ3|RL4_YERPP RecName: Full=50S ribosomal protein L4 gi|166990955|sp|A7FNN4|RL4_YERP3 RecName: Full=50S ribosomal protein L4 gi|226731449|sp|B2K5M9|RL4_YERPB RecName: Full=50S ribosomal protein L4 gi|226731450|sp|A9R8Z7|RL4_YERPG RecName: Full=50S ribosomal protein L4 gi|226731451|sp|B1JIW2|RL4_YERPY RecName: Full=50S ribosomal protein L4 gi|21960996|gb|AAM87535.1|AE014002_8 50S ribosomal subunit protein L4 [Yersinia pestis KIM 10] gi|48646|emb|CAA32543.1| ribosomal protein L4 (AA 1 - 201) [Yersinia pseudotuberculosis] gi|45434923|gb|AAS60484.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str. 91001] gi|108777666|gb|ABG20185.1| LSU ribosomal protein L4P [Yersinia pestis Nepal516] gi|108781166|gb|ABG15224.1| LSU ribosomal protein L4P [Yersinia pestis Antiqua] gi|115346027|emb|CAL18893.1| 50S ribosomal protein L4 [Yersinia pestis CO92] gi|145209149|gb|ABP38556.1| LSU ribosomal protein L4P [Yersinia pestis Pestoides F] gi|149290150|gb|EDM40227.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125] gi|152959785|gb|ABS47246.1| ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758] gi|162351264|gb|ABX85212.1| ribosomal protein L4 [Yersinia pestis Angola] gi|165920152|gb|EDR37453.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990652|gb|EDR42953.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205628|gb|EDR50108.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. B42003004] gi|166962678|gb|EDR58699.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051266|gb|EDR62674.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055429|gb|EDR65223.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749079|gb|ACA66597.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis YPIII] gi|186700209|gb|ACC90838.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis PB1/+] gi|229678668|gb|EEO74773.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516] gi|229690460|gb|EEO82514.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. India 195] gi|229696434|gb|EEO86481.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706376|gb|EEO92383.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A] gi|262360370|gb|ACY57091.1| 50S ribosomal protein L4 [Yersinia pestis D106004] gi|262364322|gb|ACY60879.1| 50S ribosomal protein L4 [Yersinia pestis D182038] gi|270336738|gb|EFA47515.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27] gi|294352749|gb|ADE63090.1| 50S ribosomal protein L4 [Yersinia pestis Z176003] gi|320013343|gb|ADV96914.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 10 GALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 70 AGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEAP 129 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V+ Sbjct: 130 KTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVVM 188 Query: 195 SKSAIEALED 204 + A++ +E+ Sbjct: 189 TADAVKQVEE 198 >gi|283782759|ref|YP_003373513.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis 409-05] gi|283440975|gb|ADB13441.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis 409-05] Length = 221 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILA------RVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +LA +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|242237860|ref|YP_002986041.1| 50S ribosomal protein L4 [Dickeya dadantii Ech703] gi|251787972|ref|YP_003002693.1| 50S ribosomal protein L4 [Dickeya zeae Ech1591] gi|271502245|ref|YP_003335271.1| 50S ribosomal protein L4/L1e [Dickeya dadantii Ech586] gi|242129917|gb|ACS84219.1| ribosomal protein L4/L1e [Dickeya dadantii Ech703] gi|247536593|gb|ACT05214.1| ribosomal protein L4/L1e [Dickeya zeae Ech1591] gi|270345800|gb|ACZ78565.1| ribosomal protein L4/L1e [Dickeya dadantii Ech586] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + L L + LII G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|302337478|ref|YP_003802684.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293] gi|301634663|gb|ADK80090.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293] Length = 209 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 107/205 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V ++ GE+ I++++ +F + +G + + + +R+G + +K R+EV + Sbjct: 1 MDAKVFSIKGEEVRTIALNDSVFGREVSEGAIYYAVNSELANRRVGTACTKTRAEVKGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK + QKGTG AR K + GGG FGP P LPKK++ LA++ LS K + Sbjct: 61 SKPWRQKGTGHARSGDKKSPVWVGGGTIFGPKPRDYGFRLPKKMKRLAMKSVLSLKAKED 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+++ + KTK LV +AL ++ D + A +NIP + +L + Sbjct: 121 AIKVVEDFTVESGKTKDLVGILKALVPEKRTVVVLKDDDAMIRRAGKNIPWVRMLSYNRM 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +V ++ +VL ++A +L D + Sbjct: 181 SVRELFYGKNIVLLETAAGSLNDFY 205 >gi|260770914|ref|ZP_05879843.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972] gi|260614151|gb|EEX39341.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972] gi|315178960|gb|ADT85874.1| 50S ribosomal protein L4 [Vibrio furnissii NCTC 11218] Length = 200 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V++ + KT Sbjct: 71 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVEEFSVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ LI+ G ++D N LAARN+ +++ V GI+ ++ K++++ Sbjct: 131 KELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVSGIDPVSLIAFDKVLMTA 189 Query: 197 SAIEALED 204 +A++ +E+ Sbjct: 190 AAVKQVEE 197 >gi|330432123|gb|AEC17182.1| 50S ribosomal protein L4 [Gallibacterium anatis UMN179] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGREFNEALVHQVVVAYAAGARQGSRAQKSRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R +R GG F P + KK+ A++ LS+ + ++V++ + Sbjct: 69 RSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L +ALII +D N LAARN+ +++ VQGI+ ++ K+V Sbjct: 129 PKTKVLVQKLKQMALDDALIIT-ANVDENLYLAARNLYKVDVRDVQGIDPVSLIAFEKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTVDAVKQIEE 198 >gi|152998270|ref|YP_001343105.1| 50S ribosomal protein L4 [Marinomonas sp. MWYL1] gi|189029508|sp|A6W391|RL4_MARMS RecName: Full=50S ribosomal protein L4 gi|150839194|gb|ABR73170.1| ribosomal protein L4/L1e [Marinomonas sp. MWYL1] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G + G + VS+ FA + + ++ +V+ R G K RSEVA G K + Q Sbjct: 4 NLTGAE-GTVEVSDVAFAREYNEALVHQVVTSYLAGARQGSRAQKTRSEVAGGGRKPWKQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +R GG F P + KK+ A+R S+ + ++V++ Sbjct: 63 KGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVVE 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +L + KTK + + L++ NALI+ LD N LAARNIPN+++ I+ ++ Sbjct: 123 DLKLEAPKTKLFIAKMAELNIENALIV-SHDLDDNLFLAARNIPNVDVRDAASIDPVSLI 181 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ +E+ Sbjct: 182 AYDKVLVTVGALKQVEE 198 >gi|53720820|ref|YP_109806.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243] gi|53723853|ref|YP_104165.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 23344] gi|67639131|ref|ZP_00438030.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4] gi|76809795|ref|YP_335139.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710b] gi|83721290|ref|YP_443571.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264] gi|121599603|ref|YP_994455.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1] gi|124385301|ref|YP_001027896.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229] gi|126439851|ref|YP_001060749.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668] gi|126448779|ref|YP_001082991.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247] gi|126454667|ref|YP_001068033.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a] gi|134283113|ref|ZP_01769814.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305] gi|167001698|ref|ZP_02267490.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20] gi|167582622|ref|ZP_02375496.1| 50S ribosomal protein L4 [Burkholderia thailandensis TXDOH] gi|167721576|ref|ZP_02404812.1| 50S ribosomal protein L4 [Burkholderia pseudomallei DM98] gi|167740550|ref|ZP_02413324.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 14] gi|167817755|ref|ZP_02449435.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 91] gi|167826152|ref|ZP_02457623.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 9] gi|167847664|ref|ZP_02473172.1| 50S ribosomal protein L4 [Burkholderia pseudomallei B7210] gi|167896236|ref|ZP_02483638.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 7894] gi|167904618|ref|ZP_02491823.1| 50S ribosomal protein L4 [Burkholderia pseudomallei NCTC 13177] gi|167912883|ref|ZP_02499974.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 112] gi|167920843|ref|ZP_02507934.1| 50S ribosomal protein L4 [Burkholderia pseudomallei BCC215] gi|217424680|ref|ZP_03456177.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576] gi|237814144|ref|YP_002898595.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346] gi|242316920|ref|ZP_04815936.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b] gi|254175000|ref|ZP_04881661.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399] gi|254180340|ref|ZP_04886938.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655] gi|254190303|ref|ZP_04896811.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237] gi|254198538|ref|ZP_04904959.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13] gi|254201238|ref|ZP_04907602.1| 50S ribosomal protein L4 [Burkholderia mallei FMH] gi|254206579|ref|ZP_04912930.1| 50S ribosomal protein L4 [Burkholderia mallei JHU] gi|254262086|ref|ZP_04953140.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a] gi|254300579|ref|ZP_04968024.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e] gi|254357117|ref|ZP_04973391.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280] gi|257137646|ref|ZP_05585908.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264] gi|81604183|sp|Q62GK6|RL4_BURMA RecName: Full=50S ribosomal protein L4 gi|81607670|sp|Q63Q12|RL4_BURPS RecName: Full=50S ribosomal protein L4 gi|109893580|sp|Q3JMR4|RL4_BURP1 RecName: Full=50S ribosomal protein L4 gi|109893582|sp|Q2SU28|RL4_BURTA RecName: Full=50S ribosomal protein L4 gi|166234642|sp|A3MRV5|RL4_BURM7 RecName: Full=50S ribosomal protein L4 gi|166234643|sp|A2S7H7|RL4_BURM9 RecName: Full=50S ribosomal protein L4 gi|166234644|sp|A1V8A2|RL4_BURMS RecName: Full=50S ribosomal protein L4 gi|166234645|sp|A3P0B2|RL4_BURP0 RecName: Full=50S ribosomal protein L4 gi|166234646|sp|A3NEH8|RL4_BURP6 RecName: Full=50S ribosomal protein L4 gi|52211234|emb|CAH37223.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243] gi|52427276|gb|AAU47869.1| ribosomal protein L4 [Burkholderia mallei ATCC 23344] gi|76579248|gb|ABA48723.1| ribosomal protein L4/L1 family [Burkholderia pseudomallei 1710b] gi|83655115|gb|ABC39178.1| ribosomal protein L4/L1 family [Burkholderia thailandensis E264] gi|121228413|gb|ABM50931.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1] gi|124293321|gb|ABN02590.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229] gi|126219344|gb|ABN82850.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668] gi|126228309|gb|ABN91849.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a] gi|126241649|gb|ABO04742.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247] gi|134245308|gb|EBA45401.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305] gi|147747132|gb|EDK54208.1| 50S ribosomal protein L4 [Burkholderia mallei FMH] gi|147752121|gb|EDK59187.1| 50S ribosomal protein L4 [Burkholderia mallei JHU] gi|148026181|gb|EDK84266.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280] gi|157810619|gb|EDO87789.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e] gi|157937979|gb|EDO93649.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237] gi|160696045|gb|EDP86015.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399] gi|169655278|gb|EDS87971.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13] gi|184210879|gb|EDU07922.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655] gi|217392136|gb|EEC32161.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576] gi|237505978|gb|ACQ98296.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346] gi|238519675|gb|EEP83144.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4] gi|242140159|gb|EES26561.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b] gi|243062595|gb|EES44781.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20] gi|254220775|gb|EET10159.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a] Length = 206 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|260914679|ref|ZP_05921145.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325] gi|260631278|gb|EEX49463.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325] Length = 200 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ ++V+D + KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQERLVVVDKFEVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLVQKLKELALEDVLIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|297242967|ref|ZP_06926905.1| ribosomal protein L4 [Gardnerella vaginalis AMD] gi|296889178|gb|EFH27912.1| ribosomal protein L4 [Gardnerella vaginalis AMD] Length = 221 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILA------RVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +LA +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNASGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|256420660|ref|YP_003121313.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588] gi|256035568|gb|ACU59112.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588] Length = 212 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 4/201 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + N +G+ G I + E+IF ++P ++ ++ +R G K K R+EV Sbjct: 1 MQVDILNKEGKKTGRTIELPEEIFGVEPNNHVIYLAVKQYLAAQRQGTHKVKTRAEVKGA 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG +R + ++GGG FGP P L +KV+ LA ALS K Sbjct: 61 SRKLHKQKGTGGSRKGNIRNPLYKGGGTIFGPKPHKYDIKLNRKVKDLAKISALSTKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLP 177 N I+V+++L KTK L ++ + + + N L+ RNIP ++ + Sbjct: 121 NSIIVVEDLTLDTPKTKAFAGILNNLKVNVSGRKTLFVLPEYNDNVYLSLRNIPTVDSVM 180 Query: 178 VQGINVYDILRCSKLVLSKSA 198 + IN Y+I+ + LV ++SA Sbjct: 181 LSDINTYEIMNSNVLVFTESA 201 >gi|302877802|ref|YP_003846366.1| 50S ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2] gi|302580591|gb|ADL54602.1| ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2] Length = 207 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G + S+++F + ++ +++ R G SK K R E+A + Sbjct: 1 MELKVINDKGLSTANLVASDEVFGRGYNEDLVHQLVTAYQANARAGNSKQKSRCEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA----LSDK 117 K + QKGTGRAR S +RGGGK F P G +KV R LS Sbjct: 61 RKPFAQKGTGRARAGMASSPLWRGGGKIF---PNTGEENYTQKVNRKMYRAGFAAILSKL 117 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + ++VID+L KTK L + + L ++ +++ +D N L++RN+PN+ +L Sbjct: 118 VAESRLVVIDDLTVDAPKTKLLADKIKNLGIAGRVLVITDSMDENLYLSSRNLPNVLVLE 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +V+++ A+ +E+ F Sbjct: 178 AYQADPVSLVRFPSVVVTRGAVAKIEEMF 206 >gi|312140917|ref|YP_004008253.1| 50S ribosomal protein l4 rpld [Rhodococcus equi 103S] gi|325675445|ref|ZP_08155129.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707] gi|311890256|emb|CBH49574.1| 50S ribosomal protein L4 RplD [Rhodococcus equi 103S] gi|325553416|gb|EGD23094.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707] Length = 221 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ G+ G + + +IF ++ +V+ Q R G +K R EV G Sbjct: 8 LTLDVKAAGGKTNGTVDLPSEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGG 67 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 127 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV+ + + F D L++ G + D + +N+ ++ + Sbjct: 128 RIHVITELVAGQVPSTKTAKSFLGELSDRKKFLLVVGRE-DIAAWKSVQNLDGVHPIAPD 186 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ Sbjct: 187 QLNTYDVLNSDDVVFSLEALNTF 209 >gi|307132838|ref|YP_003884854.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937] gi|306530367|gb|ADN00298.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + L L + LII G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLFKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|148693200|gb|EDL25147.1| mitochondrial ribosomal protein L4, isoform CRA_a [Mus musculus] Length = 300 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 12/213 (5%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA-YTGSK 63 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+E+ T S Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAELLNITHSN 127 Query: 64 MYVQKGTGRARH-----SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDK 117 Q + R ++ S + GG A GP P + LP KVR+L L+ AL+ K Sbjct: 128 TLCQPSSKFLRSQTSGDTNTSYATVPAGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVK 187 Query: 118 FCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNI 173 +D+ ++D+L +YL + ++R S+ L++D ++ +N A + + Sbjct: 188 LMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSF 246 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 NLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 279 >gi|90994503|ref|YP_536993.1| ribosomal protein L4 [Porphyra yezoensis] gi|109893086|sp|Q1XDH5|RK4_PORYE RecName: Full=50S ribosomal protein L4, chloroplastic gi|90819067|dbj|BAE92436.1| 50S ribosomal protein L4 [Porphyra yezoensis] Length = 214 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ R L QS KR G + +K RSEV G K + QKGTGRAR S +RGGG FG Sbjct: 36 LVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFG 95 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR--ALD 147 P P + KK R LALR AL++K S + ++++N S + KTK + LD Sbjct: 96 PKPRSFTKKMNKKERQLALRTALNNK--SVNTLIVENFNSYFHQPKTKLFMEAIHRWNLD 153 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +++ + D N L+ RN+ N+ L+ +N+ +L K++++ A+ +++ + Sbjct: 154 LNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLNIMALLAAHKIIITVDALSKIQEVY 212 >gi|111023097|ref|YP_706069.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1] gi|110822627|gb|ABG97911.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1] Length = 229 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V+ G+ G + + +IF +L +V+ Q R G +K R EV G Sbjct: 11 LTLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGG 70 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 71 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 130 Query: 122 DIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI LV+ + + F D L++ G + D + +N+ ++ + Sbjct: 131 RIHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVGRE-DIAAWKSVQNLDGVHPIAPD 189 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V S A+ + Sbjct: 190 QLNTYDVLNSDDVVFSVEALNSF 212 >gi|282855207|ref|ZP_06264539.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J139] gi|282581795|gb|EFB87180.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J139] gi|314982252|gb|EFT26345.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA3] gi|315090439|gb|EFT62415.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA4] Length = 301 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNRI 126 Query: 124 MVIDNLV--SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV K + V +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKVVLSGVAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|284929562|ref|YP_003422084.1| 50S ribosomal protein L4P [cyanobacterium UCYN-A] gi|284810006|gb|ADB95703.1| LSU ribosomal protein L4P [cyanobacterium UCYN-A] Length = 210 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 110/212 (51%), Gaps = 10/212 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE G ++++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGELVGQVTLNLKVAKEESSAHLLHRAVVRHLANARQGNACSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+S + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAISSRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNIN 174 D++++ + + + + KTK+ + + ALI+ + D N L+ RN+ + Sbjct: 119 EDLIIVKDFIEQFPDPKTKHFTAALTRWGVESRKKVALIL--LETDNNIYLSVRNLSYVK 176 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L +N+YD+L K+V++ A+ +++ + Sbjct: 177 ILRADSLNIYDLLNADKIVMTSEALVKIQEVY 208 >gi|260592764|ref|ZP_05858222.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319] gi|260535295|gb|EEX17912.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319] Length = 209 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDE 205 >gi|325529679|gb|EGD06542.1| 50S ribosomal protein L4 [Burkholderia sp. TJI49] Length = 206 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDILLEAPKTKLLADKFKAMGLESVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|70732881|ref|YP_262649.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf-5] gi|109893621|sp|Q4K534|RL4_PSEF5 RecName: Full=50S ribosomal protein L4 gi|68347180|gb|AAY94786.1| ribosomal protein L4/L1 family [Pseudomonas fluorescens Pf-5] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+V+ G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ A+R L++ ++ ++V+ + Sbjct: 63 GTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVETPKTKDLLGKLNNMSLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YDKVLITVSAVKKFEE 197 >gi|90020608|ref|YP_526435.1| 50S ribosomal protein L4 [Saccharophagus degradans 2-40] gi|109893634|sp|Q21M56|RL4_SACD2 RecName: Full=50S ribosomal protein L4 gi|89950208|gb|ABD80223.1| LSU ribosomal protein L4P [Saccharophagus degradans 2-40] Length = 204 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ G KG +SVSE F + Q ++ + + R G K R+ V+ G Sbjct: 1 MELSIATPQGA-KGTVSVSEAAFGREFNQDLVHQAVVAFMAGARQGTKAQKNRAAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P L KK+ A+R LS+ Sbjct: 60 KKPWRQKGTGRARAGTIRSPLWRSGGVTFAAEPRDHSQKLNKKMYRAAIRCILSELARQE 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + DL++ LII G + N LAARN+ +++ V G+ Sbjct: 120 RLVVVEEFDLDAPKTKDLVQKLAQFDLADVLII-GEDVSENLYLAARNLHKVDVRDVNGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++R K+V++ +A++ LE+ Sbjct: 179 DPVSLIRFDKVVVTVAALKKLEE 201 >gi|94312247|ref|YP_585457.1| 50S ribosomal protein L4 [Cupriavidus metallidurans CH34] gi|166199851|sp|Q1LI38|RL4_RALME RecName: Full=50S ribosomal protein L4 gi|93356099|gb|ABF10188.1| 50S ribosomal subunit protein L4 [Cupriavidus metallidurans CH34] Length = 206 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQIGAGVAASAEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+PN+ ++ + Sbjct: 121 GRINVVDGFAVDAPKTKLLADKFKAMGLDSVLIITD-NLDENLYLASRNLPNVAVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|302345075|ref|YP_003813428.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845] gi|302149373|gb|ADK95635.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845] Length = 209 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDE 205 >gi|209693925|ref|YP_002261853.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238] gi|226730608|sp|B6EPS6|RL4_ALISL RecName: Full=50S ribosomal protein L4 gi|208007876|emb|CAQ78006.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238] Length = 200 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 106/188 (56%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ AL+ LS+ + ++V+++ + KT Sbjct: 71 TIRSPIWRSGGVTFAAKPQDHSLKVNKKMYRGALKSILSELVRQDRLIVVEDFSIEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI+ ++ +K++++ Sbjct: 131 KELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGIDPVSLVAFNKVLMTA 189 Query: 197 SAIEALED 204 +A++ +E+ Sbjct: 190 AAVKQVEE 197 >gi|149376684|ref|ZP_01894443.1| Ribosomal protein L4 [Marinobacter algicola DG893] gi|149359057|gb|EDM47522.1| Ribosomal protein L4 [Marinobacter algicola DG893] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 + G KG ISVS+ FA + ++ +V+ R G K RSEVA G K + Q Sbjct: 4 TITGSGKG-ISVSDAAFAKDFNESLVHQVVTAYMSGARQGTRAQKTRSEVAGGGKKPWRQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R S+ ++V+D Sbjct: 63 KGTGRARAGTIRSPLWRSGGVTFAAKPQSFEQKVNRKMYRAAMRSIFSELVRQERLVVVD 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ + KTK + + +SNALI+ +++N LA+RNIP++++ V G++ ++ Sbjct: 123 DMNVETPKTKAFTAKLSDIGVSNALILSD-NVEQNLHLASRNIPHVDVRDVAGLDPVSLV 181 Query: 188 RCSKLVLSKSAIEALED 204 K+V++ A++ +E+ Sbjct: 182 AFDKVVVTVPALKKIEE 198 >gi|219681869|ref|YP_002468255.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471574|ref|ZP_05635573.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254803721|sp|B8D9U6|RL4_BUCA5 RecName: Full=50S ribosomal protein L4 gi|219624712|gb|ACL30867.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+++ + V+SVSE IFA + ++ +V+ S R G K R+EV+ +G Sbjct: 1 MELVVKDV----QNVLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 57 RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V +N KTK LV + + ++L N LI+ ++D N LA+RN+ ++++ V I Sbjct: 117 RLIVFENFSLNAPKTKLLVQKLKDINLKNVLIVTN-KIDNNLFLASRNLYSVDVKDVHSI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEE 198 >gi|90409446|ref|ZP_01217510.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3] gi|90309448|gb|EAS37669.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VS+ F + + ++ +V+ + R G K RS+V+ G K + QKGTGRA Sbjct: 9 QSALEVSDATFGREFNEALVHQVVVAYAAGARQGTRAQKNRSDVSGGGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + + GGG F P + +K+ A+R LS+ + ++V++N Sbjct: 69 RAGTIRSPIWVGGGVTFAARPQDHSQKVNRKMYRGAVRSILSELVRQDRLIVVENFTVSA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + +DL + LII +LD N LAARN+ +++ VQGI+ ++ K+V Sbjct: 129 PKTKELKAKLKEMDLKDVLIIT-EELDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ SA++ +E+ Sbjct: 188 VTASAVKKIEE 198 >gi|327332710|gb|EGE74444.1| 50S ribosomal protein L4 [Propionibacterium acnes HL097PA1] Length = 301 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|297181139|gb|ADI17336.1| hypothetical protein [uncultured Oceanospirillales bacterium HF0070_21F08] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 102/197 (51%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K R+ V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRAAVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F P + +K+ ALR S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPLWRGGGKTFAAEPRDFSQKVNRKMYRGALRCIFSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + ++ + L+LS+ LI+ ++D N LAARN+P +++ G++ ++ Sbjct: 122 EFNIDSPKTKQVASKLKDLELSSVLIVT-SEVDENLYLAARNLPKVDIRDASGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ LE+ Sbjct: 181 AFEKVLVTVPALKQLEE 197 >gi|15617117|ref|NP_240330.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682424|ref|YP_002468808.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11134325|sp|P57590|RL4_BUCAI RecName: Full=50S ribosomal protein L4 gi|254803722|sp|B8D848|RL4_BUCAT RecName: Full=50S ribosomal protein L4 gi|25294987|pir||H84990 50S ribosomal protein L4 [imported] - Buchnera sp. (strain APS) gi|10039182|dbj|BAB13216.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622157|gb|ACL30313.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086245|gb|ADP66327.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086822|gb|ADP66903.1| 50S ribosomal protein L4 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087409|gb|ADP67489.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087904|gb|ADP67983.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+++ + V+SVSE IFA + ++ +V+ S R G K R+EV+ +G Sbjct: 1 MELVVKDV----QNVLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 57 RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V +N KTK LV + + ++L N LI+ ++D N LA+RN+ ++++ V I Sbjct: 117 RLIVFENFSLDAPKTKLLVQKLKDINLKNVLIVTN-KIDNNLFLASRNLYSVDVKDVHSI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEE 198 >gi|325269534|ref|ZP_08136150.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608] gi|324988153|gb|EGC20120.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608] Length = 209 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E++F ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENVFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173 N I+V+++ KTK V +++ L +DG ++ ++N L+ARN+ Sbjct: 121 NAIVVVEDFDFDAPKTKDFV------NIAKNLKVDGKKILLLLPGVEKNVYLSARNLQKT 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y IL LV+++++++ ++ Sbjct: 175 EVMTAAQVNSYKILNADVLVVTENSLKVID 204 >gi|282858373|ref|ZP_06267553.1| ribosomal protein L4/L1 family protein [Prevotella bivia JCVIHMP010] gi|282588821|gb|EFB93946.1| ribosomal protein L4/L1 family protein [Prevotella bivia JCVIHMP010] Length = 209 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 14/211 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------CQLDRNFQLAARNIPNI 173 N ++V+++ + KTK V +++ L +DG +++++ L+ARN+ Sbjct: 121 NAVVVVEDFNLEAPKTKDFV------NITKNLKVDGKKVLLVLPEVEKSVYLSARNLKKA 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ +N Y +L LV+++++++ +++ Sbjct: 175 EVMTAAQVNSYKVLNADVLVVTENSLKVIDE 205 >gi|239618264|ref|YP_002941586.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1] gi|259491563|sp|C5CGR3|RL4_KOSOT RecName: Full=50S ribosomal protein L4 gi|239507095|gb|ACR80582.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N+ G G + + + IF ++P ++ R + Q +R G +K+K RSEV+ Sbjct: 1 MAQTDVLNVTGNKIGTVELKDSIFNIEPNYDVMFRYVDMQLANRRAGTAKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG GP P L KK++ LAL+ ALS +F Sbjct: 61 GRKPWPQKHTGRARTGSIRNPLWRHGGVIHGPKPKDWSKKLNKKMKKLALKSALSLRFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLD--RNFQLAARNIPNINL 175 +++V+D++ KTK + + L LS+A L I + D N +L+ RNIP + + Sbjct: 121 GNLVVVDDIKLDRPKTKQMREIVKNLGLSDAKKVLFILPWKRDEYENVKLSGRNIPGVKV 180 Query: 176 L--------------PVQGINVYDILRCSKLVLSKSAIEALED 204 + + G+NV+DIL K+V + + +E+ Sbjct: 181 IIADNPGNLVNGRSSNIDGLNVFDILNHEKIVFTVDLVRKIEE 223 >gi|87306537|ref|ZP_01088684.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645] gi|87290716|gb|EAQ82603.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645] Length = 222 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M L + + GE G + DI +Q + V+ +Q+ R G ++K R EVA Sbjct: 1 MPSLPIFDTTGEKVGSYDIELTDIAPRISKQLLHDAVVMYQA-NLRQGTHRTKARGEVAG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + KMY QKGTG AR K RGGG P + L +K LA R A + K Sbjct: 60 STKKMYRQKGTGNARAGHKRSGVRRGGGHIHAKRPRDYSYRLNRKALQLATRMAFASKIQ 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 S +++++ L E KTK + +AL + + +I LD +ARNI + + PV Sbjct: 120 SGQVVILNELALAEVKTKAVANTLKALKVYGGSTLITIASLDDKVYKSARNIEKVTVSPV 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N IL +LV++KSA++A+ Sbjct: 180 SELNALKILSPKRLVVTKSAMDAI 203 >gi|320540608|ref|ZP_08040258.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str. Tucson] gi|320029539|gb|EFW11568.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str. Tucson] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKEMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|227115271|ref|ZP_03828927.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVETFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|229592902|ref|YP_002875021.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25] gi|312963367|ref|ZP_07777850.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6] gi|259491566|sp|C3K2X5|RL4_PSEFS RecName: Full=50S ribosomal protein L4 gi|229364768|emb|CAY52765.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25] gi|311282447|gb|EFQ61045.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+V G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ ALR L++ ++ ++V+ + Sbjct: 63 GTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAALRSILAELVRTDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVESPKTKDLLGKLNNMSLTDVLIVSEA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YDKVLITVSAVKKFEE 197 >gi|78064925|ref|YP_367694.1| 50S ribosomal protein L4 [Burkholderia sp. 383] gi|109893581|sp|Q39KG6|RL4_BURS3 RecName: Full=50S ribosomal protein L4 gi|77965670|gb|ABB07050.1| LSU ribosomal protein L4P [Burkholderia sp. 383] Length = 206 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLAEKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|149371630|ref|ZP_01891046.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49] gi|149355257|gb|EDM43817.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49] Length = 209 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 3/189 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S++++ ++P + ++ +R G K+K R+E+A + K+ QKGTG AR Sbjct: 17 VELSKEVYGIEPNNHAVYLDVKQYLANQRQGTHKAKERAEIAGSTRKIKKQKGTGTARAG 76 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S F+GGG+ FGP P L K ++ LA + AL+ K S I+V+++L KT Sbjct: 77 SIKSGVFKGGGRMFGPRPRNYTFKLNKNLKRLARKSALTLKANSESILVLEDLNFDTPKT 136 Query: 137 KYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 K + L LS +L + G + + N L++RN+ + ++ ++ Y I+ + +VL Sbjct: 137 KDFTAVLKGLGLSGKKSLFVLG-ESNNNVYLSSRNLSGVEVIKASELSTYKIMNANNVVL 195 Query: 195 SKSAIEALE 203 + ++E +E Sbjct: 196 FEGSLEGIE 204 >gi|52426102|ref|YP_089239.1| 50S ribosomal protein L4 [Mannheimia succiniciproducens MBEL55E] gi|81609390|sp|Q65QV6|RL4_MANSM RecName: Full=50S ribosomal protein L4 gi|52308154|gb|AAU38654.1| RplD protein [Mannheimia succiniciproducens MBEL55E] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LAVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V+D KT Sbjct: 71 DIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVDKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ VQGI+ ++ +K+V++ Sbjct: 131 KVLVQKLKDLALEDVLIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFNKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|226226280|ref|YP_002760386.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27] gi|226089471|dbj|BAH37916.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27] Length = 213 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 1/157 (0%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G +K+K R EV K + QKGTGRAR S + GGG FGP P +PK Sbjct: 50 RRQGTAKTKTRGEVTGGNQKPWKQKGTGRARQGSTRAPNWPGGGTVFGPQPRSYTQIVPK 109 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRN 162 +VR LA + AL+ + N ++V++ L KTK + F L L +++ + N Sbjct: 110 QVRVLARKSALNARARENAVVVVEALNFSAPKTKAMTELFTKLGVLGKKVLVLTDGVKPN 169 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 L+ARN+ +++P N Y IL +V+ SA+ Sbjct: 170 VYLSARNLGQAHVMPYSDANTYHILWSDVVVIESSAL 206 >gi|85060255|ref|YP_455957.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans'] gi|109893639|sp|Q2NQM3|RL4_SODGM RecName: Full=50S ribosomal protein L4 gi|84780775|dbj|BAE75552.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans'] Length = 201 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGSRGQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ K Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSVKA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDANGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|315109231|gb|EFT81207.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL030PA2] Length = 301 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|107024302|ref|YP_622629.1| 50S ribosomal protein L4 [Burkholderia cenocepacia AU 1054] gi|115350323|ref|YP_772162.1| 50S ribosomal protein L4 [Burkholderia ambifaria AMMD] gi|116688373|ref|YP_833996.1| 50S ribosomal protein L4 [Burkholderia cenocepacia HI2424] gi|134294444|ref|YP_001118179.1| 50S ribosomal protein L4 [Burkholderia vietnamiensis G4] gi|170700695|ref|ZP_02891690.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10] gi|170731683|ref|YP_001763630.1| 50S ribosomal protein L4 [Burkholderia cenocepacia MC0-3] gi|171318349|ref|ZP_02907507.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5] gi|172059342|ref|YP_001806994.1| 50S ribosomal protein L4 [Burkholderia ambifaria MC40-6] gi|254246596|ref|ZP_04939917.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184] gi|122324265|sp|Q0BJ45|RL4_BURCM RecName: Full=50S ribosomal protein L4 gi|123071806|sp|Q1BRU9|RL4_BURCA RecName: Full=50S ribosomal protein L4 gi|166234641|sp|A0K3M6|RL4_BURCH RecName: Full=50S ribosomal protein L4 gi|166234647|sp|A4JAP1|RL4_BURVG RecName: Full=50S ribosomal protein L4 gi|226730627|sp|B1YRD1|RL4_BURA4 RecName: Full=50S ribosomal protein L4 gi|226730628|sp|B1JU23|RL4_BURCC RecName: Full=50S ribosomal protein L4 gi|105894491|gb|ABF77656.1| LSU ribosomal protein L4P [Burkholderia cenocepacia AU 1054] gi|115280311|gb|ABI85828.1| LSU ribosomal protein L4P [Burkholderia ambifaria AMMD] gi|116646462|gb|ABK07103.1| LSU ribosomal protein L4P [Burkholderia cenocepacia HI2424] gi|124871372|gb|EAY63088.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184] gi|134137601|gb|ABO53344.1| LSU ribosomal protein L4P [Burkholderia vietnamiensis G4] gi|169814925|gb|ACA89508.1| ribosomal protein L4/L1e [Burkholderia cenocepacia MC0-3] gi|170134365|gb|EDT02698.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10] gi|171096427|gb|EDT41326.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5] gi|171991859|gb|ACB62778.1| ribosomal protein L4/L1e [Burkholderia ambifaria MC40-6] Length = 206 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|289427743|ref|ZP_06429455.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J165] gi|295131386|ref|YP_003582049.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137] gi|289159234|gb|EFD07426.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J165] gi|291376076|gb|ADD99930.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137] gi|313763237|gb|EFS34601.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL013PA1] gi|313773096|gb|EFS39062.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL074PA1] gi|313793259|gb|EFS41317.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA1] gi|313801097|gb|EFS42365.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA2] gi|313808838|gb|EFS47292.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA2] gi|313810368|gb|EFS48082.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL083PA1] gi|313812296|gb|EFS50010.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL025PA1] gi|313816573|gb|EFS54287.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL059PA1] gi|313818018|gb|EFS55732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL046PA2] gi|313819931|gb|EFS57645.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA1] gi|313823421|gb|EFS61135.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA2] gi|313828365|gb|EFS66079.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL063PA2] gi|313830135|gb|EFS67849.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL007PA1] gi|313832594|gb|EFS70308.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL056PA1] gi|313837950|gb|EFS75664.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL086PA1] gi|314914333|gb|EFS78164.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA4] gi|314917653|gb|EFS81484.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA1] gi|314919615|gb|EFS83446.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA3] gi|314925787|gb|EFS89618.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA3] gi|314930206|gb|EFS94037.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL067PA1] gi|314957187|gb|EFT01291.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL027PA1] gi|314957763|gb|EFT01866.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA1] gi|314960867|gb|EFT04968.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA2] gi|314963541|gb|EFT07641.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL082PA1] gi|314969876|gb|EFT13974.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA1] gi|314973016|gb|EFT17112.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL053PA1] gi|314975512|gb|EFT19607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL045PA1] gi|314979746|gb|EFT23840.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL072PA2] gi|314984888|gb|EFT28980.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA1] gi|314986054|gb|EFT30146.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA2] gi|314988670|gb|EFT32761.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA3] gi|315077164|gb|EFT49231.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL053PA2] gi|315079849|gb|EFT51825.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL078PA1] gi|315083217|gb|EFT55193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL027PA2] gi|315086829|gb|EFT58805.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA3] gi|315089922|gb|EFT61898.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL072PA1] gi|315096756|gb|EFT68732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL038PA1] gi|315097984|gb|EFT69960.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL059PA2] gi|315100627|gb|EFT72603.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL046PA1] gi|327325170|gb|EGE66976.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA3] gi|327325200|gb|EGE67005.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA2] gi|327444001|gb|EGE90655.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL043PA1] gi|327449371|gb|EGE96025.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL013PA2] gi|327449401|gb|EGE96055.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL043PA2] gi|327451422|gb|EGE98076.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA3] gi|327451603|gb|EGE98257.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL092PA1] gi|327451890|gb|EGE98544.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL083PA2] gi|328752104|gb|EGF65720.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA1] gi|328755500|gb|EGF69116.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL025PA2] gi|328756284|gb|EGF69900.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL020PA1] gi|328761382|gb|EGF74909.1| 50S ribosomal protein L4 [Propionibacterium acnes HL099PA1] Length = 301 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|50843317|ref|YP_056544.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202] gi|81611203|sp|Q6A6M7|RL4_PROAC RecName: Full=50S ribosomal protein L4 gi|50840919|gb|AAT83586.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202] gi|315106072|gb|EFT78048.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL030PA1] Length = 301 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|15603279|ref|NP_246353.1| 50S ribosomal protein L4 [Pasteurella multocida subsp. multocida str. Pm70] gi|46577290|sp|Q9CL33|RL4_PASMU RecName: Full=50S ribosomal protein L4 gi|12721789|gb|AAK03498.1| RpL4 [Pasteurella multocida subsp. multocida str. Pm70] Length = 200 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ + KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLIVVEKFEVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLVQKLKELALEDVLIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|241667386|ref|ZP_04754964.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875935|ref|ZP_05248645.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841956|gb|EET20370.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 207 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G + GV+ V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLRLETPKTKEFKAIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|167626805|ref|YP_001677305.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189029504|sp|B0U0Y8|RL4_FRAP2 RecName: Full=50S ribosomal protein L4 gi|167596806|gb|ABZ86804.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 207 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G + GV+ V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLRLETPKTKEFKVIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|126666812|ref|ZP_01737789.1| Ribosomal protein L4 [Marinobacter sp. ELB17] gi|126628857|gb|EAZ99477.1| Ribosomal protein L4 [Marinobacter sp. ELB17] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 + G +G I+VSE FA + ++ +V+ R G K RSEV G K + Q Sbjct: 4 TITGSGQG-ITVSEATFAKDFNEALVHQVVVAYMAAGRQGTKAQKTRSEVRGGGKKPWRQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R LS+ ++V+D Sbjct: 63 KGTGRARAGTIRSPIWRSGGVTFAAKPRSYEQKVNRKMYRAAMRSILSELVRQERLIVVD 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK + + LSN LI+ LD+N LA+RN+P++++ V G++ ++ Sbjct: 123 DFSIDTPKTKAFTAKLADMGLSNVLILS-ENLDQNLHLASRNVPHVDVRDVAGLDPVSLV 181 Query: 188 RCSKLVLSKSAIEALED 204 K+V++ A++ +E+ Sbjct: 182 AHEKIVVTVPALKKIEE 198 >gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL063PA1] Length = 301 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSEAGLDAF 206 >gi|219685255|ref|ZP_03540075.1| 50S ribosomal protein L4 [Borrelia garinii Far04] gi|219673351|gb|EED30370.1| 50S ribosomal protein L4 [Borrelia garinii Far04] Length = 209 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + N ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SAI L + + Sbjct: 181 KLRVVDLFYAKNLIALESAINKLNEFY 207 >gi|206558642|ref|YP_002229402.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315] gi|226730629|sp|B4E5C1|RL4_BURCJ RecName: Full=50S ribosomal protein L4 gi|198034679|emb|CAR50546.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315] Length = 206 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVIAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|329298532|ref|ZP_08255868.1| 50S ribosomal protein L4 [Plautia stali symbiont] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAACARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V+++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVESFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTAEAVKQVEE 198 >gi|254038480|ref|ZP_04872536.1| ribosomal protein L4 [Escherichia sp. 1_1_43] gi|226838986|gb|EEH71009.1| ribosomal protein L4 [Escherichia sp. 1_1_43] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K RSEV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|113460209|ref|YP_718266.1| 50S ribosomal protein L4 [Haemophilus somnus 129PT] gi|122945126|sp|Q0I162|RL4_HAES1 RecName: Full=50S ribosomal protein L4 gi|112822252|gb|ABI24341.1| LSU ribosomal protein L4P [Haemophilus somnus 129PT] Length = 200 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + + L++ALII LD N LAARN+ +++ VQ I+ ++ K+V++ Sbjct: 131 KVLVQKLKDMALTDALIITAS-LDENLFLAARNLYKVDVRDVQAIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALEDRF 206 A++ +E+ F Sbjct: 190 DAVKQIEEMF 199 >gi|309973731|gb|ADO96932.1| 50S ribosomal protein L4 [Haemophilus influenzae R2846] Length = 200 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFELDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L + +ALII LD N LAARN+ +++ VQGI+ ++ K++++ Sbjct: 131 KVLVQKLKGLAVEDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVIVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|109896799|ref|YP_660054.1| 50S ribosomal protein L4 [Pseudoalteromonas atlantica T6c] gi|122972346|sp|Q15YN8|RL4_PSEA6 RecName: Full=50S ribosomal protein L4 gi|109699080|gb|ABG39000.1| LSU ribosomal protein L4P [Pseudoalteromonas atlantica T6c] gi|332172250|gb|AEE21504.1| ribosomal protein L4/L1e [Glaciecola agarilytica 4H-3-7+YE-5] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + + ++ +V+ R G K RSEV G+K + QKGTGRA Sbjct: 9 QSALEVSEATFGREFNEALVHQVVVAFGAGARQGSKAQKTRSEVRGGGAKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +R GG F P + KK+ A++ LS+ ++V++ + Sbjct: 69 RAGTIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIQSILSELVRQERLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L+++ L+LS+ LI+ ++D N LAARN+ +++ VQGI+ ++ K++ Sbjct: 129 PKTKELLSKLNGLELSDVLIVT-SEVDENLFLAARNLYKVDVRDVQGIDPVSLIAFEKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ALE+ Sbjct: 188 ITADAVKALEE 198 >gi|120437173|ref|YP_862859.1| 50S ribosomal protein L4 [Gramella forsetii KT0803] gi|166234671|sp|A0M597|RL4_GRAFK RecName: Full=50S ribosomal protein L4 gi|117579323|emb|CAL67792.1| 50S ribosomal protein L4 [Gramella forsetii KT0803] Length = 208 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +S+ +FA++P + ++ +R G K+K R+E+ + Sbjct: 1 MEIAVLDIKGKETGRKAKLSDSVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIKGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPRNYGFKLNKNLKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 IMVI++ KTK +AL + + +LI+ G ++N L++RN+ ++ Sbjct: 121 KAIMVIEDFSFDTPKTKNFTEVLKALGIESKKSLIVLGDS-NKNVYLSSRNLKTSEVISS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL +V + ++E +E + Sbjct: 180 SELSTYKILNAKSIVFLEGSLEGIESKL 207 >gi|167620736|ref|ZP_02389367.1| 50S ribosomal protein L4 [Burkholderia thailandensis Bt4] Length = 206 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAAVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEE 203 >gi|123444097|ref|YP_001008067.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163258|ref|YP_004299835.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166199925|sp|A1JS46|RL4_YERE8 RecName: Full=50S ribosomal protein L4 gi|122091058|emb|CAL13941.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325667488|gb|ADZ44132.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861854|emb|CBX72025.1| 50S ribosomal protein L4 [Yersinia enterocolitica W22703] Length = 201 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|270264372|ref|ZP_06192638.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13] gi|270041508|gb|EFA14606.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13] Length = 201 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|319952195|ref|YP_004163462.1| lsu ribosomal protein l4p [Cellulophaga algicola DSM 14237] gi|319420855|gb|ADV47964.1| LSU ribosomal protein L4P [Cellulophaga algicola DSM 14237] Length = 210 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G I +S+ ++ ++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDIKGKETGRSIELSDAVYGIEPNKHAVYLDVKQYLAHQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNLKRLARKSALSIKTNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ KTK ++L L N +L + G + N L++RN+ ++ Sbjct: 121 KAILVVEDFNFDAPKTKDFKNVLKSLGLENKKSLFVLGDS-NNNVYLSSRNLKGSEVITN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL + +VL + ++E +E Sbjct: 180 SDLSTYKILNANNIVLLEGSLEGIE 204 >gi|303233121|ref|ZP_07319794.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4] gi|302480706|gb|EFL43793.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4] Length = 208 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ + +S ++F ++P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIDVLNVEGKKADAVELSSNVFGIEPNIAVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHAL--PKKVRSLALRHALSDKF 118 G K + QKGTGRAR + Q+ GGG FGP P HAL KK + LA+R LS K Sbjct: 61 GVKPFRQKGTGRARQGTIRAPQWAGGGVVFGPTP--HSHALRSNKKEKKLAMRSVLSGKV 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLP 177 +++++D L +E K +AL L + + + D L+ RN+P + + Sbjct: 119 ADGELVLLDKLAFEEPSCKQAAAIIKALGLQDKRVTLVVDDDDVVSYLSFRNLPKVIIYA 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 +N ++ + LV++ + + LE+ Sbjct: 179 ASEVNTRILIDNAALVMTVAVAKQLEE 205 >gi|121603121|ref|YP_980450.1| 50S ribosomal protein L4 [Polaromonas naphthalenivorans CJ2] gi|166199840|sp|A1VIQ1|RL4_POLNA RecName: Full=50S ribosomal protein L4 gi|120592090|gb|ABM35529.1| LSU ribosomal protein L4P [Polaromonas naphthalenivorans CJ2] Length = 206 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G + VS+ +F + + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNDQGLSSSKVDVSDTVFGREYNESLIHQVIVAFQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P H + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L++ L+I Q+D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLTVDSPKTKVLADKFKAMNLNSVLVI-ADQVDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPLSLVHYKKVLVTKAAMDQLKEMF 205 >gi|218249414|ref|YP_002374989.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7] gi|224532481|ref|ZP_03673106.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23] gi|226321789|ref|ZP_03797315.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26] gi|226730622|sp|B7J244|RL4_BORBZ RecName: Full=50S ribosomal protein L4 gi|218164602|gb|ACK74663.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7] gi|224512553|gb|EEF82929.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23] gi|226232978|gb|EEH31731.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26] Length = 209 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|305665136|ref|YP_003861423.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170] gi|88709888|gb|EAR02120.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170] Length = 209 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G + +S+++FA++P + ++ +R G K+K R E+ + Sbjct: 1 MKVAVLDIKGKETGRKVDLSDNVFAIEPNNHAIYLDVKQYLAHQRQGTHKAKERGEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYSQKLNKNVKRLARKSALSIKTKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 +MV+++ + KTK V ++L L N +L + G + L++RN+ ++ Sbjct: 121 KAVMVVEDFDLETPKTKDFVQILKSLGLENKKSLFVLGDS-NNGVYLSSRNLERSEVVIN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL + +VL + ++E +E Sbjct: 180 SELSTYKILNANNIVLLEGSLEGIE 204 >gi|240047260|ref|YP_002960648.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae HRC/581] gi|239984832|emb|CAT04822.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae] Length = 220 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 11/195 (5%) Query: 19 VSEDIFALK-PQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++++IF L+ P Q I +L ++ R+R K K R+EV+ TG K + QKGTG+AR Sbjct: 31 LNQEIFGLEVPHSQAIFDTILYERASRRR-ATHKVKSRAEVSGTGKKPWKQKGTGKARAG 89 Query: 77 SKSVSQFRGGGKAFGPVP----IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 S+ F GGG+AFGP I V+ KKVR LA ALS I+V D+ Sbjct: 90 SRRSPIFVGGGRAFGPTNNKNYAIKVN---KKVRRLAFVSALSQLAHEKQILV-DDFAMD 145 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + TK LV + + L+ A + D N ++ARN+ N+ + + V ++ L Sbjct: 146 KISTKELVKKLASYQLAKARFVLIASSDENLFISARNLQNVVVTKPSSLLVEQLIGADVL 205 Query: 193 VLSKSAIEALEDRFK 207 ++S+ I +E RFK Sbjct: 206 IISQKEINEIEGRFK 220 >gi|149198923|ref|ZP_01875964.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155] gi|149137918|gb|EDM26330.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155] Length = 215 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 5/167 (2%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K RSE G K + QKGTG AR S + GGG AFGP P + KK Sbjct: 45 RSGSANTKTRSEKRGGGRKPWRQKGTGNARAGSTRSPIWTGGGVAFGPKPRSYAKNVNKK 104 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII----DGCQLD 160 VR LA+R AL+++ + +++V+D+ ++ TK + +++ ++ +I D + Sbjct: 105 VRRLAVRRALAERIQAEELIVVDSFAFEKPSTKTAIAFLESVNAADRPVIILSDDLTENI 164 Query: 161 RNFQLAARNIPNINL-LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N + A++ N++L + +N YDIL K++++K+A+E + R Sbjct: 165 ENLENTAKSFNNVSLVMTASEVNAYDILSGKKVIITKAALEQVGQRI 211 >gi|77461299|ref|YP_350806.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1] gi|109893623|sp|Q3K5Y9|RL4_PSEPF RecName: Full=50S ribosomal protein L4 gi|77385302|gb|ABA76815.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1] Length = 200 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 1/196 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 L+ D I VSE F + + ++ + + R G + K RS+V G + + QK Sbjct: 3 LNVNDAQAIEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGGKRPWRQK 62 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR + +RGGG F P L KK+ A+R L++ ++ ++V+ + Sbjct: 63 GTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTDRLVVVQD 122 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG + ++ Sbjct: 123 FAVETPKTKDLLGKLNNMSLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIA 181 Query: 189 CSKLVLSKSAIEALED 204 K++++ SA++ E+ Sbjct: 182 YDKVLITVSAVKKFEE 197 >gi|86132545|ref|ZP_01051138.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134] gi|85816787|gb|EAQ37972.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134] Length = 209 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +S+ +F ++P + + ++ +R G K+K R+E+A + Sbjct: 1 MKVAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTMKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I VI++ KTK V +AL L N +LI+ G + + N L++RN+ ++ Sbjct: 121 NAITVIEDFNFDAPKTKDFVNVLKALGLENKKSLIVLG-ESNNNVYLSSRNLKASKVVKS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ + +V + ++E +E Sbjct: 180 SELSTYGIMNANNVVFLEGSLEGVE 204 >gi|7670462|dbj|BAA95082.1| unnamed protein product [Mus musculus] Length = 184 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 6/151 (3%) Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG+GRARH S + GGG A GP P + LP KVR+L L+ AL+ K Sbjct: 14 GRKPWQQKGSGRARHGSIRSPLWLGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLM 73 Query: 120 SNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINL 175 +D+ ++D+L +YL + ++R S+ L++D ++ +N A + + NL Sbjct: 74 QDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNL 132 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+NVY +L+ LVL+ ++ LED+ Sbjct: 133 IPAVGLNVYSMLKHQTLVLTLPSVALLEDKL 163 >gi|330430100|gb|AEC21434.1| 50S ribosomal protein L4 [Pusillimonas sp. T7-7] Length = 206 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +++ R G KGR V ++ Sbjct: 1 MELKLLNDQGQSSATVAAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKGRDTVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ LR LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPIWRGGGRAFPNSPDENFSQKVNKKMYRAGLRAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D V KTK + +++ L + LII LD N LA RN+P++ ++ + Sbjct: 121 DRIAVVDTFVLDAPKTKLAADKLKSMGLESVLIITDV-LDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLIHYKKVLITKPAIAQLEE 203 >gi|325964165|ref|YP_004242071.1| 50S ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3] gi|323470252|gb|ADX73937.1| LSU ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3] Length = 207 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKEC 134 S GGG GP P PKK+ + ALR ALSD+ + I V+ LV SK Sbjct: 67 SIRAPHMTGGGIVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVEGSKPS 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA---RNIPNINLLPVQGINVYDILRCSK 191 L T + N L++ ++R +AA RN+ +++L +N YD+L Sbjct: 127 SKAALATLRGVSERKNLLVV----IERANDVAALSVRNLDGVHVLYADQLNTYDVLVSDD 182 Query: 192 LVLSKSAIEAL 202 +V +K+A +A Sbjct: 183 VVFTKAAYDAF 193 >gi|328955913|ref|YP_004373246.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2] gi|328456237|gb|AEB07431.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2] Length = 208 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 5/197 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKGRSEVA 58 M ++ V+N +G ++ ++ ++P I+ +++ Q WR+ G +K R EV Sbjct: 1 MSKIEVKNAEGSKVTETELASAVYGIEPNIHIMHHIVKCQMACWRR--GTQSTKSRGEVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S Q+R GG FGP P + K LA+R ALS K Sbjct: 59 GGGRKPWRQKGTGRARQGSIRAGQWRHGGVIFGPKPRSYAKRMNNKEVKLAMRSALSAKL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLP 177 ++++V+D+ + TK + R+L+L L I + D N L+ RNIP ++ Sbjct: 119 RDDELVVVDDYGFDKPSTKAAMRLIRSLELEGKRLTIIVREDDVNAYLSFRNIPRTFIIT 178 Query: 178 VQGINVYDILRCSKLVL 194 N +D++ L++ Sbjct: 179 PNEANTHDLVNNGALLM 195 >gi|314924184|gb|EFS88015.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL001PA1] gi|314965094|gb|EFT09193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL082PA2] gi|315093674|gb|EFT65650.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL060PA1] gi|315103968|gb|EFT75944.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA2] gi|327326711|gb|EGE68497.1| 50S ribosomal protein L4 [Propionibacterium acnes HL103PA1] Length = 301 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK + +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGVAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|11465779|ref|NP_053923.1| ribosomal protein L4 [Porphyra purpurea] gi|1710475|sp|P51313|RK4_PORPU RecName: Full=50S ribosomal protein L4, chloroplastic gi|1276779|gb|AAC08199.1| 50S ribosomal protein L4 [Porphyra purpurea] Length = 214 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 8/180 (4%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ R L QS KR G + +K RSEV G K + QKGTGRAR S +RGGG FG Sbjct: 36 LVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFG 95 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYL---VTRFRAL 146 P P + KK LALR AL++K S + +V++N + ++ KTK +TR+ L Sbjct: 96 PKPRSFAKKMNKKESQLALRTALNNK--SVNTLVVENFDTYFQKPKTKLFIEAITRWN-L 152 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 DL+ L++ + D N L+ RN+ N+ ++ +N+ +L K++++ A+ +++ + Sbjct: 153 DLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLNIMALLAAHKVIITVDALSKIQEVY 212 >gi|221069449|ref|ZP_03545554.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1] gi|220714472|gb|EED69840.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1] Length = 207 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMTAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L KTK L +F+A++LS+++++ ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206 >gi|313836022|gb|EFS73736.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA2] gi|314929561|gb|EFS93392.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL044PA1] gi|314970554|gb|EFT14652.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA3] gi|328906229|gb|EGG26004.1| ribosomal protein L4/L1 family protein [Propionibacterium sp. P08] Length = 301 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 3/201 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDVFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N I Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ +LV + TK L +LS L++ + D L+ RN+ +++L + Sbjct: 127 FIVTSLVDGDKPSTKQAKAVLSGLAELSKVLVV-LARSDEVDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ +A Sbjct: 186 NTYDVVNSRTIVFSQAGFDAF 206 >gi|264676443|ref|YP_003276349.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2] gi|299531235|ref|ZP_07044646.1| 50S ribosomal protein L4 [Comamonas testosteroni S44] gi|262206955|gb|ACY31053.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2] gi|298720818|gb|EFI61764.1| 50S ribosomal protein L4 [Comamonas testosteroni S44] Length = 207 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L KTK L +F+A++LS+++++ ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206 >gi|226942779|ref|YP_002797852.1| 50S ribosomal protein L4 [Azotobacter vinelandii DJ] gi|259491548|sp|C1DKL4|RL4_AZOVD RecName: Full=50S ribosomal protein L4 gi|226717706|gb|ACO76877.1| Ribosomal protein L4/L1e [Azotobacter vinelandii DJ] Length = 200 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VSE F + + ++ + + R G + K RS+V+ G + + QKGTGRAR Sbjct: 11 IEVSERTFGGEFNETLVHQAVVAYLAGGRQGSKQQKNRSDVSGGGKRPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F P L KK+ ALR LS+ ++V+++ KT Sbjct: 71 TSRGPLWRGGGVTFAARPQNHDQKLNKKMYRAALRSILSELVRQERLVVVEDFAVDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV++ L LS+ LI+ +D+N LAARN+P++++ V G + ++ K++++ Sbjct: 131 KSLVSKLGGLGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVLGSDPVSLIAYDKVLITV 189 Query: 197 SAIEALED 204 A++ E+ Sbjct: 190 PAVKKFEE 197 >gi|238788909|ref|ZP_04632699.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641] gi|238797237|ref|ZP_04640738.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969] gi|238718874|gb|EEQ10689.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969] gi|238722936|gb|EEQ14586.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641] Length = 201 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVT-SELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|325577128|ref|ZP_08147612.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392] gi|301155331|emb|CBW14797.1| 50S ribosomal subunit protein L4 [Haemophilus parainfluenzae T3T1] gi|325160710|gb|EGC72831.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFELDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L + +ALII LD N LAARN+ +++ VQGI+ ++ K++++ Sbjct: 131 KVLVQKLKDLAVEDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVIVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|24114597|ref|NP_709107.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 301] gi|30065380|ref|NP_839551.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T] gi|110807166|ref|YP_690686.1| 50S ribosomal protein L4 [Shigella flexneri 5 str. 8401] gi|46577238|sp|Q83PY4|RL4_SHIFL RecName: Full=50S ribosomal protein L4 gi|123342428|sp|Q0SZY4|RL4_SHIF8 RecName: Full=50S ribosomal protein L4 gi|24053795|gb|AAN44814.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 301] gi|30043642|gb|AAP19362.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 2457T] gi|110616714|gb|ABF05381.1| 50S ribosomal subunit protein L4 [Shigella flexneri 5 str. 8401] gi|281602684|gb|ADA75668.1| 50S ribosomal protein L4 [Shigella flexneri 2002017] gi|313647371|gb|EFS11823.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T] Length = 201 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLQKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|114330575|ref|YP_746797.1| 50S ribosomal protein L4 [Nitrosomonas eutropha C91] gi|122314431|sp|Q0AIJ4|RL4_NITEC RecName: Full=50S ribosomal protein L4 gi|114307589|gb|ABI58832.1| LSU ribosomal protein L4P [Nitrosomonas eutropha C91] Length = 206 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+++ R+ +G+ I VS+ +F + ++ +++ R G KGRSEVA + Sbjct: 1 MVKIPCRSENGQVVN-IEVSDSVFDRVYNEALVHQIVTSYLANARSGTRAQKGRSEVAGS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC- 119 K + QKGTGRAR + S +RGGGK F P KKV R + F Sbjct: 60 TRKQWRQKGTGRARVGAASNPLWRGGGKIFPNKP---TENFTKKVNRKMYRAGMCTIFSQ 116 Query: 120 ---SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++ ++ I + KTK+ + + + L N +II ++D N LA+RN+PNI ++ Sbjct: 117 LLRNSKLVAISEFRVETTKTKFFLQKLKNYQLENVMIITD-EVDENLYLASRNVPNIKVV 175 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALE 203 + I+ +L +V+++ A+ +E Sbjct: 176 EIDLIDPVSLLSYDNVVITREAVNKIE 202 >gi|255635335|gb|ACU18021.1| unknown [Glycine max] Length = 224 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 69/121 (57%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + + D+F L ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 102 IPVTNFHNEDKGYMVLPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 161 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S QFRGG GP P + KKVR L L+ ALS + + Sbjct: 162 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKL 221 Query: 124 M 124 + Sbjct: 222 L 222 >gi|170718247|ref|YP_001785267.1| 50S ribosomal protein L4 [Haemophilus somnus 2336] gi|189029507|sp|B0UX14|RL4_HAES2 RecName: Full=50S ribosomal protein L4 gi|168826376|gb|ACA31747.1| ribosomal protein L4/L1e [Haemophilus somnus 2336] Length = 200 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDVPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + + L++ALII LD N LAARN+ +++ VQ I+ ++ K+V++ Sbjct: 131 KVLVQKLKDMALTDALIITAS-LDENLFLAARNLYKVDVRDVQAIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALEDRF 206 A++ +E+ F Sbjct: 190 DAVKQIEEMF 199 >gi|15594824|ref|NP_212613.1| 50S ribosomal protein L4 [Borrelia burgdorferi B31] gi|195941616|ref|ZP_03086998.1| 50S ribosomal protein L4 [Borrelia burgdorferi 80a] gi|216264894|ref|ZP_03436886.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a] gi|221218083|ref|ZP_03589549.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a] gi|223888691|ref|ZP_03623282.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b] gi|224533597|ref|ZP_03674186.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a] gi|225548627|ref|ZP_03769674.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a] gi|225549551|ref|ZP_03770517.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a] gi|225552234|ref|ZP_03773174.1| 50S ribosomal protein L4 [Borrelia sp. SV1] gi|226321111|ref|ZP_03796653.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805] gi|3915828|sp|P94268|RL4_BORBU RecName: Full=50S ribosomal protein L4 gi|2688412|gb|AAC66863.1| ribosomal protein L4 (rplD) [Borrelia burgdorferi B31] gi|215981367|gb|EEC22174.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a] gi|221192031|gb|EEE18252.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a] gi|223885507|gb|EEF56606.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b] gi|224513270|gb|EEF83632.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a] gi|225369828|gb|EEG99275.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a] gi|225370657|gb|EEH00093.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a] gi|225371232|gb|EEH00662.1| 50S ribosomal protein L4 [Borrelia sp. SV1] gi|226233521|gb|EEH32260.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805] gi|312148420|gb|ADQ31079.1| ribosomal protein L4/L1 family [Borrelia burgdorferi JD1] gi|312149445|gb|ADQ29516.1| 50S ribosomal protein L4 [Borrelia burgdorferi N40] Length = 209 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFNVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|307565141|ref|ZP_07627649.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A] gi|307346172|gb|EFN91501.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A] Length = 209 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNNHVLYLAVKQYLAAQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173 N ++V+++ KTK V +++ L +DG ++ ++N L+ARN+ Sbjct: 121 NAVVVVEDFKLDTPKTKDFV------NITKNLKVDGKKVLLVLPEAEKNVYLSARNLKKS 174 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALE 203 ++ +N Y +L LV+++++++ ++ Sbjct: 175 EVMIAAQLNSYKVLNADVLVITENSLKVID 204 >gi|328675408|gb|AEB28083.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida 3523] Length = 207 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK + +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLKLETPKTKEFKSIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|83748150|ref|ZP_00945177.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551] gi|207721897|ref|YP_002252335.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2] gi|207723096|ref|YP_002253501.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609] gi|300702781|ref|YP_003744382.1| 50S ribosomal protein L4 [Ralstonia solanacearum CFBP2957] gi|83725118|gb|EAP72269.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551] gi|206587065|emb|CAQ17649.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2] gi|206588289|emb|CAQ18987.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609] gi|299070443|emb|CBJ41738.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum CFBP2957] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + KTK L +FRA+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMGLDSVLVITD-NMDENLYLASRNLAHVFVVEARH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++ ++ K++++K+A+ +E+ K Sbjct: 180 VDPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|219684271|ref|ZP_03539215.1| 50S ribosomal protein L4 [Borrelia garinii PBr] gi|219672260|gb|EED29313.1| 50S ribosomal protein L4 [Borrelia garinii PBr] Length = 209 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + N ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|293391696|ref|ZP_06636030.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952230|gb|EFE02349.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 200 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ VQGI+ ++ +K+V++ Sbjct: 131 KVLVQKLKELALEDVLIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFNKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|157372775|ref|YP_001480764.1| 50S ribosomal protein L4 [Serratia proteamaculans 568] gi|166990953|sp|A8GKJ6|RL4_SERP5 RecName: Full=50S ribosomal protein L4 gi|157324539|gb|ABV43636.1| ribosomal protein L4/L1e [Serratia proteamaculans 568] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|327399522|ref|YP_004340391.1| 50S ribosomal protein L4/L1e [Hippea maritima DSM 10411] gi|327182151|gb|AEA34332.1| ribosomal protein L4/L1e [Hippea maritima DSM 10411] Length = 207 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 6/199 (3%) Query: 13 DKGVISVSEDIFALKPQQ----GIL-ARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 DK +V E ++P++ G+L RV+R R G + +K R EV+ G K + Q Sbjct: 7 DKKNQAVGEVEINIQPKEVKNKGVLFNRVVRAMLMNARQGTASTKTRGEVSGGGKKPWRQ 66 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGG FGP P + KK + +A AL+ + ++VID Sbjct: 67 KGTGRARAGSIRSPLWVGGGVIFGPKPRDYELKMNKKEKRVAFIEALAQRIEEGKLIVID 126 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +L ++ KT+ + L+L AL + ++ N L+ RNI + + + +N YD+L Sbjct: 127 DLSFEKPKTRDAYEIVKNLNLKKALFVLEKGME-NAYLSLRNIKGVEVRNIDTLNTYDVL 185 Query: 188 RCSKLVLSKSAIEALEDRF 206 R +++ K+ +E L R Sbjct: 186 RFQNIIIPKTVVEKLNGRI 204 >gi|170085109|ref|XP_001873778.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651330|gb|EDR15570.1| predicted protein [Laccaria bicolor S238N-H82] Length = 253 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R EV +G+K++ QKGTGRAR GGG AFGP P LP+K Sbjct: 70 RQGSANTKTRGEVRGSGAKLHRQKGTGRARVGDGQSPIRVGGGVAFGPKPRDFSTKLPRK 129 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNF 163 V + +R ALS K + ++ +L KT+ LV + L L L + G + Sbjct: 130 VIEMGMRVALSVKMKERQVGIMASLDWPNAKTRNLVQKIDLLGLRKTLFVTGEGVVPAGL 189 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + A NIP + ++ +NVY+I++ +LVL A+E E K Sbjct: 190 KQAMANIPLVQVITADEVNVYEIMKWQRLVLDVKAVEFFERTLK 233 >gi|16272719|ref|NP_438937.1| 50S ribosomal protein L4 [Haemophilus influenzae Rd KW20] gi|68249374|ref|YP_248486.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP] gi|145630523|ref|ZP_01786303.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|145632131|ref|ZP_01787866.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655] gi|145634811|ref|ZP_01790519.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA] gi|145636666|ref|ZP_01792333.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] gi|145638422|ref|ZP_01794032.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII] gi|148826577|ref|YP_001291330.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE] gi|148827967|ref|YP_001292720.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG] gi|229844645|ref|ZP_04464784.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1] gi|229845828|ref|ZP_04465940.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1] gi|260579869|ref|ZP_05847699.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW] gi|260581596|ref|ZP_05849393.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127] gi|319775288|ref|YP_004137776.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047] gi|319897728|ref|YP_004135925.1| 50S ribosomal subunit protein l4 [Haemophilus influenzae F3031] gi|329122784|ref|ZP_08251356.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116] gi|1173051|sp|P44345|RL4_HAEIN RecName: Full=50S ribosomal protein L4 gi|81336199|sp|Q4QMC1|RL4_HAEI8 RecName: Full=50S ribosomal protein L4 gi|166234672|sp|A5UDU6|RL4_HAEIE RecName: Full=50S ribosomal protein L4 gi|166234673|sp|A5UHT1|RL4_HAEIG RecName: Full=50S ribosomal protein L4 gi|1573788|gb|AAC22437.1| ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd KW20] gi|68057573|gb|AAX87826.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP] gi|144983913|gb|EDJ91355.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|144987038|gb|EDJ93568.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655] gi|145267977|gb|EDK07973.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA] gi|145270192|gb|EDK10128.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] gi|145272751|gb|EDK12658.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII] gi|148716737|gb|ABQ98947.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE] gi|148719209|gb|ABR00337.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG] gi|229810832|gb|EEP46549.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1] gi|229812359|gb|EEP48049.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1] gi|260093153|gb|EEW77086.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW] gi|260095189|gb|EEW79080.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127] gi|301169495|emb|CBW29096.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae 10810] gi|309751561|gb|ADO81545.1| 50S ribosomal protein L4 [Haemophilus influenzae R2866] gi|317433234|emb|CBY81609.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3031] gi|317449879|emb|CBY86090.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047] gi|327472048|gb|EGF17486.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116] Length = 200 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFELDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L + +ALII LD N LAARN+ +++ VQGI+ ++ K++++ Sbjct: 131 KVLVQKLKDLAVEDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVIVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|146313384|ref|YP_001178458.1| 50S ribosomal protein L4 [Enterobacter sp. 638] gi|166990949|sp|A4WFC7|RL4_ENT38 RecName: Full=50S ribosomal protein L4 gi|145320260|gb|ABP62407.1| LSU ribosomal protein L4P [Enterobacter sp. 638] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVETFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|322831073|ref|YP_004211100.1| ribosomal protein L4/L1e [Rahnella sp. Y9602] gi|321166274|gb|ADW71973.1| ribosomal protein L4/L1e [Rahnella sp. Y9602] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V++ + ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVVKDA----QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEE 198 >gi|237728654|ref|ZP_04559135.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2] gi|261342789|ref|ZP_05970647.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus ATCC 35316] gi|226909276|gb|EEH95194.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2] gi|288314967|gb|EFC53905.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus ATCC 35316] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V+++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVESFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|73542862|ref|YP_297382.1| 50S ribosomal protein L4 [Ralstonia eutropha JMP134] gi|194291021|ref|YP_002006928.1| 50S ribosomal protein l4 [Cupriavidus taiwanensis LMG 19424] gi|109893626|sp|Q46WE5|RL4_RALEJ RecName: Full=50S ribosomal protein L4 gi|226730647|sp|B3R7S2|RL4_CUPTR RecName: Full=50S ribosomal protein L4 gi|72120275|gb|AAZ62538.1| LSU ribosomal protein L4P [Ralstonia eutropha JMP134] gi|193224856|emb|CAQ70867.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Cupriavidus taiwanensis LMG 19424] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQVGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+P++ ++ + Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMGLDSVLIITDS-LDENLYLASRNLPHVAVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|91785464|ref|YP_560670.1| 50S ribosomal protein L4 [Burkholderia xenovorans LB400] gi|187925615|ref|YP_001897257.1| 50S ribosomal protein L4 [Burkholderia phytofirmans PsJN] gi|296163320|ref|ZP_06846081.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1] gi|123062495|sp|Q13TH1|RL4_BURXL RecName: Full=50S ribosomal protein L4 gi|226730632|sp|B2T750|RL4_BURPP RecName: Full=50S ribosomal protein L4 gi|91689418|gb|ABE32618.1| LSU ribosomal protein L4P [Burkholderia xenovorans LB400] gi|187716809|gb|ACD18033.1| ribosomal protein L4/L1e [Burkholderia phytofirmans PsJN] gi|295886459|gb|EFG66316.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ +S S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILITKAAVAQIEE 203 >gi|317494341|ref|ZP_07952755.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917591|gb|EFV38936.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|120553653|ref|YP_958004.1| ribosomal protein L4/L1e [Marinobacter aquaeolei VT8] gi|166234682|sp|A1TYJ8|RL4_MARAV RecName: Full=50S ribosomal protein L4 gi|120323502|gb|ABM17817.1| LSU ribosomal protein L4P [Marinobacter aquaeolei VT8] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 + G KG ISVS+ FA + ++ +V+ R G K RSEV+ G K + Q Sbjct: 4 TITGSGKG-ISVSDAAFAKDFNEALVHQVVTAYMAAGRQGTKAQKTRSEVSGGGKKPWRQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R S+ ++V+D Sbjct: 63 KGTGRARAGTIRSPIWRSGGVTFAAKPRDFEQKVNRKMYRAAMRSIFSELVRQERLVVVD 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK + L +SNALI+ +++N LA+RN+P++++ V G++ ++ Sbjct: 123 DMNVDTPKTKAFTAKLSDLGVSNALILS-ENVEQNLHLASRNVPHVDVRDVAGLDPVSLV 181 Query: 188 RCSKLVLSKSAIEALED 204 K+V++ A++ +E+ Sbjct: 182 AFEKVVVTVPALKKIEE 198 >gi|251793828|ref|YP_003008560.1| 50S ribosomal protein L4 [Aggregatibacter aphrophilus NJ8700] gi|315633456|ref|ZP_07888746.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393] gi|247535227|gb|ACS98473.1| ribosomal protein L4/L1 family [Aggregatibacter aphrophilus NJ8700] gi|315477498|gb|EFU68240.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393] Length = 200 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V+D KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVDKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ QGI+ ++ K+V++ Sbjct: 131 KVLVQKLKELALEDVLIITAS-LDENLFLAARNLYKVDVRDAQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|227328948|ref|ZP_03832972.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVETFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|302765881|ref|XP_002966361.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii] gi|302792867|ref|XP_002978199.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii] gi|300154220|gb|EFJ20856.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii] gi|300165781|gb|EFJ32388.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii] Length = 230 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L + + DGE G + + + + +G++ R + + +R G + +K R+EV G K Sbjct: 7 LPLFSFDGECTGSVFLDLKVASAHTARGLVHRGVITELQNRRRGTASTKTRAEVRGGGRK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S+ GGG FGP P + KK + LA+ AL + D Sbjct: 67 PYKQKGTGRARRGSQRTPLRPGGGIVFGPKPKDWGIKINKKEKRLAISTALQS--AAVDS 124 Query: 124 MVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +++ K E KTK+ + +D+S +I ++ + ++RNI + +L + Sbjct: 125 IAVEDFEEKFTEPKTKFFLAAMERWGVDVSKHSLIFATNVNDFLEKSSRNIKTVKMLTPR 184 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+LR K++ + S I+ L + Sbjct: 185 SLNLYDVLRADKILFTSSGIDYLNQSY 211 >gi|312200019|ref|YP_004020080.1| ribosomal protein L4/L1e [Frankia sp. EuI1c] gi|311231355|gb|ADP84210.1| ribosomal protein L4/L1e [Frankia sp. EuI1c] Length = 234 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 1/205 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 ++V G + G + +IF ++ ++ +V+ Q R G +K R EV G K Sbjct: 24 VTVHAPAGGEGGTAELPGEIFDVQVNVPLIHQVVVAQQAAARQGTHDTKTRGEVRGGGKK 83 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N + Sbjct: 84 PYRQKGTGRARQGSLRAPQFAGGGTVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNRV 143 Query: 124 MVIDNLVSKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ + V E TK ++ + S +++ + D + RN+ ++LL +N Sbjct: 144 HVVSSFVDGETPSTKAALSALLEIASSRRVLVVVERTDELTWKSLRNVSTVHLLDPGQLN 203 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 YD++ +V ++ A+ + R K Sbjct: 204 TYDVMISDDVVFTQGALASFIGRGK 228 >gi|113869430|ref|YP_727919.1| 50S ribosomal protein L4 [Ralstonia eutropha H16] gi|123032610|sp|Q0K620|RL4_RALEH RecName: Full=50S ribosomal protein L4 gi|113528206|emb|CAJ94551.1| LSU ribosomal protein L4 [Ralstonia eutropha H16] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ + S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQIGAGVDASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFTQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+P++ ++ + Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMGLDSVLIITDS-LDENLYLASRNLPHVAVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|289424792|ref|ZP_06426574.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes SK187] gi|289154755|gb|EFD03438.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes SK187] Length = 301 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N + Sbjct: 67 PWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRM 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQ---LAARNIPNINLLPV 178 V+ +LV + TK L +L L++ LDR+ + L+ RN+ +++L Sbjct: 127 FVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVV----LDRSDEIDWLSVRNLSEVHVLAA 182 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V S++ ++A Sbjct: 183 DQLNTYDVVNARTIVFSQAGLDAF 206 >gi|161616465|ref|YP_001590430.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|296105027|ref|YP_003615173.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|161365829|gb|ABX69597.1| hypothetical protein SPAB_04280 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|295059486|gb|ADF64224.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 5 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 64 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 65 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 124 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 125 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 183 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 184 MTADAVKQVEE 194 >gi|116667437|pdb|2GYA|C Chain C, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 gi|116667489|pdb|2GYC|C Chain C, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 Length = 198 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|317049839|ref|YP_004117487.1| 50S ribosomal protein L4/L1e [Pantoea sp. At-9b] gi|316951456|gb|ADU70931.1| ribosomal protein L4/L1e [Pantoea sp. At-9b] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V+++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVESFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTAEAVKQVEE 198 >gi|304310017|ref|YP_003809615.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1] gi|301795750|emb|CBL43949.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1] Length = 200 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G +SVSE F + ++ +V+ R G K RSEV+ G K + Q Sbjct: 2 NLNIASGGSVSVSEVAFGRDFNEALVHQVVTAFMAGSRQGTKGQKTRSEVSGGGKKPWKQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +RGGGK F + KK+ A++ LS+ + ++V+D Sbjct: 62 KGSGRARAGTIRSPIWRGGGKVFAASTRDHSQKVNKKMYRGAMQCILSELIRQDRVVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK L+ + + L L +ALI+ +D N L+ARN+ N+ + V+ I+ ++ Sbjct: 122 QFAMENPKTKELIQKLKGLGLDSALIVSDF-VDENLFLSARNVVNVGVCDVEAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K+V++ A+ E+ Sbjct: 181 AFDKVVVTVGALRKFEE 197 >gi|168004892|ref|XP_001755145.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693738|gb|EDQ80089.1| predicted protein [Physcomitrella patens subsp. patens] Length = 240 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + L V L+G G + + D+ +P+ + ++ R L + +R G + + RSEV Sbjct: 3 VTLPVLTLEGGAAGEVEM--DLRTARPETAKSVVHRGLICEMQNRRRGTASTLTRSEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S GGG FGP P + KK + LA+ AL Sbjct: 61 GGRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKQLAISTALQS--A 118 Query: 120 SNDIMVIDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 S + +V+++ K KTK + R+ N+L+ D + L++RN+ Sbjct: 119 SANTVVVEDFEEKFTAPKTKEFIAALMRWGVKPGENSLLFSMNPSD-SLVLSSRNVSTCK 177 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ + +N+YD+LR KL+L+KSA+E LE ++ Sbjct: 178 LMTPRSLNLYDVLRADKLILTKSAVEYLEQQY 209 >gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933] gi|15833438|ref|NP_312211.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. Sakai] gi|16131198|ref|NP_417778.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|16762844|ref|NP_458461.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766728|ref|NP_462343.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26249913|ref|NP_755953.1| 50S ribosomal protein L4 [Escherichia coli CFT073] gi|29144331|ref|NP_807673.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415358|ref|YP_152433.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181943|ref|YP_218360.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74313838|ref|YP_312257.1| 50S ribosomal protein L4 [Shigella sonnei Ss046] gi|82545682|ref|YP_409629.1| 50S ribosomal protein L4 [Shigella boydii Sb227] gi|82778615|ref|YP_404964.1| 50S ribosomal protein L4 [Shigella dysenteriae Sd197] gi|89110691|ref|AP_004471.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. W3110] gi|91212755|ref|YP_542741.1| 50S ribosomal protein L4 [Escherichia coli UTI89] gi|110643558|ref|YP_671288.1| 50S ribosomal protein L4 [Escherichia coli 536] gi|117625597|ref|YP_858920.1| 50S ribosomal protein L4 [Escherichia coli APEC O1] gi|156932233|ref|YP_001436149.1| 50S ribosomal protein L4 [Cronobacter sakazakii ATCC BAA-894] gi|157148899|ref|YP_001456217.1| 50S ribosomal protein L4 [Citrobacter koseri ATCC BAA-895] gi|157156089|ref|YP_001464787.1| 50S ribosomal protein L4 [Escherichia coli E24377A] gi|157162793|ref|YP_001460111.1| 50S ribosomal protein L4 [Escherichia coli HS] gi|161506007|ref|YP_001573120.1| 50S ribosomal protein L4 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168260851|ref|ZP_02682824.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468002|ref|ZP_02701839.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168752800|ref|ZP_02777822.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113] gi|168753086|ref|ZP_02778093.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401] gi|168769184|ref|ZP_02794191.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486] gi|168778201|ref|ZP_02803208.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196] gi|168784352|ref|ZP_02809359.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076] gi|168785137|ref|ZP_02810144.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869] gi|170018445|ref|YP_001723399.1| 50S ribosomal protein L4 [Escherichia coli ATCC 8739] gi|170082838|ref|YP_001732158.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. DH10B] gi|170679638|ref|YP_001745581.1| 50S ribosomal protein L4 [Escherichia coli SMS-3-5] gi|170769547|ref|ZP_02904000.1| ribosomal protein L4 [Escherichia albertii TW07627] gi|187732957|ref|YP_001882003.1| 50S ribosomal protein L4 [Shigella boydii CDC 3083-94] gi|188493095|ref|ZP_03000365.1| ribosomal protein L4 [Escherichia coli 53638] gi|194435462|ref|ZP_03067627.1| ribosomal protein L4 [Shigella dysenteriae 1012] gi|194445826|ref|YP_002042689.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447625|ref|YP_002047462.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472387|ref|ZP_03078371.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736512|ref|YP_002116381.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195939868|ref|ZP_03085250.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. EC4024] gi|197248901|ref|YP_002148358.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262161|ref|ZP_03162235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364288|ref|YP_002143925.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243728|ref|YP_002217401.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386551|ref|ZP_03213163.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354933|ref|YP_002228734.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858681|ref|YP_002245332.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208805624|ref|ZP_03247961.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206] gi|208813906|ref|ZP_03255235.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045] gi|208819842|ref|ZP_03260162.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042] gi|209398551|ref|YP_002272775.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115] gi|209920785|ref|YP_002294869.1| 50S ribosomal protein L4 [Escherichia coli SE11] gi|213021588|ref|ZP_03336035.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052954|ref|ZP_03345832.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423717|ref|ZP_03356697.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425751|ref|ZP_03358501.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213865565|ref|ZP_03387684.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488619|ref|YP_002331050.1| 50S ribosomal protein L4 [Escherichia coli O127:H6 str. E2348/69] gi|217326437|ref|ZP_03442521.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588] gi|218550594|ref|YP_002384385.1| 50S ribosomal protein L4 [Escherichia fergusonii ATCC 35469] gi|218555876|ref|YP_002388789.1| 50S ribosomal protein L4 [Escherichia coli IAI1] gi|218560380|ref|YP_002393293.1| 50S ribosomal protein L4 [Escherichia coli S88] gi|218691605|ref|YP_002399817.1| 50S ribosomal protein L4 [Escherichia coli ED1a] gi|218697011|ref|YP_002404678.1| 50S ribosomal protein L4 [Escherichia coli 55989] gi|218702081|ref|YP_002409710.1| 50S ribosomal protein L4 [Escherichia coli IAI39] gi|218706926|ref|YP_002414445.1| 50S ribosomal protein L4 [Escherichia coli UMN026] gi|224585234|ref|YP_002639033.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883450|ref|ZP_04001255.1| 50S ribosomal protein L4 [Escherichia coli 83972] gi|237703049|ref|ZP_04533530.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA] gi|238902410|ref|YP_002928206.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952] gi|253771857|ref|YP_003034688.1| 50S ribosomal protein L4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163247|ref|YP_003046355.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606] gi|254795256|ref|YP_003080093.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. TW14359] gi|256020678|ref|ZP_05434543.1| 50S ribosomal protein L4 [Shigella sp. D9] gi|256025953|ref|ZP_05439818.1| 50S ribosomal protein L4 [Escherichia sp. 4_1_40B] gi|260599638|ref|YP_003212209.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032] gi|260846117|ref|YP_003223895.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str. 12009] gi|260857440|ref|YP_003231331.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str. 11368] gi|260870062|ref|YP_003236464.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str. 11128] gi|261224624|ref|ZP_05938905.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. FRIK2000] gi|261254482|ref|ZP_05947015.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. FRIK966] gi|283788045|ref|YP_003367910.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168] gi|283835736|ref|ZP_06355477.1| hypothetical protein CIT292_10128 [Citrobacter youngae ATCC 29220] gi|289824751|ref|ZP_06544216.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291284677|ref|YP_003501495.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615] gi|293406916|ref|ZP_06650840.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412] gi|293412738|ref|ZP_06655406.1| 50S ribosomal protein L4/L1 [Escherichia coli B354] gi|293416736|ref|ZP_06659373.1| 50S ribosomal protein L4/L1 [Escherichia coli B185] gi|293453637|ref|ZP_06664056.1| 50S ribosomal protein L4/L1 [Escherichia coli B088] gi|297516597|ref|ZP_06934983.1| 50S ribosomal protein L4 [Escherichia coli OP50] gi|298382656|ref|ZP_06992251.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302] gi|300815471|ref|ZP_07095696.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1] gi|300822878|ref|ZP_07103014.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7] gi|300896667|ref|ZP_07115183.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1] gi|300903567|ref|ZP_07121489.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1] gi|300918292|ref|ZP_07134896.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1] gi|300921872|ref|ZP_07138028.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1] gi|300932212|ref|ZP_07147491.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1] gi|300935317|ref|ZP_07150327.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1] gi|300946541|ref|ZP_07160806.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1] gi|300954806|ref|ZP_07167233.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1] gi|300973998|ref|ZP_07172405.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1] gi|300979890|ref|ZP_07174766.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1] gi|301018817|ref|ZP_07183061.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1] gi|301021131|ref|ZP_07185171.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1] gi|301046090|ref|ZP_07193268.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1] gi|301305528|ref|ZP_07211620.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1] gi|301325114|ref|ZP_07218648.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1] gi|301643861|ref|ZP_07243892.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1] gi|306816338|ref|ZP_07450476.1| 50S ribosomal protein L4 [Escherichia coli NC101] gi|307140002|ref|ZP_07499358.1| 50S ribosomal protein L4 [Escherichia coli H736] gi|307315102|ref|ZP_07594685.1| ribosomal protein L4/L1e [Escherichia coli W] gi|309785641|ref|ZP_07680272.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617] gi|309794594|ref|ZP_07689016.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7] gi|311277726|ref|YP_003939957.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1] gi|312968356|ref|ZP_07782566.1| 50S ribosomal protein L4 [Escherichia coli 2362-75] gi|312972420|ref|ZP_07786594.1| 50S ribosomal protein L4 [Escherichia coli 1827-70] gi|331644015|ref|ZP_08345144.1| ribosomal protein L4/L1 family protein [Escherichia coli H736] gi|331649116|ref|ZP_08350202.1| ribosomal protein L4/L1 family protein [Escherichia coli M605] gi|331654912|ref|ZP_08355911.1| ribosomal protein L4/L1 family protein [Escherichia coli M718] gi|331659609|ref|ZP_08360547.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206] gi|331664932|ref|ZP_08365833.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143] gi|331670148|ref|ZP_08370987.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271] gi|331674821|ref|ZP_08375578.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280] gi|331679388|ref|ZP_08380058.1| ribosomal protein L4/L1 family protein [Escherichia coli H591] gi|331684961|ref|ZP_08385547.1| ribosomal protein L4/L1 family protein [Escherichia coli H299] gi|46397662|sp|P60723|RL4_ECOLI RecName: Full=50S ribosomal protein L4 gi|46397663|sp|P60724|RL4_ECOL6 RecName: Full=50S ribosomal protein L4 gi|46397664|sp|P60725|RL4_ECO57 RecName: Full=50S ribosomal protein L4 gi|46397665|sp|P60726|RL4_SALTY RecName: Full=50S ribosomal protein L4 gi|46397666|sp|P60727|RL4_SALTI RecName: Full=50S ribosomal protein L4 gi|75480349|sp|Q57J33|RL4_SALCH RecName: Full=50S ribosomal protein L4 gi|81599606|sp|Q5PIV3|RL4_SALPA RecName: Full=50S ribosomal protein L4 gi|109893636|sp|Q31VV7|RL4_SHIBS RecName: Full=50S ribosomal protein L4 gi|109893637|sp|Q32B32|RL4_SHIDS RecName: Full=50S ribosomal protein L4 gi|109893638|sp|Q3YWU0|RL4_SHISS RecName: Full=50S ribosomal protein L4 gi|122422184|sp|Q1R604|RL4_ECOUT RecName: Full=50S ribosomal protein L4 gi|122957940|sp|Q0TCE2|RL4_ECOL5 RecName: Full=50S ribosomal protein L4 gi|166234654|sp|A8AQL8|RL4_CITK8 RecName: Full=50S ribosomal protein L4 gi|166234664|sp|A1AGK6|RL4_ECOK1 RecName: Full=50S ribosomal protein L4 gi|166234665|sp|A7MPH8|RL4_ENTS8 RecName: Full=50S ribosomal protein L4 gi|166990947|sp|A7ZSK8|RL4_ECO24 RecName: Full=50S ribosomal protein L4 gi|166990948|sp|A8A5C4|RL4_ECOHS RecName: Full=50S ribosomal protein L4 gi|189029502|sp|B1IPY0|RL4_ECOLC RecName: Full=50S ribosomal protein L4 gi|189042882|sp|A9MN48|RL4_SALAR RecName: Full=50S ribosomal protein L4 gi|226730655|sp|B7MCT4|RL4_ECO45 RecName: Full=50S ribosomal protein L4 gi|226730656|sp|B5YTP0|RL4_ECO5E RecName: Full=50S ribosomal protein L4 gi|226730657|sp|B7NLN8|RL4_ECO7I RecName: Full=50S ribosomal protein L4 gi|226730658|sp|B7M1N3|RL4_ECO8A RecName: Full=50S ribosomal protein L4 gi|226730659|sp|B1X6H0|RL4_ECODH RecName: Full=50S ribosomal protein L4 gi|226730660|sp|B7NDU0|RL4_ECOLU RecName: Full=50S ribosomal protein L4 gi|226730661|sp|B6I233|RL4_ECOSE RecName: Full=50S ribosomal protein L4 gi|226730662|sp|B1LHD3|RL4_ECOSM RecName: Full=50S ribosomal protein L4 gi|226730664|sp|B7LRT5|RL4_ESCF3 RecName: Full=50S ribosomal protein L4 gi|226730716|sp|B5F8F1|RL4_SALA4 RecName: Full=50S ribosomal protein L4 gi|226730717|sp|B5FJL3|RL4_SALDC RecName: Full=50S ribosomal protein L4 gi|226730718|sp|B5R290|RL4_SALEP RecName: Full=50S ribosomal protein L4 gi|226730719|sp|B5RH16|RL4_SALG2 RecName: Full=50S ribosomal protein L4 gi|226730720|sp|B4TKL4|RL4_SALHS RecName: Full=50S ribosomal protein L4 gi|226730721|sp|B4SUT9|RL4_SALNS RecName: Full=50S ribosomal protein L4 gi|226730722|sp|B5BGY5|RL4_SALPK RecName: Full=50S ribosomal protein L4 gi|226730723|sp|B4TXE1|RL4_SALSV RecName: Full=50S ribosomal protein L4 gi|226730726|sp|B2U2T7|RL4_SHIB3 RecName: Full=50S ribosomal protein L4 gi|254803733|sp|B7UK43|RL4_ECO27 RecName: Full=50S ribosomal protein L4 gi|254803734|sp|B7L4K8|RL4_ECO55 RecName: Full=50S ribosomal protein L4 gi|254803735|sp|B7N1A3|RL4_ECO81 RecName: Full=50S ribosomal protein L4 gi|254803751|sp|C0Q0B5|RL4_SALPC RecName: Full=50S ribosomal protein L4 gi|259491555|sp|C4ZUH4|RL4_ECOBW RecName: Full=50S ribosomal protein L4 gi|25294998|pir||AB1006 50S ribosomal chain protein L4 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|33357904|pdb|1P85|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome gi|33357932|pdb|1P86|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome gi|83754066|pdb|2AW4|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|83754122|pdb|2AWB|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666575|pdb|1VS6|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666627|pdb|1VS8|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138095|pdb|2I2T|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138149|pdb|2I2V|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|119390349|pdb|2J28|E Chain E, Model Of E. Coli Srp Bound To 70s Rncs gi|157836052|pdb|2QOV|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836104|pdb|2QOX|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836156|pdb|2QOZ|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836208|pdb|2QP1|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|158429727|pdb|2QAM|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429779|pdb|2QAO|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429837|pdb|2QBA|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429889|pdb|2QBC|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429941|pdb|2QBE|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429994|pdb|2QBG|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430047|pdb|2QBI|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430100|pdb|2QBK|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431400|pdb|2Z4L|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431453|pdb|2Z4N|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|168988735|pdb|2VHM|E Chain E, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) gi|168988766|pdb|2VHN|E Chain E, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) gi|169404607|pdb|2RDO|E Chain E, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound gi|197107305|pdb|3DF2|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|197107357|pdb|3DF4|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|209870358|pdb|3BBX|E Chain E, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex gi|224510763|pdb|3FIK|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. gi|256032399|pdb|3E1B|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre- Accommodation State gi|256032456|pdb|3E1D|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Post- Accommodation State gi|257097346|pdb|3I1N|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097398|pdb|3I1P|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097452|pdb|3I1R|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097506|pdb|3I1T|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097561|pdb|3I20|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097616|pdb|3I22|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|290560336|pdb|3KCR|E Chain E, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4 gi|294662254|pdb|2WWQ|E Chain E, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2). gi|308198359|pdb|1VT2|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|308198733|pdb|3ORB|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101. gi|308388011|pdb|3OFQ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|308388042|pdb|3OFR|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. gi|309320069|pdb|3OFC|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound. gi|309320100|pdb|3OFD|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|309320173|pdb|3OFZ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin. gi|309320204|pdb|3OG0|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|315113658|pdb|3OAS|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|315113689|pdb|3OAT|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound. gi|326634214|pdb|3IZT|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. gi|326634247|pdb|3IZU|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon gi|329666020|pdb|3J01|E Chain E, Structure Of The Ribosome-Secye Complex In The Membrane Environment gi|12517951|gb|AAG58440.1|AE005557_9 50S ribosomal subunit protein L4, regulates expression of S10 operon [Escherichia coli O157:H7 str. EDL933] gi|26110341|gb|AAN82527.1|AE016767_287 50S ribosomal protein L4 [Escherichia coli CFT073] gi|42828|emb|CAA26461.1| unnamed protein product [Escherichia coli] gi|606253|gb|AAA58116.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|1789715|gb|AAC76344.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|13363657|dbj|BAB37607.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Escherichia coli O157:H7 str. Sakai] gi|16421996|gb|AAL22302.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505150|emb|CAD08174.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhi] gi|29139969|gb|AAO71533.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129615|gb|AAV79121.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129576|gb|AAX67279.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73857315|gb|AAZ90022.1| 50S ribosomal subunit protein L4 [Shigella sonnei Ss046] gi|81242763|gb|ABB63473.1| 50S ribosomal subunit protein L4 [Shigella dysenteriae Sd197] gi|81247093|gb|ABB67801.1| 50S ribosomal subunit protein L4 [Shigella boydii Sb227] gi|85676722|dbj|BAE77972.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K12 substr. W3110] gi|91074329|gb|ABE09210.1| 50S ribosomal subunit protein L4 [Escherichia coli UTI89] gi|110345150|gb|ABG71387.1| 50S ribosomal protein L4 [Escherichia coli 536] gi|115514721|gb|ABJ02796.1| 50S ribosomal protein L4 [Escherichia coli APEC O1] gi|156530487|gb|ABU75313.1| hypothetical protein ESA_00004 [Cronobacter sakazakii ATCC BAA-894] gi|157068473|gb|ABV07728.1| ribosomal protein L4 [Escherichia coli HS] gi|157078119|gb|ABV17827.1| ribosomal protein L4 [Escherichia coli E24377A] gi|157086104|gb|ABV15782.1| hypothetical protein CKO_04737 [Citrobacter koseri ATCC BAA-895] gi|160867354|gb|ABX23977.1| hypothetical protein SARI_04188 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|169753373|gb|ACA76072.1| ribosomal protein L4/L1e [Escherichia coli ATCC 8739] gi|169890673|gb|ACB04380.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. DH10B] gi|170121604|gb|EDS90535.1| ribosomal protein L4 [Escherichia albertii TW07627] gi|170517356|gb|ACB15534.1| ribosomal protein L4 [Escherichia coli SMS-3-5] gi|187429949|gb|ACD09223.1| ribosomal protein L4 [Shigella boydii CDC 3083-94] gi|187766785|gb|EDU30629.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196] gi|188013517|gb|EDU51639.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113] gi|188488294|gb|EDU63397.1| ribosomal protein L4 [Escherichia coli 53638] gi|188998466|gb|EDU67464.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076] gi|189359198|gb|EDU77617.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401] gi|189361739|gb|EDU80158.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486] gi|189374367|gb|EDU92783.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869] gi|194404489|gb|ACF64711.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405929|gb|ACF66148.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194416295|gb|EDX32499.1| ribosomal protein L4 [Shigella dysenteriae 1012] gi|194458751|gb|EDX47590.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712014|gb|ACF91235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628920|gb|EDX48330.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095765|emb|CAR61335.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212604|gb|ACH50001.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240416|gb|EDY23036.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938244|gb|ACH75577.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603649|gb|EDZ02194.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274714|emb|CAR39770.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205350182|gb|EDZ36813.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710484|emb|CAR34842.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208725425|gb|EDZ75026.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206] gi|208735183|gb|EDZ83870.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045] gi|208739965|gb|EDZ87647.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042] gi|209159951|gb|ACI37384.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115] gi|209757048|gb|ACI76836.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757050|gb|ACI76837.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757052|gb|ACI76838.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757054|gb|ACI76839.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757056|gb|ACI76840.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209914044|dbj|BAG79118.1| 50S ribosomal protein L4 [Escherichia coli SE11] gi|215266691|emb|CAS11130.1| 50S ribosomal subunit protein L4 [Escherichia coli O127:H6 str. E2348/69] gi|217322658|gb|EEC31082.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588] gi|218353743|emb|CAV00036.1| 50S ribosomal subunit protein L4 [Escherichia coli 55989] gi|218358135|emb|CAQ90782.1| 50S ribosomal subunit protein L4 [Escherichia fergusonii ATCC 35469] gi|218362644|emb|CAR00270.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI1] gi|218367149|emb|CAR04923.1| 50S ribosomal subunit protein L4 [Escherichia coli S88] gi|218372067|emb|CAR19927.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI39] gi|218429169|emb|CAR10121.2| 50S ribosomal subunit protein L4 [Escherichia coli ED1a] gi|218434023|emb|CAR14940.1| 50S ribosomal subunit protein L4 [Escherichia coli UMN026] gi|222035028|emb|CAP77771.1| 50S ribosomal protein L4 [Escherichia coli LF82] gi|224469762|gb|ACN47592.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226902313|gb|EEH88572.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA] gi|227839594|gb|EEJ50060.1| 50S ribosomal protein L4 [Escherichia coli 83972] gi|238859876|gb|ACR61874.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952] gi|242378846|emb|CAQ33638.1| 50S ribosomal subunit protein L4, subunit of 50S ribosomal subunit and ribosome [Escherichia coli BL21(DE3)] gi|253322901|gb|ACT27503.1| ribosomal protein L4/L1e [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975148|gb|ACT40819.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606] gi|253979304|gb|ACT44974.1| 50S ribosomal protein L4 [Escherichia coli BL21(DE3)] gi|254594656|gb|ACT74017.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. TW14359] gi|257756089|dbj|BAI27591.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str. 11368] gi|257761264|dbj|BAI32761.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str. 12009] gi|257766418|dbj|BAI37913.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str. 11128] gi|260218815|emb|CBA34170.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032] gi|260447662|gb|ACX38084.1| ribosomal protein L4/L1e [Escherichia coli DH1] gi|261248595|emb|CBG26433.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995648|gb|ACY90533.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180354|dbj|BAI56684.1| 50S ribosomal protein L4 [Escherichia coli SE15] gi|282951499|emb|CBG91198.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168] gi|284923325|emb|CBG36419.1| 50S ribosomal subunit protein L4 [Escherichia coli 042] gi|290764550|gb|ADD58511.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615] gi|291068415|gb|EFE06524.1| ribosomal protein L4/L1 family protein [Citrobacter youngae ATCC 29220] gi|291321763|gb|EFE61194.1| 50S ribosomal protein L4/L1 [Escherichia coli B088] gi|291425727|gb|EFE98761.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412] gi|291431312|gb|EFF04297.1| 50S ribosomal protein L4/L1 [Escherichia coli B185] gi|291468385|gb|EFF10878.1| 50S ribosomal protein L4/L1 [Escherichia coli B354] gi|294490448|gb|ADE89204.1| ribosomal protein L4 [Escherichia coli IHE3034] gi|295096960|emb|CBK86050.1| LSU ribosomal protein L4P [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298276492|gb|EFI18010.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302] gi|299881661|gb|EFI89872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1] gi|300301916|gb|EFJ58301.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1] gi|300309008|gb|EFJ63528.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1] gi|300318235|gb|EFJ68019.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1] gi|300359498|gb|EFJ75368.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1] gi|300399527|gb|EFJ83065.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1] gi|300404440|gb|EFJ87978.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1] gi|300409401|gb|EFJ92939.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1] gi|300414553|gb|EFJ97863.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1] gi|300421720|gb|EFK05031.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1] gi|300453787|gb|EFK17407.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1] gi|300459473|gb|EFK22966.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1] gi|300460036|gb|EFK23529.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1] gi|300524644|gb|EFK45713.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7] gi|300532363|gb|EFK53425.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1] gi|300839223|gb|EFK66983.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1] gi|300847993|gb|EFK75753.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1] gi|301077764|gb|EFK92570.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1] gi|301159982|emb|CBW19501.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305850734|gb|EFM51191.1| 50S ribosomal protein L4 [Escherichia coli NC101] gi|306905451|gb|EFN35986.1| ribosomal protein L4/L1e [Escherichia coli W] gi|307555406|gb|ADN48181.1| 50S ribosomal subunit protein L4 [Escherichia coli ABU 83972] gi|307628354|gb|ADN72658.1| 50S ribosomal protein L4 [Escherichia coli UM146] gi|308121644|gb|EFO58906.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7] gi|308746921|gb|ADO46673.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1] gi|308926761|gb|EFP72237.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617] gi|309703731|emb|CBJ03072.1| 50S ribosomal subunit protein L4 [Escherichia coli ETEC H10407] gi|310334797|gb|EFQ01002.1| 50S ribosomal protein L4 [Escherichia coli 1827-70] gi|312287181|gb|EFR15091.1| 50S ribosomal protein L4 [Escherichia coli 2362-75] gi|312914462|dbj|BAJ38436.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312947870|gb|ADR28697.1| 50S ribosomal protein L4 [Escherichia coli O83:H1 str. NRG 857C] gi|315062611|gb|ADT76938.1| 50S ribosomal subunit protein L4 [Escherichia coli W] gi|315137894|dbj|BAJ45053.1| 50S ribosomal protein L4 [Escherichia coli DH1] gi|315255902|gb|EFU35870.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 85-1] gi|315284606|gb|EFU44051.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 110-3] gi|315292364|gb|EFU51716.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 153-1] gi|315298617|gb|EFU57872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 16-3] gi|315616996|gb|EFU97608.1| 50S ribosomal protein L4 [Escherichia coli 3431] gi|320087884|emb|CBY97647.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320173960|gb|EFW49136.1| LSU ribosomal protein L4p (L1e) [Shigella dysenteriae CDC 74-1112] gi|320180153|gb|EFW55092.1| LSU ribosomal protein L4p (L1e) [Shigella boydii ATCC 9905] gi|320187037|gb|EFW61749.1| LSU ribosomal protein L4p (L1e) [Shigella flexneri CDC 796-83] gi|320191650|gb|EFW66300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str. EC1212] gi|320199503|gb|EFW74093.1| LSU ribosomal protein L4p (L1e) [Escherichia coli EC4100B] gi|320639624|gb|EFX09218.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. G5101] gi|320645122|gb|EFX14138.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. 493-89] gi|320650433|gb|EFX18899.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. H 2687] gi|320655958|gb|EFX23878.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661410|gb|EFX28825.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. USDA 5905] gi|320666432|gb|EFX33415.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. LSU-61] gi|321226486|gb|EFX51536.1| LSU ribosomal protein L4p (L1e) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615020|gb|EFY11944.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617307|gb|EFY14208.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625529|gb|EFY22354.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626371|gb|EFY23180.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632117|gb|EFY28870.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635004|gb|EFY31727.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643295|gb|EFY39862.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646621|gb|EFY43128.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649967|gb|EFY46386.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652684|gb|EFY49024.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659559|gb|EFY55803.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665499|gb|EFY61686.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670393|gb|EFY66532.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670466|gb|EFY66600.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675042|gb|EFY71125.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681579|gb|EFY77608.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685923|gb|EFY81912.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716430|gb|EFZ08001.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131797|gb|ADX19227.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323154157|gb|EFZ40360.1| 50S ribosomal protein L4 [Escherichia coli EPECa14] gi|323162998|gb|EFZ48833.1| 50S ribosomal protein L4 [Escherichia coli E128010] gi|323173955|gb|EFZ59583.1| 50S ribosomal protein L4 [Escherichia coli LT-68] gi|323179145|gb|EFZ64719.1| 50S ribosomal protein L4 [Escherichia coli 1180] gi|323182797|gb|EFZ68198.1| 50S ribosomal protein L4 [Escherichia coli 1357] gi|323194031|gb|EFZ79231.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196451|gb|EFZ81602.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202310|gb|EFZ87355.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207341|gb|EFZ92291.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211223|gb|EFZ96068.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216068|gb|EGA00799.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223441|gb|EGA07769.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226829|gb|EGA11019.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231809|gb|EGA15919.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233238|gb|EGA17333.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237305|gb|EGA21370.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245540|gb|EGA29539.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249046|gb|EGA32968.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250669|gb|EGA34550.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256898|gb|EGA40612.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263047|gb|EGA46594.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266047|gb|EGA49542.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272804|gb|EGA56207.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376802|gb|ADX49070.1| ribosomal protein L4/L1e [Escherichia coli KO11] gi|323934483|gb|EGB30891.1| ribosomal protein L4/L1 family protein [Escherichia coli E1520] gi|323939259|gb|EGB35471.1| ribosomal protein L4/L1 family protein [Escherichia coli E482] gi|323944260|gb|EGB40336.1| ribosomal protein L4/L1 family protein [Escherichia coli H120] gi|323950233|gb|EGB46115.1| ribosomal protein L4/L1 family protein [Escherichia coli H252] gi|323954558|gb|EGB50341.1| ribosomal protein L4/L1 family protein [Escherichia coli H263] gi|323959530|gb|EGB55183.1| ribosomal protein L4/L1 family protein [Escherichia coli H489] gi|323966281|gb|EGB61716.1| ribosomal protein L4/L1 family protein [Escherichia coli M863] gi|323970123|gb|EGB65397.1| ribosomal protein L4/L1 family protein [Escherichia coli TA007] gi|323974728|gb|EGB69841.1| ribosomal protein L4/L1 family protein [Escherichia coli TW10509] gi|324009010|gb|EGB78229.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 57-2] gi|324014935|gb|EGB84154.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 60-1] gi|324017863|gb|EGB87082.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 117-3] gi|324111998|gb|EGC05977.1| ribosomal protein L4/L1 family protein [Escherichia fergusonii B253] gi|324116291|gb|EGC10211.1| ribosomal protein L4/L1 family protein [Escherichia coli E1167] gi|325498884|gb|EGC96743.1| 50S ribosomal protein L4 [Escherichia fergusonii ECD227] gi|326344551|gb|EGD68300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str. 1125] gi|326625182|gb|EGE31527.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630082|gb|EGE36425.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327250967|gb|EGE62660.1| 50S ribosomal protein L4 [Escherichia coli STEC_7v] gi|330909361|gb|EGH37875.1| LSU ribosomal protein L4p (L1e) [Escherichia coli AA86] gi|331036309|gb|EGI08535.1| ribosomal protein L4/L1 family protein [Escherichia coli H736] gi|331041614|gb|EGI13758.1| ribosomal protein L4/L1 family protein [Escherichia coli M605] gi|331046927|gb|EGI19005.1| ribosomal protein L4/L1 family protein [Escherichia coli M718] gi|331052824|gb|EGI24857.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206] gi|331057442|gb|EGI29428.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143] gi|331062210|gb|EGI34130.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271] gi|331067730|gb|EGI39128.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280] gi|331072560|gb|EGI43885.1| ribosomal protein L4/L1 family protein [Escherichia coli H591] gi|331077332|gb|EGI48544.1| ribosomal protein L4/L1 family protein [Escherichia coli H299] gi|332085470|gb|EGI90636.1| 50S ribosomal protein L4 [Shigella boydii 5216-82] gi|332085827|gb|EGI90991.1| 50S ribosomal protein L4 [Shigella dysenteriae 155-74] gi|332090535|gb|EGI95633.1| 50S ribosomal protein L4 [Shigella boydii 3594-74] gi|332104226|gb|EGJ07572.1| 50S ribosomal subunit protein L4 [Shigella sp. D9] gi|223250|prf||0701225A ribosomal protein L4 Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|209521384|ref|ZP_03270097.1| ribosomal protein L4/L1e [Burkholderia sp. H160] gi|295677931|ref|YP_003606455.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002] gi|307731254|ref|YP_003908478.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1003] gi|323527601|ref|YP_004229754.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1001] gi|209498204|gb|EDZ98346.1| ribosomal protein L4/L1e [Burkholderia sp. H160] gi|295437774|gb|ADG16944.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002] gi|307585789|gb|ADN59187.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1003] gi|323384603|gb|ADX56694.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1001] Length = 206 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ +S S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEE 203 >gi|89095537|ref|ZP_01168442.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92] gi|89080212|gb|EAR59479.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 2/199 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G KG + VS+ F + + ++ +V+ R G K RS V+ G+K + Q Sbjct: 4 NLAGA-KGSVEVSDLAFGKEFNETLVHQVVTAYLAGGRQGTKAQKNRSAVSGGGAKPWRQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + KK+ A+R S+ ++V++ Sbjct: 63 KGTGRARAGTSRSPIWRAGGVTFAAQPRDHSQKVNKKMFRAAMRCIFSELVRQERLVVVE 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK V + L+L+NAL+I ++++N LAARN+P++++ G++ ++ Sbjct: 123 EFAVESPKTKQFVAKLNELELNNALLIT-EEVEQNLYLAARNVPHVDVRDASGVDPVSLV 181 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ +A++ +E++ Sbjct: 182 GFDKVLVTVAALKKIEEKL 200 >gi|261866794|ref|YP_003254716.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D11S-1] gi|2500232|sp|P55836|RL4_ACTAC RecName: Full=50S ribosomal protein L4 gi|1841323|dbj|BAA10948.1| ribosomal protein L4 [Actinobacillus actinomycetemcomitans] gi|261412126|gb|ACX81497.1| ribosomal protein L4/L1 family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 200 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V+D KT Sbjct: 71 DIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVDKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L + LII LD N LAARN+ +++ QGI+ ++ K+V++ Sbjct: 131 KVLVQKLKELALEDVLIITAS-LDENLFLAARNLYKVDVRDAQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|51598733|ref|YP_072921.1| 50S ribosomal protein L4 [Borrelia garinii PBi] gi|81609968|sp|Q661E2|RL4_BORGA RecName: Full=50S ribosomal protein L4 gi|51573304|gb|AAU07329.1| ribosomal protein L4 [Borrelia garinii PBi] Length = 209 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|262045176|ref|ZP_06018203.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037496|gb|EEW38740.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+E+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTTDAVKQVEE 198 >gi|237806876|ref|YP_002891316.1| 50S ribosomal protein L4 [Tolumonas auensis DSM 9187] gi|259491579|sp|C4L7T1|RL4_TOLAT RecName: Full=50S ribosomal protein L4 gi|237499137|gb|ACQ91730.1| ribosomal protein L4/L1e [Tolumonas auensis DSM 9187] Length = 201 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + + ++ +V+ + R G K RSEV+ G K + QKGTGRA Sbjct: 9 QSALQVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +RGGG F P + +K+ A++ LS+ + ++V++ Sbjct: 69 RAGTIRSPIWRGGGVTFAAKPQDHSQKVNRKMYRGAIQSILSELVRQDRLVVVEKFGVDA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L+T+ +ALDL + LI+ +++ N LAARN+ +++ V GI+ ++ K++ Sbjct: 129 PKTKELLTKLQALDLKDVLIVT-PEVEENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQIEE 198 >gi|186477587|ref|YP_001859057.1| 50S ribosomal protein L4 [Burkholderia phymatum STM815] gi|226730631|sp|B2JIG5|RL4_BURP8 RecName: Full=50S ribosomal protein L4 gi|184194046|gb|ACC72011.1| ribosomal protein L4/L1e [Burkholderia phymatum STM815] Length = 206 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAAVNASDVVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRIAVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEE 203 >gi|34499640|ref|NP_903855.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472] gi|46577180|sp|Q7NQF3|RL4_CHRVO RecName: Full=50S ribosomal protein L4 gi|34105490|gb|AAQ61845.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472] Length = 206 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V N G+ G + VS+ +F + + ++ +V+ R G R+EV ++ Sbjct: 1 MELNVINTQGKAVGSLQVSDALFGREYNEALVHQVVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S RGGG+AF P + +K+ + LS Sbjct: 61 KKPFRQKGTGNARAGMTSTPNRRGGGRAFPNKPDENFTQKVNRKMYRAGIATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L KTK V + + L AL I +L N L++RN+PN+ ++ Sbjct: 121 ERLIVVDDLSVASPKTKEFVGAVQPMGLEQALFITN-ELSENLYLSSRNLPNMLVIEAVQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K V+++ A++ LE+++ Sbjct: 180 ADPYSLLRFKKTVITRDAVKQLEEQW 205 >gi|300721366|ref|YP_003710637.1| 50S ribosomal subunit protein L4 [Xenorhabdus nematophila ATCC 19061] gi|297627854|emb|CBJ88400.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Xenorhabdus nematophila ATCC 19061] Length = 201 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LI+ G ++D N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKEMALEDVLIVTG-EVDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTAEAVKQVEE 198 >gi|300690161|ref|YP_003751156.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum PSI07] gi|299077221|emb|CBJ49847.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum PSI07] Length = 206 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ +S S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMGLDSVLVITD-NLDENLYLASRNLAHVLVVEARH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|291619174|ref|YP_003521916.1| RplD [Pantoea ananatis LMG 20103] gi|291154204|gb|ADD78788.1| RplD [Pantoea ananatis LMG 20103] gi|327395505|dbj|BAK12927.1| 50S ribosomal protein L4 RplD [Pantoea ananatis AJ13355] Length = 201 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|219117581|ref|XP_002179583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408636|gb|EEC48569.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 184 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVR 106 +K+K SEV+ +G K+ QKGTG AR FRGG KA GP V G L KKVR Sbjct: 4 AKTKTISEVSGSGRKIRNQKGTGMARAGHSRPPHFRGGAKAHGPKNVTDYGNTKLNKKVR 63 Query: 107 SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF------RALDLSNALIIDGC--- 157 LAL HALS K +++++++L +TRF D + ALI+D Sbjct: 64 KLALVHALSQKLLEGNLIILNSLKELPSHKTKELTRFLEPWDIGGKDGATALILDAYISE 123 Query: 158 ---------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + N +A+ NI I + VYDIL+ KLVL+ +A+E LEDR + Sbjct: 124 EEGQPQSYKGVPMNLWVASSNIYRIKVGNHLAACVYDILKHEKLVLTLAALEKLEDRLR 182 >gi|152972226|ref|YP_001337372.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578232|ref|YP_002236282.1| ribosomal protein L4 [Klebsiella pneumoniae 342] gi|238896815|ref|YP_002921560.1| 50S ribosomal protein L4 [Klebsiella pneumoniae NTUH-K2044] gi|288933267|ref|YP_003437326.1| ribosomal protein L4/L1e [Klebsiella variicola At-22] gi|290512070|ref|ZP_06551438.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55] gi|330002293|ref|ZP_08304287.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3] gi|166234677|sp|A6TEX1|RL4_KLEP7 RecName: Full=50S ribosomal protein L4 gi|226730676|sp|B5XN95|RL4_KLEP3 RecName: Full=50S ribosomal protein L4 gi|150957075|gb|ABR79105.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567290|gb|ACI09066.1| ribosomal protein L4 [Klebsiella pneumoniae 342] gi|238549142|dbj|BAH65493.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288887996|gb|ADC56314.1| ribosomal protein L4/L1e [Klebsiella variicola At-22] gi|289775860|gb|EFD83860.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55] gi|328537366|gb|EGF63616.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3] Length = 201 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+E+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|17547737|ref|NP_521139.1| 50S ribosomal protein L4 [Ralstonia solanacearum GMI1000] gi|46577281|sp|Q8XV13|RL4_RALSO RecName: Full=50S ribosomal protein L4 gi|17430042|emb|CAD16727.1| probable 50s ribosomal protein l4 [Ralstonia solanacearum GMI1000] gi|299065416|emb|CBJ36585.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum CMR15] Length = 206 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ +S S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D+L KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMGLDSVLVITD-NLDENLFLASRNLAHVLVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|293393310|ref|ZP_06637624.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582] gi|291424220|gb|EFE97435.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582] Length = 201 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|119953268|ref|YP_945477.1| 50S ribosomal protein L4 [Borrelia turicatae 91E135] gi|119862039|gb|AAX17807.1| LSU ribosomal protein L1E [Borrelia turicatae 91E135] Length = 222 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 12/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ E +F + G + + + R+G + +K RSEV + Sbjct: 14 MERKVFSKDGQELRTINLEEGVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA R LS Sbjct: 74 KKPWKQKGTGRARVGTKRNPVWVGGGVALGPKPRDYSYKLPKKVKRLAFRSVLSLCVSVE 133 Query: 122 D-IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL------DRNFQLAARNIPNIN 174 D + +++N + KTK L AL + N + I+G + D+ + A +NI ++ Sbjct: 134 DRLKIVENFTIESGKTKDL-----ALIMKNFIKINGKTVILLGNDDQMVKRAGKNIRDLK 188 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + V D+ L+ +SAI L + + Sbjct: 189 ILSFNRLRVVDLFYAKNLIALESAINGLNELY 220 >gi|121591696|ref|ZP_01678925.1| ribosomal protein L4 [Vibrio cholerae 2740-80] gi|121546447|gb|EAX56677.1| ribosomal protein L4 [Vibrio cholerae 2740-80] Length = 176 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G K RSEV+ G+K + QKGTGRAR + +R GG F P + KK Sbjct: 15 RQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKK 74 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + A++ LS+ ++V++N + KTK LV + + L+L++ LI+ G ++D N Sbjct: 75 MYRGAMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLF 133 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 LAARN+ +++ V GI+ ++ K++++ +A++ +E+ Sbjct: 134 LAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEE 173 >gi|315283851|ref|ZP_07871907.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120] gi|313612505|gb|EFR86591.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120] Length = 126 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 69/117 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSK 117 >gi|49089074|gb|AAT51638.1| PA4262 [synthetic construct] Length = 201 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 3/189 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VSE F + + ++ + + R G K RSEV+ G K + QKGTGRAR Sbjct: 11 IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F P L KK+ ALR L++ + ++V+ + KT Sbjct: 71 TIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVVADFAVDAPKT 130 Query: 137 KYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K LV + L L + LI+ DG +D N LAARN+ ++++ VQG ++ ++ K++++ Sbjct: 131 KGLVAKLDTLGLKDVLIVTDG--VDENLYLAARNLAHVDVRDVQGSDLVSLIAYDKVLVT 188 Query: 196 KSAIEALED 204 SA++ E+ Sbjct: 189 VSAVKKFEE 197 >gi|50122950|ref|YP_052117.1| 50S ribosomal protein L4 [Pectobacterium atrosepticum SCRI1043] gi|81643768|sp|Q6CZX1|RL4_ERWCT RecName: Full=50S ribosomal protein L4 gi|49613476|emb|CAG76927.1| 50S ribosomal subunit protein L4 [Pectobacterium atrosepticum SCRI1043] Length = 201 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSLEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +LD N LAARN+ +++ I+ ++ K+V Sbjct: 129 PKTKLLVEKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|282857361|ref|ZP_06266598.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455] gi|282584861|gb|EFB90192.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455] Length = 207 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 3/207 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N+ GE G ++S+++F + +V+ Q R G + +K R EV Sbjct: 1 MPVIKIMNISGEVVGEKTLSDEVFGASVHVSAMHQVVVAQLAHARQGTASTKMRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG GP P + KKVR+LA+R ALS + Sbjct: 61 GKKPWKQKHTGRARAGSSRSPLWVGGGVVHGPKPRSYDLKVNKKVRALAMRSALSMRVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++N + TK + +L L ++D Q D N +A NIP +L V Sbjct: 121 QSLCAVENFGFEAPSTKKMKGFIDSLKAKKILFLLD--QRDENVVRSASNIPGAKVLHVD 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ +V + + +E LE+ + Sbjct: 179 SINVLDLVHHDHVVATPAVLEKLEEVY 205 >gi|329901063|ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium IMCC9480] gi|327549263|gb|EGF33841.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 1/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G SK K R EV +T Sbjct: 1 MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ + + KTK L ++ + + L +++I +D N LA+RN+P++ ++ + Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++K+A+ +E+ Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEE 204 >gi|323189076|gb|EFZ74360.1| 50S ribosomal protein L4 [Escherichia coli RN587/1] Length = 201 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTVDAVKQVEE 198 >gi|290477191|ref|YP_003470106.1| 50S ribosomal subunit protein L4 [Xenorhabdus bovienii SS-2004] gi|289176539|emb|CBJ83348.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Xenorhabdus bovienii SS-2004] Length = 201 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ ++V++ + Sbjct: 69 RAGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQERLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LI+ G ++D N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVQKLKEMALQDVLIVTG-EVDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|312880371|ref|ZP_07740171.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260] gi|310783662|gb|EFQ24060.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260] Length = 208 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 94/199 (47%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 N G+ G +S+ +F+ + +V+ R+G +K R EV G K + Q Sbjct: 8 NFQGDVIGEFELSDAVFSAPVHAPAMHQVVVAHLANCRLGTHDTKDRGEVRGGGRKPWRQ 67 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 K TGRAR S + GGG A GP P + KKVR LALR AL+ K ++V+D Sbjct: 68 KHTGRARQGSTRSPIWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAQEEVLLVLD 127 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK ++ + ++ + D +A NIP +L V +NVYD+L Sbjct: 128 RFDLDAPKTKAMLAFLGKVQSGKKPLLVTHESDPRVHKSAANIPGAAVLHVDSLNVYDLL 187 Query: 188 RCSKLVLSKSAIEALEDRF 206 +L+++ A +E+ F Sbjct: 188 HHDQLIVTAEAARKIEEVF 206 >gi|171700382|gb|ACB53363.1| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142] Length = 188 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R+EV G K + QKGTGRAR S +RGGG FGP P + +K Sbjct: 23 RQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRK 82 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQL 159 R LALR A+ + D++V++N + + KTK L +TR+ ++ + + + + Sbjct: 83 ERRLALRTAIGSRV--EDMIVVENFAEQLPQPKTKELASALTRW-GVEPTQKVALVLVET 139 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 D N L+ARN+ ++ +L +NVYD+L K+V++ AI +++ + Sbjct: 140 DANIYLSARNLCHVKILRADSLNVYDLLDADKIVITSEAISKIQEVY 186 >gi|261346934|ref|ZP_05974578.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM 4541] gi|282564999|gb|EFB70534.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM 4541] Length = 201 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGSAKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|288803934|ref|ZP_06409357.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica D18] gi|288333567|gb|EFC72019.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica D18] Length = 209 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGSGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDE 205 >gi|56707479|ref|YP_169375.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89255671|ref|YP_513032.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica LVS] gi|110669950|ref|YP_666507.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC198] gi|115314172|ref|YP_762895.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica OSU18] gi|118496853|ref|YP_897903.1| 50S ribosomal protein L4 [Francisella tularensis subsp. novicida U112] gi|134302584|ref|YP_001122555.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis WY96-3418] gi|156501621|ref|YP_001427686.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009888|ref|ZP_02274819.1| ribosomal protein L4/L1 family [Francisella tularensis subsp. holarctica FSC200] gi|254370828|ref|ZP_04986833.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC033] gi|290953210|ref|ZP_06557831.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica URFT1] gi|295313578|ref|ZP_06804167.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica URFT1] gi|81597928|sp|Q5NHW7|RL4_FRATT RecName: Full=50S ribosomal protein L4 gi|109893596|sp|Q2A5G9|RL4_FRATH RecName: Full=50S ribosomal protein L4 gi|122325786|sp|Q0BNS6|RL4_FRATO RecName: Full=50S ribosomal protein L4 gi|123063580|sp|Q14JB9|RL4_FRAT1 RecName: Full=50S ribosomal protein L4 gi|166234667|sp|A7N9S7|RL4_FRATF RecName: Full=50S ribosomal protein L4 gi|166234668|sp|A0Q4I4|RL4_FRATN RecName: Full=50S ribosomal protein L4 gi|166234669|sp|A4IZT3|RL4_FRATW RecName: Full=50S ribosomal protein L4 gi|56603971|emb|CAG44959.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89143502|emb|CAJ78678.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica LVS] gi|110320283|emb|CAL08342.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC198] gi|115129071|gb|ABI82258.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica OSU18] gi|118422759|gb|ABK89149.1| 50S ribosomal protein L4 [Francisella novicida U112] gi|134050361|gb|ABO47432.1| ribosomal protein L4 [Francisella tularensis subsp. tularensis WY96-3418] gi|151569071|gb|EDN34725.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC033] gi|156252224|gb|ABU60730.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|282158623|gb|ADA78014.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis NE061598] gi|328676322|gb|AEB27192.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida Fx1] Length = 207 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|91774636|ref|YP_544392.1| 50S ribosomal protein L4P [Methylobacillus flagellatus KT] gi|122400330|sp|Q1H4N6|RL4_METFK RecName: Full=50S ribosomal protein L4 gi|91708623|gb|ABE48551.1| LSU ribosomal protein L4P [Methylobacillus flagellatus KT] Length = 208 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K ++VSE F + + ++ +V+ R R+EV++T K + QKGTGRA Sbjct: 14 KAGLAVSEATFGREFNEALVHQVVVAYQANARTATRAQLTRAEVSHTTKKPWNQKGTGRA 73 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 R S + +RGGG+AF P H + +K +R LS+ + + ++ Sbjct: 74 RAGMSSSTIWRGGGRAFPNTPDENFSHKINRKAYRAGVRSILSELVRQDRLSAVEEFAVD 133 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK LV + + L + L++ + D N L+ARN+P++ +L Q ++ ++R ++ Sbjct: 134 TPKTKQLVEKIKGLGYNEGLLVLVDKFDENLYLSARNLPHVLVLEAQYVDPVSLVRFPQV 193 Query: 193 VLSKSAIEALED 204 + + A++ LE+ Sbjct: 194 LATAGAVKKLEE 205 >gi|92112555|ref|YP_572483.1| 50S ribosomal protein L4P [Chromohalobacter salexigens DSM 3043] gi|122420788|sp|Q1R0H4|RL4_CHRSD RecName: Full=50S ribosomal protein L4 gi|91795645|gb|ABE57784.1| LSU ribosomal protein L4P [Chromohalobacter salexigens DSM 3043] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G D G + VS+ F + + ++ +V+ R G K RSEV G K + Q Sbjct: 4 NLAGADAGTVEVSDATFGKEFNESLVHQVVTAYFAAGRQGTRAQKTRSEVRGGGKKPWRQ 63 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R LS+ ++V+D Sbjct: 64 KGTGRARAGTIRSPLWRSGGVTFAARPQDYTQKVNRKMYRAAMRSILSELVRQERLVVVD 123 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK LV + + LDL ALI+ +D LAARNIP ++++ V + ++ Sbjct: 124 SFEVDAPKTKQLVAKLKDLDLEKALIVT-EDIDEKLFLAARNIPYVDVVDVAAADPVSLV 182 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ SA+ E++ Sbjct: 183 AFDKVLVTVSALRKFEEKL 201 >gi|15644247|ref|NP_229299.1| 50S ribosomal protein L4 [Thermotoga maritima MSB8] gi|6226692|sp|P38516|RL4_THEMA RecName: Full=50S ribosomal protein L4; AltName: Full=TmaL4 gi|4982063|gb|AAD36565.1|AE001798_30 ribosomal protein L4 [Thermotoga maritima MSB8] Length = 235 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 19/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLD--RNFQLAARNIPNINLL 176 N ++V+D+L + KTK L + L LS+ LI+ + + N +L+ RN+P++ ++ Sbjct: 121 NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVI 180 Query: 177 ----P-----------VQGINVYDILRCSKLVLSKSAIEALED 204 P + G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEE 223 >gi|166368483|ref|YP_001660756.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843] gi|189029509|sp|B0JI02|RL4_MICAN RecName: Full=50S ribosomal protein L4 gi|159028205|emb|CAO89812.1| rplD [Microcystis aeruginosa PCC 7806] gi|166090856|dbj|BAG05564.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843] Length = 210 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 115/213 (53%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ +V+N GE+ G ++ ++ KP+ ++ RV+ R G + SK RSEV Sbjct: 1 MVNYTVKNWQGEEAGTGTL--ELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVR 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S +RGGG FGP P + +K + LALR AL + Sbjct: 59 GGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQ- 117 Query: 119 CSNDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 +++ +V+++ + + KTK L ++R+ A L+I ++ N L+ RNI N+ Sbjct: 118 -ADNFIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLIL-TEIPENVYLSGRNICNL 175 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NVYD++ +++ + +A+ +E+ + Sbjct: 176 KIIRADSLNVYDVILADRVIATAAALAKIEEVY 208 >gi|292489848|ref|YP_003532738.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430] gi|292900890|ref|YP_003540259.1| 50S ribosomal protein L4 [Erwinia amylovora ATCC 49946] gi|291200738|emb|CBJ47871.1| 50S ribosomal subunit protein L4 [Erwinia amylovora ATCC 49946] gi|291555285|emb|CBA23587.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430] gi|312174030|emb|CBX82283.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora ATCC BAA-2158] Length = 201 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSLEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +L N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVEKLKDMALEDVLIITG-ELQENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|51209942|ref|YP_063606.1| ribosomal protein L4 [Gracilaria tenuistipitata var. liui] gi|68052933|sp|Q6B8V4|RK4_GRATL RecName: Full=50S ribosomal protein L4, chloroplastic gi|50657696|gb|AAT79681.1| 50S ribosomal protein L4 [Gracilaria tenuistipitata var. liui] Length = 217 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R L Q R + ++ R EV+ G K + QKGTGRAR S +RGGG FG Sbjct: 39 ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFG 98 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFRA--LD 147 P V+ + KK + LALR +++KF + +V +N +SK TK LV + LD Sbjct: 99 PRHKKYVNKINKKEKQLALRILINNKFK--NTIVTENFISKISTPNTKILVNNLKKYNLD 156 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N ++I + + L+ RN+ N+ LL +N+ +L+ + ++++K A++ + + Sbjct: 157 TNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIVSLLKANHIIINKDALDIINKMY 215 >gi|297537532|ref|YP_003673301.1| 50S ribosomal protein L4/L1e [Methylotenera sp. 301] gi|297256879|gb|ADI28724.1| ribosomal protein L4/L1e [Methylotenera sp. 301] Length = 208 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL +++ +G+ K ++VS+D F + + ++ +V+ R KGR VA+T Sbjct: 1 MELKLQDKNGKAVKAGVTVSDDTFGREFNEALVHQVVVAYMANARTATRAQKGRGNVAHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K Y QKGTG AR S +RGGG+AF P+ H + +K ++ LS+ Sbjct: 61 THKPYAQKGTGNARAGMTSSPIWRGGGRAFPSSPLENFSHKINRKAYRAGMQTILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ V KTK + + L +++ D N L++RN+ N+ ++ Q Sbjct: 121 QERLNVVEEFVVATPKTKAFAEKIKNLGFEGGVLVLTDGFDENLYLSSRNLINVMVVEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + ++R +V + +A++ LE+ Sbjct: 181 FADPVSLVRFPNVVATVAAVKKLEE 205 >gi|261823231|ref|YP_003261337.1| 50S ribosomal protein L4 [Pectobacterium wasabiae WPP163] gi|261607244|gb|ACX89730.1| ribosomal protein L4/L1e [Pectobacterium wasabiae WPP163] Length = 201 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVETFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ I+ ++ K+V Sbjct: 129 PKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|18311386|ref|NP_563320.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13] gi|18146070|dbj|BAB82110.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13] Length = 175 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 3/174 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 D++V+++L + KTK V A + LII +++ N +ARNI N Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIRRCN 171 >gi|255326843|ref|ZP_05367919.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC 25296] gi|283457544|ref|YP_003362127.1| 50S ribosomal protein L4 [Rothia mucilaginosa DY-18] gi|255296060|gb|EET75401.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC 25296] gi|283133542|dbj|BAI64307.1| ribosomal protein L4 [Rothia mucilaginosa DY-18] Length = 205 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 1/181 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF + +L +V+ Q R G K+K R EV+ G K + QKGTG AR Sbjct: 8 VDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-K 135 S GGG GP P PKK+ + ALR ALSD+ + + V++N +S E Sbjct: 68 SIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRVHVVENFISGETPS 127 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK F A+ +++ + + L+ARN+ N+++L +N YD+L +V + Sbjct: 128 TKAAKAAFAAITERKNILLVIARAEDVVALSARNLENVHVLYADQLNTYDVLVSDDVVFT 187 Query: 196 K 196 K Sbjct: 188 K 188 >gi|152978142|ref|YP_001343771.1| 50S ribosomal protein L4 [Actinobacillus succinogenes 130Z] gi|171704188|sp|A6VLI9|RL4_ACTSZ RecName: Full=50S ribosomal protein L4 gi|150839865|gb|ABR73836.1| ribosomal protein L4/L1e [Actinobacillus succinogenes 130Z] Length = 201 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 12 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 72 DIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + + L++ALII LD N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 132 KVLAQKLKDMALNDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVVTV 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|238913846|ref|ZP_04657683.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIITG-DLDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|15835428|ref|NP_297187.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg] gi|270285608|ref|ZP_06195002.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg] gi|270289618|ref|ZP_06195920.1| 50S ribosomal protein L4 [Chlamydia muridarum Weiss] gi|301337004|ref|ZP_07225206.1| 50S ribosomal protein L4 [Chlamydia muridarum MopnTet14] gi|13878710|sp|Q9PJL5|RL4_CHLMU RecName: Full=50S ribosomal protein L4 gi|7190842|gb|AAF39616.1| ribosomal protein L4 [Chlamydia muridarum Nigg] Length = 222 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + + FA +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKVELPDAFFAEGKEQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 60 TRKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V DN V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVADNSVFISSLNAPKTKEALRFLKECNVECRGVLFVDGLDHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + IN YDI +V+S+ A+E L Sbjct: 180 AAVRGFTYGENINGYDIAAARNIVVSEKALELL 212 >gi|116786479|gb|ABK24122.1| unknown [Picea sitchensis] Length = 312 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + L V DGE G S+ D+ +P + ++ R + + +R G + + R+EV Sbjct: 55 VTLPVLTFDGERAGEASL--DLKCARPDTARAVVHRGVITELQNRRRGTASTLTRAEVRG 112 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S+ GGG FGP P + KK + LA+ AL Sbjct: 113 GGRKPYRQKGTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKMNKKEKRLAISTALMSATV 172 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 S ++ N + KTK + + ++ S +I ++ N +L++RNI + +L Sbjct: 173 STVVVEDFNDKFERPKTKEFIEALKRWGVEPSEHTLIFSTEVSENVRLSSRNIGTLKVLT 232 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 + +N+YD+LR KLV ++ ++E L Sbjct: 233 PRNLNLYDVLRADKLVFTEGSVEYL 257 >gi|146308922|ref|YP_001189387.1| 50S ribosomal protein L4 [Pseudomonas mendocina ymp] gi|166199847|sp|A4XZ89|RL4_PSEMY RecName: Full=50S ribosomal protein L4 gi|145577123|gb|ABP86655.1| LSU ribosomal protein L4P [Pseudomonas mendocina ymp] Length = 200 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 102/188 (54%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VS+ F + + ++ + + R G K RS+V+ G + + QKGTGRAR Sbjct: 11 IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F L KK+ ALR L++ ++ ++V+++ + KT Sbjct: 71 TTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVVEDFAVEAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+++ L L++ LI+ +D+N LAARN+P++++ VQG + ++ K++++ Sbjct: 131 KALLSKLNGLGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIAYEKVLVTV 189 Query: 197 SAIEALED 204 SA++ E+ Sbjct: 190 SAVKKFEE 197 >gi|255086631|ref|XP_002509282.1| predicted protein [Micromonas sp. RCC299] gi|226524560|gb|ACO70540.1| predicted protein [Micromonas sp. RCC299] Length = 190 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 14/181 (7%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 I RV+ WQ ++R +K+ RSEV+ T K QKG GRAR + Q RGGG A G Sbjct: 18 IAHRVVVWQRSKRRGNYAKTLTRSEVSGTTRKARAQKGAGRARVGTLRAPQMRGGGVAHG 77 Query: 92 PVPIIGVHA-LPKKVRSLALRHALSDKFCSNDIMVIDNLVSK-ECKTKYLVTRFRALDLS 149 P + + L ++VR L+ ALS K I+V+D+L E KT++L ALD Sbjct: 78 PSGMRNWNTKLQRRVRRAGLQVALSAKAAEGRIVVLDSLHRGVEPKTQWLDG---ALD-- 132 Query: 150 NALIIDGCQ----LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + G Q N + A+ N+P++ ++ G+NVYD+LR L +++ A++AL R Sbjct: 133 ---TLLGAQKLPTTHSNAKRASLNLPHVQVMDQFGLNVYDVLRHRSLAITRDALDALVAR 189 Query: 206 F 206 Sbjct: 190 L 190 >gi|1685372|gb|AAB36823.1| ribosomal protein L4 [Borrelia burgdorferi] Length = 209 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + KGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKHKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|268593542|ref|ZP_06127763.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM 1131] gi|291310820|gb|EFE51273.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM 1131] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|298253072|ref|ZP_06976864.1| ribosomal protein L4 [Gardnerella vaginalis 5-1] gi|297532467|gb|EFH71353.1| ribosomal protein L4 [Gardnerella vaginalis 5-1] Length = 221 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILA------RVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +LA +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ AL + LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALCYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|300718704|ref|YP_003743507.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661] gi|299064540|emb|CAX61660.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661] Length = 201 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGTVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSLEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +L+ N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|54113207|gb|AAV29237.1| NT02FT0099 [synthetic construct] Length = 207 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNLKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|319944794|ref|ZP_08019058.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599] gi|319742043|gb|EFV94466.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599] Length = 206 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ N G+ G +SV + +F + ++ +++ R G K R+EV ++ Sbjct: 1 MELNILNDQGQKAGAVSVVDTVFGTDFNEPLIHQIVVAYQANARSGNRAQKDRTEVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + +K+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNKPDENFSQKVNRKMYRAGMRSILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+++L + KTK LV + + L + LI+ + D N LAARN+P++ +L + Sbjct: 121 DRLSVVESLKLEAPKTKLLVGKLNGMGLKSTLIVVDNE-DENLYLAARNLPHVLVLETRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+ ++ ++++K A+ +++ Sbjct: 180 IDPLSLVHYDNVLVTKQALAQIQE 203 >gi|256831828|ref|YP_003160555.1| 50S ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603] gi|256685359|gb|ACV08252.1| ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603] Length = 228 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 16/170 (9%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K R++V+ G K Y QKGTGRAR S QF GGG GP P PKK Sbjct: 48 RQGTHATKTRAQVSGGGRKPYKQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKK 107 Query: 105 VRSLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTRFRAL--------DLSNALIID 155 +++ ALR ALSD+ + I VID+ V++ TK ++ +L D+ + L++ Sbjct: 108 MKAAALRSALSDRARAGRIHVIDSFGVTEAPSTKGALSALSSLKLSKENFGDVKHVLVVH 167 Query: 156 GCQLDRNFQL---AARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +RN ++ + RNI +++L+ +N YD+L +V +K+A++ Sbjct: 168 ----ERNDEITIKSLRNIESVHLITADQLNTYDVLLSDDVVFTKAALDGF 213 >gi|315125263|ref|YP_004067266.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913] gi|315013776|gb|ADT67114.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913] Length = 201 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASG----ALEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFGLEAPKTKELVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEE 198 >gi|326793559|ref|YP_004311379.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1] gi|326544323|gb|ADZ89543.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1] Length = 201 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G + G + VS+ FA + + ++ +V+ R G K RSEVA G K + Q Sbjct: 4 NLTGAE-GTVEVSDVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVAGGGRKPWKQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +R GG F P + KK+ ALR S+ + ++V++ Sbjct: 63 KGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAALRTIWSELARKDRLVVVE 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L KTK + L++ NAL++ LD N LAARNIPN+ + I+ ++ Sbjct: 123 ELKIDAPKTKLFKAKMAELNVENALVVS-HDLDDNLFLAARNIPNVGVCDAASIDPVSLI 181 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A++ +E+ Sbjct: 182 AYDKVLVTVGALKQVEE 198 >gi|168037394|ref|XP_001771189.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677569|gb|EDQ64038.1| predicted protein [Physcomitrella patens subsp. patens] Length = 235 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + L + +GE G + + D+ +P+ + ++ R + + +R G + + RSEV Sbjct: 11 VTLPMLTFEGEAAGEVEM--DLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRG 68 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S GGG FGP P + KK + LA+ AL Sbjct: 69 GGRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAISTALQS--A 126 Query: 120 SNDIMVIDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 S + +V+++ K KTK ++ R+ N+L+ + L++RN+ + Sbjct: 127 SVNTVVVEDFEDKFTTPKTKEFISALKRWGVKQGENSLLFS-VNPSESLVLSSRNVSTVK 185 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ + +N+YD+LR KL+L+KS++E LE + Sbjct: 186 LITPRNLNLYDVLRADKLILTKSSVEYLEQMY 217 >gi|148652239|ref|YP_001279332.1| 50S ribosomal protein L4 [Psychrobacter sp. PRwf-1] gi|172048472|sp|A5WCJ1|RL4_PSYWF RecName: Full=50S ribosomal protein L4 gi|148571323|gb|ABQ93382.1| LSU ribosomal protein L4P [Psychrobacter sp. PRwf-1] Length = 200 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +S+ F + + ++ +V+ R G K R+EV+ G K + Q Sbjct: 2 NLKTVTGAAVELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGKKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGG+AF P + +K+ A++ L++ + ++++D Sbjct: 62 KGTGRARAGSTRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQDRLILVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK L+++ L+ ALI+ ++D N LAARNIP++N+L ++ ++ Sbjct: 122 SITVSAPKTKELISKLAELNAPRALIVTN-EVDENLYLAARNIPHVNVLGTNEVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALED 204 K+++S A + E+ Sbjct: 181 AFDKVIMSVDAAKQFEE 197 >gi|183600752|ref|ZP_02962245.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827] gi|188019730|gb|EDU57770.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827] Length = 201 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|77165786|ref|YP_344311.1| ribosomal protein L4/L1e [Nitrosococcus oceani ATCC 19707] gi|109893612|sp|Q3J8R5|RL4_NITOC RecName: Full=50S ribosomal protein L4 gi|76884100|gb|ABA58781.1| LSU ribosomal protein L4P [Nitrosococcus oceani ATCC 19707] Length = 206 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + L+V++L + + G+ +S+ +F + ++ +V+ + R G K RSE Sbjct: 1 MNLAVQSLAENSETGMTQLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGG+AF P + +K+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +ID ++ + KT+ L + + + LI+ + DRN +L+ARNIP + + V Sbjct: 121 DRLRMIDKIMLSKPKTRDLAKLLKPITWRSVLIVV-AEDDRNLELSARNIPTVAIRNVSR 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++ +++R ++++ AI E+ Sbjct: 180 VSPVELIRFDGVLVTGDAIRCFEE 203 >gi|240947883|ref|ZP_04752323.1| 50S ribosomal protein L4 [Actinobacillus minor NM305] gi|240297845|gb|EER48281.1| 50S ribosomal protein L4 [Actinobacillus minor NM305] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L++ALII +D N LAARN+ +++ VQ I+ ++ K+V++ Sbjct: 131 KVLVQKLKDLALTDALIIT-ANVDENLFLAARNLYKVDVRDVQAIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|212708982|ref|ZP_03317110.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM 30120] gi|212688348|gb|EEB47876.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM 30120] Length = 201 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII +LD N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALQDVLIIT-AELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|163783904|ref|ZP_02178878.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] gi|159880825|gb|EDP74355.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] Length = 126 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 85 GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GGG A GP P +ALPKKVR AL+ LS K +I+++++ KTK V + Sbjct: 3 GGGVAHGPQPRDYYYALPKKVRKKALKGVLSIKLKDGEIIIVEDFSFDAPKTKNAVEVLK 62 Query: 145 ALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 L L N ++I + D NF + RN+P + L+PV+G+N YDIL K+++ KSA E + Sbjct: 63 NLGLENEKVLIVYNEKDDNFIKSFRNLPKVKLIPVEGLNTYDILNADKVLILKSAAEKIN 122 Query: 204 DRF 206 +R Sbjct: 123 ERL 125 >gi|224532312|ref|ZP_03672944.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116] gi|224511777|gb|EEF82183.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116] Length = 209 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVKGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + L+ ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASLNGKVVILLGNDDQMIKRAGKNIRDLKVLSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|218889410|ref|YP_002438274.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58] gi|226730709|sp|B7V645|RL4_PSEA8 RecName: Full=50S ribosomal protein L4 gi|218769633|emb|CAW25393.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 3/189 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VSE F + + ++ + + R G K RSEV+ G K + QKGTGRAR Sbjct: 11 IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F P L KK+ ALR L++ + ++V+ + KT Sbjct: 71 TIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVVADFAVDAPKT 130 Query: 137 KYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K LV + L L + LI+ DG +D N LAARN+ ++++ VQG + ++ K++++ Sbjct: 131 KGLVAKLDTLGLKDVLIVTDG--VDENLYLAARNLAHVDVRDVQGSDPVSLIAYDKVLVT 188 Query: 196 KSAIEALED 204 SA++ E+ Sbjct: 189 VSAVKKFEE 197 >gi|253690182|ref|YP_003019372.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491565|sp|C6DG73|RL4_PECCP RecName: Full=50S ribosomal protein L4 gi|251756760|gb|ACT14836.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 201 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +LD N LAARN+ +++ I+ ++ K+V Sbjct: 129 PKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|261493008|ref|ZP_05989550.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495172|ref|ZP_05991635.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309148|gb|EEY10388.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311352|gb|EEY12513.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + + L++ALII +D N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLAQKLKDMALNDALIIT-ANVDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|15599458|ref|NP_252952.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1] gi|107103775|ref|ZP_01367693.1| hypothetical protein PaerPA_01004846 [Pseudomonas aeruginosa PACS2] gi|116052297|ref|YP_788857.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14] gi|152987454|ref|YP_001346224.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7] gi|254237125|ref|ZP_04930448.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719] gi|254242916|ref|ZP_04936238.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192] gi|296387181|ref|ZP_06876680.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAb1] gi|313111416|ref|ZP_07797221.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016] gi|46396659|sp|Q9HWD6|RL4_PSEAE RecName: Full=50S ribosomal protein L4 gi|122261446|sp|Q02T79|RL4_PSEAB RecName: Full=50S ribosomal protein L4 gi|166199845|sp|A6UZI9|RL4_PSEA7 RecName: Full=50S ribosomal protein L4 gi|9950479|gb|AAG07650.1|AE004841_28 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1] gi|115587518|gb|ABJ13533.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14] gi|126169056|gb|EAZ54567.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719] gi|126196294|gb|EAZ60357.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192] gi|150962612|gb|ABR84637.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7] gi|310883723|gb|EFQ42317.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 3/189 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VSE F + + ++ + + R G K RSEV+ G K + QKGTGRAR Sbjct: 11 IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F P L KK+ ALR L++ + ++V+ + KT Sbjct: 71 TIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVVADFAVDAPKT 130 Query: 137 KYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K LV + L L + LI+ DG +D N LAARN+ ++++ VQG + ++ K++++ Sbjct: 131 KGLVAKLDTLGLKDVLIVTDG--VDENLYLAARNLAHVDVRDVQGSDPVSLIAYDKVLVT 188 Query: 196 KSAIEALED 204 SA++ E+ Sbjct: 189 VSAVKKFEE 197 >gi|1037104|gb|AAB41511.1| ribosomal protein L4 [Haemophilus influenzae] gi|1588630|prf||2209238A ribosomal protein L4 Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGT RAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTARARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFELDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L + +ALII LD N LAARN+ +++ VQGI+ ++ K++++ Sbjct: 131 KVLVQKLKDLAVEDALIITAS-LDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVIVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|330505206|ref|YP_004382075.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01] gi|328919492|gb|AEB60323.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I VS+ F + + ++ + + R G K RS+V+ G + + QKGTGRAR Sbjct: 11 IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F L KK+ ALR L++ ++ ++V+++ KT Sbjct: 71 TTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVVEDFAVDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L L++ LI+ +D+N LAARN+P++++ VQG + ++ K++++ Sbjct: 131 KTLLAKLNGLGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSLIAYEKVLVTV 189 Query: 197 SAIEALED 204 SA++ E+ Sbjct: 190 SAVKKFEE 197 >gi|77359117|ref|YP_338692.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis TAC125] gi|109893622|sp|Q3IF24|RL4_PSEHT RecName: Full=50S ribosomal protein L4 gi|76874028|emb|CAI85249.1| 50S ribosomal subunit protein L4 [Pseudoalteromonas haloplanktis TAC125] gi|332038836|gb|EGI75278.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis ANT/505] Length = 201 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 108/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASGG----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFALAAPKTKELVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEE 198 >gi|297571934|ref|YP_003697708.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595] gi|296932281|gb|ADH93089.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595] Length = 215 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 11/209 (5%) Query: 1 MIELSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M +L V LD G G ++ + F L+ ++ +V+ Q R G K+K R EV Sbjct: 1 MADLKVDILDTTGAKAGSATLPAESFDLEINIPLIHQVVVAQLAAARQGTHKTKTRGEVR 60 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S F GGG GP P PKK+ + ALR ALSD+ Sbjct: 61 GGGVKPFKQKGTGRARQGSIRAPHFTGGGTVHGPRPRDYSQRTPKKMIAAALRQALSDRA 120 Query: 119 CSNDIMVIDNLV-SKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQ---LAARNIPNI 173 + I V+ +V S TK + + + AL++ L+RN + L+ RN+ Sbjct: 121 RNGRIHVVTGIVDSATPSTKAALNLVSKVAEQRGALVV----LERNEETAVLSLRNLQEA 176 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + L V +N YD+L ++ +++A++ Sbjct: 177 HTLYVDQLNAYDVLVADDVIFTQAALDTF 205 >gi|145300934|ref|YP_001143775.1| 50S ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida A449] gi|166234630|sp|A4ST05|RL4_AERS4 RecName: Full=50S ribosomal protein L4 gi|142853706|gb|ABO92027.1| ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida A449] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K + VSE F + + ++ +V+ + R G RSEV+ G K + QKGTGRA Sbjct: 9 KSALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ A+R LS+ ++V++ + Sbjct: 69 RAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQERLIVVEKFGIEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L+ + + ++L++ LI+ ++D N LAARN+ +++ V GI+ ++ K++ Sbjct: 129 PKTKELIAKLKEMELTDVLIVT-AEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTAEAVKQIEE 198 >gi|311693272|gb|ADP96145.1| 50S ribosomal protein L4 [marine bacterium HP15] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 2/197 (1%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 + G KG ISVS+ FA + ++ +V+ R G K RSEV+ G K + Q Sbjct: 4 TITGSGKG-ISVSDAAFAKDFNESLVHQVVTAYMAGARQGTKAQKTRSEVSGGGKKPWRQ 62 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R S+ ++V+D Sbjct: 63 KGTGRARAGTIRSPIWRSGGVTFAAKPRGFEQKVNRKMYRAAMRSIFSELVRQERLVVVD 122 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK + + + ++NALI+ +++N LA+RNIP++++ + G++ ++ Sbjct: 123 DMNVDSPKTKAFNAKLKDIGVTNALILSD-NVEQNLHLASRNIPHVDVRDIAGLDPVSLV 181 Query: 188 RCSKLVLSKSAIEALED 204 K+V++ A++ +E+ Sbjct: 182 AFEKVVVTVPALKKIEE 198 >gi|119468279|ref|ZP_01611405.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7] gi|119448272|gb|EAW29536.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASG----ALEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFGLEAPKTKDLVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEE 198 >gi|6919958|sp|O80361|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein L4 [Nicotiana tabacum] Length = 282 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + DG + G +++ L + ++ R L +R G + + RSEV G K Sbjct: 48 IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIK 107 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S GGG FGP P + KK + LA+ ALS S + Sbjct: 108 PYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSS--ASENT 165 Query: 124 MVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +V++ K + KTK + R LD + + N L++RNI + +L + Sbjct: 166 IVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPR 225 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++DIL KLVL+KSA++ L +R+ Sbjct: 226 TLNLFDILDSEKLVLTKSAVDFLNERY 252 >gi|256825885|ref|YP_003149845.1| 50S ribosomal protein L4P [Kytococcus sedentarius DSM 20547] gi|256689278|gb|ACV07080.1| LSU ribosomal protein L4P [Kytococcus sedentarius DSM 20547] Length = 223 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 9/197 (4%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G + + +IF + ++ +V+ Q R G +K R+EV G K Y QKGT Sbjct: 11 GKATGSVELPAEIFDVAANVPLIHQVVVAQLAAARQGTHSTKTRAEVRGGGRKPYRQKGT 70 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ I V+ ++ Sbjct: 71 GRARQGSTRAPQFAGGGIVHGPQPRDYAQRTPKKMKAAALRGALSDRARHGRIHVLSAVL 130 Query: 131 SKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQL---AARNIPNINLLPVQGINVYD 185 + + V + N L++ L+R +L + RN+ N++ L +N YD Sbjct: 131 EGDAPSSKAVNALLRGQTERRNLLVV----LERGDELSLMSLRNLQNVHALFADQLNTYD 186 Query: 186 ILRCSKLVLSKSAIEAL 202 ++ + + A++A Sbjct: 187 VMCADDVFFTAGALDAF 203 >gi|146181037|ref|XP_001022027.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila] gi|146144303|gb|EAS01782.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila SB210] Length = 358 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 5/195 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + DIF + ++ I+ + W+ R I +K + V+ +G K Y QKGTG+AR Sbjct: 90 TVDLDHDIFNVPLRRDIVHSYVLWRQNRDEIKTHITKTKGTVSGSGKKPYAQKGTGKARM 149 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 +K + GGKA G P I + L KK+R AL+ LS K + +I+ E K Sbjct: 150 GNKRAPGRKKGGKAHGAKPRILRYPLNKKIRLQALKVVLSAKLAEGKLRIIETEQVDEPK 209 Query: 136 TKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 T+ + +D S LI+ Q+D NF+LA +NI + ++V +L ++ + Sbjct: 210 TRAIAKMLEKMDKRSRILIVHPYQIDTNFELAHQNIQKLQSCYPNELSVLKVLTNDRVFI 269 Query: 195 SKSAI----EALEDR 205 + A+ + L+DR Sbjct: 270 TLEALRQLTQELQDR 284 >gi|115938906|ref|XP_001186449.1| PREDICTED: similar to mitochondrial ribosomal protein L4 (L4mt) [Strongylocentrotus purpuratus] Length = 560 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ +L+ G++ + +FA P+ IL R + WQ KRI +K+K R+EV G K Sbjct: 97 TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 156 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGGKA GP P + LP+K+R+ LR AL+ K+ +D+ Sbjct: 157 WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 216 Query: 124 MVIDNL---------VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA 166 ++D+L + CK +Y +D+ + ID C L +F + Sbjct: 217 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVDVFSTSPID-CGLCGSFSTS 267 >gi|269219005|ref|ZP_06162859.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212116|gb|EEZ78456.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 215 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 1/195 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V ++ G+ G + ++F ++ ++ +V+ Q R G +K R EV+ G K + Sbjct: 9 VYDVTGKVTGSFELPAELFDVEVNIPLIHQVVNAQLAAARQGTHSTKTRGEVSGGGKKPF 68 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S QF GGG GP P PKK+ + AL +LSD+ + I V Sbjct: 69 KQKGTGRARQGSIRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALCQSLSDRARNGRIHV 128 Query: 126 IDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++ + E TK + R + A ++ + D +L+ RN P +++ V +N Y Sbjct: 129 VEAFLEGEKPSTKAALGLLRKVIDDRAALVAVSRGDDLTRLSLRNAPEASVIFVDQLNSY 188 Query: 185 DILRCSKLVLSKSAI 199 D+L +V ++SA+ Sbjct: 189 DVLVADDVVFTESAL 203 >gi|54296366|ref|YP_122735.1| 50S ribosomal protein L4 [Legionella pneumophila str. Paris] gi|81602027|sp|Q5X858|RL4_LEGPA RecName: Full=50S ribosomal protein L4 gi|53750151|emb|CAH11543.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str. Paris] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 7 DTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + ++MV+ + Sbjct: 67 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLMVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++SNALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 127 DNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|30248419|ref|NP_840489.1| 50S ribosomal protein L4 [Nitrosomonas europaea ATCC 19718] gi|46577228|sp|Q82X87|RL4_NITEU RecName: Full=50S ribosomal protein L4 gi|30138305|emb|CAD84313.1| Ribosomal protein L4/L1e [Nitrosomonas europaea ATCC 19718] Length = 206 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 2/189 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I SE +F + ++ +V++ R G KGRS+V + K + QKGTGRAR Sbjct: 16 IEASESVFGRVYNEALVHQVVKSYLANARAGTRAQKGRSDVTGSTRKQWRQKGTGRARTG 75 Query: 77 SKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 + + +RGGGK F P L +K+ + S+ +N ++ ID + K Sbjct: 76 AATNPLWRGGGKIFPNKPTENFKQKLNRKMYRAGMCTIFSELLRNNKLVAIDEFQIEMPK 135 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK + + + L N +II ++D N LA+RN+PN+ ++ V I+ +L +V++ Sbjct: 136 TKVCLQKLKNYQLENVMIITS-EIDSNLYLASRNLPNLKVVEVDLIDPVSLLAYDNVVIT 194 Query: 196 KSAIEALED 204 + + +E+ Sbjct: 195 RDTVNKIEN 203 >gi|149192607|ref|ZP_01870761.1| 50S ribosomal protein L4 [Vibrio shilonii AK1] gi|148833556|gb|EDL50639.1| 50S ribosomal protein L4 [Vibrio shilonii AK1] Length = 182 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 6/181 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 N 182 + Sbjct: 175 D 175 >gi|192359371|ref|YP_001981209.1| 50S ribosomal protein L4 [Cellvibrio japonicus Ueda107] gi|226730635|sp|B3PK38|RL4_CELJU RecName: Full=50S ribosomal protein L4 gi|190685536|gb|ACE83214.1| ribosomal protein L4/L1 family [Cellvibrio japonicus Ueda107] Length = 204 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G +G ++VSE F + Q ++ + + R G K R+EV+ G Sbjct: 1 MELKIVNPGGA-QGTVNVSEVAFGREFNQDLVHQAVVAYMAGARQGTKAQKTRAEVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F P L +K+ AL+ LS+ + Sbjct: 60 KKPWRQKGTGRARAGTIRSPIWRGGGVTFAAKPRDFEQKLNRKMYRAALQCILSELNRQD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK LV + DL++ALI+ L N LA+RN+ + + VQG+ Sbjct: 120 RLIVVESFDVDAPKTKALVQKLAQYDLTDALIVT-EDLSENLYLASRNLHKVGVSDVQGV 178 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ E+ Sbjct: 179 DPVSLIGYDKVVVTVPALKKFEE 201 >gi|117618764|ref|YP_854840.1| 50S ribosomal protein L4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|330827884|ref|YP_004390836.1| 50S ribosomal protein L4 [Aeromonas veronii B565] gi|166234629|sp|A0KF22|RL4_AERHH RecName: Full=50S ribosomal protein L4 gi|117560171|gb|ABK37119.1| ribosomal protein L4/L1 family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|328803020|gb|AEB48219.1| 50S ribosomal protein L4 [Aeromonas veronii B565] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K + VSE F + + ++ +V+ + R G RSEV+ G K + QKGTGRA Sbjct: 9 KSALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ A+R LS+ ++V++ + Sbjct: 69 RAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQERLIVVEKFGIEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L+ + + ++L++ LI+ ++D N LAARN+ +++ V GI+ ++ K++ Sbjct: 129 PKTKELIAKLKEMELTDVLIVT-AEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQIEE 198 >gi|332178456|gb|AEE14145.1| ribosomal protein L4/L1e [Thermodesulfobium narugense DSM 14796] Length = 203 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 5/162 (3%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R EV G K Y QK TGRARH S +R GG FGP P +LPKK Sbjct: 41 RSGSACTKTRGEVRGGGKKPYAQKHTGRARHGSIRSPIWRKGGITFGPKPRKYSFSLPKK 100 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDR 161 V L+ AL + + +V++NL + E K K+ V + + + ++ID Sbjct: 101 VIKLSRNIALKNLIDQDRFIVVENLSNIEPKAKFASNFVKKLPGENCKSLIVID--DYFE 158 Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 N A N+PN ++ V + V DIL +++L+ A+E LE Sbjct: 159 NVMRAFANLPNFKIVDVNNLKVADILWSQRVILTPEALECLE 200 >gi|254492322|ref|ZP_05105495.1| ribosomal protein L4/L1 family [Methylophaga thiooxidans DMS010] gi|224462494|gb|EEF78770.1| ribosomal protein L4/L1 family [Methylophaga thiooxydans DMS010] Length = 205 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L +++ DG+ G ISVS+ +F + + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLQLQSFDGKKAGNISVSDALFDREFNESLVHQVVTSYLAGARSGTHAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +R GG F + +K+ A+ LS+ ++ Sbjct: 61 RKPFAQKGSGRARAGTIRSPLWRSGGTTFAAKNRDYSKKVNRKMYRSAIASILSELRRND 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK L+ + ++L LSNALI+ N LA+RN+ +I I Sbjct: 121 ALIVVDKVELDTPKTKDLLAKAQSLGLSNALIVTENAAG-NLALASRNLYDIAATDAAHI 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N +LR K+V+S+ ++ LE+ Sbjct: 180 NPVALLRFEKVVMSEDSVRKLEE 202 >gi|223041818|ref|ZP_03612008.1| 50S ribosomal protein L4 [Actinobacillus minor 202] gi|223017387|gb|EEF15808.1| 50S ribosomal protein L4 [Actinobacillus minor 202] Length = 200 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R GG F P + KK+ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L L++ALII +D N LAARN+ +++ VQ I+ ++ K+V++ Sbjct: 131 KALVQKLKDLALNDALIIT-ANVDENLFLAARNLYKVDVRDVQAIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|303237464|ref|ZP_07324029.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN] gi|302482284|gb|EFL45314.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN] Length = 209 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLDVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPTPRDYSFKLNKKVKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KTK V + + + S +++ + ++ L+ARN+ + Sbjct: 121 AAIIVVEDFNFEAPKTKDFVNFAKNIKVESKKVLLVLPEAQKSVYLSARNLKKAQVTTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N Y +L LV+++++++ +++ Sbjct: 181 QVNTYSVLNADVLVVTENSLKTIDE 205 >gi|294638051|ref|ZP_06716311.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC 23685] gi|291088843|gb|EFE21404.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC 23685] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVSFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKEMALDDVLIVT-SEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|11467470|ref|NP_043616.1| ribosomal protein L4 [Odontella sinensis] gi|1350651|sp|P49546|RK4_ODOSI RecName: Full=50S ribosomal protein L4, chloroplastic gi|1185165|emb|CAA91648.1| 50S ribosomal protein L4 [Odontella sinensis] Length = 215 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 7/175 (4%) Query: 36 VLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI 95 +LR QS +R G +K RSEV G K + QKGTGRAR S ++GGG FGP P Sbjct: 42 ILRHQS-SQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPR 100 Query: 96 IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK----ECKTKYLVTRFRALDLSNA 151 + L KK R LAL+ L +K N+I +IDNL + + KT Y + + ++L Sbjct: 101 KIILKLNKKERKLALQTLLYNK--RNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQK 158 Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++I + +LA RNI N+ L+ +N + +L+ +++++ A++ +++ + Sbjct: 159 ILIIVGEKTIPLKLATRNIKNVELILASNLNTFSLLKAKQILMTPLAVKDIKEIY 213 >gi|224534698|ref|ZP_03675270.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S] gi|224513946|gb|EEF84268.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S] Length = 209 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G +++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTVNLDDRVFNIEVSHGSIYNAIKSELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWVGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL------DRNFQLAARNIPNIN 174 + V++N + KTK L AL + N + +G + D+ + A +NI ++ Sbjct: 121 SSFKVVENFNIESGKTKDL-----ALIIKNFVSFNGKVVVLLGNDDQMIKRAGKNIRDLK 175 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + V D+ L+ +SA+ L + + Sbjct: 176 ILSFDKLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|119478131|ref|ZP_01618210.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143] gi|119448837|gb|EAW30080.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143] Length = 206 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + VS+ FA + + ++ +V+ R G K RS V+ G K + QKGTGRAR Sbjct: 15 GSVEVSDGTFAKEYNEDLVHQVVTSYLAGARQGTRAQKNRSAVSGGGKKPWRQKGTGRAR 74 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 + +R GG F P + +K+ ALR LS+ ++V+D L KE Sbjct: 75 AGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRSILSELARQERLIVVDELSLKEP 134 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L+ L AL++ L N LA+RN+ ++ + V+G+N ++ K+V+ Sbjct: 135 KTKLLIKMLGGFGLERALLVSD-DLSENLYLASRNLYKVDAVDVEGVNPVSLVGAEKVVI 193 Query: 195 SKSAIEALED 204 + A++ E+ Sbjct: 194 TVPALKKFEE 203 >gi|238898926|ref|YP_002924608.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491562|sp|C4K7B7|RL4_HAMD5 RecName: Full=50S ribosomal protein L4 gi|229466686|gb|ACQ68460.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + ++ +V+ + R G K R+EV + K + QKGTGRAR Sbjct: 12 LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKSRAEVKASRKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +R GG F P + KK+ AL+ LS+ N ++V++ ++ KT Sbjct: 72 SVKSPIWRSGGITFAAKPQDHSQKVNKKMYQGALKSILSELVRQNRLIVVETFSVEKPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + + + L + LI+ ++D N LAARN+ +++ GI+ ++ K+V++ Sbjct: 132 KLLIQKLKEMSLRDVLIVTE-EVDENLFLAARNLYKVDVRDAAGIDPVSLISFDKVVMTG 190 Query: 197 SAIEALED 204 +A++ LE+ Sbjct: 191 NAVKQLEE 198 >gi|12084410|pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 Length = 225 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 19/221 (8%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ G Sbjct: 2 QVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGR 61 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QK TGRARH S +R GG GP P L KK++ LALR ALS K+ N Sbjct: 62 KPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENK 121 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLD--RNFQLAARNIPNINLL-- 176 ++V+D+L + KTK L + L LS+ LI+ + + N +L+ RN+P++ ++ Sbjct: 122 LLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIA 181 Query: 177 --P-----------VQGINVYDILRCSKLVLSKSAIEALED 204 P + G+NV+D+L+ LVL++ + +E+ Sbjct: 182 DNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEE 222 >gi|194477057|ref|YP_002049236.1| 50S ribosomal protein L4 [Paulinella chromatophora] gi|171192064|gb|ACB43026.1| 50S ribosomal protein L4 [Paulinella chromatophora] Length = 211 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 14/209 (6%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V + G++ G +V+ + L ++ R + Q +R G + + RSEV G K Y Sbjct: 6 VHDWQGQEAGKATVNLKVAKLSSAIDLMHRAVLRQLAHQRQGTASTLTRSEVKGGGRKPY 65 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S GGG FGP P + KK R LALR AL + + D +V Sbjct: 66 KQKGTGRARQGSTRTPLRPGGGVVFGPSPRTYSLGMNKKERRLALRTALMSR--AEDSIV 123 Query: 126 IDNLVS--KECKTKYL---VTRFRALDLSNALIIDGCQLD---RNFQLAARNIPNINLLP 177 I + + KTK + + RF + LII LD + RN+P + L+ Sbjct: 124 IKGFGTGIDKPKTKTITDALERFGIGKETKVLII----LDSPSSAITYSIRNLPKVKLIK 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L SK++LS+ A+ +E+ + Sbjct: 180 ADQLNVFDLLHASKVLLSEEALARIEEVY 208 >gi|115712808|ref|XP_792959.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 486 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ +L+ G++ + +FA P+ IL R + WQ KRI +K+K R+EV G K Sbjct: 23 TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 82 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGGKA GP P + LP+K+R+ LR AL+ K+ +D+ Sbjct: 83 WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 142 Query: 124 MVIDNL---------VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA 166 ++D+L + CK +Y +D+ + ID C L +F + Sbjct: 143 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVDVFSTSPID-CGLCGSFSTS 193 >gi|307104743|gb|EFN52995.1| hypothetical protein CHLNCDRAFT_49059 [Chlorella variabilis] Length = 222 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 10/211 (4%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + L V+ LDG D G S+S + G++ R L R G + + RSEV Sbjct: 11 VALPVKKLDGSDVGSSASISLRVADEDTANGLVHRYLVMVRQNARQGNASTLTRSEVRGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKG+G AR S+ GGG +FGP P ++ KK R LA AL + + Sbjct: 71 GRKPYKQKGSGNARRGSRRSPLMPGGGISFGPKPRDWSISMNKKERKLACATAL--QSAA 128 Query: 121 NDIMVIDNLVSKEC-KTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINL 175 D++V D+ + E TK LV A+ + L+++ + + L+ RN+P + + Sbjct: 129 ADMLVCDDFGALEAVSTKGLVASLAAMGVQEGEKVLLVVN--EANEKLYLSGRNLPTLAI 186 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + VYD+L ++V+ +SA+ L + F Sbjct: 187 NTANAVQVYDVLNADRIVVEQSALAYLNEWF 217 >gi|187930363|ref|YP_001900850.1| 50S ribosomal protein L4 [Ralstonia pickettii 12J] gi|241664531|ref|YP_002982891.1| 50S ribosomal protein L4 [Ralstonia pickettii 12D] gi|309782835|ref|ZP_07677555.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA] gi|226730711|sp|B2UEL8|RL4_RALPJ RecName: Full=50S ribosomal protein L4 gi|187727253|gb|ACD28418.1| ribosomal protein L4/L1e [Ralstonia pickettii 12J] gi|240866558|gb|ACS64219.1| ribosomal protein L4/L1e [Ralstonia pickettii 12D] gi|308918259|gb|EFP63936.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA] Length = 206 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLQDNGQLGAGVAASPEVFGRDYNEALVHQVVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D+L KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMGLDSVLVITD-NLDENLFLASRNLAHVLVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|320103618|ref|YP_004179209.1| 50S ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644] gi|319750900|gb|ADV62660.1| ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644] Length = 256 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 27/234 (11%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ + V + +G G ++ F ++ +L V+ +R+G ++GR++VA + Sbjct: 1 MVTVPVYDREGRKVGEETIDPADFGGVVKKQLLHDVVLMHLAARRVGTVNTRGRADVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR SK ++ +GGG AF + LPK+ A+R A+ KF Sbjct: 61 GKKLFRQKGTGNARVGSKRTNKRKGGGVAFARRNRNYRYTLPKRAVRAAIRMAVLSKFLD 120 Query: 121 NDIMVIDNL-VSKEC-KTKYLVTRFRAL---DLSNALI--IDGC--------QLDRNFQL 165 + +++++L ++++ KT+ + RAL DL+ + +G LD L Sbjct: 121 HQALIVEDLPINRDAPKTRDVAALLRALPRPDLNGEAVQPTEGEPKSHALKRTLDHRSVL 180 Query: 166 ------------AARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 AARN+ + + PV N YDIL+ L+L++ A+EAL+ R K Sbjct: 181 IGLPAHDPIAWRAARNVEGVMVAPVAEFNTYDILKQRYLLLTRPALEALKQRAK 234 >gi|119947125|ref|YP_944805.1| 50S ribosomal protein L4 [Psychromonas ingrahamii 37] gi|166199850|sp|A1T0E1|RL4_PSYIN RecName: Full=50S ribosomal protein L4 gi|119865729|gb|ABM05206.1| LSU ribosomal protein L4P [Psychromonas ingrahamii 37] Length = 201 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + + ++ +V+ + R G K RS+V+ G K + QKGTGRA Sbjct: 9 QSALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + + GGG F P + KK+ A++ LS+ + ++V++ + Sbjct: 69 RSGTIRSPIWVGGGVTFAARPQDHSQKVNKKMYRGAVKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KT+ L + + LDL + LII +LD N LAARN+ +++ VQGI+ ++ K++ Sbjct: 129 PKTQELKAKLKELDLKDVLIIT-EELDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVL 187 Query: 194 LSKSAIEALED 204 ++ +A++ +E+ Sbjct: 188 VTAAAVKKIEE 198 >gi|254672672|emb|CBA06527.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha275] Length = 185 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 2/163 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R G K R+EV ++ K QKGTGRAR S +R GG+AF P + + Sbjct: 23 RSGNRAQKTRAEVKHSTKKPSRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNR 82 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K+ + LS + I+ L ++ KTK + + L L L + QLD N Sbjct: 83 KMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTK-QLDENV 141 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LA+RN+PN+ +L Q ++ Y +LR K++++K A+ LE+++ Sbjct: 142 YLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQW 184 >gi|284006162|emb|CBA71404.1| 50S ribosomal protein L4 [Arsenophonus nasoniae] Length = 199 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 7 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 66 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 67 RAGSVKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFALEA 126 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LI+ ++D N LAARN+ +++ GI+ ++ K+V Sbjct: 127 PKTKLLVQKLKEMALDDVLIVTN-EVDENLFLAARNLYKVDVRDAIGIDPVSLIAFDKVV 185 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 186 MTADAVKQIEE 196 >gi|259909998|ref|YP_002650354.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96] gi|224965620|emb|CAX57152.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96] gi|283480095|emb|CAY76011.1| 50S ribosomal protein L4 (BL4) [Erwinia pyrifoliae DSM 12163] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSLEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK LV + + + L + LII G +L+ N LAARN+ +++ I+ ++ K+V Sbjct: 129 PKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAAIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|197287069|ref|YP_002152941.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320] gi|227354933|ref|ZP_03839347.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906] gi|226730708|sp|B4F1I5|RL4_PROMH RecName: Full=50S ribosomal protein L4 gi|194684556|emb|CAR46382.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320] gi|227165015|gb|EEI49854.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 +G ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRA Sbjct: 9 QGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG +F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ ++D N LAARN+ +++ I+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALEDVLIVT-AEVDENLYLAARNLYKVDVRDAATIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|119773355|ref|YP_926095.1| 50S ribosomal protein L4 [Shewanella amazonensis SB2B] gi|166199860|sp|A1S219|RL4_SHEAM RecName: Full=50S ribosomal protein L4 gi|119765855|gb|ABL98425.1| LSU ribosomal protein L4P [Shewanella amazonensis SB2B] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+E+ TG K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEITGTGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +RGGG F + KK+ AL LS+ ++V++ + KT Sbjct: 72 GIKGPLWRGGGVTFAAKTQDHSQKVNKKMYRGALMSILSELVRQERLVVVEQFAVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + +A+DL + LI+ ++D N LAARN+ +++ V G++ ++ +K++++ Sbjct: 132 KELKAKLKAMDLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNKVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|330899736|gb|EGH31155.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 154 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 RS+V G + + QKGTGRAR + +RGGG F P L KK+ ALR Sbjct: 2 RSDVRGGGKRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSI 61 Query: 114 LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 L++ ++ ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++ Sbjct: 62 LAELVRTDRLVVVQDFAVEAPKTKDLLNKLTGMGLTDVLIVSDA-VDQNLYLAARNLPHV 120 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ VQG + ++ K++++ SA++ E+ Sbjct: 121 DVRDVQGSDPVSLIAYDKVLITVSAVKKFEE 151 >gi|254495712|ref|ZP_05108628.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12] gi|254355059|gb|EET13678.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12] Length = 201 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 107/196 (54%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 ++K +++++D+FA +G++ + + R G S K RSEV G K + QKGTG Sbjct: 7 DNKTTLTLNQDVFAYAYNEGLIHQAVVTFMNNARSGNSAQKTRSEVRGGGRKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F + KK+ ALR +S+ + +++VI + Sbjct: 67 RARAGTIRSPIWRSGGVTFASKKRDYSQKINKKMYKRALRSIISELCRTGNLIVISDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + KTK V++ L+++NALI+ ++ N +RN+ + ++ V ++ +LR K Sbjct: 127 ESKKTKDFVSKMSQLEINNALIV-MSEVGENEYFGSRNLIDFDICDVATLDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|216263708|ref|ZP_03435703.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1] gi|215980552|gb|EEC21373.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1] Length = 209 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|160895841|ref|YP_001561423.1| 50S ribosomal protein L4 [Delftia acidovorans SPH-1] gi|226730650|sp|A9BPR9|RL4_DELAS RecName: Full=50S ribosomal protein L4 gi|160361425|gb|ABX33038.1| ribosomal protein L4/L1e [Delftia acidovorans SPH-1] Length = 206 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKFDAPETVFGREFNEDLVHQIVIAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMVAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLESVMVI-AEEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K AI+ L++ F+ Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMFE 206 >gi|187932142|ref|YP_001892127.1| 50S ribosomal protein L4 [Francisella tularensis subsp. mediasiatica FSC147] gi|226730667|sp|B2SDY4|RL4_FRATM RecName: Full=50S ribosomal protein L4 gi|187713051|gb|ACD31348.1| 50S ribosomal protein L4 [Francisella tularensis subsp. mediasiatica FSC147] Length = 207 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRLG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|238921441|ref|YP_002934956.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146] gi|269140569|ref|YP_003297270.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202] gi|259491556|sp|C5BGM4|RL4_EDWI9 RecName: Full=50S ribosomal protein L4 gi|238871010|gb|ACR70721.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146] gi|267986230|gb|ACY86059.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202] gi|304560358|gb|ADM43022.1| LSU ribosomal protein L4p (L1e) [Edwardsiella tarda FL6-60] Length = 201 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F P + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LI+ ++D N LAARN+ +++ V GI+ ++ K+V Sbjct: 129 PKTKLLAQKLKDMALDDVLIVT-SEVDENLFLAARNLFKVDVRDVAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|225621029|ref|YP_002722287.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1] gi|296126866|ref|YP_003634118.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563] gi|254803718|sp|C0QVZ7|RL4_BRAHW RecName: Full=50S ribosomal protein L4 gi|225215849|gb|ACN84583.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1] gi|296018682|gb|ADG71919.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563] Length = 215 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 8/214 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ + N +G+ G + + ++IF + +L ++ + +R G +K R+EV+ G Sbjct: 1 MEVVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGGK P P + LPKK++ AL LS K+ SN Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGSN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN----ALIIDGCQ-LDRNFQ---LAARNIPNI 173 + V ++ KTK + + + N A ++ + L N+ L+ RNI ++ Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNTRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ ++++ + ++ +K+A+ L R K Sbjct: 181 KLVNADSMSIHPLFYADEVYFTKTALSKLNARIK 214 >gi|329898793|ref|ZP_08272465.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088] gi|328920745|gb|EGG28207.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088] Length = 205 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V G +SVS+ FA + + ++ +V+ R G K RSEV+ G Sbjct: 1 MELNVLKPGNASAGTVSVSDVAFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R LS+ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNRKMYRAAIRSILSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++++ + KTK LV + L N LI+ +++ N LA+RN+ +++ V+ + Sbjct: 121 RLLVVESMDVEAPKTKLLVKQLGEFGLDNVLIV-ASEVNENLYLASRNLHTVDVRDVESV 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ E+ Sbjct: 180 DPVSLIAYDKVVVTVDAVKKFEE 202 >gi|307823443|ref|ZP_07653672.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96] gi|307735428|gb|EFO06276.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96] Length = 206 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + L + L+ +D G + V+E IF + ++ +++ R G K RS+V+ Sbjct: 1 MSLQIPALNEQDSSGSLEVAEAIFGQSFNETLVHQLVVRHLAGARAGTKAQKTRSDVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +R GG AF P L KK+ + +R LS+ Sbjct: 61 GAKPWRQKGTGRARSGTTRSPVWRTGGVAFAARPRNYEQKLNKKMFRVGVRSILSELLRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V ++++ KTK L R + +D LI+ +D N LA+RNIP + + ++ Sbjct: 121 NRLVVSNDILPSSPKTKELNARIKNIDAKRILIVV-ENVDANLALASRNIPYVEV--IEA 177 Query: 181 INVYDILRCS--KLVLSKSAIEALEDRF 206 IN+ +L S K++ + A++ +E+R Sbjct: 178 INLSPVLLVSADKVIATPGALKQIEERL 205 >gi|270157909|ref|ZP_06186566.1| ribosomal protein L4 [Legionella longbeachae D-4968] gi|289163831|ref|YP_003453969.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150] gi|269989934|gb|EEZ96188.1| ribosomal protein L4 [Legionella longbeachae D-4968] gi|288857004|emb|CBJ10818.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150] Length = 201 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K +++++D+FA +G++ + + R G S K R+EV G K + QKGTG Sbjct: 7 DTKSTLALNQDVFAYGYNEGLIHQAVVAYMNNARSGNSAQKTRAEVRGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 67 RARAGTIRSPIWRTGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLLVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + KTK + + L+++NALII ++ N +RN+ + ++ V ++ +LR K Sbjct: 127 ESKKTKDFINKMNQLNVTNALII-MTEVGENEYFGSRNLIDYDICDVTTVDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|297170807|gb|ADI21827.1| hypothetical protein [uncultured gamma proteobacterium HF0130_25M15] Length = 205 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ ++N + I +S+ +F + G++ ++ R K RS V+ G Sbjct: 1 MKIDLKNQENSTVKSIDISDSVFKAEINDGLIHELVTAYRSNGRSATKGQKNRSRVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + + GGG AF V + KK A++ S Sbjct: 61 AKPWRQKGTGRARAGTTRGPLWVGGGMAFATVDRNYTKKINKKAYKRAMQSIFSALTKEK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+ ID++ KTK + +L++ NALII QL+ N L+ RN+P+I ++ V+ + Sbjct: 121 RIIAIDSIKIDSPKTKLGIELLNSLEIENALIIV-SQLESNLHLSLRNVPHITVISVENV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + +L +V+ + A LE F Sbjct: 180 DPISLLSHETIVIDQEAFNKLEGMF 204 >gi|84494785|ref|ZP_00993904.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649] gi|84384278|gb|EAQ00158.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649] Length = 331 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 9/191 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ ++ +V+ Q R G +K R EV G K + QKGTGRAR Sbjct: 11 VDLPAEIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPHRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-K 135 S + GGG GP P PKK+++ ALR ALSD+ I V+ +LV + Sbjct: 71 STRAPHWTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARHGRIHVVASLVQGDAPS 130 Query: 136 TKYLVTRFRAL-DLSNALIIDGCQLDRNFQL---AARNIPNINLLPVQGINVYDILRCSK 191 TK V L + N L++ LDR+ + + RN+ N++++ +N YD+L Sbjct: 131 TKEAVALLAGLTERKNMLVV----LDRSDIVSLKSVRNLENLHVIVADQLNTYDVLCADD 186 Query: 192 LVLSKSAIEAL 202 +V +++A +A Sbjct: 187 VVFTQAAFDAF 197 >gi|319761139|ref|YP_004125076.1| ribosomal protein l4/l1e [Alicycliphilus denitrificans BC] gi|330822997|ref|YP_004386300.1| 50S ribosomal protein L4/L1e [Alicycliphilus denitrificans K601] gi|317115700|gb|ADU98188.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans BC] gi|329308369|gb|AEB82784.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans K601] Length = 206 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|170591979|ref|XP_001900747.1| ribosomal protein L4/L1 family protein [Brugia malayi] gi|158591899|gb|EDP30502.1| ribosomal protein L4/L1 family protein [Brugia malayi] Length = 303 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 4/194 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +IS+ DIF P+ +L R + WQ + + +K + E+ G K + QK TGR Sbjct: 71 LISLHPDIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHA 130 Query: 76 SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--- 131 S FR GG A G P + LP +R L A++ K ND++++DN S Sbjct: 131 GSIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCIAVTIKHAQNDLVIVDNFASLPN 190 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + + + + R S I D ++ N IP N++PV GIN + +++ Sbjct: 191 ADAQFMHDLADSRNWGYSILFINDSSEVPENMAKVCDEIPTFNVMPVYGINCFSLVKHDT 250 Query: 192 LVLSKSAIEALEDR 205 ++ S +A++ + R Sbjct: 251 VIFSLAALQLFQSR 264 >gi|307609139|emb|CBW98586.1| 50S ribosomal subunit protein L4 [Legionella pneumophila 130b] Length = 201 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 7 DTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 67 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLVVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++SNALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 127 DNHKTKDFLNKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|88854681|ref|ZP_01129347.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1] gi|88815842|gb|EAR25698.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1] Length = 219 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 3/201 (1%) Query: 5 SVRNLDGEDKGVISVS--EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 S+ LD + K V SV +IF ++ ++ +V+ Q R G + R EV+ +G Sbjct: 4 SIDVLDAKGKKVDSVELPAEIFDVQTNVPLIHQVVVAQRAAARQGTHNTLRRGEVSGSGR 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q +GGG GP P PKK+ + ALR LSD+ Sbjct: 64 KPFKQKGTGRARQGSIRAPQMKGGGIVHGPHPRDYSQRTPKKMIAAALRGTLSDRARGER 123 Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VID V + TK ++ + S +++ + D + RNI +++L + Sbjct: 124 IHVIDAFAVEGKPSTKTVLALLNNIAPSKHVLVVLERDDATSIKSIRNIDAVHVLTFDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V SK A +A Sbjct: 184 NAYDVVVSDDIVFSKGAFDAF 204 >gi|163752595|ref|ZP_02159774.1| 50S ribosomal protein L4 [Shewanella benthica KT99] gi|161327507|gb|EDP98714.1| 50S ribosomal protein L4 [Shewanella benthica KT99] Length = 201 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +RGGG F + KK+ AL+ S+ + ++V+++ + Sbjct: 69 RAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFTVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + A+DL + LI+ ++D N LAARN+ +++ V GI+ ++ +K++ Sbjct: 129 PKTKELKAKLAAMDLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 VTADAVKQIEE 198 >gi|169843886|ref|XP_001828667.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130] gi|116510276|gb|EAU93171.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130] Length = 297 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 1/202 (0%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 RN DK V+ + +F ++ IL + R G + +K RSEV +G K+ Sbjct: 64 RNDPKPDKDVVVLDPTVFDHPIRRDILHLCVTHHLDSLRQGSANTKTRSEVRGSGRKIRP 123 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR GGG AFGP P LP+KV + +R ALS K + V+ Sbjct: 124 QKGTGRARLGDGQSPMLVGGGIAFGPKPRDFSTKLPRKVIQMGMRVALSAKVKERHLGVM 183 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQGINVYD 185 L KTK+L + L L L I G ++ + A + + V +NVY+ Sbjct: 184 SRLDWPNGKTKHLQQKIDLLGLRKTLFITGENEVTTGLKRAINMLKYAAAVTVAEVNVYE 243 Query: 186 ILRCSKLVLSKSAIEALEDRFK 207 +L+ +++L A+E E K Sbjct: 244 LLKWERVILDLKAVEYFETTLK 265 >gi|119899705|ref|YP_934918.1| 50S ribosomal protein L4 [Azoarcus sp. BH72] gi|166234632|sp|A1KB26|RL4_AZOSB RecName: Full=50S ribosomal protein L4 gi|119672118|emb|CAL96032.1| 50S ribosomal protein L4 [Azoarcus sp. BH72] Length = 206 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + S+ +FA + + ++ +V+ R G KGRSE+A + Sbjct: 1 MELKLLNEQGQPASTLDASDVLFAREYNEALVHQVVTAYLANARSGNRAQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGGK F P + +K+ + LS Sbjct: 61 RKPFRQKGTGNARAGMASSPLWRGGGKIFPNSPDENFSQKVNRKMYRAGVAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQ 179 + + V+DN + KT+ L + + + L + L+I DG LD N L++RN+ + +L V Sbjct: 121 DRLAVVDNFSVEAPKTRLLAEKLKGMGLDSVLVITDG--LDENLFLSSRNLHKVLVLDVH 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++R K++++K A+ +E+ ++ Sbjct: 179 ETDPVSLVRFPKVLVTKGALAKMEEAWQ 206 >gi|152980648|ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthinobacterium sp. Marseille] gi|166234676|sp|A6T3K3|RL4_JANMA RecName: Full=50S ribosomal protein L4 gi|151280725|gb|ABR89135.1| large subunit ribosomal protein L4 [Janthinobacterium sp. Marseille] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+NL + KTK L + + + L + L+I LD N LA+RN+PN+ + + Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDS-LDENLLLASRNLPNVLICEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K A+ +E+ Sbjct: 180 ADPVSLVFYKKILITKLALAKIEE 203 >gi|121608244|ref|YP_996051.1| 50S ribosomal protein L4 [Verminephrobacter eiseniae EF01-2] gi|166199922|sp|A1WHC6|RL4_VEREI RecName: Full=50S ribosomal protein L4 gi|121552884|gb|ABM57033.1| LSU ribosomal protein L4P [Verminephrobacter eiseniae EF01-2] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQGASRLDVPETVFGREYNEALVHQIVVAYQANARQGTRAQKDRGQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P H + KK+ + S Sbjct: 61 RKPFKQKGTGNARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMSAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++ KT+ L +F+A++L + ++I ++D N LAARN+ N+ ++ + Sbjct: 121 GRLAVVESIKLDSPKTRVLADKFKAMNLQSVMVI-ADEVDENLYLAARNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K++++K AI+ L++ F Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLQEMF 205 >gi|82701901|ref|YP_411467.1| 50S ribosomal protein L4 [Nitrosospira multiformis ATCC 25196] gi|109893611|sp|Q2YAZ6|RL4_NITMU RecName: Full=50S ribosomal protein L4 gi|82409966|gb|ABB74075.1| LSU ribosomal protein L4P [Nitrosospira multiformis ATCC 25196] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + +G+ +S SE +F + + ++ +V+ R K RS+VA + Sbjct: 1 MELKLIDYNGQSSASVSASETLFGREYNEALVHQVVTAYLANARSANRAQKARSDVAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + +K+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPLWRGGGKIFPNSPEENFSHKVNRKMYRAGIGAILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V++N + KTK L + + + L +II +D N L++RN+P + ++ Sbjct: 121 NRLSVVENFIVDAPKTKILAQKLKDMGLDQVMIITD-NIDENLYLSSRNLPLVKVVEAGY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++R + ++++++A+ +E+ Sbjct: 180 ADPVSLMRFANVLITRNALAKMEE 203 >gi|326315225|ref|YP_004232897.1| 50S ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372061|gb|ADX44330.1| ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC 19860] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ I V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|257095039|ref|YP_003168680.1| 50S ribosomal protein L4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047563|gb|ACV36751.1| ribosomal protein L4/L1e [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G++ + S+ +F + + ++ +VL R G K R +V +T Sbjct: 1 MELKLINEQGQEASRLEASDALFGREYNEALVHQVLVAYQANARSGNRAQKDRQDVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L +K+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPIWRGGGRVFPSSPDENFSQKLNRKMYRAGMAAILSQLVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D L KTK + + + + L+I LD N LAARN+PN+ +L V Sbjct: 121 DRLAVVDTLSIAAPKTKLFAAKIKDMGYESVLVITD-DLDENVFLAARNLPNVLVLEVSQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K A+ E+ Sbjct: 180 TDPVSLIHFPKVLVTKGALAKFEE 203 >gi|296137305|ref|YP_003644547.1| ribosomal protein L4/L1e [Thiomonas intermedia K12] gi|295797427|gb|ADG32217.1| ribosomal protein L4/L1e [Thiomonas intermedia K12] Length = 206 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L N G+ VS ++F + ++ +++ R+G K R+ V ++ Sbjct: 1 MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + KK +R S Sbjct: 61 RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D + KTK + + +A+ + +II DG D N LAARN+PN+ ++ + Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADGA--DENLFLAARNLPNVLVVEPR 178 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + +L K+V++K A+ L++ Sbjct: 179 YADPLSLLFYKKVVMTKGAVSQLQE 203 >gi|332107867|gb|EGJ09091.1| 50S ribosomal protein L4 [Rubrivivax benzoatilyticus JA2] Length = 206 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +FA + ++ +V+ R G R EV ++ Sbjct: 1 MQLELLNEQGQATAKVDAPDTVFARDYNEALVHQVVVAYQANARQGTRAQLDRGEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNRPDENFSHKVNKKMYRAGMASILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L + +A+ L + ++I Q+D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLTVDAPKTKLLAQKLKAMGLESVMVI-ADQIDDNLALASRNLANVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AIE L++ F Sbjct: 180 ADPLSLVFYKKVLVTKGAIEQLKEMF 205 >gi|120609042|ref|YP_968720.1| 50S ribosomal protein L4 [Acidovorax citrulli AAC00-1] gi|166234623|sp|A1TJ08|RL4_ACIAC RecName: Full=50S ribosomal protein L4 gi|120587506|gb|ABM30946.1| LSU ribosomal protein L4P [Acidovorax citrulli AAC00-1] Length = 206 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ I V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVISD-EVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|325972660|ref|YP_004248851.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy] gi|324027898|gb|ADY14657.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy] Length = 209 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 9/210 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG + I +++ +F + G + + + +R+G + +K R+EV Y+ Sbjct: 1 METKVFSIDGSEVRSIELNDQVFNREVSDGSIYYAVNNELANRRVGTACTKTRAEVHYSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR K + GGG FGP P + LPKK++ LA++ LS Sbjct: 61 VKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYTLPKKMKRLAMKSLLSLGVKEE 120 Query: 122 DIMVIDNLVSKECKTKYL---VTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLL 176 ++V+++ KTK L + F + LI+ D + R AA+NIP + +L Sbjct: 121 RLVVVEDFSIDSGKTKDLDLIIKNFVKDETRTILILKDDDVMVRR----AAKNIPYLRVL 176 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++L KL++ + A + L D + Sbjct: 177 SYNRLSAKELLYGRKLLVLEGAAKNLNDFY 206 >gi|294101629|ref|YP_003553487.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261] gi|293616609|gb|ADE56763.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261] Length = 207 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + GE + +S+ +FA + +V+ Q R G KGR EV Sbjct: 1 MPTVKLVSFQGEQVSDLQLSDSVFAAPIHVPAMHQVVVAQLANLRQGTHSCKGRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GGG A GP P + KKVR LALR ALS K Sbjct: 61 GRKPWRQKHTGRARHGSTRSPIWVGGGVAHGPSPRDYSQKVNKKVRRLALRSALSLKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D++ TK ++ + + LI+ D + RNIP+ + V Sbjct: 121 NLLTVVDHIDLDTPSTKEMLGFIDKMGVKKPLIVLHEPNDA-VSKSVRNIPDARAINVGN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L L+L++ A+ +E+ + Sbjct: 180 INVYDLLNYQNLILTQEAVARIEEVY 205 >gi|149072010|ref|YP_001293581.1| 50S ribosomal protein L4 [Rhodomonas salina] gi|134302961|gb|ABO70765.1| 50S ribosomal protein L4 [Rhodomonas salina] Length = 216 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V L GE S++ + P+ +L R + Q+ R G S K RSEV G K + Sbjct: 11 VHTLAGEATSETSITLSVQDTNPKY-LLHRAIVAQNNGLRQGTSSCKTRSEVRGGGKKPW 69 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG AR S + ++GGG AFGP P + K LAL AL +F + +V Sbjct: 70 KQKGTGNARSGSSNSPLWKGGGVAFGPQPRSYAKKMNTKEWRLALNTALQSRF--DKTVV 127 Query: 126 IDNLVS--KECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++ + K KTK V + D S+ +I ++ N L+ RN+ N+ LL Sbjct: 128 VEDFSNSIKNPKTKNAVEVLSKITNIADNSSKTLIILSDVNDNVNLSLRNLSNVTLLRSN 187 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N+ DIL +K++++ A++ +++ + Sbjct: 188 TLNIRDILLANKIIITDKALQNIQEVY 214 >gi|1350752|sp|P49226|RL4_MORMO RecName: Full=50S ribosomal protein L4 gi|1037107|gb|AAB41513.1| L4 [Morganella morganii] Length = 200 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 1/193 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 +D ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTG Sbjct: 6 KDAQSLTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTG 65 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR S +R GG F P + KK+ AL+ LS+ + +++++ Sbjct: 66 RARSGSIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFAV 125 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + KTK LV + + + L + +I+ ++D N LAARN+ +++ V I+ ++ K Sbjct: 126 EAPKTKLLVQKLKDMALEDVMIVT-HEVDENLFLAARNLYKVDVRDVTAIDPVSLIAFGK 184 Query: 192 LVLSKSAIEALED 204 +V++ A++ +E+ Sbjct: 185 VVMTAEAVKQVEE 197 >gi|111115308|ref|YP_709926.1| 50S ribosomal protein L4 [Borrelia afzelii PKo] gi|123145710|sp|Q0SN28|RL4_BORAP RecName: Full=50S ribosomal protein L4 gi|110890582|gb|ABH01750.1| ribosomal protein L4 [Borrelia afzelii PKo] Length = 209 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR ++ + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTRRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|52840575|ref|YP_094374.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603556|sp|Q5ZYP2|RL4_LEGPH RecName: Full=50S ribosomal protein L4 gi|52627686|gb|AAU26427.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 202 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 8 DTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 67 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 68 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLVVVSDFQC 127 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++SNALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 128 DNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 186 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 187 VVVTEAAIKKIEEQLQ 202 >gi|148361052|ref|YP_001252259.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby] gi|166234680|sp|A5IHR3|RL4_LEGPC RecName: Full=50S ribosomal protein L4 gi|148282825|gb|ABQ56913.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby] Length = 201 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 7 DTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 67 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLVVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++SNALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 127 DNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|71278848|ref|YP_267621.1| 50S ribosomal protein L4 [Colwellia psychrerythraea 34H] gi|109893587|sp|Q487Z4|RL4_COLP3 RecName: Full=50S ribosomal protein L4 gi|71144588|gb|AAZ25061.1| ribosomal protein L4 [Colwellia psychrerythraea 34H] Length = 201 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 5/202 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELSLKDASG----ALEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + +K+ A+ LS+ Sbjct: 57 AKPWRQKGTGRARAGTTRGPIWRTGGVTFAAKPQDHSQKVNRKMYRGAIASILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++N + KTK LV + + L+L + LI+ ++D N L+ARN+ +++ V I Sbjct: 117 RLVVVENFSVETPKTKELVAKLKGLELKDVLIVT-KEVDENLFLSARNLYKVDVRDVAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 + ++ K++++ A++ +E Sbjct: 176 DPVSLVGFEKVLITADAVKEIE 197 >gi|94500992|ref|ZP_01307517.1| Ribosomal protein L4 [Oceanobacter sp. RED65] gi|94426932|gb|EAT11915.1| Ribosomal protein L4 [Oceanobacter sp. RED65] Length = 200 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 101/189 (53%), Gaps = 1/189 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++VS+ FA + ++ +++ R G K RS+V+ G+K + QKGTGRAR Sbjct: 10 TVTVSDVAFARDYNESLVHQLVTAYLAGARQGSKAQKNRSDVSGGGAKPWRQKGTGRARA 69 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 + +R GG F P L KK+ A++ S+ + ++V+D+ + K Sbjct: 70 GTSRSPIWRTGGVTFAARPRNYEQKLNKKMYRAAMQAIWSELVRQDRLVVVDSFDVESHK 129 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK ++ +DLSN L++D ++ +N LA+RN+P++ + G++ ++ K++++ Sbjct: 130 TKAFASKLSDMDLSNVLVVD-SEVSQNVYLASRNLPHVAVAEATGVDPVSLVSFEKVLVT 188 Query: 196 KSAIEALED 204 A++ +E+ Sbjct: 189 VPALKKVEE 197 >gi|4680695|gb|AAD27737.1|AF132962_1 CGI-28 protein [Homo sapiens] Length = 311 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 14/211 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGGKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKA------FGPVPIIGVHALPKKVRSLALRHALSDKF 118 + RH + Q A + P P + LP KVR+L L+ AL+ K Sbjct: 128 LAAE-----RHWAGPAWQHPLSALARRRCCPWPPGPTSYYYMLPMKVRALGLKVALTVKL 182 Query: 119 CSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINL 175 +D+ ++D+L +YL + +R S L+ + ++ ++ A + NL Sbjct: 183 AQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNL 242 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+NV+ +L+ LVL+ + LED+ Sbjct: 243 IPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|300870646|ref|YP_003785517.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000] gi|46577291|sp|Q9FA03|RL4_BRAPL RecName: Full=50S ribosomal protein L4 gi|11036694|gb|AAG27265.1| L4 ribosomal protein [Brachyspira pilosicoli] gi|300688345|gb|ADK31016.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000] Length = 215 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 8/214 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ + N +G+ G + V ++IF + +L ++ + +R G +K R+EV+ G Sbjct: 1 MEVVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGGK P P + LPKK++ AL LS K+ +N Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN----ALIIDGCQ-LDRNFQ---LAARNIPNI 173 + V ++ KTK + + + N A ++ + L N+ L+ RNI ++ Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNSRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ ++++ + ++ +K+A+ L R K Sbjct: 181 KLVNADSMSIHPLYYADEVYFTKTALSKLNARIK 214 >gi|189501210|ref|YP_001960680.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides BS1] gi|226730638|sp|B3EP60|RL4_CHLPB RecName: Full=50S ribosomal protein L4 gi|189496651|gb|ACE05199.1| ribosomal protein L4/L1e [Chlorobium phaeobacteroides BS1] Length = 208 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G V+++++ +F+ + + + ++ +R G K+K RSEV Sbjct: 1 MELKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV+ LA R AL++K Sbjct: 61 GRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ V + KT+ + + L L S ++ + + + RNIP + ++ Sbjct: 121 GGIVVVEDFVFDQIKTRQMAEVLKNLGLDSRKTLMLMPEHNDIIVRSGRNIPKLQVVVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + YDIL +++ K+A++ +E+ Sbjct: 181 NASTYDILDSQTVLVQKTALKKIEE 205 >gi|296105879|ref|YP_003617579.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99 Alcoy] gi|295647780|gb|ADG23627.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99 Alcoy] Length = 201 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 7 DTKSKLKLNKEIFAYTYNEGLVHQAVVAFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 67 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLVVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++SNALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 127 DNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|93005315|ref|YP_579752.1| 50S ribosomal protein L4 [Psychrobacter cryohalolentis K5] gi|109893625|sp|Q1QDI5|RL4_PSYCK RecName: Full=50S ribosomal protein L4 gi|92392993|gb|ABE74268.1| LSU ribosomal protein L4P [Psychrobacter cryohalolentis K5] Length = 200 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S+ F + + ++ +V+ R G K R+EV+ G K + QKGTGRAR Sbjct: 11 VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG+AF P + +K+ A++ L++ +++++ + KT Sbjct: 71 SIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILVEEISVSGPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L+ S ALI+ ++D N LAARNIP++N+L ++ ++ K++++ Sbjct: 131 KELIAKLGELNASRALIVT-KEVDENLYLAARNIPHVNVLDTSEVDPVSLIAFDKVIMTV 189 Query: 197 SAIEALED 204 A + E+ Sbjct: 190 EAAKQFEE 197 >gi|88860958|ref|ZP_01135594.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2] gi|88817171|gb|EAR26990.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2] Length = 201 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 103/190 (54%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + VSE F + + ++ +V+ + R G K RSEV+ G K + QKGTGRAR Sbjct: 10 GALEVSEATFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGGKKPWNQKGTGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 + +R GG F P + +K+ A++ LS+ + ++V+++ + Sbjct: 70 AGTIRSPIWRSGGVTFAAKPQDHSQKVNRKMYRGAIKSILSELVRQDRLVVVESFGIEAP 129 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK LV + + L+L + LI+ ++D N L++RN+ +++ V GI+ ++ K+++ Sbjct: 130 KTKQLVAKLKELELKDVLIVT-EEVDENLFLSSRNLYKVDVRDVAGIDPVSLIAFDKVLI 188 Query: 195 SKSAIEALED 204 + +A++ LE+ Sbjct: 189 TAAAVKQLEE 198 >gi|47094373|ref|ZP_00232067.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b H7858] gi|47017255|gb|EAL08094.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b H7858] Length = 149 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%) Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 Q+RGGG FGP P + LPKKVR LA++ LS K ++V++ L KTK Sbjct: 24 QWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAA 83 Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 + + + +I N +L+ARN+ I ++P + I+V ++ + KL+++K+A+E Sbjct: 84 FLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEK 143 Query: 202 LED 204 +E+ Sbjct: 144 VEE 146 >gi|70997242|ref|XP_753373.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293] gi|66851009|gb|EAL91335.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293] gi|159126901|gb|EDP52017.1| 50S ribosomal protein L4 [Aspergillus fumigatus A1163] Length = 252 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 10/193 (5%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 V+ + + ++ IL R + ++ R G + +K R +V +G K+Y QKGTGRAR Sbjct: 43 VVEYPRNHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGKKLYAQKGTGRARV 102 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 K RGGG AFGP P +LP+K+ A R ALS ++ +++IDN +S E Sbjct: 103 GDKKSPIRRGGGVAFGPHPRDFATSLPRKIYDQAWRIALSYRYKRGQLIIIDNEISIPEG 162 Query: 135 KTKYLVTRFRALDL------SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDIL 187 T +L+ ++ + LI D QL+ R + + +L + ++V D+L Sbjct: 163 ATPHLIKEIFKVNCWGREFGRSTLITD--QLNEGLFETVREVGEHAKILNRKDVDVKDLL 220 Query: 188 RCSKLVLSKSAIE 200 +LV+ K A++ Sbjct: 221 ETGRLVIEKQALD 233 >gi|269468076|gb|EEZ79790.1| ribosomal protein L4 [uncultured SUP05 cluster bacterium] Length = 204 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V N+ VS+ IFA + ++ +V R G K RS V+ G Sbjct: 1 MKLKVLNVSTNKSSSTEVSDSIFARDYNESLVHQVTTAYMAGGRQGSKAQKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KKPWNQKGTGRARAGTSRGPIWRSGGVTFAAQPRSYAQKVNKKMYKGAISIIFSELVRSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ + K+ KTK + T +AL+L +AL++ +LD N L++RN+ ++ + Q I Sbjct: 121 RLKVVKDFEVKDAKTKNITTLLKALNLKDALLMTD-ELDENLYLSSRNLYHVGVCDTQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 + ++ +V++++A++ +E Sbjct: 180 DPVSLIGYENVVMTEAALKKME 201 >gi|83584315|gb|ABC24932.1| plastid 50S ribosomal protein L4 family [Prototheca wickerhamii] Length = 228 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 69/133 (51%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 N G G ++ D+F + IL RV+RWQ ++ G K+K R+EV G K Q Sbjct: 75 NHRGRSVGSFTLGGDVFNTVVRPDILHRVVRWQLAARQQGTHKTKTRTEVRGGGRKPRPQ 134 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG G +R S Q+RGGG A GPVP L K +R L LR ALS K ++++D Sbjct: 135 KGGGVSRQGSIRAPQWRGGGVAHGPVPRSHAIKLLKSIRRLGLRSALSAKAREGRLVIVD 194 Query: 128 NLVSKECKTKYLV 140 L E KT+ L Sbjct: 195 TLRLPEAKTRALA 207 >gi|134096320|ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arsenicoxydans] gi|166234675|sp|A4G9T7|RL4_HERAR RecName: Full=50S ribosomal protein L4 gi|133740223|emb|CAL63274.1| 50S ribosomal subunit protein L4 [Herminiimonas arsenicoxydans] Length = 206 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L KTK L + + + L + L+I LD N LA+RN+PN+ + + Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDS-LDENLLLASRNLPNVLICEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K A+ +E+ Sbjct: 180 ADPVSLVFYKKILITKLALAKIEE 203 >gi|301633449|gb|ADK87003.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae FH] Length = 212 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 9/185 (4%) Query: 29 QQGILARVLRWQ-SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGG 87 QQ + VL Q SWR+ +KG EV G K Y QK TG+AR S F GGG Sbjct: 31 QQPVFDAVLVEQASWRQGTHSILTKG--EVRGGGKKPYKQKHTGKARQGSTRNPHFVGGG 88 Query: 88 KAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVID-NLVSK-ECKTKYLVTRFR 144 FGP P L KK + AL S+K S++ ++D NL +K E KTK +V + Sbjct: 89 IVFGPKPNRNYSLKLNKKAHTAALHTVWSEKLASDNTHLVDQNLFNKTEGKTKVMVQFLK 148 Query: 145 ALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + L N L + L+ N + + NI N+ + + ++V D++ + L++ K ++AL Sbjct: 149 SAKLLDKNVLFVVNT-LNTNLEQSTSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKAL 207 Query: 203 EDRFK 207 E +FK Sbjct: 208 EGKFK 212 >gi|88704377|ref|ZP_01102091.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71] gi|88701428|gb|EAQ98533.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71] Length = 205 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ E G +SVS+ FA + + ++ +V+ R G K RS+V+ G Sbjct: 1 MELSILKPGNESAGTLSVSDANFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ AL+ +S+ + Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIMSELTRQD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK LV + +++AL+I Q++ N LA+RN+ +++ VQ I Sbjct: 121 RLVVVETLDLDAPKTKLLVNQLDGYGVNSALLI-ADQVNENLYLASRNLQKVDVRDVQAI 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + +L K++++ AI+ +E+ Sbjct: 180 DPVSLLAHDKVMVTVDAIKKIEE 202 >gi|254442040|ref|ZP_05055516.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235] gi|198256348|gb|EDY80656.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235] Length = 211 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 14/195 (7%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 DKG+ +V E + A Q+ R G + +K R EV G K + QKGTGR Sbjct: 27 DKGLQAVKEVVVA--------------QAANGRQGSASTKTRGEVRGGGKKPWRQKGTGR 72 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR S + GGG FGP P + KKV++LA AL D+ I+VID+L Sbjct: 73 ARAGSNRSPIWVGGGIVFGPRPRDYSKKINKKVKTLAFGRALVDRISDESIVVIDSLDIA 132 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK R + +++ +L LA RN+ ++L ++V D+ + + Sbjct: 133 PAKTKVAEGLVRGIAPKGKVLVIDKELSDTSVLALRNLVGVDLEEASLVSVTDLCQFKTI 192 Query: 193 VLSKSAIEALEDRFK 207 ++++S ++ L +R K Sbjct: 193 IVTRSGLDVLVERAK 207 >gi|163859272|ref|YP_001633570.1| 50S ribosomal protein L4 [Bordetella petrii DSM 12804] gi|226730624|sp|A9IIZ9|RL4_BORPD RecName: Full=50S ribosomal protein L4 gi|163263000|emb|CAP45303.1| 50S ribosomal protein L4 [Bordetella petrii] Length = 205 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +V+ R G K R+EV +T Sbjct: 1 MDLKLLNDQGQ-AATFSAPDTIFGRDFNEALVHQVVVAYQANARSGNRAQKDRAEVKHTT 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D + KTK V + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVDTFGLESPKTKLAVAKLKSLGLDSVLIITDA-VDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEE 202 >gi|322378778|ref|ZP_08053207.1| 50S ribosomal protein L4 [Helicobacter suis HS1] gi|322380627|ref|ZP_08054779.1| 50S ribosomal protein L4 [Helicobacter suis HS5] gi|321146949|gb|EFX41697.1| 50S ribosomal protein L4 [Helicobacter suis HS5] gi|321148808|gb|EFX43279.1| 50S ribosomal protein L4 [Helicobacter suis HS1] Length = 206 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R EV+ G K + QKG GRAR S + F GGG + G H + K Sbjct: 42 RANTAKSKNRGEVSGGGRKPWSQKGGGRARAGSITSPVFVGGGVSHGATNERNYHLKINK 101 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL +AL+ K ++ ++V++N+ KTK + L + L+I LD N Sbjct: 102 KQKKLALEYALAQKALADKLVVMENIQIPSKKTKDAHAFLKNLGFRDVLLIQHA-LDENS 160 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+PN L+ +N Y + S +++ +SA EAL Sbjct: 161 VLAFRNLPNCFLVESSEVNGYIVAAFSAVIMERSAFEAL 199 >gi|296113796|ref|YP_003627734.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4] gi|295921490|gb|ADG61841.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4] gi|326562141|gb|EGE12469.1| 50S ribosomal protein L4 [Moraxella catarrhalis 7169] gi|326564494|gb|EGE14720.1| 50S ribosomal protein L4 [Moraxella catarrhalis 46P47B1] gi|326565677|gb|EGE15840.1| 50S ribosomal protein L4 [Moraxella catarrhalis 12P80B1] gi|326566246|gb|EGE16398.1| 50S ribosomal protein L4 [Moraxella catarrhalis 103P14B1] gi|326567102|gb|EGE17224.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC1] gi|326568366|gb|EGE18446.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC7] gi|326572267|gb|EGE22262.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC8] gi|326574609|gb|EGE24549.1| 50S ribosomal protein L4 [Moraxella catarrhalis O35E] gi|326574865|gb|EGE24795.1| 50S ribosomal protein L4 [Moraxella catarrhalis 101P30B1] gi|326576189|gb|EGE26104.1| 50S ribosomal protein L4 [Moraxella catarrhalis CO72] Length = 200 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 1/197 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R EV+ G K + Q Sbjct: 2 NLKTVTGAAVELSEITFGREFNEALVHQVVTAYLAGARQGTRAQKTRGEVSGGGKKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGG+AF P + +K+ A++ L++ ++++D Sbjct: 62 KGTGRARAGSIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQERLVLVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK L+ + L+ ALI+ ++D N LAARNIP +N+L + ++ ++ Sbjct: 122 DIAVSAPKTKELIAKLAELNAPRALIVT-HEVDENLYLAARNIPYVNVLGTREVDPVSLV 180 Query: 188 RCSKLVLSKSAIEALED 204 K++++ A + E+ Sbjct: 181 SFDKVIMTVEAAKQFEE 197 >gi|323357371|ref|YP_004223767.1| ribosomal protein L4 [Microbacterium testaceum StLB037] gi|323273742|dbj|BAJ73887.1| ribosomal protein L4 [Microbacterium testaceum StLB037] Length = 220 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V DG+ G + + DIF +K ++ +V+ Q R G +K R EV+ G Sbjct: 6 LALDVVKADGKKAGSVELPADIFDVKTNIPLIHQVVVAQRAAARQGTHSTKRRGEVSGAG 65 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S GGG GP P PKK+ + AL ALSD+ Sbjct: 66 RKPFKQKGTGNARQGSIRAPHMTGGGIVHGPKPRDYSQRTPKKMIAAALLGALSDRARGQ 125 Query: 122 DIMVIDNL-VSKECKTK-YLVTRFRALDLSNALIIDGCQLDRNFQL---AARNIPNINLL 176 + ++D+ + TK + N L++ ++R+ +L + RN+ +++L Sbjct: 126 RLHIVDSFAIEGAPSTKAAAAALKAFGAVKNVLVV----IERDDELTIKSVRNLAYVHVL 181 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V +K+A +A Sbjct: 182 TVGQLNTYDVVVSDDIVFTKAAYDAF 207 >gi|303256451|ref|ZP_07342465.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium 1_1_47] gi|331000645|ref|ZP_08324298.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT 11859] gi|302859942|gb|EFL83019.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium 1_1_47] gi|329570857|gb|EGG52568.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT 11859] Length = 206 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ ++ ++ +F + + ++ +++ R+G R V ++ Sbjct: 1 MELKVVNDQGQQTATLAAADTVFGREYNEALVHQIVVAYQANARLGTRAQLTREAVHHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ A+ LS Sbjct: 61 RKPWRQKGTGRARAGMSSSPVWRGGGRAFPNTPDENFTQKVNKKMMRGAMACILSKLAID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N+ KTK + +A+ L++ALII ++ N LA+RN+ N+ ++ + Sbjct: 121 GRLVVVENIDVDTPKTKNFANKLKAMGLNSALIITD-EISENLDLASRNLKNVWVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++K+AI LE+ + Sbjct: 180 ADPVSLVHFDSVVVTKAAISKLEEMW 205 >gi|237747366|ref|ZP_04577846.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS] gi|229378717|gb|EEO28808.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS] Length = 206 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 4 LSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + ++ L+G D+ V + + IF + + ++ +++ R G + K R VA+T Sbjct: 1 MELKLLNGSDQAVGKVEAPDTIFGREYNEALIHQIVVAFQANARTGDRQQKSRETVAHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNTPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VI+ L KTK L + + ++ L+I D N LA+RN+PN+ ++ Sbjct: 121 DRLTVIEGLAIDAPKTKMLAQKLKGFGFNSVLVITDV-FDENLYLASRNLPNVLVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ ++++K+A+ +E+ Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEE 203 >gi|281422250|ref|ZP_06253249.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205] gi|281403755|gb|EFB34435.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205] Length = 209 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 111/204 (54%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV ++ G++ G +++++ +F ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLDIKGQETGRKVALNDAVFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYRFKLNKKVKILARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQ 179 + I+++++ + KTK ++ + L + ++ + ++N L+ARN+ ++ Sbjct: 121 SAIVMLEDFTFEAPKTKEFLSIIKNLKIEGKKVLFVLPESNKNVYLSARNLQRAEVILAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L +V+++ ++E ++ Sbjct: 181 NVNSYKVLNADVVVITEKSLETID 204 >gi|326499386|dbj|BAJ86004.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 315 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V N GE G +++ DI A P + ++ R L R G + + R EV G Sbjct: 64 LPVINFTGEKVGEVAL--DIKAAPPSTARAVVHRALITDRQNARRGTASTLTRGEVRGGG 121 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ +N Sbjct: 122 RKPYGQKKTGKARRGSVRTPLRPGGGVIFGPKPRDWTIKINRKEKRLAISTALASAAVAN 181 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + +T+ V + LD + +LD N + + RNI + +L Sbjct: 182 DSFVVQEFDEEFATGPRTRDFVAALQRWGLDPREKAMFFSTELDDNVRPSGRNIGTLKML 241 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL K + +AIE L R+ Sbjct: 242 TPRTLNLYDILDARKHFFTPAAIEYLNSRY 271 >gi|160872138|ref|ZP_02062270.1| ribosomal protein L4/L1 family [Rickettsiella grylli] gi|159120937|gb|EDP46275.1| ribosomal protein L4/L1 family [Rickettsiella grylli] Length = 205 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 99/188 (52%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +SE +F + + ++ +V+ R G K RS V G K + QKG GRAR Sbjct: 15 LQLSETVFGCRFNEPLVHQVVTAYLAGGRQGSRAQKNRSAVRGGGRKPWKQKGMGRARAG 74 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F + KK+ A+R S+ N +V+++ ++ KT Sbjct: 75 TIRSPLWRGGGVTFAASKQDFTQKINKKMYRFAIRSICSELLRQNRFVVLESFEIEKPKT 134 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 + LV ++L++S ++I +++ LAARN+P++ L V+ IN ++ C K++++ Sbjct: 135 RDLVALLQSLNISQKILIVLEEVNEVTYLAARNLPHVELTDVEAINPVGLIDCQKVLITA 194 Query: 197 SAIEALED 204 +A++ +E+ Sbjct: 195 TALKQIEE 202 >gi|294341609|emb|CAZ90026.1| 50S ribosomal protein L4 [Thiomonas sp. 3As] Length = 206 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L N G+ VS ++F + ++ +++ R+G K R+ V ++ Sbjct: 1 MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + KK +R S Sbjct: 61 RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D + KTK + + +A+ + +II DG D N LAARN+PN+ ++ + Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADGA--DENLFLAARNLPNVLVVEPR 178 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 + +L K++++K A+ L++ Sbjct: 179 YADPLSLLFYKKVMMTKGAVSQLQE 203 >gi|282891948|ref|ZP_06300427.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498208|gb|EFB40548.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 227 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 20/224 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V ++ G + G + V + ++ + R + +KGRSEV ++ Sbjct: 1 MALLKVFDIKGNEVGELEVDSTFAEAQINSQVVKDYVTALRANARQWSANTKGRSEVKHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKG GRAR S Q+RGGG+ FGP P H + KK R +R + +K Sbjct: 61 TKKPHPQKGGGRARQGSLVAPQYRGGGRVFGPKPKFDQHVRINKKERKAVIRFLIGEKIR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-------------------CQLD 160 +N + V+ + +E KTK++ +S + G C+ Sbjct: 121 NNALTVVQDFHMEEPKTKHVADFLEKQGISGRTLFIGEGNFVQVGNDNDGKKVSVRCEQH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 NF + RN+ I ++ YD++ +++ SA+E L++ Sbjct: 181 DNFIKSIRNLQKIEFALTSHVSGYDVIVAKNMIVGASALEQLKE 224 >gi|221133615|ref|ZP_03559920.1| 50S ribosomal protein L4 [Glaciecola sp. HTCC2999] Length = 201 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ + + VS+ F + + ++ +V+ R G K RSEV G Sbjct: 1 MELTLKDANS----ALEVSDATFGREFNEALVHQVVVAFGAGARQGTKAQKTRSEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG+AF P + KK+ A+R LS+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIRSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L+ DL++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLIVVEKFGVEAPKTKELLNALSTYDLNDVLIVT-PEVDENLFLASRNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLITADAVKQLEE 198 >gi|121592713|ref|YP_984609.1| 50S ribosomal protein L4 [Acidovorax sp. JS42] gi|222109494|ref|YP_002551758.1| 50S ribosomal protein l4 [Acidovorax ebreus TPSY] gi|166234627|sp|A1W2Q8|RL4_ACISJ RecName: Full=50S ribosomal protein L4 gi|254803732|sp|B9MB74|RL4_DIAST RecName: Full=50S ribosomal protein L4 gi|120604793|gb|ABM40533.1| LSU ribosomal protein L4P [Acidovorax sp. JS42] gi|221728938|gb|ACM31758.1| ribosomal protein L4/L1e [Acidovorax ebreus TPSY] Length = 206 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L + ++I ++D N LA+RN+ N+ + + Sbjct: 121 GRLAVVDSLKLDTPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVTEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|187476540|ref|YP_784564.1| 50S ribosomal protein L4 [Bordetella avium 197N] gi|109893578|sp|Q2L2F7|RL4_BORA1 RecName: Full=50S ribosomal protein L4 gi|115421126|emb|CAJ47610.1| 50S ribosomal protein L4 [Bordetella avium 197N] Length = 205 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQ-AATFSAPDTIFGRDFNEALVHQIVVAYQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D + KTK + +AL L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVDTFSLESPKTKLAAEKLKALGLDSVLIITDT-VDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEE 202 >gi|239817872|ref|YP_002946782.1| 50S ribosomal protein L4 [Variovorax paradoxus S110] gi|319796216|ref|YP_004157856.1| ribosomal protein l4/l1e [Variovorax paradoxus EPS] gi|259491580|sp|C5CP52|RL4_VARPS RecName: Full=50S ribosomal protein L4 gi|239804449|gb|ACS21516.1| ribosomal protein L4/L1e [Variovorax paradoxus S110] gi|315598679|gb|ADU39745.1| ribosomal protein L4/L1e [Variovorax paradoxus EPS] Length = 206 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKYDAPETVFGRDYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFSQKINKKMYRAGMAAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L RF+A++L + L+I ++D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLTVDSPKTKPLAARFKAMNLESVLVI-AEEVDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K A++ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAVDKLKEMF 205 >gi|220906720|ref|YP_002482031.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7425] gi|254803729|sp|B8HMQ5|RL4_CYAP4 RecName: Full=50S ribosomal protein L4 gi|219863331|gb|ACL43670.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7425] Length = 210 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +++ G + G ++ + + I+ R LR Q R G + +K R+EV Sbjct: 1 MVACVIKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + K R LALR AL + S Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALISR--S 118 Query: 121 NDIMVIDNLVSK--ECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 + ++V+++ K KTK L + R+ L+I + D L+ARNI + L Sbjct: 119 DSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQD-TIYLSARNIATVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L +V + A+ +++ + Sbjct: 178 IQATSLNVFDLLNADWIVATVEALGKIQEVY 208 >gi|302851169|ref|XP_002957109.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f. nagariensis] gi|300257516|gb|EFJ41763.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f. nagariensis] Length = 246 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 8/199 (4%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 DG +KG ++ + A + +G++ R L R G + +K RSEV G K Y QKG Sbjct: 39 DGSEKGNQQLALKV-AEESAKGLVHRYLVLVQQNARQGTASTKTRSEVRGGGKKPYAQKG 97 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TG AR S F GGG FGP P ++ KK + LAL AL + + D++V+++L Sbjct: 98 TGNARRGSSVSPLFPGGGVTFGPKPKDWKISMNKKEKRLALATAL--QSAAADMIVVESL 155 Query: 130 VS--KECKTKYLVTRFRALD---LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 KE KTK +V L +S +++ + LA RNI + +NV Sbjct: 156 DGKLKETKTKEMVALLEKLGADVMSRKVLLITKDARPDLHLAGRNIAKLTFNTASSLNVL 215 Query: 185 DILRCSKLVLSKSAIEALE 203 DIL +++ A+ ++ Sbjct: 216 DILHADHIIVEDEALAHIQ 234 >gi|157737004|ref|YP_001489687.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018] gi|315636196|ref|ZP_07891450.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22] gi|226730613|sp|A8ESU4|RL4_ARCB4 RecName: Full=50S ribosomal protein L4 gi|157698858|gb|ABV67018.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018] gi|315479557|gb|EFU70236.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22] Length = 203 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R +++K R+EV+ G K QKG+G AR SK F GGG+AFGP + KK Sbjct: 43 RANTARAKTRAEVSGGGKKPKAQKGSGAARWGSKRSPLFVGGGQAFGPTKRNYNQKVNKK 102 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNF 163 ++LAL++AL+ + + + V+D+L + KTK V ++ + LI+ C +D Sbjct: 103 QKALALKYALNAQANNGSLFVVDSLKIESGKTKEAVAVLSKINKRDTLIV--CDVIDEKT 160 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RNI N ++ Q +N Y I +++ KS ++AL Sbjct: 161 YLAFRNIKNCYMVEKQEVNAYLIAVYHSVLIEKSVLDAL 199 >gi|241765218|ref|ZP_04763201.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN] gi|241365098|gb|EER59977.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN] Length = 206 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKFEAPETVFGREYNEDLVHQIVVAYQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMSAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K++++K AI+ L++ F Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLKEMF 205 >gi|254362073|ref|ZP_04978198.1| ribosomal protein L4 [Mannheimia haemolytica PHL213] gi|153093629|gb|EDN74594.1| ribosomal protein L4 [Mannheimia haemolytica PHL213] Length = 200 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 11 LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +R G F P + K++ A++ LS+ + ++V++ KT Sbjct: 71 DIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRGAIKSILSELVRQDRLVVVEKFEIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + + L++ALII +D N LAARN+ +++ VQGI+ ++ K+V++ Sbjct: 131 KVLAQKLKDMALNDALIIT-ANVDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVVVTV 189 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 190 DAVKQIEE 197 >gi|188535277|ref|YP_001909074.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99] gi|226730663|sp|B2VK63|RL4_ERWT9 RecName: Full=50S ribosomal protein L4 gi|188030319|emb|CAO98208.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99] Length = 201 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R S +R GG F + KK+ AL+ LS+ + ++V++ + Sbjct: 69 RAGSVKSPIWRSGGVTFAAKSQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEQFSLEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + + + L + LII G +L+ N LAARN+ +++ GI+ ++ K+V Sbjct: 129 PKTKLLAEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVV 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 MTADAVKQVEE 198 >gi|88812756|ref|ZP_01128002.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231] gi|88789994|gb|EAR21115.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231] Length = 201 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +R E G + VSE F + ++ ++ +V+ R G K R+ V G Sbjct: 1 MELPLR----EGAGAVQVSERTFGAEFKEPLIHQVVVAYLAGGRAGSKAQKDRAAVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +RGGG++F P + +K+ ALR LS+ Sbjct: 57 AKPWRQKGTGRARAGSIRSPLWRGGGRSFASAPRDHSQKVNRKMYRGALRAILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++ + KTK L+ +L ++ LI+ + N +LAARN+ +++ + Sbjct: 117 RLCVMERFDLAQPKTKLLLDELGSLGFADVLIVSN-EPSENVRLAARNLAAVDVWETNRL 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N +LR K++L+ A+ LE+ Sbjct: 176 NPVVLLRHEKVLLTVDAVHRLEE 198 >gi|71065060|ref|YP_263787.1| 50S ribosomal protein L4 [Psychrobacter arcticus 273-4] gi|109893624|sp|Q4FUF5|RL4_PSYA2 RecName: Full=50S ribosomal protein L4 gi|71038045|gb|AAZ18353.1| LSU ribosomal protein L4P [Psychrobacter arcticus 273-4] Length = 200 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S+ F + + ++ +V+ R G K R+EV+ G K + QKGTGRAR Sbjct: 11 VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG+AF P + +K+ A++ L++ +++++ + KT Sbjct: 71 SIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILVEEISVSGPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L ALI+ ++D N LAARNIP++N+L ++ ++ K+++S Sbjct: 131 KELIAKLNELGAPRALIVT-KEVDENLYLAARNIPHVNVLDTSEVDPVSLIAFDKVIMSV 189 Query: 197 SAIEALED 204 A + E+ Sbjct: 190 EAAKQFEE 197 >gi|323649930|gb|ADX97051.1| mitochondrial 39S ribosomal protein l4 [Perca flavescens] Length = 209 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D E G+ + D+FA+ P+ IL V WQ KRI + +K RSEV G K + QKG Sbjct: 82 DSEPLGLAQLHPDVFAVHPRLDILHEVETWQRNYKRISHASTKIRSEVRGGGRKPWKQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S ++GGG A GP P + LP KVR L+ ALS K + ++D+ Sbjct: 142 SGRARHGSIRSPLWKGGGVANGPRGPTSYFYMLPMKVRVQGLKVALSSKMAQQYLHIVDS 201 Query: 129 L 129 L Sbjct: 202 L 202 >gi|237749516|ref|ZP_04579996.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13] gi|229380878|gb|EEO30969.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13] Length = 206 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N + + G + + IF + ++ +++ R S+ K R VA+T Sbjct: 1 MELKLLNGNDQAAGKVDAPDTIFGRDYNEALIHQLVVAFQANARTADSQQKNRETVAHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNSPDQNFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VID L KTK L + + + L+I D N LA+RN+PN+ ++ Sbjct: 121 DRLTVIDQLAIDAPKTKMLAQKLKEFGFGSVLVITDS-FDENLYLASRNLPNVLVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ ++++K+A+ +E+ Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEE 203 >gi|330444114|ref|YP_004377100.1| 50S ribosomal protein L4/L1 family [Chlamydophila pecorum E58] gi|328807224|gb|AEB41397.1| ribosomal protein L4/L1 family [Chlamydophila pecorum E58] Length = 224 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 18/221 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW---RKRIGCSKSKGRSEV 57 M+ LS + GE G + VS+ F ++G L V + + KR + +K RSEV Sbjct: 1 MVLLSKFDFSGEKTGEVEVSDSFFV--QEEGGLQLVKDYLTAIRANKRQWSANTKNRSEV 58 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSD 116 +++ K + QKGTG AR + QFRGGG FGP P H + +K R A+R LS Sbjct: 59 SHSTKKPFKQKGTGNARQGCLAAPQFRGGGIVFGPRPKFDQHTRINRKERRAAIRLLLSQ 118 Query: 117 K------FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID---GCQLDRNFQLAA 167 K + D + I +L + + + + ++ L ID +L++N +L+ Sbjct: 119 KIQFEKLIVAEDSVFISSLQAPKTREALQFLKRCGVECRGVLFIDHLAHVELNQNLRLSL 178 Query: 168 RNIPNINLLPVQGINV--YDILRCSKLVLSKSAIEALEDRF 206 RN+ + V GIN+ YD+ +V+S+ A++ L R Sbjct: 179 RNLSALRGF-VYGINLNGYDLAAAHNVVISEKALQDLSKRL 218 >gi|119478686|ref|XP_001259414.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181] gi|119407568|gb|EAW17517.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181] Length = 291 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 10/180 (5%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V +G K+Y QKGTGRAR K RGGG Sbjct: 95 RKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGRKLYAQKGTGRARVGDKKSPIRRGGGV 154 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALD 147 AFGP P +LP+K+ A R ALS ++ +++IDN +S E T +L+ ++ Sbjct: 155 AFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEISIPEGATPHLIKEIFKVN 214 Query: 148 L------SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + LI D QL+ R + + +L + ++V D+L +LV+ K A++ Sbjct: 215 CWGREFGRSTLITD--QLNEGLFETVREVGEHAKILNRKDVDVKDLLETGRLVIEKQALD 272 >gi|187918345|ref|YP_001883908.1| 50S ribosomal protein L4 [Borrelia hermsii DAH] gi|119861193|gb|AAX16988.1| LSU ribosomal protein L1E [Borrelia hermsii DAH] Length = 222 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I + + +F + G + + + R+G + +K RSEV + Sbjct: 14 MERKVFSKDGQELRTIDLEDRVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +K + GGG A GP P + LP+KV+ LA R LS + Sbjct: 74 KKPWKQKGTGRARVGTKRNPIWVGGGIALGPKPRDYSYKLPRKVKRLAFRSVLSLCASAE 133 Query: 122 D-IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 D + +++N + KT+ L + + ++ +I D+ + A RNI ++ +L Sbjct: 134 DRLKIVENFTIESGKTRELASIMKHFVKINGKTVILLGNDDQMVKRAGRNIRDLKILSFN 193 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 194 RLRVVDLFYAKNLIALESAVNGLNELY 220 >gi|225561687|gb|EEH09967.1| 50S ribosomal protein L4 [Ajellomyces capsulatus G186AR] Length = 286 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + S L ++ IL R + ++ + R G + +K R +V +G K+ QKGTGRAR Sbjct: 80 LEYSHQHLLLPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTGRARLG 139 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KEC 134 K RGGG A GP P LPKKV LA R ALS ++ ++++++ ++ +E Sbjct: 140 DKKSPMLRGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEV 199 Query: 135 KTKYLVTRFRALD----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 +L F +L+I + +R F+ A+ + +L + ++V D+L Sbjct: 200 SPHWLTDVFEKNQWGKCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETG 259 Query: 191 KLVLSKSAIEAL 202 +L++ K+A++ + Sbjct: 260 RLIVEKTALDRM 271 >gi|148243216|ref|YP_001228373.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307] gi|147851526|emb|CAK29020.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307] Length = 210 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 +++ G++ G S+ + ++ R + Q R G + + RSEV G K Y Sbjct: 5 IQDWQGKEAGKASLDLKVAKETSAADLIHRAVVRQLANARQGTASTLTRSEVRGGGRKPY 64 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S GGG FGP P + +K R LALR AL + S D++V Sbjct: 65 KQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYELDMNRKERRLALRTALMSR--SEDMVV 122 Query: 126 IDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + K + KTK +++ + + +++ + N +L+ RN+P + L+ + Sbjct: 123 VKAFGDKLAKPKTKEVLSALERWGVPAGSKVLMVLADISDNVRLSVRNLPQLKLIAADQL 182 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+D+L KLV+S+ A+ +++ + Sbjct: 183 NVFDLLNAQKLVVSEDALTKIQEVY 207 >gi|32475059|ref|NP_868053.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1] gi|46577190|sp|Q7UN19|RL4_RHOBA RecName: Full=50S ribosomal protein L4 gi|32445599|emb|CAD75600.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1] gi|327540579|gb|EGF27154.1| 50S ribosomal protein L4 [Rhodopirellula baltica WH47] Length = 222 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G++ G + + A + + +L V+ KR G ++ R +V+ T Sbjct: 1 MANLPILDASGKEVGQYEIDTEQIANRVSKQLLHDVVVMYQANKRQGSHNTRTRGQVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR SK + RGGG A P + LPKK +A R A+ + Sbjct: 61 NKKMYRQKGTGNARAGSKRTNVRRGGGVARTVKPRDYSYRLPKKAIKIATRMAIRSRIDD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I+VI+ L KT + + L L+N +I D+ + RNI + + PV+ Sbjct: 121 GEIVVINELKLDAPKTSQIAQILKNLGLANTTTLIATAGDDQIIYKSGRNISGVTVEPVR 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N +L +++ ++ A++ ++D Sbjct: 181 QLNALTLLTPKRVLFTQEALDRVKD 205 >gi|240275291|gb|EER38805.1| 50S ribosomal protein L4 [Ajellomyces capsulatus H143] gi|325091126|gb|EGC44436.1| 50S ribosomal protein [Ajellomyces capsulatus H88] Length = 286 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K RGGG A G Sbjct: 95 ILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTGRARLGDKKSPMLRGGGVAHG 154 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFRALD-- 147 P P LPKKV LA R ALS ++ ++++++ ++ +E +L F Sbjct: 155 PHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLTDVFEKNQWG 214 Query: 148 --LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L+I + +R F+ A+ + +L + ++V D+L +L++ K+A++ + Sbjct: 215 KCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEKTALDRM 271 >gi|260655382|ref|ZP_05860870.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33 E1] gi|260629830|gb|EEX48024.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33 E1] Length = 207 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N GE G + +S+ +F + + +V+ Q R G + +K R EV Sbjct: 1 MPVIKILNFAGEVVGDLELSDAVFGVPFHSSAIHQVVVAQQANARQGTACAKDRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG GP P + KKVR+LA+R ALS + Sbjct: 61 GRKPWRQKHTGRARAGSIRSPLWAGGGVVHGPKPRDYFLKVNKKVRALAMRSALSVRAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ + TK +++ A+ LI+ + + N +A NI + +L + Sbjct: 121 SRLFAVEGFSLEAPSTKKMLSFLAAVGARKPLIVLDSR-NENVIRSAANIQGVKVLHMDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++R LV + + ++ LE+ + Sbjct: 180 INVLDLVRHDGLVATTAVLKRLEEVY 205 >gi|91791540|ref|YP_561191.1| 50S ribosomal protein L4 [Shewanella denitrificans OS217] gi|120596990|ref|YP_961564.1| 50S ribosomal protein L4 [Shewanella sp. W3-18-1] gi|126176354|ref|YP_001052503.1| 50S ribosomal protein L4 [Shewanella baltica OS155] gi|146294840|ref|YP_001185264.1| 50S ribosomal protein L4 [Shewanella putrefaciens CN-32] gi|152998750|ref|YP_001364431.1| 50S ribosomal protein L4 [Shewanella baltica OS185] gi|160873327|ref|YP_001552643.1| 50S ribosomal protein L4 [Shewanella baltica OS195] gi|217975200|ref|YP_002359951.1| 50S ribosomal protein L4 [Shewanella baltica OS223] gi|304412766|ref|ZP_07394368.1| ribosomal protein L4/L1e [Shewanella baltica OS183] gi|307307430|ref|ZP_07587165.1| ribosomal protein L4/L1e [Shewanella baltica BA175] gi|123357238|sp|Q12SV8|RL4_SHEDO RecName: Full=50S ribosomal protein L4 gi|166199861|sp|A3DA71|RL4_SHEB5 RecName: Full=50S ribosomal protein L4 gi|166199862|sp|A6WHS9|RL4_SHEB8 RecName: Full=50S ribosomal protein L4 gi|166199864|sp|A4YBY2|RL4_SHEPC RecName: Full=50S ribosomal protein L4 gi|166199908|sp|A1REB5|RL4_SHESW RecName: Full=50S ribosomal protein L4 gi|189042883|sp|A9KWA3|RL4_SHEB9 RecName: Full=50S ribosomal protein L4 gi|254803752|sp|B8EBK4|RL4_SHEB2 RecName: Full=50S ribosomal protein L4 gi|91713542|gb|ABE53468.1| LSU ribosomal protein L4P [Shewanella denitrificans OS217] gi|120557083|gb|ABM23010.1| LSU ribosomal protein L4P [Shewanella sp. W3-18-1] gi|125999559|gb|ABN63634.1| LSU ribosomal protein L4P [Shewanella baltica OS155] gi|145566530|gb|ABP77465.1| LSU ribosomal protein L4P [Shewanella putrefaciens CN-32] gi|151363368|gb|ABS06368.1| ribosomal protein L4/L1e [Shewanella baltica OS185] gi|160858849|gb|ABX47383.1| ribosomal protein L4/L1e [Shewanella baltica OS195] gi|217500335|gb|ACK48528.1| ribosomal protein L4/L1e [Shewanella baltica OS223] gi|304348846|gb|EFM13262.1| ribosomal protein L4/L1e [Shewanella baltica OS183] gi|306910218|gb|EFN40651.1| ribosomal protein L4/L1e [Shewanella baltica BA175] gi|315265554|gb|ADT92407.1| ribosomal protein L4/L1e [Shewanella baltica OS678] gi|319424581|gb|ADV52655.1| ribosomal protein L4/L1e [Shewanella putrefaciens 200] Length = 201 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG F + KK+ AL+ LS+ ++V+++ + KT Sbjct: 72 SVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQERLVVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + +A++L + LI+ ++D N LAARN+ +++ V G++ ++ + ++++ Sbjct: 132 KELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNTVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|325981806|ref|YP_004294208.1| 50S ribosomal protein L4/L1e [Nitrosomonas sp. AL212] gi|325531325|gb|ADZ26046.1| ribosomal protein L4/L1e [Nitrosomonas sp. AL212] Length = 206 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 IEL + N D + +I VS+++F + ++ +V+ R KGRS++A + Sbjct: 3 IEL-IGNEDQKTASII-VSDELFMRNYNEALVHQVVTSYLSNARTATRAQKGRSDIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F L KK+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPIWRGGGKIFPNSSGENFRKKLNKKMYRAGISSILSQLIRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + VI++ KTK L+ + L LSN +II ++D N L++ NIPN+ ++ V Sbjct: 121 NRLHVIESFCVDSYKTKALLMKLENLGLSNVMIITD-EIDNNLYLSSCNIPNVAVVEVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 I+ +L+ K +++ ++ +E+ Sbjct: 180 IDPISLLKFKKTLVTSDGLKKIEE 203 >gi|118411191|ref|YP_874585.1| 50S ribosomal protein L4 [Thalassiosira pseudonana] gi|125987630|sp|A0T0X3|RK4_THAPS RecName: Full=50S ribosomal protein L4, chloroplastic gi|116739938|gb|ABK20808.1| 50S ribosomal protein L4 [Thalassiosira pseudonana] Length = 215 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%) Query: 36 VLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI 95 +LR Q +K+ G +K RSEV G K + QKGTGRAR S ++GGG FGP P Sbjct: 44 ILRHQLSQKQ-GTVSTKTRSEVRGGGKKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPK 102 Query: 96 IGVHALPKKVRSLALRHALSDKFCSNDIMV-IDNLVSKECKTK--YLVTRFRALDLSNAL 152 L KK R+LAL+ L +K DI+ + L K KTK Y + + +L+ L Sbjct: 103 TANLKLNKKERNLALQTLLYNK---RDIITQVSTLDIKNVKTKEFYNFCKEKGFNLNEKL 159 Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ + +L+ RN+ N+ L+ +N +L+ K++++ SA+ +++ + Sbjct: 160 LVIDSEKTTPLKLSTRNLKNVELISASNLNTLSLLKAKKILVTTSALNDIKEIY 213 >gi|13507905|ref|NP_109854.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae M129] gi|2500234|sp|P75579|RL4_MYCPN RecName: Full=50S ribosomal protein L4 gi|1674370|gb|AAB96313.1| ribosomal protein L4 [Mycoplasma pneumoniae M129] Length = 212 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 9/185 (4%) Query: 29 QQGILARVLRWQ-SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGG 87 QQ + VL Q SWR+ +KG EV G K Y QK TG+AR S F GGG Sbjct: 31 QQPVFDAVLVEQASWRQGTHSILTKG--EVRGGGKKPYKQKHTGKARQGSTRNPHFVGGG 88 Query: 88 KAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVID-NLVSK-ECKTKYLVTRFR 144 FGP P L KK + AL S+K S++ ++D NL +K E KTK ++ + Sbjct: 89 IVFGPKPNRNYSLKLNKKAHTAALHTVWSEKLASDNTHLVDQNLFNKTEGKTKVMMQFLK 148 Query: 145 ALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + L N L + L+ N + + NI N+ + + ++V D++ + L++ K ++AL Sbjct: 149 SAKLLDKNVLFVVNT-LNTNLEQSTSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKAL 207 Query: 203 EDRFK 207 E +FK Sbjct: 208 EGKFK 212 >gi|213408030|ref|XP_002174786.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275] gi|212002833|gb|EEB08493.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275] Length = 245 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 13/204 (6%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E G + + ++ IL + + +++ R R G + +K RSE+ +G K+ QKGTG Sbjct: 14 EPMGFLHIPRPFLTEPLRRDILQKAVVFEANRDRAGTANTKSRSEINCSGKKLRPQKGTG 73 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR S RGG A GP P +P K+ S A+R ALS++F N+++V+D+ + Sbjct: 74 RARLGDASSPMLRGGAVAHGPKPRDFTTKMPTKIFSKAMRVALSERFRQNELLVLDSPLH 133 Query: 132 KECKTKYLVTRFRAL-DLS-----NALIIDGCQLDRNFQLAARNIP-------NINLLPV 178 E T L+ F L DL I+D + R I + LP Sbjct: 134 TEQLTSKLLNAFVKLHDLGAPYGRTLFILDDLSYSTSAATNKRFIEATTSLGRHCEFLPA 193 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + + L+ KL + A L Sbjct: 194 SQLQIRHALKFGKLAIEHKAFSTL 217 >gi|260222804|emb|CBA32728.1| 50S ribosomal protein L4 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 206 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G+ E +F + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNEQGQATSKYDAPEAVFGRDYNEDLVHQVVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFGQKINKKMYRAGMASILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVESPKTKALAAKFKAMNLESVLVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPLSLVHYRKVLVTKAAMDTLKEMF 205 >gi|145628331|ref|ZP_01784132.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145640873|ref|ZP_01796455.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|144980106|gb|EDJ89765.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145274387|gb|EDK14251.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.4-21] Length = 158 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 1/155 (0%) Query: 50 KSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLA 109 + K R+EV+ +G K + QKGTGRAR +R GG F P + KK+ A Sbjct: 2 RKKTRAEVSGSGKKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGA 61 Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 ++ LS+ + ++V++ KTK LV + + L + +ALII LD N LAARN Sbjct: 62 IKSILSELVRQDRLVVVEKFELDAPKTKVLVQKLKDLAVEDALIITAS-LDENLFLAARN 120 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + +++ VQGI+ ++ K++++ A++ +E+ Sbjct: 121 LYKVDVRDVQGIDPVSLIAFDKVIVTVDAVKQIEE 155 >gi|331005013|ref|ZP_08328420.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989] gi|330421179|gb|EGG95438.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989] Length = 205 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ELS+ G KG + VSE F + Q ++ + + R G K R+ V+ Sbjct: 1 MMELSISTPKGA-KGTVEVSELTFGKEFNQDLVHQAVVSYQAAARQGSKAQKNRAAVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKG+GRAR + +R GG F P + +K+ A+R LS+ Sbjct: 60 GAKPWKQKGSGRARAGTSRGPIWRSGGVTFAAQPRNYEQKINRKMYRAAMRCILSELARQ 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V++ + KTK L++ D++ ALI+ +++ N LA+RN+ ++++ QG Sbjct: 120 DRLIVVEPIQLDAPKTKGLISYLAQFDVAEALIVT-EEVNANLYLASRNLHKVDVIDAQG 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N ++ +++++ A++ +E+ Sbjct: 179 VNPLSLVGFDRVMITVDALKKVEE 202 >gi|317968818|ref|ZP_07970208.1| 50S ribosomal protein L4 [Synechococcus sp. CB0205] Length = 211 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + R+EVA Sbjct: 1 MANCVVRDWQGKEAGKASLDLKVAKESSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSRAA- 119 Query: 121 NDIMVIDNLVS--KECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQL---AARNIPN 172 DI V+ S + KTK + ++RF S L++ LD ++ + RN+ Sbjct: 120 -DITVVKGFASGLETPKTKEITAALSRFGIAAGSKVLVV----LDAPSEVVRRSVRNLEK 174 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+ +NV+D+L + LV+S+ A+ +++ + Sbjct: 175 VKLIAADQLNVFDLLHANSLVVSEEALAKIQEVY 208 >gi|242041475|ref|XP_002468132.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor] gi|241921986|gb|EER95130.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor] Length = 297 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + R G + + R EV G Sbjct: 56 LPVLSFTGEKVGEVTL--DLKSAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRGGG 113 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S+ GGG FGP P + +K + LA+ AL+ + Sbjct: 114 KKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTALASAAVAE 173 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + KT+ V + LD + + D N +L+ RNI ++ +L Sbjct: 174 DAFVVEEFDEAFASGPKTRDFVAALQRWGLDPKQKAMFFATEFDDNVRLSGRNIGSLKML 233 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +A++ L R+ Sbjct: 234 TPRTLNLYDILDARKLFFTPAAVDYLNSRY 263 >gi|254433247|ref|ZP_05046755.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27] gi|207089580|gb|EDZ66851.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27] Length = 191 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 98/189 (51%), Gaps = 1/189 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + +S+ +F + ++ +V+ + R G K RSE G+K + QKGTGRAR Sbjct: 1 MTQLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGGGAKPFRQKGTGRARA 60 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 + +RGGG+AF P + +K+ A+R LS+ + + +ID ++ + K Sbjct: 61 GTIRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQDRLRMIDKIMLSKPK 120 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 T+ L + + + LI+ + DRN +L+ARNIP + + V ++ +++R ++++ Sbjct: 121 TRDLAKLLKPITWRSVLIVV-AEDDRNLELSARNIPTVAIRNVSRVSPVELIRFDGVLVT 179 Query: 196 KSAIEALED 204 AI E+ Sbjct: 180 GDAIRCFEE 188 >gi|294055220|ref|YP_003548878.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221] gi|293614553|gb|ADE54708.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221] Length = 212 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R+EV +G K++ QKG+G AR + V R GG A GP P + K Sbjct: 45 RQGTASTKTRAEVRGSGKKLFRQKGSGTARQGDRRVPHQRHGGVAHGPKPRDYSQKINSK 104 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRN 162 ++SLA + AL ++ + VI+ L KE KTK + ++ + LIID + N Sbjct: 105 MKSLAFQRALFERASDGGLAVIEALEVKEPKTKLFNSVLNSVLPERGRVLIIDD-NFESN 163 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LAARNI ++L ++ D+++ +++S+ IE + Sbjct: 164 AALAARNIDGVSLAEACNLSTLDVVQYRNIIVSEKGIETI 203 >gi|171060668|ref|YP_001793017.1| 50S ribosomal protein L4 [Leptothrix cholodnii SP-6] gi|226730682|sp|B1Y8I6|RL4_LEPCP RecName: Full=50S ribosomal protein L4 gi|170778113|gb|ACB36252.1| ribosomal protein L4/L1e [Leptothrix cholodnii SP-6] Length = 206 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 8/209 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +FA + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQATAKVDAPDTVFARDYNESLIHQIVVAYQANARQGTRAQKDREQVHHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-- 119 K + QKGTGRAR S +RGGG+ F P +KV R ++ F Sbjct: 61 KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNSPD---ENFTQKVNKKMYRAGMASIFSQL 117 Query: 120 --SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + VID++ KTK L + +A++L + L+I ++D N LA+RN+ N+ ++ Sbjct: 118 AREGRLAVIDSITLDAPKTKLLAAKLKAMNLDHVLVI-ADEVDENLFLASRNLANVLVVE 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + ++ K++++K+AI+ L++ F Sbjct: 177 PRYADPLSLVFYKKILVTKAAIDKLQEMF 205 >gi|54293322|ref|YP_125737.1| 50S ribosomal protein L4 [Legionella pneumophila str. Lens] gi|81601549|sp|Q5WZL1|RL4_LEGPL RecName: Full=50S ribosomal protein L4 gi|53753154|emb|CAH14601.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str. Lens] Length = 201 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 1/196 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + K + ++++IFA +G++ + + R G S K RSEV+ G K + QKGTG Sbjct: 7 DTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGGKKPWNQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR + +R GG F L KK+ ALR +S+ + +++V+ + Sbjct: 67 RARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTGNLVVVSDFQC 126 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + + +++S+ALII ++ N L +RN+ + ++ V I+ +LR K Sbjct: 127 DNHKTKDFLKKMNQMEISSALII-MSEVGENEYLGSRNLIDYDICDVTTIDPVSLLRFEK 185 Query: 192 LVLSKSAIEALEDRFK 207 +V++++AI+ +E++ + Sbjct: 186 VVVTEAAIKKIEEQLQ 201 >gi|89902554|ref|YP_525025.1| 50S ribosomal protein L4 [Rhodoferax ferrireducens T118] gi|109893628|sp|Q21RV9|RL4_RHOFD RecName: Full=50S ribosomal protein L4 gi|89347291|gb|ABD71494.1| LSU ribosomal protein L4P [Rhodoferax ferrireducens T118] Length = 206 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G E +F + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGLATAKYEAPETVFGRAYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D++ KTK L +F+A++L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSMKVDSPKTKPLAAKFKAMNLESVLVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+E L++ F Sbjct: 180 ADPVSLVHYRKVIVTKAAMEKLQEMF 205 >gi|113968545|ref|YP_732338.1| 50S ribosomal protein L4 [Shewanella sp. MR-4] gi|114045708|ref|YP_736258.1| 50S ribosomal protein L4 [Shewanella sp. MR-7] gi|123030070|sp|Q0HNT6|RL4_SHESM RecName: Full=50S ribosomal protein L4 gi|123131840|sp|Q0I0A4|RL4_SHESR RecName: Full=50S ribosomal protein L4 gi|113883229|gb|ABI37281.1| LSU ribosomal protein L4P [Shewanella sp. MR-4] gi|113887150|gb|ABI41201.1| LSU ribosomal protein L4P [Shewanella sp. MR-7] Length = 201 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 +RGGG F + KK+ AL+ LS+ + ++V+++ + KT Sbjct: 72 GVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQDRLVVVESFSVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + +A++L + LI+ ++D N LAARN+ +++ V G++ ++ + ++++ Sbjct: 132 KELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNTVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|261189683|ref|XP_002621252.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] gi|239591488|gb|EEQ74069.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] gi|239612983|gb|EEQ89970.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ER-3] gi|327352159|gb|EGE81016.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ATCC 18188] Length = 263 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 6/180 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ + R G + +K R ++ +G K+ QKGTGRAR K RGGG Sbjct: 69 RRDILHRAVVYEGDKTRQGTASTKWRDDIRGSGRKIRPQKGTGRARLGDKKSPMLRGGGV 128 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR-- 144 A GP P LPKKV LA R ALS ++ ++++++ ++ +E +L F Sbjct: 129 AHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPREVSPYWLTDVFEKN 188 Query: 145 --ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L+I + +R F+ A+ + +L + ++V D+L +L++ K+A++ + Sbjct: 189 QWGKGFGRSLMITEVKKERLFRAVAQIGQHARVLDREDVDVKDLLETGRLIVEKTALDRM 248 >gi|86605865|ref|YP_474628.1| 50S ribosomal protein L4 [Synechococcus sp. JA-3-3Ab] gi|109893645|sp|Q2JV82|RL4_SYNJA RecName: Full=50S ribosomal protein L4 gi|86554407|gb|ABC99365.1| ribosomal protein L4 [Synechococcus sp. JA-3-3Ab] Length = 326 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V+N GE G +S + + IL LR Q R G + +K R+EV G K + Sbjct: 6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPW 65 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +R GG FGP A+ +K R LALR AL + D++V Sbjct: 66 RQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRV--EDLIV 123 Query: 126 IDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ + KT+ + R+ ++ +AL+I + + A RNI + L+ + Sbjct: 124 VEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLI-VAERSEAVERAVRNIARVKLIGLDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L ++++ SA+E L+ R+ Sbjct: 183 LNVFDLLNVDWVLITTSALEKLKARW 208 >gi|32307492|gb|AAP79151.1| ribosomal protein rpL4 [Bigelowiella natans] Length = 335 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+N DG+ G +S + + +G++ R L + R G + +K +SEV G Sbjct: 112 VKLEVKNFDGQVVGSDDMSLKVARPETAKGLVHRYLMYARNSMRAGTASTKTKSEVRGGG 171 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG AR S+ GGG FGP P + +K R +A+ AL S+ Sbjct: 172 KKPYQQKKTGNARQGSRRTPLKPGGGIIFGPKPRDWSVDMNQKERRIAMATALQS--ASS 229 Query: 122 DIMVIDNLVSK--ECKTKYLVTRFRALDLSNA-----LIIDGCQLDRNFQLAARNIPNIN 174 D++++++L K KTK + + + L+++G + RN L+ARNI + Sbjct: 230 DVILVEDLDGKFESPKTKNMADFLDRVGAKPSEEKVLLVVEGQK--RNALLSARNIDKLK 287 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + + D+L K+++ K A E +++ F Sbjct: 288 INKPTSLRIIDVLGADKIIMEKKAFETMKNIF 319 >gi|121713920|ref|XP_001274571.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1] gi|119402724|gb|EAW13145.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1] Length = 292 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 10/193 (5%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 VI + + ++ IL R + ++ R G + +K R++V + K+Y QKGTGRAR Sbjct: 83 VIEYPRNHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRADVHGSNKKLYAQKGTGRARA 142 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 K RGGG AFGP P +LP+K+ A R ALS ++ +++IDN +S E Sbjct: 143 GDKKSPIRRGGGVAFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEISIPED 202 Query: 135 KTKYLVTRFRALD------LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDIL 187 T +L+ ++ + LI D QL R + + +L Q ++V D+L Sbjct: 203 ATPHLIQEIFKVNGWGREFGRSTLITD--QLKEGLFDTVRGVGEHAKILNRQDVDVKDLL 260 Query: 188 RCSKLVLSKSAIE 200 +LV+ K A++ Sbjct: 261 ETGRLVIEKQALD 273 >gi|159478579|ref|XP_001697380.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii] gi|28911891|gb|AAO53242.1| ribosomal protein L4 [Chlamydomonas reinhardtii] gi|158274538|gb|EDP00320.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii] Length = 243 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 18/207 (8%) Query: 10 DGEDKGV----ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 DG KG + V+ED +G++ R L R G + + RSEV G K Y Sbjct: 37 DGSSKGTQQLALKVAED-----SAKGLVHRYLVMVQQNARQGTASTLTRSEVRGGGKKPY 91 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG AR S F GGG FGP P ++ KK R LAL AL + + D++V Sbjct: 92 AQKGTGNARRGSSVSPLFPGGGVTFGPKPKDWSISMNKKERRLALATAL--QSATADMIV 149 Query: 126 IDNLVSK--ECKTKYLVTRFRALDLSNAL---IIDGCQLDR-NFQLAARNIPNINLLPVQ 179 +++L K + KTK +V L +NA+ ++ + +R + LA RNI + + Sbjct: 150 VESLAGKLQDTKTKSMVALLEKLG-ANAMERKVLLITKEERPDVTLAGRNIAKLTMNTAS 208 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 I+V+D+L +++ A+ ++ + Sbjct: 209 AISVFDVLNADHIIIEDEALAHVQSFY 235 >gi|24371830|ref|NP_715872.1| 50S ribosomal protein L4 [Shewanella oneidensis MR-1] gi|117918658|ref|YP_867850.1| 50S ribosomal protein L4 [Shewanella sp. ANA-3] gi|46577265|sp|Q8EK67|RL4_SHEON RecName: Full=50S ribosomal protein L4 gi|166199865|sp|A0KRM5|RL4_SHESA RecName: Full=50S ribosomal protein L4 gi|24345643|gb|AAN53317.1|AE015473_4 ribosomal protein L4 [Shewanella oneidensis MR-1] gi|117610990|gb|ABK46444.1| LSU ribosomal protein L4P [Shewanella sp. ANA-3] Length = 201 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R +RGGG F + KK+ AL+ LS+ + ++V+++ + Sbjct: 69 RAGGVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQDRLVVVESFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + +A++L + LI+ ++D N LAARN+ +++ V G++ ++ + ++ Sbjct: 129 PKTKELKAKLKAMNLEDVLIVT-SEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNTVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 VTADAVKQIEE 198 >gi|226198215|ref|ZP_03793786.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9] gi|225929735|gb|EEH25751.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9] Length = 192 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 2/190 (1%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +++ S+ +F + ++ +V+ R G K R +V +T K + QKGTGRAR Sbjct: 1 MVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTTKKPWRQKGTGRARA 60 Query: 76 SSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +RGGG+ F P H + KK+ L S + V++++V + Sbjct: 61 GMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLAREGRLSVVEDIVLEAP 120 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + + ++ K+++ Sbjct: 121 KTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRYADPLSLIYFKKVLV 179 Query: 195 SKSAIEALED 204 +K+A+ +E+ Sbjct: 180 TKAAVAQIEE 189 >gi|118411059|ref|YP_874454.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum] gi|125987629|sp|A0T0H9|RK4_PHATC RecName: Full=50S ribosomal protein L4, chloroplastic gi|116739806|gb|ABK20677.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum] Length = 215 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R S SK RSEV G K + QKGTG+AR S ++GGG FGP P L K Sbjct: 49 QRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNK 108 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR--ALDLSNALIIDGCQL 159 K R LAL+ + +K N+I++I+NL + E KTK V + ++L +++ Sbjct: 109 KERQLALQTLIYNK--KNNILIIENLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTDK 166 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +LA +N+ N+ LL +N IL+ +++L+ +AI +++ + Sbjct: 167 TSVLKLATQNLKNVELLAASSLNTLSILKARQIILTSAAINHIKESY 213 >gi|127511093|ref|YP_001092290.1| 50S ribosomal protein L4 [Shewanella loihica PV-4] gi|166199863|sp|A3Q983|RL4_SHELP RecName: Full=50S ribosomal protein L4 gi|126636388|gb|ABO22031.1| LSU ribosomal protein L4P [Shewanella loihica PV-4] Length = 201 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG +F + KK+ AL+ LS+ + ++V+++ + KT Sbjct: 72 TVKGPIWRGGGVSFAAKTQDHSQKVNKKMYRGALKSILSELVRQDRLVVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + + L + LI+ ++D N LAARN+ +++ V GI+ ++ K++++ Sbjct: 132 KELKAKLKDMKLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGIDPVSLIAFEKVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|307543826|ref|YP_003896305.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581] gi|307215850|emb|CBV41120.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581] Length = 202 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL G G + VS+ FA + ++ +V+ R G K RS+V G K + Q Sbjct: 4 NLAGAGAGTVEVSDATFAKDFNEALVHQVVTAYLAGGRQGTRAQKNRSDVRGGGKKPWRQ 63 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P + +K+ A+R LS+ ++ +D Sbjct: 64 KGTGRARAGTIRSPIWRAGGVTFAARPQDHSQKVNRKMYRAAMRSILSELVRQERLVAVD 123 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK L + L L LI+ ++D N LAARNIPN++++ V + ++ Sbjct: 124 AFGVESPKTKQLAAKLGELGLEKVLIVT-EEVDENLYLAARNIPNVDVVDVAAADPVSLV 182 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ SA+ E++ Sbjct: 183 AFDKVLVTVSALRKFEEKL 201 >gi|54020071|ref|YP_115701.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 232] gi|81603667|sp|Q601L4|RL4_MYCH2 RecName: Full=50S ribosomal protein L4 gi|148887158|sp|Q4A8H2|RL4_MYCH7 RecName: Full=50S ribosomal protein L4 gi|148887159|sp|Q4AAE1|RL4_MYCHJ RecName: Full=50S ribosomal protein L4 gi|53987244|gb|AAV27445.1| 50s ribosomal protein L4 [Mycoplasma hyopneumoniae 232] gi|144227504|gb|AAZ44280.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J] gi|144575315|gb|AAZ53567.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448] Length = 214 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 3/177 (1%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 Q I +L ++ KR+ K K R+EV+ TG K + QK TG+AR SK F GGG+A Sbjct: 39 QAIFDSILSERA-SKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAGSKRSPIFVGGGRA 97 Query: 90 FGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148 FGP + KKV+ LA ALS + N +++++ + TK LV + + + Sbjct: 98 FGPTTQRNYNLKVNKKVKKLAFISALS-QLAQNQQILVNDFSMNKISTKLLVDQLKIFKI 156 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 I D N L+ARN+PN+ L+ + V +++ L++SK+ I LE R Sbjct: 157 DQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIISKNEITNLEKR 213 >gi|239995001|ref|ZP_04715525.1| 50S ribosomal protein L4 [Alteromonas macleodii ATCC 27126] gi|332139849|ref|YP_004425587.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|332139862|ref|YP_004425600.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|226730609|sp|B4S092|RL4_ALTMD RecName: Full=50S ribosomal protein L4 gi|327549871|gb|AEA96589.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|327549884|gb|AEA96602.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] Length = 201 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ + + VSE F + + ++ +V+ R G K R+EV G Sbjct: 1 MELTLKDA----QSALEVSEATFGREFNEALVHQVVVAYGAGARQGTKAQKTRAEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG+AF P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIKSILSELIRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L++ +L++ LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLVVVEKFGVDAPKTKALISALNEYELNDVLIVT-PEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEE 198 >gi|253995719|ref|YP_003047783.1| 50S ribosomal protein L4/L1e [Methylotenera mobilis JLW8] gi|253982398|gb|ACT47256.1| ribosomal protein L4/L1e [Methylotenera mobilis JLW8] Length = 208 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 1/189 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ R KGR VA+T K Y QKGTG AR Sbjct: 17 VTVSEGTFGREFNEALVHQVVVGYMANARTATRAQKGRDTVAHTTHKPYAQKGTGNARSG 76 Query: 77 SKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +RGGG+AF P H + +K ++ LS+ + + V++ K Sbjct: 77 MSSSPIWRGGGRAFPNSPNENFSHKVNRKAYRAGMQTILSELVRQDRLSVVEEFSVDTPK 136 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK L + + + + +++ + N L++RN+ N+ ++ Q + ++R +V + Sbjct: 137 TKALAEKVKGMGYAGGVLVLTDSFNENLYLSSRNLTNVMVVEAQFADPVSLVRFPNVVAT 196 Query: 196 KSAIEALED 204 + A++ LE+ Sbjct: 197 EGAVKKLEE 205 >gi|19113019|ref|NP_596227.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces pombe 972h-] gi|74626916|sp|O74801|RL4P_SCHPO RecName: Full=60S ribosomal protein yml6, mitochondrial gi|3687498|emb|CAA21166.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces pombe] Length = 261 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 13/188 (6%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + +++ R G + SK R+E+ +G K+Y QKGTG AR S RGG K+ G Sbjct: 37 ILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAKSHG 96 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALDLSN 150 P P L +V +LA+R ALS +F +N++ +++N ++ + KT+ L+ + L + Sbjct: 97 PKPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTRILLEVLKQHKLGH 156 Query: 151 ----ALII-------DGCQLDRNFQLAARNIP-NINLLPVQGINVYDILRCSKLVLSKSA 198 AL + D + N LA+R + + + +PV V D L+ KL + A Sbjct: 157 EYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPVGEFQVRDALKFGKLFIDSEA 216 Query: 199 IEALEDRF 206 + + ++F Sbjct: 217 MSLIVEKF 224 >gi|312601075|gb|ADQ90330.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 168] Length = 214 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALP 102 KR+ K K R+EV+ TG K + QK TG+AR SK F GGG+AFGP + Sbjct: 52 KRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAGSKRSPIFVGGGRAFGPTTQRNYNLKVN 111 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KKV+ LA ALS + N +++++ + TK LV + + + I D N Sbjct: 112 KKVKKLAFISALS-QLAQNQQILVNDFSMNKISTKLLVDQLKIFKIDQLRHILIASSDPN 170 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 L+ARN+PN+ L+ + V +++ L++SK+ I LE R Sbjct: 171 LFLSARNLPNVELVKTNSLTVESLIKADLLIISKNEITNLEKR 213 >gi|37519655|ref|NP_923032.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421] gi|46577179|sp|Q7NPG9|RL4_GLOVI RecName: Full=50S ribosomal protein L4 gi|35210646|dbj|BAC88027.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421] Length = 213 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M S+++ G G + + + + ++ + Q R G + + R EV Sbjct: 1 MATCSIKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P + +K R LALR AL + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRLALRTALQSRV-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFR--ALDL-SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+D + KT+ LV F +D+ S ++++ + N L+ARN+PN+ + Sbjct: 119 EDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKV 178 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV D+L +V++ A+E +++ + Sbjct: 179 ITAGNLNVRDLLATDWIVVTGPALELIKETY 209 >gi|71893545|ref|YP_278991.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J] gi|72080532|ref|YP_287590.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448] Length = 206 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 3/177 (1%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 Q I +L ++ KR+ K K R+EV+ TG K + QK TG+AR SK F GGG+A Sbjct: 31 QAIFDSILSERA-SKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAGSKRSPIFVGGGRA 89 Query: 90 FGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148 FGP + KKV+ LA ALS + N +++++ + TK LV + + + Sbjct: 90 FGPTTQRNYNLKVNKKVKKLAFISALS-QLAQNQQILVNDFSMNKISTKLLVDQLKIFKI 148 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 I D N L+ARN+PN+ L+ + V +++ L++SK+ I LE R Sbjct: 149 DQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIISKNEITNLEKR 205 >gi|124268626|ref|YP_001022630.1| 50S ribosomal protein L4 [Methylibium petroleiphilum PM1] gi|166234685|sp|A2SLF6|RL4_METPP RecName: Full=50S ribosomal protein L4 gi|124261401|gb|ABM96395.1| LSU ribosomal protein L4P [Methylibium petroleiphilum PM1] Length = 206 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + + +F + ++ +V+ R G K R V ++ Sbjct: 1 MELELLNEQGQAASKVDAPDTVFGRDYNEALVHQVVVAYQANARQGTRAQKDRQTVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + S Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSHKVNKKMYRAGMAAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D++ + KTK L +F+A+ L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSIKVETPKTKALAAKFKAMGLESVLVI-ADEVDENLFLASRNLANVLVIEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AIE L++ Sbjct: 180 ADPLSLVFYKKVLVTKGAIEKLKE 203 >gi|114561337|ref|YP_748850.1| 50S ribosomal protein L4 [Shewanella frigidimarina NCIMB 400] gi|122301114|sp|Q089Q3|RL4_SHEFN RecName: Full=50S ribosomal protein L4 gi|114332630|gb|ABI70012.1| LSU ribosomal protein L4P [Shewanella frigidimarina NCIMB 400] Length = 201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG F + KK+ AL+ S+ ++V+++ + KT Sbjct: 72 SVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQERLVVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + +A++L + LI+ ++D N LAARN+ +++ V G++ ++ + ++++ Sbjct: 132 KELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGLDPVSLIAFNTVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|318042563|ref|ZP_07974519.1| 50S ribosomal protein L4 [Synechococcus sp. CB0101] Length = 211 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + R+EVA Sbjct: 1 MANCVVRDWQGKEAGKATLELKVAKETSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSR--A 118 Query: 121 NDIMVIDNLVS--KECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQL---AARNIPN 172 DI V+ + KTK + RF D + L++ LD ++ + RN+ Sbjct: 119 ADITVVKGFAAGLDTPKTKEITAALGRFGIADGAKVLVV----LDAPSEVVRRSVRNLEK 174 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+ +NV+D+L + LV+S+ A+ +++ + Sbjct: 175 VKLIAADQLNVFDLLHANHLVVSEEALAKIQEVY 208 >gi|225158912|ref|ZP_03725226.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2] gi|224802530|gb|EEG20788.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2] Length = 214 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 16/194 (8%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D +KG+ ++ E I A++ Q R G +K R EV G K + QKG Sbjct: 27 DNAEKGMQALKETIVAIRANQ--------------RQGTRSTKTRGEVRGGGKKPWRQKG 72 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR S + GGG FGP P + KV++LA AL ++ + +I+ ID Sbjct: 73 TGRARAGSTRSPLWVGGGVVFGPRPRDFSKKVNAKVKALAFSRALFERASAGEILAIDAW 132 Query: 130 VSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + KTK + R LI+D AARNI ++L +NV D+ + Sbjct: 133 QVAQAKTKAINEIIGRIAPKGRTLIVDAT-FSAEAARAARNIERVSLQEAANLNVVDLAQ 191 Query: 189 CSKLVLSKSAIEAL 202 ++++S A+E + Sbjct: 192 YKQIIVSTQALEKI 205 >gi|33594752|ref|NP_882395.1| 50S ribosomal protein L4 [Bordetella parapertussis 12822] gi|33599023|ref|NP_886583.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50] gi|46576756|sp|Q7W2F5|RL4_BORPA RecName: Full=50S ribosomal protein L4 gi|46576763|sp|Q7WRC4|RL4_BORBR RecName: Full=50S ribosomal protein L4 gi|33564828|emb|CAE39771.1| 50S ribosomal protein L4 [Bordetella parapertussis] gi|33575069|emb|CAE30532.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50] Length = 205 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQ-AATFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEE 202 >gi|27904941|ref|NP_778067.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397671|sp|Q89A69|RL4_BUCBP RecName: Full=50S ribosomal protein L4 gi|27904339|gb|AAO27172.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 202 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 4/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +R+ ++ V++VS+ F + ++ +V+ S R G K RSEV+ +G Sbjct: 1 MELVLRD---DEHSVLNVSDITFGRDFNEALVHQVIISYSSSIRQGTHAQKNRSEVSGSG 57 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 58 KKPWRQKGTGRARVGSLRSPLWRSGGVTFAAKPKSFYQKINKKMYRGALKSIFSELIRQK 117 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V + KT+ L+ + R + L + LII + D N +LA+RN+ +++ V + Sbjct: 118 RLVVFREFTIEFPKTRLLIDKLRDIKLHDVLIITKTK-DNNLKLASRNLYKVDVQTVNHM 176 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N ++ + ++++ AI+ +E+ Sbjct: 177 NPRSLISFNHVLITSKAIQKVEE 199 >gi|91786168|ref|YP_547120.1| 50S ribosomal protein L4 [Polaromonas sp. JS666] gi|123356254|sp|Q12GX0|RL4_POLSJ RecName: Full=50S ribosomal protein L4 gi|91695393|gb|ABE42222.1| LSU ribosomal protein L4P [Polaromonas sp. JS666] Length = 206 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G + V + +F + + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNDQGLASSKVDVPDTVFGREYNESLIHQVVVAFQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L++ L+I +D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLAVDSPKTKVLADKFKAMNLNSVLVIADV-VDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKAAMDQLKEMF 205 >gi|294142932|ref|YP_003558910.1| 50S ribosomal protein L4 [Shewanella violacea DSS12] gi|293329401|dbj|BAJ04132.1| ribosomal protein L4 [Shewanella violacea DSS12] Length = 201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +RGGG F + KK+ AL+ S+ + ++V+++ + Sbjct: 69 RAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFTVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + ++L + LI+ ++D N LAARN+ +++ V GI+ ++ +K++ Sbjct: 129 PKTKELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 VTADAVKQIEE 198 >gi|126697086|ref|YP_001091972.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301] gi|166199841|sp|A3PF46|RL4_PROM0 RecName: Full=50S ribosomal protein L4 gi|126544129|gb|ABO18371.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301] Length = 210 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINL 175 DI +++ S K+ KT ++ L + L+I D + + NI + L Sbjct: 120 -DIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD-IIKKSINNIEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 178 IAADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|149928570|ref|ZP_01916794.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105] gi|149822711|gb|EDM81974.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105] Length = 206 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ + VS+ +F + + ++ +++ R G + K RSEV + Sbjct: 1 MELKVISDSGQASQTVQVSDVVFGREYNEPLIHQLVVAYQANARQGTRQQKDRSEVRAST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR + S +RGGGK F P L KK+ + LS Sbjct: 61 RKPWKQKGTGRARAGAVSSPLWRGGGKTFPNSPDENFTQKLNKKMFRAGVCSILSQLSRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK L + + + L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLVVVESLDLEAPKTKLLDQKLKGMGLDSVLMIVDS-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V +++AI+ L++ + Sbjct: 180 ADPLSLIYFKKVVATRAAIDKLQEMY 205 >gi|255311345|ref|ZP_05353915.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276] gi|255317646|ref|ZP_05358892.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276s] Length = 222 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDTFFTEGKEQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVSKEC----KTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + I+ YDI +V+S+ A+E L Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELL 212 >gi|86610029|ref|YP_478791.1| 50S ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|109893646|sp|Q2JIM6|RL4_SYNJB RecName: Full=50S ribosomal protein L4 gi|86558571|gb|ABD03528.1| ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 316 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V+N GE G +S + + IL LR Q R G + +K R+EV G K + Sbjct: 6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPW 65 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +R GG FGP A+ +K R LALR AL + D++V Sbjct: 66 KQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRV--EDLIV 123 Query: 126 IDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ + KT+ + R+ ++ +AL+I + + A RNI + L+ + Sbjct: 124 VEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLI-VAERSEAVERAVRNIARVKLIGLDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+D+L ++++ SA+E L+ R+ Sbjct: 183 INVFDLLNVDWVLITVSALEQLKARW 208 >gi|296272641|ref|YP_003655272.1| 50S ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299] gi|296096815|gb|ADG92765.1| ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299] Length = 195 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 1/161 (0%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R ++ K RSEV G K QKG+G AR SK F GGG+ FGP + K Sbjct: 35 QRANTARVKNRSEVRGGGKKPKAQKGSGGARWGSKRSPLFVGGGQVFGPSARNYNQKINK 94 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LALR A++ + V+D++ + KTK V L+ + LII +D Sbjct: 95 KQKVLALRFAINTHVEKESLFVVDSVTLESGKTKDAVAVINGLNQRDTLIIVDT-IDEKT 153 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 LA RNI N ++ Q +N Y +++ KS +EAL++ Sbjct: 154 YLAYRNIKNCYMIEKQEVNAYIAAAYHSILVEKSVLEALKE 194 >gi|297748657|gb|ADI51203.1| LSU ribosomal protein L1E ( L4P) [Chlamydia trachomatis D-EC] gi|297749537|gb|ADI52215.1| LSU ribosomal protein L1E (L4P) [Chlamydia trachomatis D-LC] Length = 231 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 10 MVLLSKFDFSGKESGKFELPDAFFTEGKEQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 68 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 69 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 128 Query: 120 SNDIMVIDNLVSKEC----KTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 129 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 188 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + I+ YDI +V+S+ A+E L Sbjct: 189 SAVRGFTYGENISGYDIAAARNIVVSEKALELL 221 >gi|237653995|ref|YP_002890309.1| 50S ribosomal protein L4 [Thauera sp. MZ1T] gi|237625242|gb|ACR01932.1| ribosomal protein L4/L1e [Thauera sp. MZ1T] Length = 206 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + S+ +F + ++ +V+ R G K KGRSE+A + Sbjct: 1 MELKLLNDQGQAASTLEASDVLFGRDYNEALVHQVVTAYLANARSGNRKQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGGK F P + +K+ + LS Sbjct: 61 RKPFRQKGTGNARAGMASSPLWRGGGKIFPSSPDENFSQKVNRKMYRAGVAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V++N + KT+ L + + + L + L+I ++D N L++RN+ + +L V Sbjct: 121 DRLAVVENFSVEAPKTRLLSQKLKGMGLDSVLVITD-EIDENLFLSSRNLHQVLVLEVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++R K++++K A+ +E+ ++ Sbjct: 180 ADPVSLVRFPKVLVTKGALAKMEEAWQ 206 >gi|74316424|ref|YP_314164.1| 50S ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259] gi|109893658|sp|Q3SLP8|RL4_THIDA RecName: Full=50S ribosomal protein L4 gi|74055919|gb|AAZ96359.1| ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259] Length = 205 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V N GE ++ S++ F + ++ +V+ R G + R+EV+ + Sbjct: 1 MDLTVINDRGEQVASVAASDETFGRDYNEALVHQVVTAFQANARSGNRAQQTRAEVSAST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG F P H + +K+ L LS Sbjct: 61 HKPWRQKGTGRARSGRASSPIWRGGGVTFPNKPNENFTHKVNRKMYRAGLAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK L + +++ +II +D N L++RN+PN+ ++ Sbjct: 121 GKLKVVESLGIESPKTKLLAGKLKSMGYGKVMIIADA-IDDNLWLSSRNLPNVYVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + + +++ ++++K+AI+ E+ Sbjct: 180 ADPWSLVKFGNVLITKAAIKQFEE 203 >gi|261415818|ref|YP_003249501.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372274|gb|ACX75019.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326623|gb|ADL25824.1| ribosomal protein L4 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 206 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 3/161 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +++K + EV+ G K + QKGTGRAR + + + G KA GP + KK Sbjct: 44 RQGTAQTKSKGEVSGGGQKPWKQKGTGRARSGQNTSAVWVRGAKAHGPKSHDYFEKVNKK 103 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRN 162 V+ +A AL++K + V + L KTK L++ ++ N L I + D+N Sbjct: 104 VKKIAFYSALANKASEGKVSVFEALSFSAPKTKDLLSVLAKSGIEQRNVLFIV-SEKDQN 162 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 L++ NIP V +N YD++R + +V+S++A+ LE Sbjct: 163 LYLSSNNIPWCRCARVADVNTYDVVRANNVVISQAALAELE 203 >gi|295111421|emb|CBL28171.1| LSU ribosomal protein L4P [Synergistetes bacterium SGP1] Length = 207 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + G+ G + +SE +F + +V+ R G K R +V+ Sbjct: 1 MPTIKVVDFSGQSAGEMELSEVVFGAPIHVAAMHQVVVAHLANCRQGTHAVKTRGDVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GG A GP + KKVR LAL ALS K Sbjct: 61 GKKPWRQKHTGRARQGSTRSPLWVHGGVAHGPKMRDYSQKVNKKVRRLALLSALSVKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ + + TK + A+ AL+I N + RNIP L V Sbjct: 121 AQMLVVRGMEMEAPSTKTMKGFMDAIGAEKALVIYSGN-GENVARSVRNIPGARYLNVAS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L LV++ + LE+ + Sbjct: 180 INVYDLLNSRTLVVTPEVVARLEEVY 205 >gi|203284389|ref|YP_002222129.1| 50S ribosomal protein L4 [Borrelia duttonii Ly] gi|203287923|ref|YP_002222938.1| 50S ribosomal protein L4 [Borrelia recurrentis A1] gi|226730623|sp|B5RM37|RL4_BORDL RecName: Full=50S ribosomal protein L4 gi|226730625|sp|B5RPI3|RL4_BORRA RecName: Full=50S ribosomal protein L4 gi|201083832|gb|ACH93423.1| 50S ribosomal protein L4 [Borrelia duttonii Ly] gi|201085143|gb|ACH94717.1| 50S ribosomal protein L4 [Borrelia recurrentis A1] Length = 209 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 16/214 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I + + +F + G + + + R+G + +K R+EV + Sbjct: 1 MERKVFSKDGQELRTIDLDDGVFNIDVSYGSIYNAINNELANLRVGTASTKTRAEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120 K + QKGTGRAR ++ + GGG A GP P + LPKKV+ LA + LS C+ Sbjct: 61 KKPWKQKGTGRARVGTRRNPVWVGGGIALGPKPRDYSYKLPKKVKRLAFKSVLS--LCAS 118 Query: 121 --NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL------DRNFQLAARNIPN 172 + + V++N KTK L AL + N + +G + D+ + A +NI + Sbjct: 119 VDDRLKVVENFTIDSGKTKEL-----ALIIKNFIKHNGRTVILLGNDDQMIKRAGKNIRD 173 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +L + V D+ L+ +SAI L + + Sbjct: 174 LKILSFNRLRVVDLFYTKNLIALESAINGLNELY 207 >gi|148238769|ref|YP_001224156.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803] gi|166199919|sp|A5GIU4|RL4_SYNPW RecName: Full=50S ribosomal protein L4 gi|147847308|emb|CAK22859.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803] Length = 211 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + RSEV Sbjct: 1 MANCVVRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 +D+ V+ + + + KT+ +V L + S LI+ G + + + RN+ + L Sbjct: 119 DDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSE-VLRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVL + A+ +++ + Sbjct: 178 IAANQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|15605256|ref|NP_220042.1| 50S ribosomal protein L4 [Chlamydia trachomatis D/UW-3/CX] gi|76789264|ref|YP_328350.1| 50S ribosomal protein L4 [Chlamydia trachomatis A/HAR-13] gi|237802956|ref|YP_002888150.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/Jali20/OT] gi|237804878|ref|YP_002889032.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/TZ1A828/OT] gi|7674296|sp|O84532|RL4_CHLTR RecName: Full=50S ribosomal protein L4 gi|109893586|sp|Q3KLH0|RL4_CHLTA RecName: Full=50S ribosomal protein L4 gi|3328964|gb|AAC68128.1| L4 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX] gi|76167794|gb|AAX50802.1| LSU ribosomal protein L1E [Chlamydia trachomatis A/HAR-13] gi|231273178|emb|CAX10091.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/TZ1A828/OT] gi|231274190|emb|CAX10984.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/Jali20/OT] gi|296436060|gb|ADH18234.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9768] gi|296436988|gb|ADH19158.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11222] gi|296437921|gb|ADH20082.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11074] gi|297140421|gb|ADH97179.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9301] Length = 222 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDAFFTEGKEQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVSKEC----KTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + I+ YDI +V+S+ A+E L Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELL 212 >gi|224373648|ref|YP_002608020.1| 50S ribosomal protein L4 [Nautilia profundicola AmH] gi|223588448|gb|ACM92184.1| ribosomal protein L4/L1 family [Nautilia profundicola AmH] Length = 193 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALP 102 +R G + +K R EV+ G K + QKG GRAR S QF GGG A GP L Sbjct: 32 QRAGTAHTKTRGEVSGGGKKPFRQKGLGRARQGSIRAPQFVGGGVAHGPRNERDWSQKLN 91 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KK + +AL++AL++K + + V+D++ + KTK + ++ + LI+ ++ Sbjct: 92 KKQKRVALKYALNEKAENGKLFVVDSIKIESGKTKDATKWLKEINQRDYLIVVDEMDEKT 151 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 F LA RNIPN+ ++ + +N Y ++ K+A E + Sbjct: 152 F-LAFRNIPNVYIITPEELNAYYASVFHSIIFDKAAYEKV 190 >gi|323507973|emb|CBQ67844.1| related to 50S ribosomal protein L4 [Sporisorium reilianum] Length = 442 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 55/248 (22%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K + +S +F ++ ++ + + +R G + +KGRS+V + K+ QKG+G+A Sbjct: 141 KSYVPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGSMRKLRPQKGSGQA 200 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VS 131 R + S RGG A GP P LP++VR LALR ALS K+ D+ V+DN ++ Sbjct: 201 RLGTMSNPMLRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQGDLHVVDNFDWIA 260 Query: 132 KECKTKYLVTRFRALDLSNALI--------------------------------IDGCQL 159 T L + S+AL +D Q Sbjct: 261 PPSSTGPLSRLLSSKGWSDALFLTAPRDPQPSIRSLIKDARPSSSDPIYQEQQRLDHNQA 320 Query: 160 DRNFQLAARNIPNINLLPVQG---------------------INVYDILRCSKLVLSKSA 198 RNF LA+ N+P + L+ + ++ Y++LR K++ A Sbjct: 321 IRNFVLASNNLPRVELIELDALTEEYRQNVARTSDDKKKPGELHAYEVLRRHKVICDLGA 380 Query: 199 IEALEDRF 206 +E LE++ Sbjct: 381 VEWLEEKL 388 >gi|123959698|gb|AAI28968.1| LOC100037111 protein [Xenopus laevis] Length = 169 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKG+GR+R S +RGGG A GP P + +P K+R L L+ AL+ K +D+ + Sbjct: 6 QKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQDDLHI 65 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQ-LDRNFQLAARNIPNINLLPVQGINV 183 ID+L +YL+ ++ LI+D + L N A N+ IN++P G+NV Sbjct: 66 IDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPATGLNV 125 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 + +L+ +VL+ +A++ LE++ Sbjct: 126 FSMLKHDTVVLTVAAVDFLEEKL 148 >gi|257454048|ref|ZP_05619322.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60] gi|257448526|gb|EEV23495.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60] Length = 200 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +S+ F + + ++ +V+ R G K R EV+ G K + Q Sbjct: 2 NLNTVTGSAVELSDVAFGREFNEALVHQVVTAYLAGGRQGSRAQKTRGEVSGGGKKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGG+AF P + +K+ A++ L++ + ++++D Sbjct: 62 KGTGRARAGSIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQDRLVLVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK L+ + + L+ ALI+ ++D N LAARNIP +++L ++ ++ Sbjct: 122 DISISAPKTKELIAKLKDLNAPKALIVTN-EVDENLYLAARNIPYVSVLGSTEVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+++S +A + +E Sbjct: 181 AFDKVIMSVAAAKEIE 196 >gi|269302430|gb|ACZ32530.1| ribosomal protein L4 [Chlamydophila pneumoniae LPCoLN] Length = 224 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 16/220 (7%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ LS + G G + V++ +FA + Q I ++ ++ KR + ++ RSEV+ Sbjct: 1 MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRA-NKRQWSACTRNRSEVS 59 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDK 117 ++ K + QKGTG AR + QFRGGG FGP P H + +K R A+R L+ K Sbjct: 60 HSTKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQK 119 Query: 118 FCSNDIMVIDNLVSKEC----KTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAAR 168 +N + V+D+ V + KT+ + + ++ I +D + + N +L+ R Sbjct: 120 IQTNKLTVVDDTVFVDALTAPKTQSALKFLKDCNVECRSILFIDHLDHVEKNENLRLSLR 179 Query: 169 NIPNINLLPVQGINV--YDILRCSKLVLSKSAIEALEDRF 206 N+ + V GIN+ YD+ +V+SK A++ L +R Sbjct: 180 NLTAVKGF-VYGININGYDLASAHNIVISKKALQELVERL 218 >gi|262377311|ref|ZP_06070535.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145] gi|262307764|gb|EEY88903.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145] Length = 200 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGRKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARNIP+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVTDA-VDENLYLAARNIPHVDVVDAAAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|269991356|emb|CAX12540.1| 50S ribosomal protein L4 [Fucus vesiculosus] Length = 215 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ R Q +R G + + R+EV G K QKG GRAR S ++GGG +FG Sbjct: 39 VIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFG 98 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR--ALDLS 149 P P + + + +K L LR L K N+I+++DNL E KTK ++ + ++LS Sbjct: 99 PKPKLYSNKINRKEWKLGLRSLLISK--QNNIIIVDNLNITEYKTKNIIKILKIFNINLS 156 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++++N + NI I L +N+ IL L+++K +++ +ED + Sbjct: 157 EKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTY 213 >gi|220935491|ref|YP_002514390.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7] gi|254803762|sp|B8GV57|RL4_THISH RecName: Full=50S ribosomal protein L4 gi|219996801|gb|ACL73403.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7] Length = 201 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G KGRS+V+ G+K + QKG+GRAR + +R GGK F P L +K Sbjct: 40 RAGTKAQKGRSDVSGGGAKPWKQKGSGRARAGTIRSPIWRTGGKVFAARPRDYSQKLNRK 99 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + A+R S+ ++V+D+ KTK L+ + L +SNALI+ Q D N Sbjct: 100 MYRAAMRSIFSELVRQERLVVVDSFAVDAPKTKGLLEKLGGLGVSNALIVTD-QADANLY 158 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ARN+P +++ V G++ ++ K++++ A++ +E+ Sbjct: 159 LSARNLPGVDVSEVGGLDPVSLVGFEKVLITVPALKQVEE 198 >gi|312795775|ref|YP_004028697.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI 454] gi|312167550|emb|CBW74553.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI 454] Length = 208 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G++ ++ S+ +F + ++ +++ R G K R +V +T Sbjct: 3 MELKLLNDQGQESAGVNASDIVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ + LS Sbjct: 63 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFGQKVNKKMFRAGVCSILSQLARE 122 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++ KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 123 GRLSVVEDIKLDAPKTKLLAAKFKAMGLESVLVITDT-VDENLYLASRNLPHVAVVEPRY 181 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K+A+ +E+ Sbjct: 182 ADPLSLIYFKKVLVTKAAVAQIEE 205 >gi|212634830|ref|YP_002311355.1| 50S ribosomal protein L4 [Shewanella piezotolerans WP3] gi|226730724|sp|B8CND4|RL4_SHEPW RecName: Full=50S ribosomal protein L4 gi|212556314|gb|ACJ28768.1| Ribosomal protein L4/L1e [Shewanella piezotolerans WP3] Length = 201 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F + KK+ AL+ S+ + ++V+++ + KT Sbjct: 72 TVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQDRLVVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + L + LI+ ++D N LAARN+ +++ V GI+ ++ +K++++ Sbjct: 132 KELKAKLNEMQLEDVLIVT-PEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVLVTA 190 Query: 197 SAIEALED 204 AI+ +E+ Sbjct: 191 EAIKQIEE 198 >gi|15618556|ref|NP_224842.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae CWL029] gi|15836178|ref|NP_300702.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae J138] gi|16752394|ref|NP_444653.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae AR39] gi|33242003|ref|NP_876944.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae TW-183] gi|7674302|sp|Q9Z7Q8|RL4_CHLPN RecName: Full=50S ribosomal protein L4 gi|4376944|gb|AAD18785.1| L4 Ribosomal Protein [Chlamydophila pneumoniae CWL029] gi|7189036|gb|AAF37985.1| ribosomal protein L4 [Chlamydophila pneumoniae AR39] gi|8979018|dbj|BAA98853.1| L4 ribosomal protein [Chlamydophila pneumoniae J138] gi|33236513|gb|AAP98601.1| ribosomal protein L4 [Chlamydophila pneumoniae TW-183] Length = 224 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 16/220 (7%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ LS + G G + V++ +FA + Q I ++ ++ KR + ++ RSEV+ Sbjct: 1 MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRA-NKRQWSACTRNRSEVS 59 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDK 117 ++ K + QKGTG AR + QFRGGG FGP P H + +K R A+R L+ K Sbjct: 60 HSTKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQK 119 Query: 118 FCSNDIMVIDNLVSKEC----KTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAAR 168 +N + V+D+ V + KT+ + + ++ I +D + + N +L+ R Sbjct: 120 IQTNKLTVVDDTVFVDALTAPKTQSALRFLKDCNVECRSILFIDHLDHVEKNENLRLSLR 179 Query: 169 NIPNINLLPVQGINV--YDILRCSKLVLSKSAIEALEDRF 206 N+ + V GIN+ YD+ +V+SK A++ L +R Sbjct: 180 NLTAVKGF-VYGININGYDLASAHNIVISKKALQELVERL 218 >gi|157960015|ref|YP_001500049.1| 50S ribosomal protein L4 [Shewanella pealeana ATCC 700345] gi|189042885|sp|A8GYX7|RL4_SHEPA RecName: Full=50S ribosomal protein L4 gi|157845015|gb|ABV85514.1| ribosomal protein L4/L1e [Shewanella pealeana ATCC 700345] Length = 201 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F + KK+ AL+ S+ + ++V+++ + KT Sbjct: 72 TVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + L + LI+ ++D N LAARN+ +++ V GI+ ++ +K++++ Sbjct: 132 KELKAKLNEMQLEDVLIVT-PEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVLVTA 190 Query: 197 SAIEALED 204 AI+ +E+ Sbjct: 191 EAIKQIEE 198 >gi|50086214|ref|YP_047724.1| 50S ribosomal protein L4 [Acinetobacter sp. ADP1] gi|81613021|sp|Q6F7R3|RL4_ACIAD RecName: Full=50S ribosomal protein L4 gi|49532190|emb|CAG69902.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter sp. ADP1] Length = 205 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R+EV+ G K + Q Sbjct: 7 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQ 66 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 67 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 126 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 127 EFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 185 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 186 AFDKVVMSVAAAKKIE 201 >gi|170729008|ref|YP_001763034.1| 50S ribosomal protein L4 [Shewanella woodyi ATCC 51908] gi|226730725|sp|B1KMY2|RL4_SHEWM RecName: Full=50S ribosomal protein L4 gi|169814355|gb|ACA88939.1| ribosomal protein L4/L1e [Shewanella woodyi ATCC 51908] Length = 201 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F + KK+ AL+ S+ + ++V+++ + KT Sbjct: 72 TVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFGVEAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + ++L + LI+ ++D N LAARN+ +++ V GI+ ++ +K++++ Sbjct: 132 KELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVLVTA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKQIEE 198 >gi|262370577|ref|ZP_06063902.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046] gi|262314377|gb|EEY95419.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046] Length = 200 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARNIP+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVTES-VDENLYLAARNIPHVDVVDAAAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|254525728|ref|ZP_05137780.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT 9202] gi|221537152|gb|EEE39605.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT 9202] Length = 210 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +++ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D+ +++ S K+ KT +V L + L+I D + + NI + L Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIVNGLARLGIQKNEKVLVILDSPSDV-IKKSINNIEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 178 IAADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|33594480|ref|NP_882124.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I] gi|46577211|sp|Q7VTD2|RL4_BORPE RecName: Full=50S ribosomal protein L4 gi|33564556|emb|CAE43872.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I] Length = 205 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQ-AATFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + KTK + ++L L + LII +D N LA RN+P + ++ + Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPYVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEE 202 >gi|262341014|ref|YP_003283869.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272351|gb|ACY40259.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 209 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 6/207 (2%) Query: 2 IELSVRNLDGE--DKGVISVSEDIFALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 +EL + ++ G DK V E+IF + + + R+ S +R G KSK R E++ Sbjct: 1 MELRILDIKGNFTDKKV-EFDENIFFKRSYDHSVYLEIKRFLSS-QRQGTHKSKERGELS 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 + K++ QKGTG +R FRGGG+ FGP P + L K+ +S + + K Sbjct: 59 GSTRKLHRQKGTGGSRKGDIKNPIFRGGGRVFGPRPRKYLTKLNKRTKSSVRKFIIEQKL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLP 177 N I +I+++ KTK+ + ++ L N L++ + ++N L++RN+ LL Sbjct: 119 IQNQIKIIEDIEFNIPKTKFFLGILNSIKLKNKKLLMVLGEENKNLYLSSRNLKCFKLLN 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 V ++ + +L +V ++++I+ + + Sbjct: 179 VNELDCFSLLNFPSIVFTENSIKKIHE 205 >gi|157377448|ref|YP_001476048.1| 50S ribosomal protein L4 [Shewanella sediminis HAW-EB3] gi|189042886|sp|A8G1E7|RL4_SHESH RecName: Full=50S ribosomal protein L4 gi|157319822|gb|ABV38920.1| ribosomal protein L4/L1e [Shewanella sediminis HAW-EB3] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 + + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRA Sbjct: 9 QSALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSGKKPWRQKGTGRA 68 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + +RGGG F + KK+ AL+ S+ + ++V+++ + Sbjct: 69 RAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFSVEA 128 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK L + ++L + LI+ ++D N LAARN+ +++ V GI+ ++ +K++ Sbjct: 129 PKTKELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGIDPVSLIAFNKVL 187 Query: 194 LSKSAIEALED 204 ++ A++ +E+ Sbjct: 188 VTADAVKQIEE 198 >gi|123969296|ref|YP_001010154.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601] gi|166199844|sp|A2BTD6|RL4_PROMS RecName: Full=50S ribosomal protein L4 gi|123199406|gb|ABM71047.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601] Length = 210 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINL 175 D+ +++ S K+ KT ++ L + L+I D + + NI + L Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD-IIKKSINNIEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 178 IAADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|87300912|ref|ZP_01083754.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701] gi|87284783|gb|EAQ76735.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701] Length = 211 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VR+ G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MVNCVVRDWQGKEAGEASLDLKVAKKSSAADLVHRAVVRQLANARQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYTLAMNRKERRLALRTALISR--A 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 DI+V+ + + KTK +V D+ S L++ D + + RN+ + L Sbjct: 119 ADILVVKGFAADLEVPKTKEIVAALDRWDVPAGSKVLLVLDAPGD-VVRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVLS+ A+ +++ + Sbjct: 178 IAADQLNVFDLLHANVLVLSEEALAKIQEIY 208 >gi|168046642|ref|XP_001775782.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672934|gb|EDQ59465.1| predicted protein [Physcomitrella patens subsp. patens] Length = 230 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 12/206 (5%) Query: 8 NLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 +GE G + + D+ +P+ + ++ R + + +R G + + RSEV G K Y Sbjct: 12 TFEGEAAGEVEM--DLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRGGGRKPY 69 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S GGG FGP P + KK + LA+ AL + +V Sbjct: 70 KQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAISTALQS--AGANTVV 127 Query: 126 IDNLVSK--ECKTKYLVT---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ K KTK ++ R+ N+L+ + L++RN+ L+ + Sbjct: 128 VEDFEEKFSTPKTKDFMSALKRWGVKQGENSLLFS-MNPSESLVLSSRNVNTFKLISPRN 186 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+LR KL+L++S+++ LE ++ Sbjct: 187 LNLYDVLRADKLILTESSVKYLEQQY 212 >gi|167626038|ref|YP_001676332.1| 50S ribosomal protein L4 [Shewanella halifaxensis HAW-EB4] gi|189042884|sp|B0TM11|RL4_SHEHH RecName: Full=50S ribosomal protein L4 gi|167356060|gb|ABZ78673.1| ribosomal protein L4/L1e [Shewanella halifaxensis HAW-EB4] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 12 LEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +RGGG F + KK+ AL+ S+ + ++V+++ KT Sbjct: 72 TVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQDRLIVVESFGVDAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + A+ L + LI+ ++D N LAARN+ +++ V G++ ++ K++++ Sbjct: 132 KELKAKLDAMQLQDVLIVT-PEVDENLFLAARNLYKVDVRDVAGVDPVSLIAFDKVLVTA 190 Query: 197 SAIEALED 204 AI+ +E+ Sbjct: 191 EAIKQIEE 198 >gi|148244330|ref|YP_001219024.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA] gi|166199923|sp|A5CXK5|RL4_VESOH RecName: Full=50S ribosomal protein L4 gi|146326157|dbj|BAF61300.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA] Length = 204 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ + V + IFA Q ++ +V R G K RS V+ G Sbjct: 1 MELKVLNISLNSLNTVEVDDTIFARDFNQALVHQVTTAYMSGSRQGSKAQKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KRPWAQKGTGRARAGTTRGPIWRSGGVTFATQPRSYAQKVNKKMYKGAISIIFSELVRSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ KE KTK ++ + L++ +AL++ +LD N L++RN+ ++ + Q I Sbjct: 121 RLKVVKEFDIKEVKTKNMIALLKVLNVKDALLMTD-ELDENLYLSSRNLYHVGVCDTQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 + ++ +V+++ A++ +E Sbjct: 180 DPVSLIGYDNVVVTELALKKIE 201 >gi|2792020|emb|CAA63651.1| ribosomal protein L4 [Spinacia oleracea] Length = 293 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +I L + N GE G ++ + + ++ R L KR G + + R+EV Sbjct: 52 LIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGG 111 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TGRAR S+ GGG FGP P + KK R LAL A++ Sbjct: 112 GRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIAS--AV 169 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + V++ ++ KTK + + LD + + L N + + RNI + LL Sbjct: 170 GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLL 229 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++D+L KLV ++ I+ L R+ Sbjct: 230 TPRSLNLFDVLNAEKLVFTEGTIQYLNQRY 259 >gi|3914665|sp|O49937|RK4_SPIOL RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor gi|189096129|pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|2792007|emb|CAA75149.1| chloroplast ribosomal protein L4 [Spinacia oleracea] Length = 293 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +I L + N GE G ++ + + ++ R L KR G + + R+EV Sbjct: 52 LIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGG 111 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TGRAR S+ GGG FGP P + KK R LAL A++ Sbjct: 112 GRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIAS--AV 169 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + V++ ++ KTK + + LD + + L N + + RNI + LL Sbjct: 170 GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLL 229 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++D+L KLV ++ I+ L R+ Sbjct: 230 TPRSLNLFDVLNAEKLVFTEGTIQYLNQRY 259 >gi|325973272|ref|YP_004250336.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois] gi|325989707|ref|YP_004249406.1| 50S ribosomal protein L4 [Mycoplasma suis KI3806] gi|323574792|emb|CBZ40452.1| 50S ribosomal protein L4 [Mycoplasma suis] gi|323651874|gb|ADX97956.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 11/214 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKP----QQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 E+ + LDGE + I S+ I K I + Q KR+ +K + EV+ Sbjct: 6 EIKIYTLDGEVESSIKFSDFIPDWKSDFYYSDAIFQTTVSEQQ-SKRLARPHTKTKGEVS 64 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDK 117 G K Y QK TGRAR S+ QF GGG AFGP + + + K++R+LA+R + + Sbjct: 65 GGGKKPYRQKHTGRARQGSRRNPQFVGGGVAFGPRKEVNHYKKVNKRIRALAIRSSWTLA 124 Query: 118 FCSNDIMVI-----DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 N + I +N + K Y + + L + L ARN+PN Sbjct: 125 LNENRVFGISSKKLENFPANRTKIFYSFLGKLGFQGEKRVYLIVKSLSEDIVLGARNLPN 184 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++ V I ++ +L +++LS E L+ + Sbjct: 185 LKVVKVNSITIFSLLNARRIILSNEGFEWLKTNY 218 >gi|198430347|ref|XP_002122114.1| PREDICTED: similar to mitochondrial ribosomal protein L4 [Ciona intestinalis] Length = 330 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 3/194 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 V+ + +F P+ IL V+RWQ + + S S+ R+E+ K + QKGTGRAR Sbjct: 93 SVVQLHPVLFDTHPRMDILHSVVRWQQEYREVDYSWSRTRAEIGRGKKKPWPQKGTGRAR 152 Query: 75 HSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSK 132 H S + + GG + GP P + L L ALS K ND+++I++ +S+ Sbjct: 153 HGSSNSPLWVKGGISQGPRGPRASFYELNPNTLLDGLLIALSIKHIQNDLIIIESAQISQ 212 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNF-QLAARNIPNINLLPVQGINVYDILRCSK 191 + R L ++ L++ + ++ + A + +N++P+ G+NV IL+ K Sbjct: 213 DMPDFDEYLENRNLSEASMLLVHAENENISYLEHLAEDSKLLNIMPLYGLNVCSILKHDK 272 Query: 192 LVLSKSAIEALEDR 205 LVLS+ ++ LE + Sbjct: 273 LVLSRCILDELEHK 286 >gi|189218696|ref|YP_001939337.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4] gi|226730687|sp|B3E0I5|RL4_METI4 RecName: Full=50S ribosomal protein L4 gi|189185554|gb|ACD82739.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4] Length = 222 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 86/163 (52%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K ++ V +G K + QKGTGRAR S + GGG FGP P +PKK Sbjct: 45 RSGTRATKTKATVKASGKKPWRQKGTGRARAGYVSSPVWVGGGVVFGPQPRDFSKNIPKK 104 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 ++ LAL A + K S ++ ++ + E KTK +++ D + ++ RN Sbjct: 105 IKGLALLKAFAAKVRSEEVYCLEKVEMTEIKTKKMLSLLEGWDGKESGLLILKNPSRNVL 164 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ RNIP++ ++ Q +N D+L K+ L + AIE L +R K Sbjct: 165 LSGRNIPHLGIVRAQDVNALDLLGFKKVFLERPAIEVLVERVK 207 >gi|78484641|ref|YP_390566.1| ribosomal protein L4/L1e [Thiomicrospira crunogena XCL-2] gi|109893657|sp|Q31IY1|RL4_THICR RecName: Full=50S ribosomal protein L4 gi|78362927|gb|ABB40892.1| LSU ribosomal protein L4P [Thiomicrospira crunogena XCL-2] Length = 206 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +IEL+ G++ G + VSE IF + + ++ +V+ R G K RS V Sbjct: 5 LIELA----SGKEAGSVKVSEAIFGAEFNEALVHQVVNAYLAGARSGTKGQKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKG+GRAR + + GGG+AF + KK+ A++ S+ + Sbjct: 61 GAKPWAQKGSGRARAGTSRGPIWIGGGRAFPGHNRDFSQKVNKKMYRGAMKAIFSELART 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ + KTK V + L+L +AL+I D L+ARN+ + ++ V Sbjct: 121 ERLVVVDDFKVEAPKTKDFVAKLNTLNLKDALVITEG-FDEYLYLSARNLYHADVCDVAS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ +V+++ AI+ LE++ Sbjct: 180 IDPVSLVGFKSIVVTQGAIKQLEEKL 205 >gi|255319814|ref|ZP_05361019.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82] gi|262380347|ref|ZP_06073501.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164] gi|255303133|gb|EET82345.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82] gi|262297793|gb|EEY85708.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164] Length = 200 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L KTK L+ + L+ ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 ELQVSAPKTKELLAKLNDLNAPRALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|311109611|ref|YP_003982464.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8] gi|310764300|gb|ADP19749.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8] Length = 206 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARSGNRAQKDRTEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 121 DRIAVVESFDLASPKTKDAAAKLKSLGLDSVLIITDS-VDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEE 203 >gi|113952777|ref|YP_729666.1| 50S ribosomal protein L4 [Synechococcus sp. CC9311] gi|122945812|sp|Q0ID06|RL4_SYNS3 RecName: Full=50S ribosomal protein L4 gi|113880128|gb|ABI45086.1| ribosomal protein L4 [Synechococcus sp. CC9311] Length = 211 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 VR+ G++ G S+ + ++ R + Q R G + + RSEV G K Y Sbjct: 6 VRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPY 65 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S GGG FGP P A+ +K R ALR AL + D++V Sbjct: 66 KQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI--EDLVV 123 Query: 126 IDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + + + KTK ++ LD+S + ++I + + RN+ + L+ + Sbjct: 124 VKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLIAADQL 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+D+L +KLV+ + A+ +++ + Sbjct: 184 NVFDLLHANKLVVGEDALAKIQEVY 208 >gi|78780034|ref|YP_398146.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9312] gi|109893618|sp|Q318I5|RL4_PROM9 RecName: Full=50S ribosomal protein L4 gi|78713533|gb|ABB50710.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. MIT 9312] Length = 210 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + DG+ G + + + ++ R + Q KR G + + RSEV Sbjct: 1 MTTIETLKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRIS- 119 Query: 121 NDIMVIDNLVS--KECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN- 174 D+ +++ S K+ KT ++ TR L+I LD ++ ++I NI Sbjct: 120 -DVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVI----LDSPSEVIKKSINNIEK 174 Query: 175 --LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+DIL +KLV+ +SAI +++ + Sbjct: 175 VKLIAADQLNVFDILNANKLVIGQSAINKIKEVY 208 >gi|123966972|ref|YP_001012053.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515] gi|166199843|sp|A2BYT5|RL4_PROM5 RecName: Full=50S ribosomal protein L4 gi|123201338|gb|ABM72946.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515] Length = 210 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q +R G + + RSEV Sbjct: 1 MTTLETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRV-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNI-- 173 +DI +++ S + KT ++ L + L+I LD ++ ++I NI Sbjct: 119 DDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVI----LDSPSEVIKKSINNIAK 174 Query: 174 -NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+DIL +KLV+ +SAI +++ + Sbjct: 175 VKLIAADQLNVFDILNANKLVIGQSAINKIQEVY 208 >gi|33241160|ref|NP_876102.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577200|sp|Q7V9W3|RL4_PROMA RecName: Full=50S ribosomal protein L4 gi|33238690|gb|AAQ00755.1| Ribosomal protein L4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 211 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S++ + ++ R + Q R G + + R+EV Sbjct: 1 MANCAVLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P ++ +K R LALR AL +F Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRLALRTALMARF-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 ND++ + + S K KTK + LD+S + ++I Q + + RN+ + L+ Sbjct: 119 NDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + L++ + A+ +++ + Sbjct: 179 AAEHLNVFDLLNANSLIIGEDALGKIKEVY 208 >gi|255348904|ref|ZP_05380911.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70] gi|255503444|ref|ZP_05381834.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70s] gi|255507123|ref|ZP_05382762.1| 50S ribosomal protein L4 [Chlamydia trachomatis D(s)2923] gi|289525572|emb|CBJ15050.1| LSU ribosomal protein L1E [Chlamydia trachomatis Sweden2] gi|296435132|gb|ADH17310.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/150] gi|296438852|gb|ADH21005.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/11023] Length = 222 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDAFFTEGKEQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A++ L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIQLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFISSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + I+ YDI +V+S+ A+E L Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELL 212 >gi|256371216|ref|YP_003109040.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331] gi|256007800|gb|ACU53367.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331] Length = 214 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 2/187 (1%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 ++FA P +L +V+ + R G +K R+EVA G+K Y QKGTG AR S Sbjct: 22 EVFAHAPNIALLHQVVVAEQAGARRGTHSTKTRAEVAGGGAKPYRQKGTGNARQGSIRAP 81 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 Q++GGG GP P P+K+ AL ALSD+ + I V+++ V TK + Sbjct: 82 QYKGGGIVHGPKPRDYSQRTPRKMLRAALAQALSDRASAGVIYVLEDDVITAPSTKAALA 141 Query: 142 RFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 R L + L + D + RN+P + + + V +L ++ +++A+ Sbjct: 142 CLRGAGLEDRKVLALVAGATDEAVFKSVRNLPTVRVHRAGLVLVSAVLASDAVLFTRAAL 201 Query: 200 EALEDRF 206 L R Sbjct: 202 AELLGRV 208 >gi|226953872|ref|ZP_03824336.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244] gi|294651633|ref|ZP_06728937.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194] gi|226835355|gb|EEH67738.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244] gi|292822482|gb|EFF81381.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194] Length = 200 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALII +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLTDLNATRALIITDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|254430668|ref|ZP_05044371.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001] gi|197625121|gb|EDY37680.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001] Length = 211 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 10/212 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +R+ G++ G + + ++ R + Q R G + + R+EVA Sbjct: 1 MAHCVIRDWQGKEAGKADLDLKVAKESSATDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRSYALAMNRKERRLALRTALMSRV-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNIN 174 DI V+ + KTK + L + +I+D + + RN+ + Sbjct: 119 EDITVVKGFGAGLDTPKTKEITAALTRLGIEAGAKVLVILDNA--SEAVRKSVRNLEKVK 176 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+D+L +KLV+S+ A+ +++ + Sbjct: 177 LIAADQLNVFDLLHANKLVVSEEALAKIQEVY 208 >gi|88807885|ref|ZP_01123396.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805] gi|88787924|gb|EAR19080.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805] Length = 211 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + RSEV Sbjct: 1 MANCVVRDWQGKEAGKASLDLKVAKETTALDLMHRAVLRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 +D+ V+ + + + KT+ + L + S LI+ G + + + RN+ + L Sbjct: 119 DDVTVVKDFGASLEAPKTREITDALGRLGIEADSKVLIVVGNPSE-VLRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVL + A+ +++ + Sbjct: 178 IAANQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|159904218|ref|YP_001551562.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211] gi|226730707|sp|A9BCP6|RL4_PROM4 RecName: Full=50S ribosomal protein L4 gi|159889394|gb|ABX09608.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211] Length = 211 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ R + Q R G + + RSEV G K Y QKGTGRAR S GGG FG Sbjct: 32 LIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFG 91 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLV---TRFRAL 146 P P + +K R LALR AL + ND+M++ + + K KT+ +V +RF Sbjct: 92 PKPRSFSLGMNRKERRLALRTALMARI--NDLMIVQDFGTALKVPKTREIVEALSRFGIA 149 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 D + LII Q + RNI + ++ +NV+D+L + LV+ + A+ +++ + Sbjct: 150 DDAKVLIIL-AQPSEIIIRSVRNIERVKVIGADQLNVFDLLNANSLVIGEKALSTIKEVY 208 >gi|315125091|ref|YP_004067095.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|216408818|gb|ACJ73092.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408926|gb|ACJ73146.1| ribosomal protein L4 [Campylobacter coli] gi|315018813|gb|ADT66906.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 204 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK T + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|321251817|ref|XP_003192188.1| ribosomal protein L4 [Cryptococcus gattii WM276] gi|317458656|gb|ADV20401.1| Ribosomal protein L4, putative [Cryptococcus gattii WM276] Length = 407 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 4/195 (2%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 L + VI++ D+FA ++ IL R + W + R G +K RS VAY+G K+ Q Sbjct: 117 TLPSDSNVVIALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQ 176 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTG+AR S RGG P ALP+KVR L++R ALS K + + V+ Sbjct: 177 KGTGKARAGDASSGTRRGGAPIHPIFPKNWAQALPRKVRDLSMRIALSSKLQAGLLRVVP 236 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 NL E K RA L++ L + Q ++ + V+ + + L Sbjct: 237 NL--NEAGWKGTNEARRA--LADGLAFPEAEASEKVQATKSDVEPLAKDAVEAVEKVNEL 292 Query: 188 RCSKLVLSKSAIEAL 202 + ++ SAIE + Sbjct: 293 EGTIPEVTPSAIEPV 307 >gi|15829058|ref|NP_326418.1| 50S ribosomal protein L4 [Mycoplasma pulmonis UAB CTIP] gi|46577287|sp|Q98PY2|RL4_MYCPU RecName: Full=50S ribosomal protein L4 gi|14090002|emb|CAC13760.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma pulmonis] Length = 292 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 3/175 (1%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 Q I +L ++ R R G K K R+EV+ TG K + QKGTG+AR S F GGG+A Sbjct: 116 QAIFDCILSERASR-RQGTHKVKNRAEVSGTGKKPWKQKGTGKARAGSLRNPIFVGGGRA 174 Query: 90 FGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148 FGP ++ KKVR AL +L SN +++ + K TK LV R ++ Sbjct: 175 FGPSVNRNYKISINKKVRLNALMASLFALAKSNSVLLKTFSLEKPS-TKDLVEELRKINA 233 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 SN I D+N L+ARN+ N+ + V + + D++ L+LS I+ LE Sbjct: 234 SNLKRILLVSDDKNIFLSARNLKNVKVTKVTSLMIEDLVAADLLILSNENIKYLE 288 >gi|108804973|ref|YP_644910.1| 50S ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941] gi|122381570|sp|Q1AU30|RL4_RUBXD RecName: Full=50S ribosomal protein L4 gi|108766216|gb|ABG05098.1| LSU ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941] Length = 211 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 14/183 (7%) Query: 24 FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQF 83 F +P+Q ++ R + + +R + ++ RSEVA +G+K+Y QKGTGRAR Sbjct: 24 FETEPKQHVIHRAVVAELEARRRWTASTRERSEVAGSGAKLYRQKGTGRARAGDIKSPLR 83 Query: 84 RGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 GGG GP P + + +K A ALS K + V+D L + TK Sbjct: 84 HGGGTWGGPKPKGPRYGKKINRKEARAAFDGALSAKAAEGRLYVLDALDFERPSTK---- 139 Query: 142 RFRALDLSNALIIDGCQL------DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 RA +L + ++G L +R L+ RN+P + ++ +G VY++LR ++V S Sbjct: 140 --RAKELLGQMGVEGPVLLVLDGEEREAALSFRNLPEVTVVGPRGYGVYELLRAREVVFS 197 Query: 196 KSA 198 ++A Sbjct: 198 RAA 200 >gi|254516912|ref|ZP_05128970.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3] gi|219674417|gb|EED30785.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3] Length = 188 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G K RS+V G K + QKGTGRAR + +R GG F P + +K Sbjct: 27 RQGTRAQKTRSDVRGGGKKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRK 86 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + AL+ +S+ + ++V++NL KTK LV++ +++AL+I G +++ N Sbjct: 87 MYRAALKTIISELARQDRLVVVENLDLDAPKTKLLVSQLDGYGVNSALLISG-EVNENLY 145 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 LA+RN+ +++ VQGI+ +L K++++ A++ +E+ Sbjct: 146 LASRNLQKVDVRDVQGIDPVSLLSHDKVMVTVDAVKKIEE 185 >gi|115387319|ref|XP_001211165.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195249|gb|EAU36949.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 245 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R + ++ R G + +K R++V + K+Y QKGTGRAR K +GGG AFG Sbjct: 51 LLHRAVVYEGDMTRQGTASTKWRADVHGSNRKLYPQKGTGRARVGDKKSPIRKGGGVAFG 110 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALDL-- 148 P P LP+K+ A R ALS ++ +++IDN +S E T +L+ ++ Sbjct: 111 PHPRDFSTELPRKIYDQAWRTALSYRYKRGQLIIIDNEISIPEDATPHLIQDIFKINCWG 170 Query: 149 ----SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + LI D QLD R + + +L ++V D+L +L++ K+A++ + Sbjct: 171 REYGRSTLITD--QLDEGLFETVRQVGEHAKILDRGDVDVKDLLETGRLIIEKAALDRM 227 >gi|32491293|ref|NP_871547.1| 50S ribosomal protein L4 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|46577256|sp|Q8D211|RL4_WIGBR RecName: Full=50S ribosomal protein L4 gi|25166500|dbj|BAC24690.1| rplD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 201 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 3/183 (1%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 +D ++K + +SE IF K + ++ +V+R KR G S K RSEV +G K + QK Sbjct: 6 IDSKEK--VKISEKIFGQKFNESLVHQVVRSYRITKRQGTSAQKSRSEVIGSGKKPWRQK 63 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTGRAR S +R GG F H + KK+ AL+ S+ N I+++ N Sbjct: 64 GTGRARAGSVKSPIWRSGGVTFAKKTRDFKHKINKKMYKNALKSIFSELCRQNRILIVKN 123 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 K KTK L + ++L N LII +D+N L++RN+ +++ IN +++ Sbjct: 124 FFVKSEKTKLLKKKLNEMNLENVLIISKT-IDKNLVLSSRNLNKVHVCFPININPINLIS 182 Query: 189 CSK 191 K Sbjct: 183 FKK 185 >gi|262373520|ref|ZP_06066798.1| ribosomal protein L4/L1 [Acinetobacter junii SH205] gi|262311273|gb|EEY92359.1| ribosomal protein L4/L1 [Acinetobacter junii SH205] Length = 200 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|216408896|gb|ACJ73131.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408898|gb|ACJ73132.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408900|gb|ACJ73133.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK T + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|293977932|ref|YP_003543362.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri DMIN] gi|292667863|gb|ADE35498.1| Ribosomal protein L4 [Candidatus Sulcia muelleri DMIN] Length = 205 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VI++ KTK + L+ + +LII +++ NF ++RN+ N L + Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNIKKSLIIYN-KINDNFFFSSRNLKFTNFLSIN 179 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y++ LV +SAI+ + Sbjct: 180 ELNSYELANSDYLVFFESAIKKI 202 >gi|260549839|ref|ZP_05824055.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624] gi|293610825|ref|ZP_06693125.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024] gi|260407089|gb|EEX00566.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624] gi|292827169|gb|EFF85534.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024] gi|325123603|gb|ADY83126.1| 50S ribosomal protein L4 [Acinetobacter calcoaceticus PHEA-2] Length = 200 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|126643094|ref|YP_001086078.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978] gi|169632351|ref|YP_001706087.1| 50S ribosomal protein L4 [Acinetobacter baumannii SDF] gi|169794595|ref|YP_001712388.1| 50S ribosomal protein L4 [Acinetobacter baumannii AYE] gi|184159597|ref|YP_001847936.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU] gi|213158834|ref|YP_002320832.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057] gi|215482184|ref|YP_002324366.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294] gi|239503233|ref|ZP_04662543.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB900] gi|260557028|ref|ZP_05829245.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606] gi|294839746|ref|ZP_06784429.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013113] gi|294842654|ref|ZP_06787337.1| 50S ribosomal protein L4 [Acinetobacter sp. 6014059] gi|294860424|ref|ZP_06798193.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013150] gi|301345011|ref|ZP_07225752.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB056] gi|301512058|ref|ZP_07237295.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB058] gi|301596105|ref|ZP_07241113.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB059] gi|166234625|sp|A3M982|RL4_ACIBT RecName: Full=50S ribosomal protein L4 gi|226730599|sp|B7GW03|RL4_ACIB3 RecName: Full=50S ribosomal protein L4 gi|226730600|sp|B7IA38|RL4_ACIB5 RecName: Full=50S ribosomal protein L4 gi|226730601|sp|B2HZM1|RL4_ACIBC RecName: Full=50S ribosomal protein L4 gi|226730602|sp|B0VQR9|RL4_ACIBS RecName: Full=50S ribosomal protein L4 gi|226730603|sp|B0V6W9|RL4_ACIBY RecName: Full=50S ribosomal protein L4 gi|126388978|gb|ABO13476.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978] gi|169147522|emb|CAM85383.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter baumannii AYE] gi|169151143|emb|CAO99815.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter baumannii] gi|183211191|gb|ACC58589.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU] gi|213057994|gb|ACJ42896.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057] gi|213987315|gb|ACJ57614.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294] gi|260409634|gb|EEX02935.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606] gi|322509507|gb|ADX04961.1| 50S ribosomal protein L4 [Acinetobacter baumannii 1656-2] gi|323519527|gb|ADX93908.1| 50S ribosomal protein L4 [Acinetobacter baumannii TCDC-AB0715] Length = 200 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|116515258|ref|YP_802887.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285346|sp|Q057A5|RL4_BUCCC RecName: Full=50S ribosomal protein L4 gi|58384691|gb|AAW72706.1| 50S ribosomal protein L4 [Buchnera aphidicola (Cinara cedri)] gi|116257112|gb|ABJ90794.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 201 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 1/192 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + ++SE IF + ++ +++ R+R G K RSEV+ +G K + QKGTGRAR Sbjct: 11 IYNISESIFNKVFNEPLVHQIIVCYLARRRQGSKAQKSRSEVSGSGKKPWRQKGTGRARS 70 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +R GG F P + KK+ A++ LS+ N + + + K Sbjct: 71 GSLRSPIWRSGGVTFAAKPKKYKLKMNKKMYRYAIKSILSELIRQNRFFLFKEFIIEFPK 130 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK L+ + ++L + LII + + + A+RN+ ++ ++ V+ IN ++ K++++ Sbjct: 131 TKILLKKLELINLKSVLIITAHK-NTSLLYASRNLYHVCVINVKSINPVILISYEKVLIT 189 Query: 196 KSAIEALEDRFK 207 SAI+ +E FK Sbjct: 190 LSAIKKIEVMFK 201 >gi|312069025|ref|XP_003137489.1| hypothetical protein LOAG_01903 [Loa loa] gi|307767347|gb|EFO26581.1| hypothetical protein LOAG_01903 [Loa loa] Length = 746 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 4/194 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +IS+ IF P+ +L R + WQ + + +K + E+ G K + QK TGR Sbjct: 513 LISLHPCIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHA 572 Query: 76 SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN---LVS 131 S FR GG A G P + LP +R L A++ K ND++++D+ L S Sbjct: 573 GSIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCVAVTIKHAQNDLVIVDDFASLPS 632 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 E + + + R S I + ++ N +IP N++PV GIN + +++ Sbjct: 633 DEAQFVHDLADSRNWGYSVLFINESSEVSGNLAKVCDDIPTFNVMPVYGINCFSLVKHDT 692 Query: 192 LVLSKSAIEALEDR 205 +V S +A+ + R Sbjct: 693 VVFSLAALRLFQSR 706 >gi|283956162|ref|ZP_06373647.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336] gi|283792316|gb|EFC31100.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336] Length = 204 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHAKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+LV + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLVIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|134108222|ref|XP_777062.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259747|gb|EAL22415.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var. neoformans B-3501A] Length = 406 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 86/184 (46%), Gaps = 5/184 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 VI++ D+FA ++ IL R + W + R G +K RS VAY+G K+ QKGTG+AR Sbjct: 125 VIALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARA 184 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S RGG P ALP+KVR L +R ALS K + + V+ NL E Sbjct: 185 GDASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNL--NEAG 242 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K RA L++AL + D Q N + VQ + + L + + Sbjct: 243 WKGTNEAKRA--LADALTFPEVE-DSEMQATKTNTEPVAQDAVQAVEKVNELEGTVPEAT 299 Query: 196 KSAI 199 SAI Sbjct: 300 SSAI 303 >gi|262280224|ref|ZP_06058008.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202] gi|299768667|ref|YP_003730693.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1] gi|262258002|gb|EEY76736.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202] gi|298698755|gb|ADI89320.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1] Length = 200 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSTRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAIAAPKTKELLAKLGDLNAARALIVTEA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|157414162|ref|YP_001485028.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215] gi|166990951|sp|A8G761|RL4_PROM2 RecName: Full=50S ribosomal protein L4 gi|157388737|gb|ABV51442.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215] Length = 210 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +++ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D+ +++ S K+ KT ++ L + L+I D + + NI + L Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDV-IKKSINNIEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+DIL +KL++ +SAI+ +++ + Sbjct: 178 IAADQLNVFDILNANKLLIGQSAIDKIQEVY 208 >gi|294155416|ref|YP_003559800.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145] gi|291600321|gb|ADE19817.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145] Length = 360 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 12/212 (5%) Query: 1 MIELSVRNL---DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 +E S +NL D + + SE I+ +Q I +L ++ R R G + K R++V Sbjct: 156 TVETSTKNLVKFDAKLPSELFASEKIY----EQAIFDTILSDRASR-RQGTHQVKNRAQV 210 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSD 116 + TG K + QKGTGRAR S F GGG+AFGP + KKVR A AL+ Sbjct: 211 SGTGKKPWRQKGTGRARTGSLRTPVFVGGGRAFGPQSEKNYSLKVNKKVRYAAFVSALT- 269 Query: 117 KFCSNDIMV-IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +ND V ID+L + TK LV + L +++ I D +A N+ N+ Sbjct: 270 -LLANDKAVAIDDLKLNKISTKELVKKLTTLKINDVRHILIVTEDETLFKSAANLSNVVT 328 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++V ++ +V+SK++++ LE + K Sbjct: 329 VKPHSLSVELLIAADVMVISKNSLKVLEGKIK 360 >gi|171462880|ref|YP_001796993.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226730704|sp|B1XSQ2|RL4_POLNS RecName: Full=50S ribosomal protein L4 gi|171192418|gb|ACB43379.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 206 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 6/201 (2%) Query: 12 EDKGV----ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 +D G+ + S ++F + + ++ +V+ R G K R +V +T K + Q Sbjct: 7 QDNGILGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTTKKPWRQ 66 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVI 126 KGTGRAR S +RGGG+ F P + KK+ +R LS + VI Sbjct: 67 KGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLAREGRLNVI 126 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D KTK L + +A+ L + LII Q+ N LA+RN+ + ++ Q + + Sbjct: 127 DQFNLDAPKTKVLAEKMKAMGLDSVLIIVD-QVSENLYLASRNLHKVAVVEPQHADPLAL 185 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 ++ K+++SK+AI +E+ K Sbjct: 186 VQYKKVLVSKAAITKIEELLK 206 >gi|58262906|ref|XP_568863.1| ribosomal protein L4 [Cryptococcus neoformans var. neoformans JEC21] gi|57223513|gb|AAW41556.1| ribosomal protein L4, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 406 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 86/184 (46%), Gaps = 5/184 (2%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 VI++ D+FA ++ IL R + W + R G +K RS VAY+G K+ QKGTG+AR Sbjct: 125 VIALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARA 184 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S RGG P ALP+KVR L +R ALS K + + V+ NL E Sbjct: 185 GDASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNL--NEAG 242 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K RA L++AL + D Q N + VQ + + L + + Sbjct: 243 WKGTNEAKRA--LADALTFPEVE-DSEMQATKTNTEPVAQDAVQAVEKVNELEGTVPEAT 299 Query: 196 KSAI 199 SAI Sbjct: 300 SSAI 303 >gi|256821663|ref|YP_003145626.1| 50S ribosomal protein L4/L1e [Kangiella koreensis DSM 16069] gi|256795202|gb|ACV25858.1| ribosomal protein L4/L1e [Kangiella koreensis DSM 16069] Length = 200 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G I VSE F + + ++ +V+ R G K RS V+ G K + QKGTGRAR Sbjct: 9 GAIKVSEVAFGREFNESLVHQVVVAYLAAARAGTRAQKNRSAVSGGGKKPWRQKGTGRAR 68 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 + +R GG F P + +K+ A++ LS+ ++V+++ Sbjct: 69 AGTIRSPLWRKGGVTFAAQPQDYTQKVNRKMYRGAIQSILSELVRQERLIVVEDFSVSAP 128 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + LD+ ALI+ +D N LA+RN+ +++ V ++ ++ K+++ Sbjct: 129 KTKELAAKLKELDVKEALIVTDS-VDENLFLASRNLYKVDVRDVNALDPVSLIGFDKVIM 187 Query: 195 SKSAIEALED 204 + AI+ +E+ Sbjct: 188 TVPAIKKVEE 197 >gi|33862113|ref|NP_893674.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577194|sp|Q7UZU8|RL4_PROMP RecName: Full=50S ribosomal protein L4 gi|33634331|emb|CAE20016.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 210 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRIS- 119 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPN--- 172 D +++ S + KT ++ L + L+I LD + ++I N Sbjct: 120 -DFKTVEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVI----LDNPSDVIKKSINNLEK 174 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+ +NV+DIL +KLV+ +SAI +++ + Sbjct: 175 VKLIAADQLNVFDILNANKLVIGQSAINKIQEVY 208 >gi|218192491|gb|EEC74918.1| hypothetical protein OsI_10864 [Oryza sativa Indica Group] Length = 324 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + KR G + + R EV G Sbjct: 68 LPVLSFTGEKVGEVAL--DLKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGG 125 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ ++ Sbjct: 126 RKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAVAD 185 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + KT+ V + LD + N +L+ RNI ++ +L Sbjct: 186 DAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLKML 245 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +AI L R+ Sbjct: 246 TPRTLNLYDILDARKLFFTPAAINYLNSRY 275 >gi|115452095|ref|NP_001049648.1| Os03g0265400 [Oryza sativa Japonica Group] gi|108707338|gb|ABF95133.1| 50S ribosomal protein L4, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113548119|dbj|BAF11562.1| Os03g0265400 [Oryza sativa Japonica Group] gi|215678998|dbj|BAG96428.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692528|dbj|BAG87948.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737540|dbj|BAG96670.1| unnamed protein product [Oryza sativa Japonica Group] Length = 323 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + KR G + + R EV G Sbjct: 67 LPVLSFTGEKVGEVAL--DLKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGG 124 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ ++ Sbjct: 125 RKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAVAD 184 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + KT+ V + LD + N +L+ RNI ++ +L Sbjct: 185 DAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLKML 244 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +AI L R+ Sbjct: 245 TPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|222624621|gb|EEE58753.1| hypothetical protein OsJ_10246 [Oryza sativa Japonica Group] Length = 323 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + KR G + + R EV G Sbjct: 67 LPVLSFTGEKVGEVAL--DLKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGG 124 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ ++ Sbjct: 125 RKPYQQKKTGKARRGSMRTPVRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAVAD 184 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + KT+ V + LD + N +L+ RNI ++ +L Sbjct: 185 DAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLKML 244 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +AI L R+ Sbjct: 245 TPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|330927709|ref|XP_003301969.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1] gi|311322926|gb|EFQ89938.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1] Length = 565 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R EV + K+ QKGTG AR + RG Sbjct: 82 LPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTGHARLGDRMSPMLRG 141 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-KTKYLVTRFR 144 GG AFGP P LPKKV LA R ALS +F +++++DN + E T+ L FR Sbjct: 142 GGVAFGPKPRDFASELPKKVYDLAFRTALSYRFRKGELIIVDNAMELESPSTRLLADIFR 201 >gi|315304964|ref|ZP_07875049.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596] gi|313626666|gb|EFR95714.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596] Length = 109 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 61/105 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKV 105 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKV 105 >gi|315639320|ref|ZP_07894482.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21] gi|315480646|gb|EFU71288.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21] Length = 204 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK N + + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAIKNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|53803549|ref|YP_114787.1| 50S ribosomal protein L4 [Methylococcus capsulatus str. Bath] gi|81681358|sp|Q605B3|RL4_METCA RecName: Full=50S ribosomal protein L4 gi|53757310|gb|AAU91601.1| ribosomal protein L4 [Methylococcus capsulatus str. Bath] Length = 205 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + LS+ ++ G + VS+ +F + ++ +++ R G K RS+V+ G Sbjct: 1 MSLSIPKIENGAAGDLEVSDKVFGQGFNESLVHQLVVGYLAAARSGTKAQKSRSDVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+G AR + +R GG F L KK+ A+R S+ Sbjct: 61 KKPWKQKGSGHARAGTTRSPLWRTGGVTFAASNRNYRQKLNKKMYRAAVRSIFSELLRQG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V D +V KT+ L + ++ +I+ QLD N L++RN+PN+++ + Sbjct: 121 RLVVSDGIVPTSPKTRELAAKLKSFGEGYTVIL-AEQLDLNLALSSRNLPNVSINTADTL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + D++ +++ + SAI LE R Sbjct: 180 SPVDLVHAERVIATSSAIRKLEVRL 204 >gi|29893583|gb|AAP06837.1| unknown protein [Oryza sativa Japonica Group] Length = 426 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + KR G + + R EV G Sbjct: 67 LPVLSFTGEKVGEVAL--DLKSAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGG 124 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ ++ Sbjct: 125 RKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAVAD 184 Query: 122 DIMVI---DNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V+ D + KT+ V + LD + N +L+ RNI ++ +L Sbjct: 185 DAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLKML 244 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +AI L R+ Sbjct: 245 TPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|90417570|ref|ZP_01225488.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207] gi|90330591|gb|EAS45887.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207] Length = 204 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 101/203 (49%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G +KG + VSE F + Q ++ + + R G K RS V+ G Sbjct: 1 MELAIATPKG-NKGTVEVSELAFGTEFNQDLVHQTVVAFLAGARQGTRAQKNRSAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +RGGG F P L +K+ A+R +S+ + Sbjct: 60 RKPHAQKGSGRARAGTIRSPIWRGGGVTFAATPQDHSQKLNRKMYRAAMRSIVSELARQD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L+ + + L+ +I+ ++ N LA+RN+ +++ + Sbjct: 120 RLIVVEEFGIDAPKTKLLIAKLQEFSLTEVMIVT-EEVSENLYLASRNLHKVDVRDAAAV 178 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ LE+ Sbjct: 179 DPVSLINFDKVLVTVPALKKLEE 201 >gi|218961432|ref|YP_001741207.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans] gi|167730089|emb|CAO81001.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans] Length = 211 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 8 NLDGEDKGVISVSEDIFAL--KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 N+ GE G + + E IF + + +L V+ +R G + K RS A + K++ Sbjct: 8 NMQGELIGEVDLPEGIFEVDVNAPKILLNEVVTMFLANQRQGTVQKKNRSMTAGSTRKLF 67 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG AR ++ GGKAF P +P+ + LAL+ AL+D+ IM+ Sbjct: 68 RQKGTGNARVGTRRSPIRVHGGKAFAIYPKDWYRKIPRTKKRLALKVALTDRAREGRIMI 127 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +DNL ++ TK V + ++ DG + A N+P + +N Sbjct: 128 VDNLSFEKPNTKLAVELLNKIIPEKGYKLIVTDGHHIPTVKSFA--NLPEVMTDRADSLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 Y++L+ S ++++ A++ +E+ F Sbjct: 186 AYEVLKSSYIIMTDEALKKVEEVF 209 >gi|300309457|ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum seropedicae SmR1] gi|300072242|gb|ADJ61641.1| 50S ribosomal subunit L4 protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV++T Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ + KTK L + + + + + L+I LD LA+RN+P + ++ + Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDS-LDEKLLLASRNLPGVLVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ ++++K A+ +E+ Sbjct: 180 ADPVSLVYFKNVLITKPALAKIEE 203 >gi|62184738|ref|YP_219523.1| 50S ribosomal protein L4 [Chlamydophila abortus S26/3] gi|81313079|sp|Q5L719|RL4_CHLAB RecName: Full=50S ribosomal protein L4 gi|62147805|emb|CAH63551.1| putative 50S ribosomal protein l4 [Chlamydophila abortus S26/3] Length = 224 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSE 56 M+ LS + G G + + + FA Q+G ++ L KR + ++ RSE Sbjct: 1 MVLLSKFDFFGNKAGEVELPDAFFA---QEGSGLQLVKDYLVAIRANKRQWSACTRNRSE 57 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115 V+++ K + QKGTG AR + QFRGGG FGP P H + KK + A+R LS Sbjct: 58 VSHSTKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLS 117 Query: 116 DKFCSNDIMVIDN------LVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLA 166 K +N ++V D+ L S + K + ++ L ID Q + + +L+ Sbjct: 118 QKIQTNHLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLS 177 Query: 167 ARNIPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 RN+P + IN YD++ +V+S+ A+ L Sbjct: 178 LRNLPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214 >gi|33864000|ref|NP_895560.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313] gi|46577197|sp|Q7V541|RL4_PROMM RecName: Full=50S ribosomal protein L4 gi|33635584|emb|CAE21908.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313] Length = 211 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E V + G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR + GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL-----------AARN 169 D++V+ K+ V + R ++S+ALI G D + + RN Sbjct: 119 EDVIVV-----KDFGNSLKVPKTR--EISDALIRLGLAADAKVLIILSTPSEIIRRSVRN 171 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + L+ +NV+D+L + LVLS+ A+ +++ + Sbjct: 172 LEKVKLIAADQLNVFDLLHANSLVLSEEALAKIQEVY 208 >gi|148887418|sp|Q4A5C2|RL4_MYCS5 RecName: Full=50S ribosomal protein L4 gi|144575209|gb|AAZ44049.2| 50S ribosomal protein L4 [Mycoplasma synoviae 53] Length = 229 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 QQ I +L ++ R R G + K R+ V+ +G K + QKGTGRARHSS+ + GGG+ Sbjct: 49 QQAIFDSILSERASR-RQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGGGR 107 Query: 89 AFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD 147 AFGP + + KKV+ LA R AL+ ++ +++++ + TK L + ++L+ Sbjct: 108 AFGPQSVKNYSLKVNKKVKQLAFRSALT-MLVNDKAVLVEDFKMDKISTKDLSQKLKSLN 166 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + + + ++ N+ N+ L +NV ++R L++ +++ L +R Sbjct: 167 VDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 224 >gi|71894652|ref|YP_278760.1| 50S ribosomal protein L4 [Mycoplasma synoviae 53] Length = 201 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 QQ I +L ++ R R G + K R+ V+ +G K + QKGTGRARHSS+ + GGG+ Sbjct: 21 QQAIFDSILSERASR-RQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGGGR 79 Query: 89 AFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD 147 AFGP + + KKV+ LA R AL+ ++ +++++ + TK L + ++L+ Sbjct: 80 AFGPQSVKNYSLKVNKKVKQLAFRSALT-MLVNDKAVLVEDFKMDKISTKDLSQKLKSLN 138 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + + + ++ N+ N+ L +NV ++R L++ +++ L +R Sbjct: 139 VDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 196 >gi|124023996|ref|YP_001018303.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303] gi|166199842|sp|A2CC28|RL4_PROM3 RecName: Full=50S ribosomal protein L4 gi|123964282|gb|ABM79038.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303] Length = 211 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 24/219 (10%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E V + G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR + GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARL-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL-----------AA 167 D++V+ + K KT+ ++S+AL+ G D + + Sbjct: 119 EDVIVVKDFGDSLKAPKTR---------EISDALVRLGVAADAKVLIILSTPSEIIRRSV 169 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 RN+ + L+ +NV+D+L + LVLS+ A+ +++ + Sbjct: 170 RNLEKVKLIAADQLNVFDLLHANSLVLSEEALAKIQEVY 208 >gi|216408866|gb|ACJ73116.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKNANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESI 200 >gi|216408928|gb|ACJ73147.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVSEVNAYLVSVFNAVIMEKSALESI 200 >gi|216408820|gb|ACJ73093.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408822|gb|ACJ73094.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408824|gb|ACJ73095.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408830|gb|ACJ73098.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408842|gb|ACJ73104.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408912|gb|ACJ73139.1| ribosomal protein L4 [Campylobacter coli] gi|216408914|gb|ACJ73140.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|216408922|gb|ACJ73144.1| ribosomal protein L4 [Campylobacter coli] gi|216408924|gb|ACJ73145.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ + +N Y I + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDISEVNAYLISVFNAVIIEKSALESI 200 >gi|216408856|gb|ACJ73111.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDAKAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESI 200 >gi|255954255|ref|XP_002567880.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589591|emb|CAP95738.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255] Length = 311 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 ++ R D E + ++ S + + + IL R + ++ R G + +K R +V + K Sbjct: 69 MTYRWPDLEPQRLVHYSRRLLQMPTRHDILHRAVVYEGDSTRQGSASTKWRDDVHGSHKK 128 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 +Y QKG+GRAR K RGGG AFGP P LP+K+ A R ALS + ++ Sbjct: 129 LYAQKGSGRARAGDKMSPVRRGGGVAFGPHPRDFSTDLPRKIYDQAWRIALSHRLSRGEL 188 Query: 124 MVIDNLVS-KECKTKYLV--------------TRFRALDLSNALIIDGCQLDRNFQLAAR 168 +V+DN + E + + + + F L+ N + D + F AR Sbjct: 189 IVVDNTIDINEASSPFFIKNLIQAHGWYHKGRSTFVTLE-PNEMFSDAVE---KFGNHAR 244 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 I V+ ++V ++L ++LV+ K+A+ + Sbjct: 245 TI------CVEDLDVKNVLERARLVIEKNALHKI 272 >gi|157415928|ref|YP_001483184.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116] gi|172047270|sp|A8FP20|RL4_CAMJ8 RecName: Full=50S ribosomal protein L4 gi|157386892|gb|ABV53207.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116] gi|216408654|gb|ACJ73010.1| ribosomal protein L4 [Campylobacter jejuni] gi|307748566|gb|ADN91836.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni M1] gi|315931326|gb|EFV10295.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 204 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESI 200 >gi|189207547|ref|XP_001940107.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976200|gb|EDU42826.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 575 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R EV + K+ QKGTG AR + RG Sbjct: 92 LPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTGHARLGDRMSPMLRG 151 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-KTKYLVTRFR 144 GG AFGP P LPKKV LA R ALS +F +++++DN + E T+ L FR Sbjct: 152 GGVAFGPKPRDFSSELPKKVYDLAFRTALSYRFRKGELIIVDNAMELESPSTRLLADIFR 211 >gi|283953683|ref|ZP_06371214.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414] gi|283794724|gb|EFC33462.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414] Length = 204 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKGVKGALFTADSLAIESGKTKDANAVIKKLGIKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|169625680|ref|XP_001806243.1| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15] gi|160705705|gb|EAT76488.2| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15] Length = 499 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 64/115 (55%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R EV + K+ QKG+GRAR + RG Sbjct: 36 LPTRRDILHRAVVYEGDSTRLGTASTKTRYEVHGSRRKIRPQKGSGRARLGDRKSPMLRG 95 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV 140 GG AFGP P LPKKV LA R ALS +F +++++DN + E + L+ Sbjct: 96 GGVAFGPKPRDFATELPKKVYDLAWRTALSYRFRKGELIIVDNAIEIESPSPRLL 150 >gi|56477595|ref|YP_159184.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1] gi|81598743|sp|Q5P331|RL4_AZOSE RecName: Full=50S ribosomal protein L4 gi|56313638|emb|CAI08283.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1] Length = 206 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G + S+ +F + ++ +V+ R G KGR+EV+ + Sbjct: 1 MELKLLNDQGAQSATLQASDALFGRDYNEALIHQVVVAYMANARSGNRAQKGRAEVSKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L +K+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPLWRGGGRVFPNSPEDNFSQKLNRKMYRAGVASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++N + KT+ L + + + L + L+I + D N L++RN+ + +L V Sbjct: 121 DRLAIVENFSVEAPKTRLLSQKLKGMGLDSVLVITD-EFDENLFLSSRNLHKVLVLEVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ +++++K A+ +E+ ++ Sbjct: 180 TDPVSLVHYDRVIVTKGALAKMEEAWQ 206 >gi|121612191|ref|YP_001001350.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|148926797|ref|ZP_01810476.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8486] gi|167006239|ref|ZP_02271997.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|166234652|sp|A1W1V9|RL4_CAMJJ RecName: Full=50S ribosomal protein L4 gi|121504148|gb|EAQ72729.2| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|145844522|gb|EDK21629.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8486] gi|216408666|gb|ACJ73016.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408668|gb|ACJ73017.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408670|gb|ACJ73018.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408672|gb|ACJ73019.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408674|gb|ACJ73020.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408676|gb|ACJ73021.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408678|gb|ACJ73022.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408680|gb|ACJ73023.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408682|gb|ACJ73024.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408834|gb|ACJ73100.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408836|gb|ACJ73101.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408838|gb|ACJ73102.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408840|gb|ACJ73103.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408858|gb|ACJ73112.1| ribosomal protein L4 [Campylobacter coli] gi|216408860|gb|ACJ73113.1| ribosomal protein L4 [Campylobacter coli] gi|216408862|gb|ACJ73114.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408888|gb|ACJ73127.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408890|gb|ACJ73128.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408918|gb|ACJ73142.1| ribosomal protein L4 [Campylobacter coli] gi|216408920|gb|ACJ73143.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|166154742|ref|YP_001654860.1| 50S ribosomal protein L4 [Chlamydia trachomatis 434/Bu] gi|166155617|ref|YP_001653872.1| 50S ribosomal protein L4 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336016|ref|ZP_07224260.1| 50S ribosomal protein L4 [Chlamydia trachomatis L2tet1] gi|226730639|sp|B0B8A1|RL4_CHLT2 RecName: Full=50S ribosomal protein L4 gi|226730641|sp|B0BCG6|RL4_CHLTB RecName: Full=50S ribosomal protein L4 gi|165930730|emb|CAP04227.1| LSU ribosomal protein L1E [Chlamydia trachomatis 434/Bu] gi|165931605|emb|CAP07181.1| LSU ribosomal protein L1E [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 222 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F +Q + ++ Q+ KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKELGKFELPDAFFTEGREQSVKDYLVAIQA-NKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVSKEC----KTKYLVTRFRALDLS--NALIIDGCQL---DRNFQLAARNI 170 + ++V +N V KTK + + ++ L +D + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDSLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + I+ YDI +V+S+ A+E L Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELL 212 >gi|254483427|ref|ZP_05096656.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium HTCC2148] gi|214036301|gb|EEB76979.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium HTCC2148] Length = 205 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V D G +SVS+ FA + + ++ +V+ R G K R+ V+ G Sbjct: 1 MELNVVKAGNADAGKVSVSDVAFAKEYNEDLVHQVVTAYMAGSRQGTRAQKNRAAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ ALR +S+ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRTIMSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++L ++ KTK L+ + + NALI+ +++ N LA+RN+ +++ V G+ Sbjct: 121 RLVVVESLDLEQPKTKLLLEQLGGYGVDNALIVS-AEVNENLYLASRNLHKVDVRDVDGV 179 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K++++ A++ LE+ Sbjct: 180 DPVSLIAHDKVIVTVDAVKKLEE 202 >gi|216408930|gb|ACJ73148.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLACRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|33866600|ref|NP_898159.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102] gi|46577186|sp|Q7U4J9|RL4_SYNPX RecName: Full=50S ribosomal protein L4 gi|33633378|emb|CAE08583.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102] Length = 211 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +R+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MADCVIRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARV-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D+ V+ + + + KTK + L ++ ++I + + + RN+ + L+ Sbjct: 119 EDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 AANQLNVFDLLHANALVLGEDALATIQEVY 208 >gi|216408932|gb|ACJ73149.1| ribosomal protein L4 [Campylobacter coli] gi|283558007|gb|ADB27035.1| L4 ribosomal protein [Campylobacter coli] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|57238713|ref|YP_179844.1| 50S ribosomal protein L4 [Campylobacter jejuni RM1221] gi|205355720|ref|ZP_03222490.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8421] gi|305432599|ref|ZP_07401760.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20] gi|81557380|sp|Q5HS91|RL4_CAMJR RecName: Full=50S ribosomal protein L4 gi|57167517|gb|AAW36296.1| ribosomal protein L4 [Campylobacter jejuni RM1221] gi|108863172|gb|ABG22151.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863174|gb|ABG22152.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863176|gb|ABG22153.1| 50S ribosomal protein L4 [Campylobacter coli] gi|205346497|gb|EDZ33130.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8421] gi|216408546|gb|ACJ72956.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408548|gb|ACJ72957.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408550|gb|ACJ72958.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408552|gb|ACJ72959.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408554|gb|ACJ72960.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408556|gb|ACJ72961.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408558|gb|ACJ72962.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408560|gb|ACJ72963.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408562|gb|ACJ72964.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408564|gb|ACJ72965.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408566|gb|ACJ72966.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408568|gb|ACJ72967.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408570|gb|ACJ72968.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408572|gb|ACJ72969.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408574|gb|ACJ72970.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408576|gb|ACJ72971.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408578|gb|ACJ72972.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408580|gb|ACJ72973.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408582|gb|ACJ72974.1| ribosomal protein L4 [Campylobacter coli] gi|216408584|gb|ACJ72975.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408586|gb|ACJ72976.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408656|gb|ACJ73011.1| ribosomal protein L4 [Campylobacter coli] gi|216408658|gb|ACJ73012.1| ribosomal protein L4 [Campylobacter coli] gi|216408660|gb|ACJ73013.1| ribosomal protein L4 [Campylobacter coli] gi|216408662|gb|ACJ73014.1| ribosomal protein L4 [Campylobacter coli] gi|216408690|gb|ACJ73028.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408692|gb|ACJ73029.1| ribosomal protein L4 [Campylobacter coli] gi|216408694|gb|ACJ73030.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408696|gb|ACJ73031.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408698|gb|ACJ73032.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408700|gb|ACJ73033.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408702|gb|ACJ73034.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408704|gb|ACJ73035.1| ribosomal protein L4 [Campylobacter coli] gi|216408706|gb|ACJ73036.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408708|gb|ACJ73037.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408710|gb|ACJ73038.1| ribosomal protein L4 [Campylobacter coli] gi|216408712|gb|ACJ73039.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408714|gb|ACJ73040.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408716|gb|ACJ73041.1| ribosomal protein L4 [Campylobacter coli] gi|216408718|gb|ACJ73042.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408720|gb|ACJ73043.1| ribosomal protein L4 [Campylobacter coli] gi|216408722|gb|ACJ73044.1| ribosomal protein L4 [Campylobacter coli] gi|216408724|gb|ACJ73045.1| ribosomal protein L4 [Campylobacter coli] gi|216408726|gb|ACJ73046.1| ribosomal protein L4 [Campylobacter coli] gi|216408728|gb|ACJ73047.1| ribosomal protein L4 [Campylobacter coli] gi|216408730|gb|ACJ73048.1| ribosomal protein L4 [Campylobacter coli] gi|216408732|gb|ACJ73049.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408734|gb|ACJ73050.1| ribosomal protein L4 [Campylobacter coli] gi|216408736|gb|ACJ73051.1| ribosomal protein L4 [Campylobacter coli] gi|216408738|gb|ACJ73052.1| ribosomal protein L4 [Campylobacter coli] gi|216408740|gb|ACJ73053.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408742|gb|ACJ73054.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408744|gb|ACJ73055.1| ribosomal protein L4 [Campylobacter coli] gi|216408746|gb|ACJ73056.1| ribosomal protein L4 [Campylobacter coli] gi|216408748|gb|ACJ73057.1| ribosomal protein L4 [Campylobacter coli] gi|216408750|gb|ACJ73058.1| ribosomal protein L4 [Campylobacter coli] gi|216408752|gb|ACJ73059.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408754|gb|ACJ73060.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408756|gb|ACJ73061.1| ribosomal protein L4 [Campylobacter coli] gi|216408758|gb|ACJ73062.1| ribosomal protein L4 [Campylobacter coli] gi|216408760|gb|ACJ73063.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408762|gb|ACJ73064.1| ribosomal protein L4 [Campylobacter coli] gi|216408764|gb|ACJ73065.1| ribosomal protein L4 [Campylobacter coli] gi|216408766|gb|ACJ73066.1| ribosomal protein L4 [Campylobacter coli] gi|216408768|gb|ACJ73067.1| ribosomal protein L4 [Campylobacter coli] gi|216408770|gb|ACJ73068.1| ribosomal protein L4 [Campylobacter coli] gi|216408772|gb|ACJ73069.1| ribosomal protein L4 [Campylobacter coli] gi|216408774|gb|ACJ73070.1| ribosomal protein L4 [Campylobacter coli] gi|216408776|gb|ACJ73071.1| ribosomal protein L4 [Campylobacter coli] gi|216408778|gb|ACJ73072.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408780|gb|ACJ73073.1| ribosomal protein L4 [Campylobacter coli] gi|216408782|gb|ACJ73074.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408784|gb|ACJ73075.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408786|gb|ACJ73076.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408788|gb|ACJ73077.1| ribosomal protein L4 [Campylobacter coli] gi|216408790|gb|ACJ73078.1| ribosomal protein L4 [Campylobacter coli] gi|216408792|gb|ACJ73079.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408794|gb|ACJ73080.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408796|gb|ACJ73081.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408798|gb|ACJ73082.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408800|gb|ACJ73083.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408802|gb|ACJ73084.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408804|gb|ACJ73085.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408806|gb|ACJ73086.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408808|gb|ACJ73087.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408810|gb|ACJ73088.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408812|gb|ACJ73089.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408814|gb|ACJ73090.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408816|gb|ACJ73091.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408902|gb|ACJ73134.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408916|gb|ACJ73141.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408934|gb|ACJ73150.1| ribosomal protein L4 [Campylobacter coli] gi|283558005|gb|ADB27034.1| L4 ribosomal protein [Campylobacter coli] gi|283558009|gb|ADB27036.1| L4 ribosomal protein [Campylobacter coli] gi|283558011|gb|ADB27037.1| L4 ribosomal protein [Campylobacter coli] gi|304444310|gb|EFM36962.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20] gi|315059152|gb|ADT73481.1| LSU ribosomal protein L4p [Campylobacter jejuni subsp. jejuni S3] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|216408686|gb|ACJ73026.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408688|gb|ACJ73027.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERSYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|108863168|gb|ABG22149.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863170|gb|ABG22150.1| 50S ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|145588243|ref|YP_001154840.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189029513|sp|A4SUW2|RL4_POLSQ RecName: Full=50S ribosomal protein L4 gi|145046649|gb|ABP33276.1| LSU ribosomal protein L4P [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 206 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G + S ++F + + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLQDNGTLGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D KTK L + +A+ L + LII Q+ N LA+RN+ + + Q Sbjct: 121 GRLNVVDQFSLDAPKTKVLADKVKAMGLDSVLIIVD-QVSENLYLASRNLHKVAVCEPQH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + +++ K+++SK+AI +E+ K Sbjct: 180 ADPLALVQYKKVLVSKAAIAKIEELLK 206 >gi|255079010|ref|XP_002503085.1| predicted protein [Micromonas sp. RCC299] gi|226518351|gb|ACO64343.1| predicted protein [Micromonas sp. RCC299] Length = 276 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 8/209 (3%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++S + DG G ++ D+ KP +G++ + + R G + + +SEV Sbjct: 63 QVSKVSFDGASAGTATL--DVKVAKPDVAKGLVHKYVVMVRQNARRGTASTLTKSEVRGG 120 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + KK R LA+ A+ + Sbjct: 121 GRKPFKQKGTGNARAGSSRTPLKPGGGVVFGPKPKDWSIKMNKKERRLAMATAIQSAAAA 180 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPNINLLP 177 + ++V+D+L KTK + T ++ ++ A II L+ RN+ + Sbjct: 181 SSMIVVDSLAGAAPKTKAMATALKSWGVAEGEKAYIIT-KDAPEGVTLSTRNMARVVQTD 239 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NVYD+L K+V+ +SA++ + D + Sbjct: 240 IKHLNVYDVLNADKVVVEESALQYINDFY 268 >gi|216408664|gb|ACJ73015.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVPVFNAVIMEKSALESI 200 >gi|222823104|ref|YP_002574677.1| 50S ribosomal protein L4 [Campylobacter lari RM2100] gi|254803723|sp|B9KEE1|RL4_CAMLR RecName: Full=50S ribosomal protein L4 gi|222538325|gb|ACM63426.1| 50S ribosomal protein L4 [Campylobacter lari RM2100] Length = 204 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL DK N + +D+L + KTK + L L + LI+ LD Sbjct: 103 KQKRLALERALEDKAAKNALFSVDSLSIESGKTKDANAVIKKLGLKDVLIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ K+A+E++ Sbjct: 162 LLAFRNLANCYVVDVNEVNAYLVSVFNAVIIEKAALESI 200 >gi|145249828|ref|XP_001401253.1| 50S ribosomal protein L4 [Aspergillus niger CBS 513.88] gi|134081937|emb|CAK97203.1| unnamed protein product [Aspergillus niger] Length = 289 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 6/178 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V +G K++ QKGTGRAR K RGGG Sbjct: 93 RKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGRKLHAQKGTGRARVGDKKSPIRRGGGV 152 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALD 147 AFGP P LP+K+ A R ALS ++ ++++DN ++ E T ++V ++ Sbjct: 153 AFGPHPRDFSTELPQKIYDQAWRIALSYRYKRGQLIIVDNEIALPEGATPHIVEEIFKVN 212 Query: 148 -----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + +I + F+ + + +L + ++V D+L +L++ K A++ Sbjct: 213 CWGRHYGRSTLITDQPNEELFETVRQAGEHAKILDRRDVDVKDLLETGRLIIEKQALD 270 >gi|216408832|gb|ACJ73099.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408868|gb|ACJ73117.1| ribosomal protein L4 [Campylobacter coli] gi|216408870|gb|ACJ73118.1| ribosomal protein L4 [Campylobacter coli] gi|216408872|gb|ACJ73119.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408874|gb|ACJ73120.1| ribosomal protein L4 [Campylobacter coli] gi|216408876|gb|ACJ73121.1| ribosomal protein L4 [Campylobacter coli] gi|216408878|gb|ACJ73122.1| ribosomal protein L4 [Campylobacter coli] gi|216408880|gb|ACJ73123.1| ribosomal protein L4 [Campylobacter coli] gi|216408882|gb|ACJ73124.1| ribosomal protein L4 [Campylobacter coli] gi|216408884|gb|ACJ73125.1| ribosomal protein L4 [Campylobacter coli] gi|216408886|gb|ACJ73126.1| ribosomal protein L4 [Campylobacter coli] gi|283558013|gb|ADB27038.1| L4 ribosomal protein [Campylobacter coli] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|216408904|gb|ACJ73135.1| ribosomal protein L4 [Campylobacter coli] gi|216408906|gb|ACJ73136.1| ribosomal protein L4 [Campylobacter coli] gi|216408908|gb|ACJ73137.1| ribosomal protein L4 [Campylobacter coli] gi|216408910|gb|ACJ73138.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVVKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|216408588|gb|ACJ72977.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408590|gb|ACJ72978.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408592|gb|ACJ72979.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|152993894|ref|YP_001359615.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1] gi|151425755|dbj|BAF73258.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1] Length = 196 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 2/162 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPK 103 R +++K RS V+ G K + QKG GRAR S F GGG AFGP + K Sbjct: 35 RANTAQTKNRSAVSGGGKKPWAQKGGGRARAGSLRSPIFVGGGVAFGPSTNKNYDQKVNK 94 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL HAL++ + + V+DN+ + KTK + L+ + L++ D+ F Sbjct: 95 KQKKLALYHALAELAANERLFVVDNVAIESGKTKDALAFVNGLEQRDVLVVKEMIDDKTF 154 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 LA RN+ N L+ +N Y +V+ K+ + L + Sbjct: 155 -LAFRNLQNAYLVEANELNAYLAAAYHSVVIEKAVFDKLTEE 195 >gi|108863178|gb|ABG22154.1| 50S ribosomal protein L4 [Campylobacter jejuni] gi|216408844|gb|ACJ73105.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408846|gb|ACJ73106.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408848|gb|ACJ73107.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408850|gb|ACJ73108.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408852|gb|ACJ73109.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408854|gb|ACJ73110.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNIWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|321310979|ref|YP_004193308.1| 50S ribosomal protein L3 [Mycoplasma haemofelis str. Langford 1] gi|319802823|emb|CBY93469.1| ribosomal protein L4 [Mycoplasma haemofelis str. Langford 1] Length = 213 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 8/167 (4%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP----IIGVH 99 +R G +K +SEV+ TG K Y QK TGRAR S+ QFRGGG AFGP P ++GV+ Sbjct: 45 RRQGTHDTKNKSEVSGTGKKPYRQKHTGRARQGSRRNPQFRGGGVAFGPSPMRNYVVGVN 104 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQ 158 +KV LA A F S +I ++D S KTK +A S L++ + Sbjct: 105 ---RKVSRLAFASAWKGIFESENIALLDESFSSLKKTKEFQEFLGKAKLDSKKLLLLDKE 161 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + L +RN+ N+ +V D++ S L+L+K A++ L +R Sbjct: 162 SASSVFLVSRNLSNVTCRDFFHCSVRDLMNQSFLLLTKEAMDLLCER 208 >gi|216408864|gb|ACJ73115.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAYTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|154148894|ref|YP_001405698.1| 50S ribosomal protein L4 [Campylobacter hominis ATCC BAA-381] gi|166234650|sp|A7HZK7|RL4_CAMHC RecName: Full=50S ribosomal protein L4 gi|153804903|gb|ABS51910.1| ribosomal protein L4/L1 family [Campylobacter hominis ATCC BAA-381] Length = 204 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRSEV+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTANTKGRSEVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNNRNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL++K ++ I +D+L KTK + L + +ALI+ +LD Sbjct: 103 KQKRLALEFALNEKAQNDKIFAVDSLEISSGKTKDAAKFIKNLGVRDALIVKN-ELDSAT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ + +N Y + S +++ SA++++ Sbjct: 162 LLAYRNLNNCYVIDINELNAYLVAVYSAVIIETSALQSI 200 >gi|216408892|gb|ACJ73129.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWEGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KS +E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESI 200 >gi|330850883|ref|YP_004376633.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580] gi|328835703|dbj|BAK18999.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580] Length = 215 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 6/167 (3%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G +K RSEV G K + QKGTGRAR S ++GGG FGP P + K Sbjct: 49 QRQGTVSTKTRSEVRGGGRKPWRQKGTGRARAGSNRSPLWKGGGVTFGPKPRQFELKVNK 108 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQL 159 K R LAL+ + +K N +++I+NL S E KTK + + ++S +++ + Sbjct: 109 KERRLALQTLIYNK--RNKLVIINNLESDLTEPKTKAFLKICKDCEISMDQKILVVTSKK 166 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +LA +N+ N+ L+ +N +LR +++L+ AI +++ + Sbjct: 167 TPTLKLATQNLKNVELISAGHLNTLSLLRAQQIILTPLAINDIKEIY 213 >gi|329942412|ref|ZP_08291222.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10] gi|154795763|gb|ABS86878.1| ribosomal protein L4 [Chlamydophila psittaci 6BC] gi|313847649|emb|CBY16637.1| putative 50S ribosomal protein l4 [Chlamydophila psittaci RD1] gi|325507320|gb|ADZ18958.1| 50S ribosomal protein L4 [Chlamydophila psittaci 6BC] gi|328815322|gb|EGF85310.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10] gi|328914286|gb|AEB55119.1| ribosomal protein L4/L1 family [Chlamydophila psittaci 6BC] Length = 224 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSE 56 M+ LS + G G + + + FA Q+G ++ L KR + ++ RSE Sbjct: 1 MVLLSKFDFFGNKAGEVELPDSFFA---QEGSGLQLVKDYLVAIRANKRQWSACTRNRSE 57 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115 V+++ K + QKGTG AR + QFRGGG FGP P H + +K + A+R LS Sbjct: 58 VSHSTKKPFRQKGTGNARQGCLASPQFRGGGIVFGPKPKFDQHVRINRKEKRAAIRLLLS 117 Query: 116 DKFCSNDIMVIDN------LVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLA 166 K +N ++V D+ L S + K + ++ L ID Q + + +L+ Sbjct: 118 QKIQTNRLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLS 177 Query: 167 ARNIPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 RN+P + IN YD++ +V+S+ A+ L Sbjct: 178 LRNLPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214 >gi|320533935|ref|ZP_08034505.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133855|gb|EFW26233.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 141 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + + VI V Sbjct: 1 GRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFV 60 Query: 131 SKEC-KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + TK + R L AL+I Q D + +L+ RN P ++L +N YD+L+ Sbjct: 61 TTTVPSTKNALVALRNLTDRKALVIVDRQDDLS-RLSLRNAPEAHVLWADQLNTYDVLKS 119 Query: 190 SKLVLSKSAIEAL 202 +V + S ++A Sbjct: 120 DDVVFTASGLDAF 132 >gi|89898719|ref|YP_515829.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56] gi|109893585|sp|Q252V4|RL4_CHLFF RecName: Full=50S ribosomal protein L4 gi|89332091|dbj|BAE81684.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56] Length = 224 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 18/217 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSE 56 M+ LS + G G + + + FA Q+G ++ + KR + ++ RSE Sbjct: 1 MVLLSKFDFFGNKAGEVELPDAFFA---QEGNGLQLVKDYIVAIRANKRQWSACTRNRSE 57 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115 V+++ K + QKGTG AR + QFRGGG FGP P H + KK + A+R LS Sbjct: 58 VSHSTKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLS 117 Query: 116 DKFCSNDIMVIDNLVSKEC----KTKYLVTRFRALDLS--NALIIDG---CQLDRNFQLA 166 K +N ++V D+ V + KTK + ++ ++ L ID Q + +L+ Sbjct: 118 QKIQTNRLIVADDSVFTKSLTAPKTKEALRFLKSCNVECRGVLFIDDLNHAQNNEGLRLS 177 Query: 167 ARNIPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 RN+P + +N YD++ +V+S+ A+ L Sbjct: 178 LRNLPAVRGFAYGMNVNGYDLVSARNIVISEKALTGL 214 >gi|216408826|gb|ACJ73096.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408828|gb|ACJ73097.1| ribosomal protein L4 [Campylobacter coli] gi|216408894|gb|ACJ73130.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ + +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDISEVNAYLVSVFNAVIMEKSALESI 200 >gi|116075766|ref|ZP_01473025.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916] gi|116067081|gb|EAU72836.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916] Length = 211 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 20/217 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V++ G+D G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MANCVVKDWQGKDAGKASLELKVAKETTANDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMAR--- 117 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL-----------AARN 169 V D +V K+ T + R ++++AL G D L + RN Sbjct: 118 ----VEDLVVVKDFGTNLEAPKTR--EITDALGRLGIAADAKVLLVLTNPSEVVRRSVRN 171 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + L+ +NV+D+L + LV+ ++A+ +++ + Sbjct: 172 LEKVKLIAADQLNVFDLLNANNLVVGETALATIQEVY 208 >gi|302853159|ref|XP_002958096.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis] gi|300256564|gb|EFJ40827.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis] Length = 357 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 32/236 (13%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E V ++D + G++ + F + + IL RV+R+ + + G K+K R EV+ G Sbjct: 85 EAVVYSMDEQPLGLVRLPGVAFNVPVRLDILHRVVRYLRAKWQQGTHKAKRRGEVSGGGR 144 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K QK TGRAR S ++GGG + P+P H LP+ VR L +R A++ K Sbjct: 145 KPRPQKKTGRARQGSIRSPLWKGGGVSHAPLPRSHAHKLPRSVRLLGMRCAITAKIHEGR 204 Query: 123 IMVIDNL---------------------------VSKECKTKYLVTRFRALDL-SNALII 154 V+DN V + K + R A S L++ Sbjct: 205 FFVVDNFLRVPGPSGSSSAGSASNSVNALGEQVRVRDYSELKQRLARVTAGSFGSTWLLV 264 Query: 155 DGCQLDRNFQLAARNIPN----INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 D + R+ + R + +L + + VY +L+ +LV++++A+E+L ++ Sbjct: 265 DSGEAGRDGGVQLRKWLKGRMVMEVLAPEQLTVYHVLKYHRLVVTRAALESLAEQL 320 >gi|183221346|ref|YP_001839342.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911439|ref|YP_001962994.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226730680|sp|B0SAF3|RL4_LEPBA RecName: Full=50S ribosomal protein L4 gi|226730681|sp|B0SSH6|RL4_LEPBP RecName: Full=50S ribosomal protein L4 gi|167776115|gb|ABZ94416.1| 50S Ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779768|gb|ABZ98066.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 211 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 6/194 (3%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + ++FA G + ++ ++ R G +K RSEV G K + QKGTGRAR Sbjct: 16 VELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGGIKPWAQKGTGRARQG 75 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S F GGG GP P L + V+ A+ L+ K N I +I+++ T Sbjct: 76 SIRAPHFVGGGIIHGPKPRDYSSNLSRSVKKKAVLSILNKKAEENRIAIIEDVEPSSYST 135 Query: 137 KYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 K + + +D++ ++ G ++ + + RNI N+ + + + DIL + L Sbjct: 136 KSIYNILKNMDIAEKGNVGFVVAGE--NQFLKKSTRNIENLKYVNSKRVVCRDILYNNNL 193 Query: 193 VLSKSAIEALEDRF 206 V+S+SA++ L+ ++ Sbjct: 194 VISESALKELQAQY 207 >gi|47459071|ref|YP_015933.1| 50S ribosomal protein L4 [Mycoplasma mobile 163K] gi|81614326|sp|Q6KI54|RL4_MYCMO RecName: Full=50S ribosomal protein L4 gi|47458400|gb|AAT27722.1| 50S ribosomal protein l4 [Mycoplasma mobile 163K] Length = 293 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 7/199 (3%) Query: 14 KGVISVSEDIFALKPQ----QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 K +S+ + IF L + Q I +L ++ +R G +K RSEV+ G K + QKG Sbjct: 97 KNTVSLPKGIFGLSEEKINTQAIFDSIL-FERASQRQGTHSTKTRSEVSGGGKKPWKQKG 155 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDN 128 TGRAR S + GGG FGP P + KKVR+LA +L+ N I+V D Sbjct: 156 TGRARAGSTRSPIWVGGGITFGPKPQKKYDFKINKKVRNLAFLSSLTLLANKNAILVED- 214 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L ++ ++ L+ + L ++N I D + RN+ N++++ + + V + Sbjct: 215 LKLEKISSQELIKKLEDLKINNLKKILIVSDDEKIFKSGRNVQNLHVVKLNSLTVELLNE 274 Query: 189 CSKLVLSKSAIEALEDRFK 207 L+LSK + LE R K Sbjct: 275 THALLLSKKDLTTLESRVK 293 >gi|182412050|ref|YP_001817116.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1] gi|177839264|gb|ACB73516.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1] Length = 210 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 14/190 (7%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 DKG+ +V E I A+ R G +K R EV G K + QKGTGR Sbjct: 26 DKGLQAVKEVIVAINANN--------------RQGTHSTKTRGEVRGGGKKPWRQKGTGR 71 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR S + GGG FGP P + KV+ LA AL D+ + +I VI+ SK Sbjct: 72 ARAGSIRSPLWGGGGVVFGPKPRDYSKKINAKVKQLAFSRALFDRASAGEIAVIEAFDSK 131 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK + +++ A+RN+ + L +N D+ + K+ Sbjct: 132 ATKTKAFNQILGRIAPKGKVLLVDAPFAAEAARASRNLERVTLQEAAKLNTLDLAQYQKI 191 Query: 193 VLSKSAIEAL 202 ++S A+EA+ Sbjct: 192 IVSSKALEAI 201 >gi|299830599|ref|YP_003735047.1| 50S ribosomal protein L4 [Durinskia baltica] gi|297384963|gb|ADI40262.1| 50S ribosomal protein L4 [Durinskia baltica] Length = 215 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 9 LDGEDKGVISVSEDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 LD K + S +E ++ + G +L + L +R G +K RSEV G K + Sbjct: 12 LDFTGKALDSTAELQLSVLEKSGNYLLHKDLLRHYNSQRQGTVSTKTRSEVRGGGRKPWR 71 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR S ++GGG FGP P + KK R LAL+ L +K N+I+VI Sbjct: 72 QKGTGRARAGSNRSPLWKGGGVIFGPKPKTVSIKVNKKERRLALQTLLYNK--KNNILVI 129 Query: 127 DNLVS--KECKTKYL--VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +NL + + KTK + + +++L ++I + +LA +N+ + L+ +N Sbjct: 130 ENLENGLTDSKTKSFLDICKNCSVNLDQKVLIVVAEKTVPLKLATQNLKTVELILASNLN 189 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 + +L +++L+ A+ +++ + Sbjct: 190 TFSLLNAKQILLTPLALTTIKEIY 213 >gi|284042805|ref|YP_003393145.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684] gi|283947026|gb|ADB49770.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684] Length = 210 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 76/161 (47%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G S +K R V G+K + QKGTGRAR S ++GGG FGP P + +K Sbjct: 40 RQGTSSTKTRGNVRGGGAKPWRQKGTGRARAGSSRSPIWKGGGTVFGPSPRHYTFKVNRK 99 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 R ALR ALS + + V D TK N ++ + N Sbjct: 100 ARRAALRSALSVQADRGSLAVFDATTFDAPSTKTASKLLADWGQPNPTLVLLDADEANAG 159 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 L+ RN+ I +LPV+ V D++ + L++S++A+ + R Sbjct: 160 LSFRNLERILVLPVEDAGVADVIGAASLLISETALAQITAR 200 >gi|146329829|ref|YP_001210150.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A] gi|166234663|sp|A5EX81|RL4_DICNV RecName: Full=50S ribosomal protein L4 gi|146233299|gb|ABQ14277.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A] Length = 202 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 95/188 (50%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ISV++ +F+ + ++ +V+ R G K ++EV+ G K + QKGTGRAR Sbjct: 12 ISVADSVFSAAYNEPLIHQVVVAYLAGARQGTKAQKTKAEVSGGGVKPWKQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +R GGK F P V + +K+ AL S+ + ++ L E KT Sbjct: 72 SIRSPLWRTGGKIFAAKPRSYVQKVNRKMYRSALCSIFSELNRIGRFIAVNALELTEPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + + + L++ + N LA+RN+PN+ ++ VQ IN +L+ K+++ K Sbjct: 132 KSFLKLMQDHAFGDDLLLITESENINIFLASRNLPNVTVIDVQEINPALLLKHEKVIVDK 191 Query: 197 SAIEALED 204 +A+E + + Sbjct: 192 AALEKINE 199 >gi|67541346|ref|XP_664447.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4] gi|40739052|gb|EAA58242.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4] Length = 200 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 8/181 (4%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V + K+Y QKGTGRAR K RGGG Sbjct: 4 RKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGGGV 63 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALD 147 AFGP P LP+K+ A R ALS ++ +++IDN + E T Y + + Sbjct: 64 AFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIGIPEDATPYFIKEIFKFN 123 Query: 148 L------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 + LI D + F+ + +L ++V D+L +L++ K A++ Sbjct: 124 RWGREFGRSTLITDRVH-EELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALDR 182 Query: 202 L 202 + Sbjct: 183 I 183 >gi|332041524|gb|EGI77884.1| 50S ribosomal protein L4 [Hylemonella gracilis ATCC 19624] Length = 206 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 103/209 (49%), Gaps = 8/209 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +F + + ++ +++ R G K R+ V ++ Sbjct: 1 MQLELLNEQGQASSKLEAPDTVFGREYNEALVHQIVVAFQANARQGTRAQKDRATVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-- 119 K + QKGTG AR S +RGGG+ F P +KV R ++ F Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNSP---EENFSQKVNKKMYRAGMASIFSQL 117 Query: 120 --SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + V+++L KTK L +F+A+ L + L+I ++D N LA+RN+ N+ ++ Sbjct: 118 AREGRLAVVESLKVDSPKTKALAAKFKAMKLDSVLVI-ADEVDENLYLASRNLANVLVVE 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + ++ K++++K+A++ L++ + Sbjct: 177 PRYADPLSLVHYRKVLVTKAAVDQLKEMY 205 >gi|57505355|ref|ZP_00371284.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195] gi|57016491|gb|EAL53276.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195] Length = 204 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K RS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKDRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK N + + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAIKNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 200 >gi|118602214|ref|YP_903429.1| 50S ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166199859|sp|A1AVK1|RL4_RUTMC RecName: Full=50S ribosomal protein L4 gi|118567153|gb|ABL01958.1| LSU ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 204 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V N+ I V++ +FA Q ++ +V R G K RS V+ Sbjct: 1 MKFKVLNISTNKSSTIEVADTVFARGFNQALVHQVTTAYMSGGRQGSKAQKNRSTVSGGS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KRPWAQKGTGRARAGTTRGPIWRSGGVTFSAAPRGYAQKVNKKMYKGAISVIFSELARSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ KE KTK + +AL++ + L++ +LD N L++RN+ ++ + +Q I Sbjct: 121 RLKVVSEFNIKEIKTKNITALLKALNVKDVLLMTD-ELDENLYLSSRNLYHVGVCDIQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 + ++ +V+++ A++ +E Sbjct: 180 DPVSLIGYDNVVVTEIALKKIE 201 >gi|196228456|ref|ZP_03127323.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428] gi|196227859|gb|EDY22362.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428] Length = 203 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 82/163 (50%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G + K ++ V +G+K + QKGTGRAR KS + GGG FGP P + K Sbjct: 39 RRSGTASVKTKATVNGSGAKPWRQKGTGRARAGYKSSPVWVGGGVVFGPHPRDYSKKVAK 98 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 V+ LALR ALS++ S D+ ++D KE KTK + ++ D+N Sbjct: 99 SVKKLALRKALSERIKSGDVFIVDEFAIKEPKTKQFAAAIALITEEPKTLVVSAAFDKNT 158 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ARN+ L+ +N +L K+V++ + + DR Sbjct: 159 YLSARNVQPAQLITASEVNTEQLLNFRKIVITNDGLAQIADRL 201 >gi|78211927|ref|YP_380706.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605] gi|109893649|sp|Q3AMN1|RL4_SYNSC RecName: Full=50S ribosomal protein L4 gi|78196386|gb|ABB34151.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605] Length = 211 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 +D+ V+ + + + KT+ + L + S LI+ D + + RN+ + L Sbjct: 119 DDVTVVQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSD-VVRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVL + A+ +++ + Sbjct: 178 ISADQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|216408684|gb|ACJ73025.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + ++L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGALFTANSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESI 200 >gi|299830378|ref|YP_003734593.1| ribosomal protein L4 [Kryptoperidinium foliaceum] gi|297385080|gb|ADI40378.1| ribosomal protein L4 [Kryptoperidinium foliaceum] Length = 215 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 6/167 (3%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G +K RSEV G K + QKGTGRAR S + ++GGG FGP P L K Sbjct: 49 QRQGTLSTKTRSEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVIFGPKPKTISIKLNK 108 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR--ALDLSNALIIDGCQL 159 K R LAL+ L +K N I+V++NL + + KTK + + +++L +++ + Sbjct: 109 KERRLALQTLLYNK--KNSILVVENLENAITDSKTKSFLKICQDCSINLDQPVLVVVNEK 166 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +LA NI +I L+ +N + +L +++++ A+ +++ + Sbjct: 167 TLPLKLATNNIKSIELILASQLNTFSLLNAKQILVTPLALNTIQEVY 213 >gi|256370781|ref|YP_003108606.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri SMDSEM] gi|256009573|gb|ACU52933.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri SMDSEM] Length = 204 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L++ N +G + G + + D K I + R+ S + R G +KSK RSE+ + Sbjct: 1 MKLNILNKNGFETGRFLKIKNDSLKEKKNHIIYLEIKRYFSAQ-RQGTNKSKERSEITGS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + FR GG+ FGP P L K + LA + + K Sbjct: 60 TKKIQRQKGSGNARKGNIKNPLFRSGGRIFGPKPKKFNFKLNKLFKVLAKKLLIYFKIKK 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + ++++ K+ KT + L+L L+I + D+NF +A+RN+ +N++ ++ Sbjct: 120 NKVKILEDFFLKKKKTFLIKKLITTLNLEKKKLLIIINKKDKNFFIASRNLKLLNVISIE 179 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N++ + L+ +S + L Sbjct: 180 ELNIFYLANSDYLIFFESVFKKL 202 >gi|269101056|ref|YP_003289204.1| 50S ribosomal protein L4 [Ectocarpus siliculosus] gi|266631564|emb|CAV31235.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus] gi|270118694|emb|CAT18764.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus] Length = 232 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 5/176 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R Q +R G + R+EV G K + QKGTGRAR S ++GGG +FG Sbjct: 55 ILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFG 114 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-NLVSKECKTKYLVTRFRALDLSN 150 P P ++ L +K LA+R + K S I +ID N S + KT + F+ D+S Sbjct: 115 PKPKTYINKLNRKEWQLAVRGLIILKEPS--ITIIDHNFSSIDNKTNIFINLFKGCDISF 172 Query: 151 ALIIDGC--QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + I ++ N RNI + ++ +N+ +L L +SK +++ +E+ Sbjct: 173 SKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEE 228 >gi|257458707|ref|ZP_05623831.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268] gi|257443896|gb|EEV19015.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268] Length = 204 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPK 103 R + +K R+EV+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTANAKTRAEVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYEQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL A+++K I + D+L K KTK + L + +ALI+ +LD Sbjct: 103 KQKRLALEFAINEKANEGKIFIFDDLELKSGKTKDAANFIKKLGVRDALIVKN-ELDAQT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ +N Y I +V K+A E++ Sbjct: 162 LLAYRNLKNCYVIDASEVNAYLIAVYGSVVFEKAAFESI 200 >gi|71003832|ref|XP_756582.1| hypothetical protein UM00435.1 [Ustilago maydis 521] gi|46096113|gb|EAK81346.1| hypothetical protein UM00435.1 [Ustilago maydis 521] Length = 438 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 55/248 (22%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73 K + +S +F ++ ++ + + +R G + +KGRS+V + K+ QKG+G+A Sbjct: 144 KAYVPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGSMRKLRPQKGSGQA 203 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VS 131 R + S RGG A GP P LP++VR LALR ALS K+ +++V++NL + Sbjct: 204 RLGTMSNPILRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQGNLLVVENLNWTA 263 Query: 132 KECKTKYLVTRFRALDLSNALIIDGC--------------------------------QL 159 T L + S+AL + Q Sbjct: 264 PPSSTGPLARLLGSKGWSDALFLTAPRDPQPSMRSLIKDARPSSSDPIYDEHQKLSHQQA 323 Query: 160 DRNFQLAARNIPNINLLPVQG---------------------INVYDILRCSKLVLSKSA 198 RNF LA+ N+P L+ + ++ Y++LR K++ A Sbjct: 324 IRNFVLASNNLPRAELIELDSLTEEYRDNIAKTSDDKKKPGELHAYEVLRRHKVICDLGA 383 Query: 199 IEALEDRF 206 +E LE++ Sbjct: 384 VEWLEEKL 391 >gi|212529840|ref|XP_002145077.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224] gi|210074475|gb|EEA28562.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224] Length = 298 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 7/189 (3%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 S D + ++ +L R + ++ + R G + +K R +V +G K+ QKGTG AR K Sbjct: 87 SPDHLLVPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGDKK 146 Query: 80 VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 RGGG A GP P LPKK+ A R ALS ++ ++V+DNL E + + Sbjct: 147 SPIRRGGGVAHGPHPRDFSTDLPKKMYDKAWRIALSYRYTRGSLLVVDNLKMPENSSPWF 206 Query: 140 VTRFRALDLSNALIIDGC-----QLDRN-FQLAARNIPNINLLPVQGINVYDILRCSKLV 193 RF ++ + GC ++D + F A + +L ++V DIL+ KL+ Sbjct: 207 WKRFFEVN-AWGKGHGGCTFVKDRMDEDLFGAIAEFQEHGRILDRPDLDVKDILKNGKLI 265 Query: 194 LSKSAIEAL 202 + K A++ + Sbjct: 266 IEKKALDKI 274 >gi|86149254|ref|ZP_01067485.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|218563292|ref|YP_002345072.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|46577294|sp|Q9PLX2|RL4_CAMJE RecName: Full=50S ribosomal protein L4 gi|85840036|gb|EAQ57294.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360999|emb|CAL35800.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|216408594|gb|ACJ72980.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408596|gb|ACJ72981.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408598|gb|ACJ72982.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408600|gb|ACJ72983.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408602|gb|ACJ72984.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408604|gb|ACJ72985.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408606|gb|ACJ72986.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408608|gb|ACJ72987.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408610|gb|ACJ72988.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408612|gb|ACJ72989.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408614|gb|ACJ72990.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408616|gb|ACJ72991.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408618|gb|ACJ72992.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408620|gb|ACJ72993.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408622|gb|ACJ72994.1| ribosomal protein L4 [Campylobacter coli] gi|216408624|gb|ACJ72995.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408626|gb|ACJ72996.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408628|gb|ACJ72997.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408630|gb|ACJ72998.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408632|gb|ACJ72999.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408634|gb|ACJ73000.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408636|gb|ACJ73001.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408638|gb|ACJ73002.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408640|gb|ACJ73003.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408642|gb|ACJ73004.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408644|gb|ACJ73005.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408646|gb|ACJ73006.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408648|gb|ACJ73007.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408650|gb|ACJ73008.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408652|gb|ACJ73009.1| ribosomal protein L4 [Campylobacter jejuni] gi|284926897|gb|ADC29249.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni IA3902] gi|315926633|gb|EFV06013.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 204 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KS +E++ Sbjct: 162 LLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESI 200 >gi|147856052|emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera] Length = 306 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + + + GE G ++ L + ++ R + +R G + + R EV Sbjct: 50 LVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGG 109 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TGRAR S+ GGG FGP P + +K + LA+ A+S + Sbjct: 110 GKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSS--AA 167 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + +V+++ K + KTK ++ + +D + ++ N +L++RNI + +L Sbjct: 168 VNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKML 227 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 + +N++DIL KLVL++ ++ L Sbjct: 228 TPRTLNLFDILNSDKLVLTQETVDYL 253 >gi|268680586|ref|YP_003305017.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946] gi|268618617|gb|ACZ12982.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946] Length = 204 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R + SK + EV+ G K + QKG G AR S+ + GGG AFGP + K Sbjct: 43 RSNTAHSKTKGEVSGGGKKPWAQKGRGGARAGSRRSPVWVGGGAAFGPKANRNYDLKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL++K +N + V+D+L + KTK + + L +ALI+ +D Sbjct: 103 KQKRLALEFALNEKAANNALFVVDSLNIESGKTKDAASIIKTLGTRDALIVKEL-VDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RNI N L+ +N Y +++ KS +E + Sbjct: 162 MLAFRNIQNCYLVDASELNAYLATAFYAVIIEKSVLETI 200 >gi|225434666|ref|XP_002280152.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 290 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + + + GE G ++ L + ++ R + +R G + + R EV Sbjct: 50 LVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGG 109 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TGRAR S+ GGG FGP P + +K + LA+ A+S + Sbjct: 110 GKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSS--AA 167 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + +V+++ K + KTK ++ + +D + ++ N +L++RNI + +L Sbjct: 168 VNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKML 227 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 + +N++DIL KLVL++ ++ L Sbjct: 228 TPRTLNLFDILNSDKLVLTQETVDYL 253 >gi|297843518|ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] gi|297335482|gb|EFH65899.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] Length = 280 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 5/211 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + L + + +GE G + + ++ R + KR G + + R EV Sbjct: 51 LATLPIISFEGEKVGETYLDLKTAPEDTARAVVHRAIVTDLQNKRRGTASTLTRGEVRGG 110 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TG AR S+ GGG FGP P + +K + LA+ ALS + Sbjct: 111 GIKPYAQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAVSA 170 Query: 121 N-DIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +V++ K + KTK + + LD + +D N ++RNI + + Sbjct: 171 EGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRM 230 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L + +N++DIL KLVL+ +A+E L R+ Sbjct: 231 LTPRTLNLFDILNSDKLVLTPAAVEFLNARY 261 >gi|161511519|ref|NP_852834.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)] gi|3914747|sp|O52333|RL4_MYCGA RecName: Full=50S ribosomal protein L4 gi|2766504|gb|AAB95388.1| ribosomal protein L4 [Mycoplasma gallisepticum] gi|284811865|gb|AAP56402.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)] gi|284930295|gb|ADC30234.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(high)] gi|284931062|gb|ADC31000.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. F] Length = 209 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%) Query: 47 GCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKV 105 G + + EV+ G K Y QK TGRAR S + GGG AFGP P + KKV Sbjct: 47 GTHSTLKKGEVSGGGKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPNRNYKIKVNKKV 106 Query: 106 RSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 SLA + A++ K +N+ + ++D++ + TK + + L ++ ++I + + N + Sbjct: 107 SSLAFKSAITSKVNNNEFLGLVDSIKQDKPSTKAIAKLLKELKVNKKVLIVAFEKNENLE 166 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ N+PN++ ++V D++ + ++ KSAI +R Sbjct: 167 KSSANLPNVSYKLWNQVSVKDLIDANCVLAQKSAINNWVERL 208 >gi|254468893|ref|ZP_05082299.1| ribosomal protein L4/L1 family [beta proteobacterium KB13] gi|207087703|gb|EDZ64986.1| ribosomal protein L4/L1 family [beta proteobacterium KB13] Length = 208 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 7/194 (3%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + S+ IFA ++ ++ +++ R+ K R+EV ++ K + QKGTG AR Sbjct: 17 VKASDAIFAADFKESLVHQLVVSYMANARVATRAQKTRAEVKHSTRKPFRQKGTGNARAG 76 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS----NDIMVIDNLVSK 132 S +R GG+AF P KKV A R + F + + V++ Sbjct: 77 MTSSPIWRSGGRAFPNRPD---ENYSKKVNKKAYRTGMKSIFSELVRQDRLTVVEEFKVD 133 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + KTK + ++ N +++ + D N L++RNIP ++ + I+ ++ SK+ Sbjct: 134 KPKTKSFNELIKNFNIENNVLVITNEFDENLYLSSRNIPTALVVEARYIDPVSLVHFSKV 193 Query: 193 VLSKSAIEALEDRF 206 ++++ A++ +E+ F Sbjct: 194 IVTEQALKTIEEMF 207 >gi|149195352|ref|ZP_01872438.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2] gi|149134484|gb|EDM22974.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2] Length = 195 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 4/192 (2%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E K + + ED + P L ++ +R G + +K R EV+ G K + QKG G Sbjct: 4 EIKKINQLPEDFQGINPHN--LYLYVKAYLANQRAGTAHTKTRGEVSGGGKKPFRQKGLG 61 Query: 72 RARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 RAR S F GGG A GP L KK + +AL++AL++K + I V+ + Sbjct: 62 RARQGSIRAPHFVGGGVAHGPRNERDWSQKLNKKQKRVALKYALNEKAENEKIYVVPEVK 121 Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 + KTK V + + LI+ +D LA RNIPN+ ++ + +N Y Sbjct: 122 IESGKTKDAVKWLNNFNERDYLIVVD-NMDEKTYLAFRNIPNVYIITPEELNAYYASVFK 180 Query: 191 KLVLSKSAIEAL 202 ++ ++A + + Sbjct: 181 SIIFDEAAFDKV 192 >gi|260436231|ref|ZP_05790201.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109] gi|260414105|gb|EEX07401.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109] Length = 211 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D+ V+ + + + KT+ + L + S LI+ D + + RN+ + L Sbjct: 119 EDVTVVKDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSD-VVRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVL + A+ +++ + Sbjct: 178 ISADQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|77407531|ref|ZP_00784358.1| ribosomal protein L4 [Streptococcus agalactiae H36B] gi|77173859|gb|EAO76901.1| ribosomal protein L4 [Streptococcus agalactiae H36B] Length = 136 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 67/124 (54%) Query: 80 VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 ++Q+RGGG FGP P + LP+KVR LAL+ S K + + ++ L KT Sbjct: 9 LTQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEXLSFAAPKTAEF 68 Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + AL + + +++ + + L+ARN+PN+ + +V DI+ KL+++K AI Sbjct: 69 ASVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAI 128 Query: 200 EALE 203 +E Sbjct: 129 STIE 132 >gi|259480440|tpe|CBF71574.1| TPA: 50S ribosomal protein L4 (AFU_orthologue; AFUA_5G12800) [Aspergillus nidulans FGSC A4] Length = 287 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V + K+Y QKGTGRAR K RGGG Sbjct: 91 RKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGGGV 150 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFRALD 147 AFGP P LP+K+ A R ALS ++ +++IDN + E T Y + + Sbjct: 151 AFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIGIPEDATPYFIKEIFKFN 210 Query: 148 L------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + LI D + F+ + +L ++V D+L +L++ K A++ Sbjct: 211 RWGREFGRSTLITDRVH-EELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALD 268 >gi|21672769|ref|NP_660836.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009110|sp|Q8K951|RL4_BUCAP RecName: Full=50S ribosomal protein L4 gi|21623416|gb|AAM68047.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 201 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 1/190 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 ++SVSE IF + ++ +V+ S R G K R++V+ +G K + QKGTGRAR Sbjct: 10 SLLSVSEIIFGRDFNEALIHQVVVAYSASTRQGTRAQKSRADVSGSGRKPWRQKGTGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +R GG F P + KK+ AL+ S+ +++ + Sbjct: 70 AGSFRSPIWRSGGVTFASKPQSHSQKINKKMYRGALKSIFSELIRQKRLIIFEKFSLDLP 129 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KT LV + + + L+N LI+ +++ N LA+RN+ ++++ V ++ ++ +++ Sbjct: 130 KTNLLVKKLKEIKLNNVLILTK-EIENNLFLASRNLYSVDVKDVCSMDPVSLIAFEHIII 188 Query: 195 SKSAIEALED 204 + +A++ +E+ Sbjct: 189 TVAALKKVEE 198 >gi|153952215|ref|YP_001398985.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. doylei 269.97] gi|166234651|sp|A7H655|RL4_CAMJD RecName: Full=50S ribosomal protein L4 gi|152939661|gb|ABS44402.1| ribosomal protein L4 [Campylobacter jejuni subsp. doylei 269.97] Length = 204 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LA AL+DK + D+L + KTK + L + + LI+ LD Sbjct: 103 KQKRLAFERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDVLIVKDL-LDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 162 LLAYRNLANCYVVDVAEVNAYLVSVFNAVIMEKSALESI 200 >gi|87124963|ref|ZP_01080810.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917] gi|86167283|gb|EAQ68543.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917] Length = 211 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 12/213 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G+D G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MATCVVRDWQGKDAGKASLDLKVAKESTATDLMHRAVLRQQAHMRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL +F + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARFEA 120 Query: 121 NDIMVIDNL-----VSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNI 173 I V+ + V K + + R S LII + ++ R + RN+ + Sbjct: 121 --ITVVKDFGASLDVPKTREISDALGRLGIAADSKVLIILSNPSEVVRR---SVRNLDKV 175 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+D+L LV+ + A+ +++ + Sbjct: 176 KLIAADQLNVFDLLNAQALVVGEDALATIQEVY 208 >gi|194707774|gb|ACF87971.1| unknown [Zea mays] Length = 314 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 11/210 (5%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + R G + + R EV G Sbjct: 62 LPVLSFTGEKVGEVTL--DLKSAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRGGG 119 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S+ GGG FGP P + +K + LA+ A+ + Sbjct: 120 RKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVS--AAK 177 Query: 122 DIMVIDNL---VSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V++ + KT+ V + LD + D N +L+ RNI ++ +L Sbjct: 178 DAFVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLKML 237 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +A++ L R+ Sbjct: 238 TPRTLNLYDILDARKLFFTPAAVDYLNSRY 267 >gi|226501908|ref|NP_001149608.1| 50S ribosomal protein L4 [Zea mays] gi|195628460|gb|ACG36060.1| 50S ribosomal protein L4 [Zea mays] Length = 314 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 11/210 (5%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V + GE G +++ D+ + P + ++ R + R G + + R EV G Sbjct: 62 LPVLSFTGEKVGEVTL--DLKSAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRGGG 119 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG+AR S+ GGG FGP P + +K + LA+ A+ + Sbjct: 120 RKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVS--AAK 177 Query: 122 DIMVIDNL---VSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 D V++ + KT+ V + LD + D N +L+ RNI ++ +L Sbjct: 178 DAFVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLKML 237 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YDIL KL + +A++ L R+ Sbjct: 238 TPRTLNLYDILDARKLFFTPAAVDYLNSRY 267 >gi|118595334|ref|ZP_01552681.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181] gi|118441112|gb|EAV47739.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181] Length = 208 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 1/188 (0%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 S+DIFA + + ++ +++ R K R+EV ++ K + QKGTG AR S Sbjct: 20 SDDIFASEFNESLIHQLVTSYMSNGRSVTRAQKTRAEVKHSTRKPFRQKGTGNARAGMTS 79 Query: 80 VSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 +RGGG+AF P KK +A++ LS+ + +I+ KTK Sbjct: 80 SPIWRGGGRAFPNRPDENYTQKFNKKAYRVAMKSILSELVRQERLSIIEEFKIDSPKTKQ 139 Query: 139 LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198 V + + L ++ +++ D N L++RN+ N ++ + + ++ SK++ + A Sbjct: 140 FVEKIKTLGITENVLVLIDSFDENLYLSSRNLTNALVVEAKYADPVSLVHFSKVIATTEA 199 Query: 199 IEALEDRF 206 ++ LE+ F Sbjct: 200 VKQLEEMF 207 >gi|206895650|ref|YP_002247333.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM 5265] gi|206738267|gb|ACI17345.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM 5265] Length = 208 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 12/203 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGIL-----ARVLRWQSWRKRIGCSKSKGRSE 56 ++L V +++G + V+E++ A P +G L RVL KR G + +K + E Sbjct: 1 MQLPVFDVNGAEVAYEDVNENLVAT-PVRGRLLHLNVVRVLS----GKRHGTASTKKQGE 55 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 VA + K + QK TGRARH +R G AFGP P + KK LA+ Sbjct: 56 VAGSTRKPWPQKHTGRARHGYMRSPIWRKGAVAFGPKPRDWTKDVNKKQVKLAMASCFGY 115 Query: 117 KFCSNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 + + ++++ID N + + + R + LD ++ ++ + A +N+ N+ Sbjct: 116 RLKNGELLLIDANSFNGKTREFKAFLRSKQLDEKRVTVVS-LAGEQGVRRACQNLENVYY 174 Query: 176 LPVQGINVYDILRCSKLVLSKSA 198 +PV+ +N YD+L+ +++++SA Sbjct: 175 VPVEKVNAYDLLKGDAVIMTQSA 197 >gi|83772865|dbj|BAE62993.1| unnamed protein product [Aspergillus oryzae] Length = 250 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 10/180 (5%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V +G K++ QKGTG+AR K +GGG Sbjct: 54 RKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTGKARVGDKKSPIRKGGGV 113 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTR-FRAL 146 A GP P +LP+K+ A R ALS ++ +++IDN +S E T YL+ F+ Sbjct: 114 AHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDISIPEDATPYLIKEIFKVN 173 Query: 147 DLS-----NALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + + LI D Q + R + + +L + ++V D+L +L++ K A++ Sbjct: 174 NWGREFGRSTLITD--QPNEGLFATVREVGEHAKILDRKDVDVKDLLETGRLIIEKQALD 231 >gi|119174603|ref|XP_001239657.1| hypothetical protein CIMG_09278 [Coccidioides immitis RS] Length = 261 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K RSEV + K+ QKGTGRAR K RGGG Sbjct: 67 RRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRGGGV 126 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFRAL 146 A GP P LP+K+ A R ALS ++ ++++++ +S K+ +L F Sbjct: 127 AHGPHPRDFSTELPQKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIFDTH 186 Query: 147 D----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + +L+I + ++ F+ A +L + ++V D+L +L++ K A++ + Sbjct: 187 NWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMALDRM 246 >gi|161833820|ref|YP_001598016.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS] gi|152206310|gb|ABS30620.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS] Length = 207 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS----NALIIDGCQLDRNFQLAARNIPNINLLP 177 I VI++ KTK + L+ + +LII +++ F ++RN+ N L Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYN-KINDIFFFSSRNLKFTNFLS 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 + +N Y++ LV +SAI+ + Sbjct: 180 INELNSYELANSDYLVFFESAIKKI 204 >gi|315042063|ref|XP_003170408.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893] gi|311345442|gb|EFR04645.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893] Length = 298 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K RGGG A G Sbjct: 107 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKVRPQKGTGRARLGDKKSPMLRGGGVAHG 166 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++VI DN+ + + +L+ T Sbjct: 167 PHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVINDNISLERGSSAHLLHDIIQTHGWG 226 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A L ++V D+L +L++ K A++ + Sbjct: 227 REFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQALDKM 283 >gi|238499961|ref|XP_002381215.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357] gi|317150572|ref|XP_001824126.2| 50S ribosomal protein L4 [Aspergillus oryzae RIB40] gi|220692968|gb|EED49314.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357] Length = 289 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 10/180 (5%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K R +V +G K++ QKGTG+AR K +GGG Sbjct: 93 RKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTGKARVGDKKSPIRKGGGV 152 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTR-FRAL 146 A GP P +LP+K+ A R ALS ++ +++IDN +S E T YL+ F+ Sbjct: 153 AHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDISIPEDATPYLIKEIFKVN 212 Query: 147 DLS-----NALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + + LI D Q + R + + +L + ++V D+L +L++ K A++ Sbjct: 213 NWGREFGRSTLITD--QPNEGLFATVREVGEHAKILDRKDVDVKDLLETGRLIIEKQALD 270 >gi|94502244|ref|ZP_01308730.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451215|gb|EAT14154.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 207 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIIINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS----NALIIDGCQLDRNFQLAARNIPNINLLP 177 I VI++ KTK + L+ + +LII +++ F ++RN+ N L Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYN-KINDIFFFSSRNLKFTNFLS 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 + +N Y++ LV +SAI+ + Sbjct: 180 INELNSYELANSDYLVFFESAIKKI 204 >gi|258567164|ref|XP_002584326.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237905772|gb|EEP80173.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 301 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K RSEV + K+ QKGTGRAR K RGGG A GP P LP+K Sbjct: 123 RQGTASTKWRSEVRGSRKKVRPQKGTGRARLGDKKSPMLRGGGVAHGPHPRDFSTELPRK 182 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFRALD----LSNALIIDGCQ 158 + A R ALS ++ ++++++ +S K+ YL F D +L+I + Sbjct: 183 IYDKAWRTALSYRYRRGQLIIVNDNISMPKDTSVHYLKEIFDRNDWGRKFGRSLLITELK 242 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ F+ + + +L + ++V D+L +L++ K A++ + Sbjct: 243 KEKLFESVEQIGEDARVLDREDVDVKDLLETGRLIVEKMALDRM 286 >gi|328847985|gb|EGF97261.1| hypothetical protein MELLADRAFT_46232 [Melampsora larici-populina 98AG31] gi|328851234|gb|EGG00391.1| hypothetical protein MELLADRAFT_73186 [Melampsora larici-populina 98AG31] Length = 350 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +LS + ++ V +S+ +F + I+ R + ++ R G + +K RSEVA +G Sbjct: 59 FDLSNPDATFDEPSVFPLSKYVFGQPNRPDIIHRCVMFERSLMRSGSANTKTRSEVAMSG 118 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKGTGRAR S R GG AFGP P + +KV L LR LS ++ Sbjct: 119 RKLRPQKGTGRARIGDASSPTLRKGGVAFGPKPKDWSQGIQRKVWELGLRTVLSQRWRDG 178 Query: 122 DIMVID--NLVSKECKTKYLVTRFRALDLSNALIIDG 156 +++++D ++ E ++ L S+A++I G Sbjct: 179 NLILVDRFSMNDTEYGSEQLAELITQKGWSDAMLIAG 215 >gi|296809728|ref|XP_002845202.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480] gi|238842590|gb|EEQ32252.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480] Length = 291 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKG+GRAR K RGGG A G Sbjct: 100 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGSGRARLGDKKSPMLRGGGVAHG 159 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++VI DN+ + T +L+ T Sbjct: 160 PHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVINDNISLERGSTVHLLHDIIQTHGWG 219 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A + L ++V D+L +L++ K A++ + Sbjct: 220 REFGRSSLITEVKKERLFRAVAELGRDARALDRADVDVKDLLETGRLIIEKQALDKM 276 >gi|156086798|ref|XP_001610806.1| 50S ribosomal protein L4 [Babesia bovis T2Bo] gi|154798059|gb|EDO07238.1| 50S ribosomal protein L4, putative [Babesia bovis] Length = 364 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 23/219 (10%) Query: 1 MIELSVRNLDGED-----KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 ++EL + +G++ + V DIF L + IL R + R + G S+ Sbjct: 10 ILELPLYIFEGDNGFPTPRRTHQVPNDIFGLPLRPDILHRCYMFYR-RAKAGYSEDMQLY 68 Query: 56 EVAYTGS--KMYVQKGTGRARHSSKSVSQFRGGGKAFG----PV-PIIGVHALPKKVRSL 108 + + GS K Q+ TG+AR K + GK G P+ P LP++V Sbjct: 69 KWEWPGSTRKWRKQQKTGKARIGWK-----KSPGKYLGVFAHPIRPGDQRTKLPRRVLWT 123 Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALII--DGCQLDRNF 163 L+ LS KF + I ++D+ + K KTKY V R + + ++AL++ + NF Sbjct: 124 GLKIMLSAKFAQSQINLVDSFLMKSHKTKYAVCNLRRILGNNCNSALLVFCGNSDSNENF 183 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + A NIP + L V+G+NVY++L+ +LV+++ A++ L Sbjct: 184 RWATANIPAVRLETVEGLNVYNLLKYRQLVITEMALKKL 222 >gi|303314421|ref|XP_003067219.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106887|gb|EER25074.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037504|gb|EFW19441.1| 50S ribosomal protein L4 [Coccidioides posadasii str. Silveira] Length = 298 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ R G + +K RSEV + K+ QKGTGRAR K RGGG Sbjct: 104 RRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRGGGV 163 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFRAL 146 A GP P LP+K+ A R ALS ++ ++++++ +S K+ +L F Sbjct: 164 AHGPHPRDFSTELPRKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIFDTH 223 Query: 147 D----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + +L+I + ++ F+ A +L + ++V D+L +L++ K A++ + Sbjct: 224 NWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMALDRM 283 >gi|307128706|ref|YP_003880736.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI] gi|306483168|gb|ADM90038.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI] Length = 208 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 1/162 (0%) Query: 42 WRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHAL 101 + +R G +KSK RSE+ + K+ QKG+G AR FR GG+ FGP P L Sbjct: 41 FSQRQGTNKSKERSEITGSTRKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNYNFKL 100 Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-D 160 K ++ ++ ++ K N+I ++++ K KTK + + L+++N I+ + Sbjct: 101 NKNLKRRVIKDIINLKLKKNNIKILEDFDDKIIKTKLVFNLIKKLNINNKKILIIYDIYK 160 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + F L+ +N+ +I +L + +N + + L+ +SAI+ + Sbjct: 161 KKFFLSYKNLKSIKILSINELNSFHLANADYLIFFESAIKKI 202 >gi|223038484|ref|ZP_03608778.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267] gi|222880341|gb|EEF15428.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267] Length = 204 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K R+ V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RSNSAHTKTRAFVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL++K + I +D++ KTK AL+L +AL++ LD N Sbjct: 103 KQKRLALEFALNEKANAGKIFAVDSIEIASGKTKDAAKVISALNLRDALVVKDL-LDDNT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N L+ IN Y + +V+ K+A+E++ Sbjct: 162 LLAFRNLSNCYLIDASEINAYLVATYGAIVIEKAALESI 200 >gi|327292594|ref|XP_003230995.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892] gi|326466801|gb|EGD92254.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892] Length = 298 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K RGGG A G Sbjct: 107 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRGGGVAHG 166 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++V+ DN+ + + +L+ T Sbjct: 167 PHPRDFSTELPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASAHLLHDIFQTHGWG 226 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A L ++V D+L +L++ K A++ + Sbjct: 227 REFGRSSLITEVKKERLFRAVAEIGREARALDRADVDVKDLLETGRLIIEKQALDKM 283 >gi|242762080|ref|XP_002340306.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500] gi|218723502|gb|EED22919.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500] Length = 299 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 7/189 (3%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 S D + ++ +L R + ++ + R G + +K R +V +G K+ QKGTG AR K Sbjct: 88 SPDHLLVPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGDKK 147 Query: 80 VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 RGGG A GP P LP+KV A R ALS ++ ++V+DN+ + + + + Sbjct: 148 SPIRRGGGVAHGPHPRDFSTDLPRKVYDKAWRIALSYRYTRGQLLVVDNIQTPDNSSPWF 207 Query: 140 VTRFRALDLSNALIIDGC-----QLDRN-FQLAARNIPNINLLPVQGINVYDILRCSKLV 193 RF ++L GC ++D + F + + +L ++V DIL+ K++ Sbjct: 208 WKRFFEVNLWGK-NHGGCTFVKDRMDEDLFGAISEFKQHARILDRPDLDVKDILKNGKMI 266 Query: 194 LSKSAIEAL 202 + + A+ + Sbjct: 267 IEQKALNKI 275 >gi|86153018|ref|ZP_01071223.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843903|gb|EAQ61113.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni HB93-13] Length = 190 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 41 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNK 100 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK T + L + +ALI+ LD Sbjct: 101 KQKRLALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKT 159 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 LA RN+ N ++ V +N Y ++ C ++LS Sbjct: 160 LLAYRNLANCYVVDVTEVNAYLVI-CILMLLS 190 >gi|118474924|ref|YP_891245.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. fetus 82-40] gi|226730634|sp|A0RM12|RL4_CAMFF RecName: Full=50S ribosomal protein L4 gi|118414150|gb|ABK82570.1| ribosomal protein L4/L1 family [Campylobacter fetus subsp. fetus 82-40] Length = 204 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANSAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYDQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + +D++ KTK + L + +ALII +LD Sbjct: 103 KQKRLALEFALNDKVANGKFFAVDSIEISSGKTKDAASIINKLGVRDALIIKN-ELDAKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ +N Y + S ++ K+A++++ Sbjct: 162 LLAFRNLANCYVIDASEVNAYLVSVYSAVIAEKAALQSI 200 >gi|312218629|emb|CBX98574.1| similar to 50S ribosomal protein L4 [Leptosphaeria maculans] Length = 613 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 5/179 (2%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R E+ + K+ QKGTG+AR K RG Sbjct: 115 LPTRRDILHRAIVYEGDNTRLGTASTKTRYEIRGSRKKVRPQKGTGKARLGDKKSPMLRG 174 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT---- 141 GG AFGP P LPKKV A R ALS ++ +++++DN + E + L+ Sbjct: 175 GGVAFGPRPRDFGTDLPKKVYDRAWRTALSYRYRKGELIIVDNAMEIESPSSRLLEDIFK 234 Query: 142 -RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + + L +L++ Q Q A L + ++V D+L S++++ + A+ Sbjct: 235 HQQKQLGKGRSLLVTLEQRPLLEQALADMDREEQALTWEEVDVKDLLELSRVMIEREAL 293 >gi|255321772|ref|ZP_05362927.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277] gi|255301252|gb|EET80514.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277] Length = 204 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K R+ V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RSNSAHTKTRAFVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL++K + I +D++ KTK AL+L +AL++ LD N Sbjct: 103 KQKRLALEFALNEKANAGKIFAVDSIEIASGKTKDAAKVISALNLRDALVVKDL-LDDNT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N L+ IN Y + +V+ K+A+E + Sbjct: 162 LLAFRNLSNCYLIDASEINAYLVATYGAVVIEKAALETI 200 >gi|304413146|ref|ZP_07394619.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola LSR1] gi|304283989|gb|EFL92382.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola LSR1] Length = 201 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ +GV++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELAIKDT----QGVLTVSETTFGRVFNEALVHQVVVAYAAVARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + KTK L+ + + + L + LI+ ++ N LA+RN+ +++ V GI Sbjct: 117 RLIVVKEFSVEMPKTKLLLQKLKEMALEDVLIVTK-EIADNLLLASRNLYKVDVCDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTTDAVQQIEE 198 >gi|308190094|ref|YP_003923025.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER] gi|319777390|ref|YP_004137041.1| putative 50S ribosomal protein l4 [Mycoplasma fermentans M64] gi|307624836|gb|ADN69141.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER] gi|318038465|gb|ADV34664.1| Putative 50S ribosomal protein L4 [Mycoplasma fermentans M64] Length = 377 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 5/181 (2%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 +Q I ++ ++ R R G K RSEV+ G K + QKGTGRAR S + GGG+ Sbjct: 200 EQAIFDTIMADRASR-RQGTHDVKNRSEVSGGGKKPWRQKGTGRARAGSTRSPIWVGGGR 258 Query: 89 AFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSN-DIMVIDNLVSKECKTKYLVTRFRAL 146 AFGP P + KKVR A AL+ SN +VID+ + TK V + ++L Sbjct: 259 AFGPTPERNYSLKVNKKVRRAAFLSALT--LLSNKKSVVIDDFKMSKISTKDAVNKLKSL 316 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + N I D + N+ N+ + ++V +++ LVLS ++ E R Sbjct: 317 KIENLKHILVVTTDETVYKSTANLQNVLCVKPNSVSVENLVWADVLVLSNEGLKNFEGRI 376 Query: 207 K 207 K Sbjct: 377 K 377 >gi|302497341|ref|XP_003010671.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371] gi|291174214|gb|EFE30031.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371] Length = 259 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K RGGG A G Sbjct: 68 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRGGGVAHG 127 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++V+ DN+ + + +L+ T Sbjct: 128 PHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIFQTHGWG 187 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A L ++V D+L +L++ K A++ + Sbjct: 188 REFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQALDKM 244 >gi|116327225|ref|YP_796945.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116327265|ref|YP_796985.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332121|ref|YP_801839.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280149|sp|Q04PT9|RL4_LEPBJ RecName: Full=50S ribosomal protein L4 gi|116119969|gb|ABJ78012.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120009|gb|ABJ78052.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125810|gb|ABJ77081.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 211 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 2/164 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K RSEV G K + QKGTG AR S + GGG GP + + K Sbjct: 44 RSGNHATKTRSEVRGGGKKPWSQKGTGHARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSK 103 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNF 163 ++ A+ L+ K ++ + VI++L KE TK + F+ ++L N +I Q + +F Sbjct: 104 LKHKAVLSILNKKAQASAVKVIEDLDPKEYSTKSFDSIFKNMNLRNTGVIGFLVQGESDF 163 Query: 164 -QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + RNIP + + + I+ DIL LV++++A+ + ++ Sbjct: 164 VKKSVRNIPTVKYINSKRISCRDILYNRNLVITEAALNEMLTQY 207 >gi|326472625|gb|EGD96634.1| 50S ribosomal protein L4 [Trichophyton tonsurans CBS 112818] gi|326483564|gb|EGE07574.1| 50S ribosomal protein L4 [Trichophyton equinum CBS 127.97] Length = 298 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K RGGG A G Sbjct: 107 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRGGGVAHG 166 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++V+ DN+ + + +L+ T Sbjct: 167 PHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIFQTHGWG 226 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A L ++V D+L +L++ K A++ + Sbjct: 227 REFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQALDKM 283 >gi|295670599|ref|XP_002795847.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01] gi|226284932|gb|EEH40498.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01] Length = 346 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 6/180 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RGGG Sbjct: 152 RRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRGGGV 211 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR-- 144 A GP P LPKK+ LA R ALS ++ ++++++ ++ ++ +L F Sbjct: 212 AHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVFEKN 271 Query: 145 --ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + +L+I + +R F + +L + ++V D+L ++L++ K A++ + Sbjct: 272 QWGKNFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQALDRM 331 >gi|238810296|dbj|BAH70086.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 378 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 5/181 (2%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 +Q I ++ ++ R R G K RSEV+ G K + QKGTGRAR S + GGG+ Sbjct: 201 EQAIFDTIMADRASR-RQGTHDVKNRSEVSGGGKKPWRQKGTGRARAGSTRSPIWVGGGR 259 Query: 89 AFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSN-DIMVIDNLVSKECKTKYLVTRFRAL 146 AFGP P + KKVR A AL+ SN +VID+ + TK V + ++L Sbjct: 260 AFGPTPERNYSLKVNKKVRRAAFLSALT--LLSNKKSVVIDDFKMSKISTKDAVNKLKSL 317 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + N I D + N+ N+ + ++V +++ LVLS ++ E R Sbjct: 318 KIENLKHILVVTTDETVYKSTANLQNVLCVKPNSVSVENLVWADVLVLSNEGLKNFEGRI 377 Query: 207 K 207 K Sbjct: 378 K 378 >gi|225677501|gb|EEH15785.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb03] Length = 263 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RGGG Sbjct: 69 RRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRGGGV 128 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLVTRFR-- 144 A GP P LPKK+ LA R ALS ++ ++++++ ++ ++ +L F Sbjct: 129 AHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVFEKN 188 Query: 145 --ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L+I + +R F + +L + ++V D+L ++L++ K A++ + Sbjct: 189 QWGKSFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQALDRM 248 >gi|307720137|ref|YP_003891277.1| 50S ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294] gi|306978230|gb|ADN08265.1| LSU ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294] Length = 204 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 2/165 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALP 102 +R + +KGRSEV G K + QKG GRAR S+ F GGGKAFG + Sbjct: 41 QRANTATTKGRSEVRGGGKKPWAQKGGGRARAGSRRSPIFVGGGKAFGSKNNHNYDLKVN 100 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KK + LAL AL++ + + ++D++ + KTK F+AL + L + LD Sbjct: 101 KKQKKLALNFALNEHAQNGTLFIVDSISVESGKTKDAAAMFKALGQRDTLFVKSL-LDEP 159 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 LA N+ ++ +N Y +V+ K+ E L K Sbjct: 160 TFLAFENLHQTYVVESNELNAYLAANYRSIVIEKAVWETLTSEAK 204 >gi|78776488|ref|YP_392803.1| 50S ribosomal protein L4 [Sulfurimonas denitrificans DSM 1251] gi|109893659|sp|Q30TW3|RL4_SULDN RecName: Full=50S ribosomal protein L4 gi|78497028|gb|ABB43568.1| LSU ribosomal protein L4P [Sulfurimonas denitrificans DSM 1251] Length = 204 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R + + R+EV G K + QKG GRAR S+ F GGGKAFGP + K Sbjct: 42 RANSASALTRAEVRGGGKKPWAQKGGGRARAGSRRSPVFVGGGKAFGPKNNRNYDLKVNK 101 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL++ + ++D++ KTK T F+AL+ + L + LD Sbjct: 102 KQKKLALNFALNEHAQKGSLFIVDSIEIASGKTKDAATLFKALNQRDTLFVKTV-LDEKT 160 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA NI + ++ +N Y LV+ K+ E L Sbjct: 161 YLAFENIASTYVIEENELNAYLAANYRSLVIEKAVWENL 199 >gi|24213440|ref|NP_710921.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str. 56601] gi|45658702|ref|YP_002788.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|7674299|sp|Q9XD35|RL4_LEPIN RecName: Full=50S ribosomal protein L4 gi|73917532|sp|Q72NG2|RL4_LEPIC RecName: Full=50S ribosomal protein L4 gi|5163205|gb|AAD40584.1|AF115283_3 ribosomal protein L4 [Leptospira interrogans] gi|24194210|gb|AAN47939.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str. 56601] gi|45601946|gb|AAS71425.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 211 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +K RS V+ G K + QKGTGRAR S + GGG GP + + K Sbjct: 44 RSGNHATKTRSMVSGGGKKPWSQKGTGRARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSK 103 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNF 163 ++ A+ L K ++ + V+++L KE TK + F+ ++L N +I Q + +F Sbjct: 104 LKHRAVLSILGKKAQASAVKVVEDLDPKEYNTKAFDSIFKNMNLKNTGVIGLLVQGENDF 163 Query: 164 -QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + RNIP + + + I+ DIL LV++++A++ + Sbjct: 164 LKKSVRNIPTVKYINSKRISCRDILYNRNLVITEAALKEM 203 >gi|215400771|ref|YP_002327532.1| ribosomal protein L4 [Vaucheria litorea] gi|194441221|gb|ACF70949.1| ribosomal protein L4 [Vaucheria litorea] Length = 220 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 4/177 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R L+ Q +R G S +K R+EV G K + QKGTGRAR S +RGGG FG Sbjct: 43 LLHRALQTQLTNERQGTSNTKTRAEVQGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFG 102 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL--DLS 149 P + + +K L+LR L +K +I +I+ + KTK ++ L D Sbjct: 103 PKIKKFSNKINRKEWRLSLRLLLLNK--QKNITIINTIFLDFFKTKNIIQYILKLGIDPL 160 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+I D N + +N+ N+ LL +N+ DIL+ + + ++++ +E+ + Sbjct: 161 QKLVIIIPNYDENLRRGTKNLKNVQLLKANCLNIKDILKAEHIFIDINSLKIIEETY 217 >gi|116072563|ref|ZP_01469829.1| 50S ribosomal protein L4 [Synechococcus sp. BL107] gi|116064450|gb|EAU70210.1| 50S ribosomal protein L4 [Synechococcus sp. BL107] Length = 211 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKEATAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R ALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 +DI V+ + + + KT+ + L ++ ++I + + RN+ + L+ Sbjct: 119 DDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 179 SANHLNVFDLLHANSLVVGEDALTTIQEVY 208 >gi|12045005|ref|NP_072815.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37] gi|255660300|ref|ZP_05405709.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37] gi|1350753|sp|P47398|RL4_MYCGE RecName: Full=50S ribosomal protein L4 gi|3844746|gb|AAC71370.1| ribosomal protein L4/L1 family [Mycoplasma genitalium G37] gi|166078857|gb|ABY79475.1| ribosomal protein L4/L1 family [synthetic Mycoplasma genitalium JCVI-1.0] Length = 211 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 10/214 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +L V DG KG I + + K Q + +L Q+ R G + + EV+ Sbjct: 1 MAKLKVIQFDGSFKGEIQPANHLLLKKAVIQPVFDAILLEQAAC-RQGTHSTLTKGEVSG 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 G K Y QK TG+AR S + GGG FGP P L KK LAL A + K Sbjct: 60 GGKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPNRNYKLKLNKKAYQLALTSAFAQKL 119 Query: 119 CSNDIMVIDNLVSKE--CKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAARNIPNI 173 +N ++V + + ++ KTK ++T + L+ +ID + + L+ N+ I Sbjct: 120 NNNQVIVAEAKLFEQTNAKTKKMLTFLKNAKLTEQKLLFVID--TISKPLLLSTNNLKQI 177 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++V D+L +++ K+A LE+R K Sbjct: 178 VVKQFNKVSVRDLLLAKTIIIEKAAFTKLEERLK 211 >gi|323454820|gb|EGB10689.1| hypothetical protein AURANDRAFT_59906 [Aureococcus anophagefferens] Length = 243 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 12/212 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E+ V++ DG D G ++S + ++ R + R G + +K R+EV G Sbjct: 34 EVPVKSFDGADAGTATLSLKTTKGEKDMYVVHRKYVNERRNARQGTASTKTRAEVRGGGR 93 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S GGG FGP P + + +K LA+ A+ +K Sbjct: 94 KPFKQKGTGRARQGSTRTPLKPGGGVVFGPKPKDWANKKINRKEAELAIGIAIQNKAAR- 152 Query: 122 DIMVIDNLVSK---ECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNIN 174 V+D+L K KTK + + L D L+ D D + +A N+PN Sbjct: 153 -ATVVDSLAGKFVGAPKTKSVTSMLSGLGLDADEKTVLVYD--TEDDVLEKSAANLPNCE 209 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L I V D+L ++++ +K A + + +R+ Sbjct: 210 LRLQDEITVSDMLWANQVLFTKPAFDWVNERY 241 >gi|319955857|ref|YP_004167120.1| LSU ribosomal protein l4p [Nitratifractor salsuginis DSM 16511] gi|319418261|gb|ADV45371.1| LSU ribosomal protein L4P [Nitratifractor salsuginis DSM 16511] Length = 197 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R +++K RS V+ G K + QKG GRAR S FRGGG FGP + K Sbjct: 36 RANTAQTKNRSAVSGGGKKPFAQKGGGRARQGSIRAPHFRGGGVVFGPTTDRNYTQKVNK 95 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKT---KYLVTRFRALDLSNALIIDGCQLD 160 K + LAL HAL++K + + V+D++ + KT K V F DL L++ + Sbjct: 96 KQKRLALMHALAEKAANEKLFVVDSVAIESGKTKDAKAFVDGFGQRDL---LVVKEMIDE 152 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + F LA RN+ L+ +N Y +V+ K+ + L Sbjct: 153 KTF-LAFRNLQESYLIEENELNGYLAAAYHAIVMEKAVWDKL 193 >gi|255569265|ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis] gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4, putative [Ricinus communis] Length = 283 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L + + GE G + + ++ R + KR G + + R+EV G K Sbjct: 54 LPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGKK 113 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S GGG FGP P + KK + LA+ AL + + Sbjct: 114 PYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTALCS--ATESM 171 Query: 124 MVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++ K + KTK + + LD ++ + + L++RNI + +L + Sbjct: 172 LCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIGTLRMLTPR 231 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++DIL KLVL+ A++ L R+ Sbjct: 232 TLNLFDILNSDKLVLTPDAVDYLNGRY 258 >gi|293602634|ref|ZP_06685077.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553] gi|292819006|gb|EFF78044.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553] Length = 206 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 121 DRIAVVESFDLESPKTKAAAAKLKSLGLDSVLIITDS-VDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEE 203 >gi|78185523|ref|YP_377957.1| 50S ribosomal protein L4 [Synechococcus sp. CC9902] gi|109893648|sp|Q3AUW2|RL4_SYNS9 RecName: Full=50S ribosomal protein L4 gi|78169817|gb|ABB26914.1| LSU ribosomal protein L4P [Synechococcus sp. CC9902] Length = 211 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R ALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI-- 118 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 +DI V+ + + + KT+ + L ++ ++I + + RN+ + L+ Sbjct: 119 DDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 179 SANHLNVFDLLHANSLVVGEDALTTIQEVY 208 >gi|153872676|ref|ZP_02001497.1| ribosomal protein L4/L1e [Beggiatoa sp. PS] gi|152070857|gb|EDN68502.1| ribosomal protein L4/L1e [Beggiatoa sp. PS] Length = 218 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 24/223 (10%) Query: 2 IELSVRNLDGEDKG---VISVSEDIFAL---KP--QQGILARVLRWQSWRKRIGCSKSKG 53 +EL++ NL E G VISVS+ +F +P Q + A +L +K + K Sbjct: 1 MELTLTNLPDETSGLGSVISVSDRVFTAPFNEPLIHQAVTAYLLGSYQSQKSV-----KN 55 Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 R++V + +K + QKGTGRAR S +RGGG F P L +K+ ALR Sbjct: 56 RAQVRGSTAKPWRQKGTGRARAGSVKSPLWRGGGVTFAH-PSSHAVKLNRKMYQGALRSI 114 Query: 114 LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAAR---- 168 LS+ ++V + + KT L AL+L LI+ +G N ++A Sbjct: 115 LSELIRQERLLVTERFFLEAPKTSVLKKTLNALNLDKVLIVLEGRTSSVNGEIAPEVMAV 174 Query: 169 -----NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N+P + +L I+ ++R K++ + +A++ LE+R Sbjct: 175 FRASDNLPKVLVLEASKIDPVSLVRFDKVIFTTAALKQLEERL 217 >gi|322695303|gb|EFY87113.1| 60S ribosomal protein L4 precursor [Metarhizium acridum CQMa 102] Length = 342 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL + ++ R G + SK R EV + K+ QKG+GRAR +K RGGGK FG Sbjct: 119 ILHHAITFEGDNTRQGTASSKTRHEVHGSHRKVRPQKGSGRARLGTKQSPVLRGGGKTFG 178 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN------------LVSKECK---- 135 P P L +KV A R ALS ++ ++++ ++ L K K Sbjct: 179 PKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKYMKDGLR 238 Query: 136 ----TKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDI 186 KY+ R L L A L I G +R ++ A +P L V+ ++V D+ Sbjct: 239 ETYLQKYMTGVLRTLGLGRADGRTLFITGDPRERLYE-AMEQVPWEGQALDVEDVDVKDL 297 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 L K+V+ +S ++ + +R + Sbjct: 298 LETGKVVMERSVLKEMIERHQ 318 >gi|159477929|ref|XP_001697061.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii] gi|158274973|gb|EDP00753.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii] Length = 124 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 65/124 (52%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 + +LD G+ + F + + IL RV+R+ + + G K+K R+EV+ G K + Sbjct: 1 IYSLDERPLGLAPLPGAAFNVPVRIDILHRVVRYWRAKWQQGTHKAKSRAEVSGGGKKPW 60 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QK TGRAR S ++GGG + P P HALP+ R L +R ALS K V Sbjct: 61 NQKKTGRARQGSIRSPLWKGGGVSHAPRPRSHAHALPRSTRLLGMRCALSAKINEGRFFV 120 Query: 126 IDNL 129 +D+L Sbjct: 121 VDDL 124 >gi|253795617|ref|YP_003038713.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia cicadicola Dsem] gi|253739925|gb|ACT34260.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia cicadicola Dsem] Length = 187 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 11/136 (8%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 +P+ +++ RW + ++R ++ K R++V+ + K++ QKGTG ARHS+++V QFRG Sbjct: 13 FEPRLDVVSAAWRWYTNKRRWHVAQIKTRADVSCSRRKLFKQKGTGGARHSTRAVCQFRG 72 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE----------CK 135 GGK F + L K+V++LALR AL+ K + ++ ++ L + + C Sbjct: 73 GGK-FCARRTLLTPKLNKRVKTLALRSALALKLAAGELKFVEGLAAAKLTPSSFLVHACP 131 Query: 136 TKYLVTRFRALDLSNA 151 V RA ++NA Sbjct: 132 RSAAVVGLRAAGVANA 147 >gi|124026707|ref|YP_001015822.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A] gi|123961775|gb|ABM76558.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A] Length = 212 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S+ +L R + Q R G + + RSEV Sbjct: 2 MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 61 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 62 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIS- 120 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPN--- 172 D +I + SK KT +V + + + + LII L++ ++ R+I N Sbjct: 121 -DAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILII----LNKPSEIIKRSIKNLEK 175 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+ +NV+D+L + LV+ + A+ +++ + Sbjct: 176 VKLISADQLNVFDLLNANSLVIGEDALSTIKEVY 209 >gi|29839862|ref|NP_828968.1| 50S ribosomal protein L4 [Chlamydophila caviae GPIC] gi|46577224|sp|Q824Q0|RL4_CHLCV RecName: Full=50S ribosomal protein L4 gi|29834209|gb|AAP04846.1| ribosomal protein L4 [Chlamydophila caviae GPIC] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 18/217 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSE 56 M+ LS + G G + + + F Q+G ++ L KR + ++ RSE Sbjct: 1 MVLLSKFDFSGNKAGEVELPDAFFV---QEGNGLQLVKDYLVAIRANKRQWSACTRNRSE 57 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115 V+++ K + QKGTG AR + QFRGGG FGP P H + +K + A+R LS Sbjct: 58 VSHSTKKPFKQKGTGNARQGCLASPQFRGGGVVFGPKPKFDQHVRINRKEKRAAIRLLLS 117 Query: 116 DKFCSNDIMVIDNLVSKEC----KTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLA 166 K +N ++V D+ V KTK + ++ ++ I +D Q + +L+ Sbjct: 118 QKIQTNRLIVADDSVFTSSLASPKTKEALRFLKSCNVECRGILFIDDLDHAQNNEGLRLS 177 Query: 167 ARNIPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 RN+ + IN YD+ +V+S+ A++ L Sbjct: 178 LRNLSAVRGFTYGMNINGYDLASARNVVISEKALKGL 214 >gi|289209328|ref|YP_003461394.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix] gi|288944959|gb|ADC72658.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix] Length = 201 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 1/161 (0%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 +R G K RS+V+ G+K + QKGTGRAR + + GGGK F L K Sbjct: 39 QRQGTRAQKTRSDVSGGGAKPFRQKGTGRARAGTIRSPLWTGGGKVFAARTRDFSQKLNK 98 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K+ A+ LS+ + V+ + KT+ V + + L L+ L++ + D Sbjct: 99 KMYRAAMASILSELVRQERLKVVADFAVASGKTRDGVAKLKELGLAKGLVVL-AEADDMT 157 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 A N+P+I+++ V GIN +++ +V++++AI +E+ Sbjct: 158 ARALGNVPHIDVVDVAGINPANLVGAETVVMTEAAIRKVEE 198 >gi|315320565|ref|YP_004072622.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005] gi|283569038|gb|ADB27575.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005] Length = 214 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 17/185 (9%) Query: 36 VLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI 95 +LR Q +K+ G +K RSEV G K + QKGTGRAR S +RGGG FGP P Sbjct: 31 ILRQQISQKQ-GTVSTKTRSEVRGGGKKPWQQKGTGRARAGSSRSPLWRGGGVIFGPKPR 89 Query: 96 IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VSKEC-----KTKYLVTRFRA--- 145 + V L KK R LA++ L +K +I+V L + KE KTK + + Sbjct: 90 MTVLKLNKKERKLAVQTLLYNK--RKNILVSAKLEELGKELEFTDNKTKKFYSFCKKELN 147 Query: 146 LDLSNALII----DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 +DL+ ++ + F LA RN+ N+ ++ +N +L+ +++++ A+ Sbjct: 148 IDLNKTKLLLVSESSGSASKTFWLATRNLKNVEVISSANLNTLSLLKAERILITPIALNN 207 Query: 202 LEDRF 206 +++ + Sbjct: 208 IKEIY 212 >gi|237753022|ref|ZP_04583502.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430] gi|229375289|gb|EEO25380.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430] Length = 204 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Query: 41 SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH- 99 S R +K++GR V+ G K + QKG GRAR S + F GGG A GP + Sbjct: 41 SMRANNAIAKTRGR--VSGGGKKPWNQKGGGRARAGSITSPVFVGGGVAHGPSNNKNYNL 98 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 + KK + LAL++AL +K + + ++D + + KTK F+AL+ N L + Sbjct: 99 KVNKKQKRLALQYALMEKANNGSLFIVDKIQVESGKTKDAYMMFKALNQRNTLFVSELFD 158 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ F LA RNI + L+ +N Y + +V+ KS E++ Sbjct: 159 EKTF-LAFRNIKDCYLIDGVELNAYLVATFRSVVIEKSLFESI 200 >gi|72382966|ref|YP_292321.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL2A] gi|109893619|sp|Q46IR0|RL4_PROMT RecName: Full=50S ribosomal protein L4 gi|72002816|gb|AAZ58618.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. NATL2A] Length = 211 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 14/214 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S+ +L R + Q R G + + RSEV Sbjct: 1 MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIP- 119 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPN--- 172 D +I + SK KT +V + + + + LII L++ ++ R+I N Sbjct: 120 -DAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILII----LNKPSEIIKRSIKNLEK 174 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+ +NV+D+L + LV+ + A+ +++ + Sbjct: 175 VKLISADQLNVFDLLNANSLVIGEDALSTIKEVY 208 >gi|293363474|ref|ZP_06610230.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris A21JP2] gi|292552823|gb|EFF41577.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris A21JP2] Length = 288 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 15/193 (7%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 SE I+ +Q I +L ++ R R G + K R++V+ TG K + QKGTGRAR S Sbjct: 106 SEKIY----EQAIFDTILSDRASR-RQGTHQVKNRAQVSGTGKKPWRQKGTGRARTGSLR 160 Query: 80 VSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMV-IDNLVSKECKTK 137 F GGG+AFGP + KKVR A AL+ +ND V ID+L + TK Sbjct: 161 TPVFVGGGRAFGPQSERNYSLKVNKKVRFAAFVSALT--LLANDKAVAIDDLKLSKISTK 218 Query: 138 YLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 LV + L D+ + L++ +L F+ AA N+ N+ + ++V ++ +V+ Sbjct: 219 DLVAKLTKLKLNDVRHVLVVTEDEL--VFKSAA-NLANVVTVKPNSLSVELLVSADVMVI 275 Query: 195 SKSAIEALEDRFK 207 S++ ++ LE + K Sbjct: 276 SQAGLKVLEGKAK 288 >gi|315453734|ref|YP_004074004.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179] gi|315132786|emb|CBY83414.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179] Length = 202 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 2/167 (1%) Query: 37 LRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII 96 +++ + R +++K R V+ G K + QKG GRAR S + F GGG + G Sbjct: 34 VKYYRAQARANSAQTKNRGAVSGGGKKPWNQKGGGRARAGSITSPIFVGGGVSHGATNER 93 Query: 97 GVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155 + KK + LAL +AL K + ++++D + KTK + + L++ Sbjct: 94 NYDLKINKKQKKLALEYALGQKALAEKLLIVDKVDISSKKTKDAHAFLQKFGFRDVLLVT 153 Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + NF LA RN+PN L+ +N Y + + +V+ KSA +A Sbjct: 154 HALEEYNF-LAFRNLPNCYLIEASELNAYLVATYNAVVIEKSAFDAF 199 >gi|34558026|ref|NP_907841.1| 50S ribosomal protein L4 [Wolinella succinogenes DSM 1740] gi|46577164|sp|Q7M8D5|RL4_WOLSU RecName: Full=50S ribosomal protein L4 gi|34483744|emb|CAE10741.1| 50S RIBOSOMAL PROTEIN L4 [Wolinella succinogenes] Length = 204 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +K+K R EV+ G K + QKG GRAR S + F GGG + GP + K Sbjct: 43 RANSAKAKKRGEVSGGGKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL++AL +K + V+D+L KTK F+ L+ + L + ++ F Sbjct: 103 KQKKLALQYALMEKAEQGKLYVVDSLQVDSGKTKDAYAMFKTLNERSTLFVSQISDEKTF 162 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 LA RN+ L +N Y + +V+ KS E Sbjct: 163 -LAFRNLKECYLADANELNAYLVAAFRSVVIEKSLFE 198 >gi|317014709|gb|ADU82145.1| 50S ribosomal protein L4 [Helicobacter pylori Gambia94/24] Length = 215 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 13/172 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNERNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ +AL + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDALFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE-ALEDR 205 C +D +LA N+ ++ V +N Y + S +V+ ++A + A++D+ Sbjct: 162 -CMNMDEYTELAFSNLKKCLVIDVSELNAYLLAAFSSVVMEEAAFQHAVQDK 212 >gi|331215175|ref|XP_003320268.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309299258|gb|EFP75849.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 339 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 V +S +F + I+ R + ++ R G + +K RSEVA +G K+ QKG+GRAR Sbjct: 57 VYPLSSFVFGQPFRSDIIHRCVNFERSLMRSGSANTKTRSEVAMSGRKLRPQKGSGRARL 116 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID--NLVSKE 133 S R GG AFGP P + +KV L LR LS ++ ++V+D + +E Sbjct: 117 GDASSPTLRKGGAAFGPKPKDWAQGIQRKVWELGLRTILSQRWREGRLIVVDKFEMDGQE 176 Query: 134 CKTKYLVTRFRALDLSNALIIDG 156 ++ L S+A++I G Sbjct: 177 EASEQLARLMNQRAWSSAVMIAG 199 >gi|154310648|ref|XP_001554655.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10] gi|150851338|gb|EDN26531.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10] Length = 211 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R + ++ R G + SK R +V + K+ QKGTG AR + GGGK+FG Sbjct: 22 LLHRAVVFEGDNTRQGTASSKTRFDVHGSHRKIRPQKGTGGARLGWRQSPLIVGGGKSFG 81 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLVTRFRALDLSN 150 P P LP+K+ +A R ALS ++ ++V D + + KT+Y F L Sbjct: 82 PHPRDFGTDLPRKMYDIAWRTALSWRYRKGQLIVCEDGMEFEHPKTRYAKRVFEHLGWGK 141 Query: 151 ----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LI+ G + ++N + +L V ++V D+L S++V+ KSA++ + Sbjct: 142 NNGRTLIVTGGFRKNLSSVVSKN--DATVLDVNEVDVKDLLELSRVVIEKSALDQM 195 >gi|302662647|ref|XP_003022975.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517] gi|291186950|gb|EFE42357.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517] Length = 259 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 6/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R + ++ + R G + +K R +V +G K+ QKGTGRAR K R GG A G Sbjct: 68 ILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLREGGVAHG 127 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLV-----TRFRA 145 P P LP+K+ A R ALS ++ ++V+ DN+ + + +L+ T Sbjct: 128 PHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIFQTHGWG 187 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +I + +R F+ A L ++V D+L +L++ K A++ + Sbjct: 188 REFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKKALDKM 244 >gi|319760330|ref|YP_004124268.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF] gi|318039044|gb|ADV33594.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF] Length = 213 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 1/189 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++ VSE IF ++ +V+ R G K R+EV+ + K + QKGTGRAR Sbjct: 21 MLPVSEKIFKYPFNMSLIHQVVSSYLINSRQGSRSQKSRAEVSGSNKKPWRQKGTGRARS 80 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +R GG F P + KK+ A++ LS N +++I+NL ++ K Sbjct: 81 GSLKSPIWRSGGVTFAAKPKKYNQKINKKMYKGAIKSILSKLVSENRLLLIENLFLEKPK 140 Query: 136 TKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK + + L L+ +++ ++ N LA RN+ + + + ++ +++ ++ Sbjct: 141 TKLFLEKLNCLIALNKSMLFITDMIESNVLLATRNLYKVEVRDLYHMDPVSLVKFDIVIF 200 Query: 195 SKSAIEALE 203 +K + +E Sbjct: 201 TKKVLNKIE 209 >gi|11465423|ref|NP_045186.1| ribosomal protein L4 [Cyanidium caldarium] gi|46396662|sp|Q9TLT3|RK4_CYACA RecName: Full=50S ribosomal protein L4, chloroplastic gi|6466326|gb|AAF12908.1|AF022186_30 unknown [Cyanidium caldarium] Length = 219 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ RV Q+ R + +K +S+V G K + QKGTGRAR S +RGGG FG Sbjct: 40 VVHRVFSIQNKLSREHTASTKTKSQVRGGGKKPWKQKGTGRARAGSIRSPLWRGGGVVFG 99 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV----IDNLVSKECKTKYLVTRFRALD 147 P P + KK LAL LS+ ++ + N +S + K+L R + Sbjct: 100 PKPKNVFFKINKKEIRLALYTVLSNALPKTTVVSSLEGLPNFISTQALIKFL--RSLNVS 157 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L N ++I + + L+ RNI N+ L+ +NV ++ LV++ A++ + F Sbjct: 158 LDNRVLIVVEKKETPLFLSCRNIKNLALIQADHLNVKSVILAQSLVVTLQALKIIYKTF 216 >gi|11467718|ref|NP_050770.1| ribosomal protein L4 [Guillardia theta] gi|3914661|sp|O46895|RK4_GUITH RecName: Full=50S ribosomal protein L4, chloroplastic gi|3603043|gb|AAC35704.1| ribosomal protein L4 [Guillardia theta] Length = 223 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 18/191 (9%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 K + +L RVL Q R G + +K RSEV G K + QKGTG AR S + ++GG Sbjct: 37 KKSRYLLHRVLTNQLINNRSGNACTKTRSEVEGGGKKPWKQKGTGNARAGSSNSPLWKGG 96 Query: 87 GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL 146 G FGP P + KK R LAL AL K + ++ +DNL KT+ LV + L Sbjct: 97 GVTFGPKPRTFSNKTNKKERLLALTTALYLKSNNTKVINLDNLDFTNLKTRDLVIKCSNL 156 Query: 147 DLSNALIIDGCQLDRNFQLAA-----------RNIPNINLLPVQGINVYDILRCSKLVLS 195 I+ + D+ A +NI N++L+ G+++ IL+ ++ + Sbjct: 157 -------IENYKKDQKILFVAEPTASGLWRYVKNISNVDLIYTTGLDLKKILQAHHIIFT 209 Query: 196 KSAIEALEDRF 206 A+ +++ F Sbjct: 210 CKALNDVKEVF 220 >gi|224417886|ref|ZP_03655892.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|253827225|ref|ZP_04870110.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|313141428|ref|ZP_07803621.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491] gi|253510631|gb|EES89290.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|313130459|gb|EFR48076.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491] Length = 204 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 41 SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH- 99 S R +K++GR V+ G K ++QKG GRAR S + F GGG + GP + Sbjct: 41 SMRANNAMAKTRGR--VSGGGKKPWIQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNL 98 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 + KK + LAL++AL +K + + V+D + KTK F+ L+ N L++ Sbjct: 99 KVNKKQKKLALQYALQEKADNGSLFVVDKIQIPSGKTKDANAMFKTLNQRNVLLVSEM-F 157 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 D LA RN+ N L+ +N Y +V+ K+ EA+ Sbjct: 158 DEKTYLAFRNLKNCYLIDGAELNAYLAATFRSVVIEKALFEAI 200 >gi|317401538|gb|EFV82167.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans C54] Length = 205 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K RSEV ++ Sbjct: 1 MDLKLLNDQGQ-AATFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRSEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVESFDLESPKTKAAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLVHYKKVLITKPAIAQLEE 202 >gi|291277267|ref|YP_003517039.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198] gi|290964461|emb|CBG40311.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198] Length = 205 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +K+K R EV+ G K + QKG GRAR S + F GGG + GP H + K Sbjct: 43 RNNSAKAKNRGEVSGGGKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYHLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL K + V+D++ KTK F+ ++ + L + + F Sbjct: 103 KQKRLALEFALHQKAEMGKLYVVDSIEIASGKTKDAYKMFQEINERSTLFVTQLSNENTF 162 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N L +N Y + +V+ K+ E + Sbjct: 163 -LAFRNLKNCYLADANELNAYLVAAFRSVVIEKTVFEEI 200 >gi|34764037|ref|ZP_00144923.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886201|gb|EAA23491.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 127 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 85 GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GGG FGP P + KKVR+LALR ALS K + +++V+D + KTK +V Sbjct: 3 GGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVLDYDGIETPKTKVIVNLVN 62 Query: 145 ALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +D ++ D N L+ARN+ N +L I VY +L+ K++L+K A+ + Sbjct: 63 KVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNEIGVYWLLKQEKVILTKEALAVV 122 Query: 203 ED 204 E+ Sbjct: 123 EE 124 >gi|46130896|ref|XP_389179.1| hypothetical protein FG09003.1 [Gibberella zeae PH-1] Length = 322 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 28/214 (13%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 S D L ++ +L + ++ R G + +K R +V + KM QKGTGRAR +K Sbjct: 85 SVDHLYLPLRRDLLHLAVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQ 144 Query: 80 VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 RGGGK FGP P G H L +KV A R ALS ++ D++V ++ + T Y Sbjct: 145 SPILRGGGKTFGPHPRDFGTH-LNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDY 203 Query: 139 ---------------LVTRFRALDLSN---------ALIIDGCQLDRNFQLAARNIP-NI 173 + R+ +SN L + G + + F A IP + Sbjct: 204 EMVAGKYLKDGLKEAYLKRYMTGVMSNLGLGRAAGRTLFVTGDRREALFD-AMEQIPWDG 262 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L ++ ++V D+L K+VL +S ++ L ++ + Sbjct: 263 RALGIEDVDVKDLLETGKVVLERSVLKELIEKHQ 296 >gi|296420041|ref|XP_002839589.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635772|emb|CAZ83780.1| unnamed protein product [Tuber melanosporum] Length = 285 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 23/197 (11%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 S L ++ IL R + ++ R G + +K R +V +G K+ QKG+GRAR Sbjct: 91 SFPTTFLHLPTRRDILHRAITYEGDAARSGNANTKWRGDVHGSGRKIRPQKGSGRARLGD 150 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 K RGGG A GP P LPKK+ +LA R A S ++ ++V+++ + + Sbjct: 151 KKSPMLRGGGVAHGPKPRDFSTDLPKKMYNLAWRTAFSYRYRRGQLIVVEDALEIQANDP 210 Query: 138 YLVTRFRALDLSNALIID---GCQLDRNFQLAARNIPNIN-----------LLPVQGINV 183 L+N++I G + R+ + PN +L + ++V Sbjct: 211 ---------GLANSIIKKNGWGNENSRSLFIVNEERPNFMGAMEGLGSEGLVLTKEEVDV 261 Query: 184 YDILRCSKLVLSKSAIE 200 D+L ++V+ + A+E Sbjct: 262 KDLLEMGRIVIEREALE 278 >gi|156058474|ref|XP_001595160.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980] gi|154701036|gb|EDO00775.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980 UF-70] Length = 211 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R + ++ R G + SK R +V + K+ QKGTG AR K GGGK+FG Sbjct: 22 LLHRAVIFEGDNTRQGTASSKTRWDVHGSHRKVRPQKGTGSARLGWKQSPLIVGGGKSFG 81 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLVTRFRALDLSN 150 P P LP+K+ +A R ALS ++ ++V D + + KT+Y F L Sbjct: 82 PHPRDFGTDLPRKMYDIAWRTALSWRYRRGQLIVCEDGMTFEYPKTRYAKKVFEDLGWGK 141 Query: 151 A-----LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ DG + +N + + + +L V ++V D+L S++V+ KSA++ + Sbjct: 142 QNGRTLIVTDGFR--KNLS-SVVDKHDATVLEVSDVDVKDLLELSRVVIEKSALDHI 195 >gi|210135475|ref|YP_002301914.1| 50S ribosomal protein L4 [Helicobacter pylori P12] gi|226730672|sp|B6JNF6|RL4_HELP2 RecName: Full=50S ribosomal protein L4 gi|210133443|gb|ACJ08434.1| 50S ribosomal protein L4 [Helicobacter pylori P12] Length = 215 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 13/172 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE-ALEDR 205 C +D +LA N+ ++ V +N Y + S +V+ ++A + A++D+ Sbjct: 162 -CMNMDEYTELAFNNLKKCLVIDVSELNAYLLAAFSSVVMEEAAFQHAVQDK 212 >gi|325996594|gb|ADZ51999.1| 50S ribosomal protein L4 [Helicobacter pylori 2018] gi|325998184|gb|ADZ50392.1| 50S ribosomal protein L4 [Helicobacter pylori 2017] Length = 215 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 13/172 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE-ALEDR 205 C +D +LA N+ ++ V +N Y + S +V+ ++A + A++D+ Sbjct: 162 -CMNMDEYTELAFSNLKKCLVIDVSELNAYLLAAFSSVVMEEAAFQHAVQDK 212 >gi|255020766|ref|ZP_05292824.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC 51756] gi|254969762|gb|EET27266.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC 51756] Length = 205 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +++ +FA+ + +L +V+ Q R G + K RS V G K + QKG+GRAR Sbjct: 16 VELADAVFAVPYNEALLHQVVVAQLAGLRSGTAAQKNRSAVRGGGRKPWKQKGSGRARAG 75 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN--DIMVIDNLVSKEC 134 S +RGGG+AF V + KK+ + A+R AL++ I+V+++ Sbjct: 76 SIRSPLWRGGGRAFPGVTQNYAQKVNKKMWAGAMRTALAELLRQGRLQIVVVEDFAEPRA 135 Query: 135 K-TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 + + + + DL L++D ++ N LA RN P + + Q I D+LR +++ Sbjct: 136 RLARDWLQKVGGSDL--LLVMD--EVPENLFLALRNFPQVGIAGWQDIGPADLLRYGRVL 191 Query: 194 LSKSA 198 + A Sbjct: 192 MDAQA 196 >gi|154174036|ref|YP_001409152.1| 50S ribosomal protein L4 [Campylobacter curvus 525.92] gi|226730633|sp|A7H110|RL4_CAMC5 RecName: Full=50S ribosomal protein L4 gi|112802266|gb|EAT99610.1| ribosomal protein L4/L1 family [Campylobacter curvus 525.92] Length = 204 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K R+ V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKSRAYVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+ K + + +D+L + KTK AL+L +ALI+ LD Sbjct: 103 KQKRLALECALAQKAEAGKLFAVDSLAVESGKTKDAAKIIEALNLRDALIVKDL-LDDKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ +N Y + S +++ K+ ++ + Sbjct: 162 LLAFRNMANCYVVDASEVNAYLVSVFSSVIVEKAVLQTI 200 >gi|319942174|ref|ZP_08016490.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B] gi|319804227|gb|EFW01119.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B] Length = 206 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V N G+ + ++ +F + + ++ +++ R+G R +V ++ Sbjct: 1 MELNVLNEQGK---TVEAADAVFGREYNEALVHQIVVAFQANARLGTRAQLNRRDVHHST 57 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P L KK+ + S Sbjct: 58 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNTPDENFSQKLNKKMFRAGMASIYSKLVAD 117 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 +V++ + + KTK ++ + L L+ +I+D +LD N LA+RN+ ++ ++ Sbjct: 118 ARFVVVETIKADLPKTKAFASQLKTLGLTARTLIIVDESELDDNLILASRNLKDVLVVTP 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALED 204 + + ++ K+V +K+A+ +++ Sbjct: 178 RFADPLCLIYFDKVVATKAAVAQIQE 203 >gi|261838637|gb|ACX98403.1| ribosomal protein L4 [Helicobacter pylori 51] Length = 215 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKSRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y ++ S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLVAFSSVVMEEAAFQ 206 >gi|322712679|gb|EFZ04252.1| 60S ribosomal protein L4 [Metarhizium anisopliae ARSEF 23] Length = 342 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL + ++ R G + SK R EV + K+ QKG+GRAR ++ RGGGK FG Sbjct: 119 ILHHAITFEGDNTRQGTASSKTRYEVHGSHRKVRPQKGSGRARLGTRQSPVLRGGGKTFG 178 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN------------LVSKECK---- 135 P P L +KV A R ALS ++ ++++ ++ L K + Sbjct: 179 PKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKYMRDGLR 238 Query: 136 ----TKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDI 186 KY+ R L L A L + G +R ++ A +P L V+ ++V D+ Sbjct: 239 ETYLQKYMTGVLRTLGLGRADGRTLFVTGDPRERLYE-AMEQVPWEGRALDVEDVDVKDL 297 Query: 187 LRCSKLVLSKSAIEALEDRFK 207 L K+V+ +S ++ + +R + Sbjct: 298 LETGKVVMERSVLKEMIERHQ 318 >gi|302896424|ref|XP_003047092.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728020|gb|EEU41379.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 321 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 26/183 (14%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R E+ + KM QKGTGRAR +K RGGGK FGP P L +K Sbjct: 109 RQGTASTKNRWEINGSHRKMRPQKGTGRARLGTKQSPLLRGGGKVFGPKPRDFGTGLNRK 168 Query: 105 VRSLALRHALSDKFCSNDIMVIDN------------LVSKECK--------TKYLVTRFR 144 V A R ALS ++ D++V ++ L K K KY+ Sbjct: 169 VYDKAWRTALSYRYRKGDLIVCEDGMDLALPTDFELLAGKYLKDGMKETYLKKYMTGMLG 228 Query: 145 ALDLSNA----LIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDILRCSKLVLSKSAI 199 L L A L + G + + F+ A +P L ++ ++V D+L K+VL +S + Sbjct: 229 NLGLGRASGRTLFVTGNRREALFE-AMEQVPWEGRALDLEDVDVKDLLETGKVVLERSVL 287 Query: 200 EAL 202 + + Sbjct: 288 KEM 290 >gi|261854951|ref|YP_003262234.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2] gi|261835420|gb|ACX95187.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2] Length = 202 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 1/198 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 L +D ISVSE IF +G++ + + R G + RSEV+ G K + Q Sbjct: 2 ELQVKDGAAISVSEQIFDRSYNEGLIHQAVVAFMAGARSGTKRQLTRSEVSGGGKKPWNQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +R GG F P + +K +A+ S+ + ++V++ Sbjct: 62 KGSGRARAGTTRSPIWRTGGVTFAARPRNFEQKINRKAYRVAMASIFSELVRQDRLIVVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDI 186 +L KT+ ++ + L + + + D +F L +RN+ + L ++ + Sbjct: 122 SLTVSSPKTREVLGLVKNLGIQGGRTLFVAEAFDEHFFLGSRNVIELGYLTADMLDPVSL 181 Query: 187 LRCSKLVLSKSAIEALED 204 + ++V++++A++ +E+ Sbjct: 182 VGAERVVITRAAVKMVEE 199 >gi|308496497|ref|XP_003110436.1| hypothetical protein CRE_05535 [Caenorhabditis remanei] gi|308243777|gb|EFO87729.1| hypothetical protein CRE_05535 [Caenorhabditis remanei] Length = 243 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ ++ E G++ + DIF P+ IL R L WQS + + +K ++E+ G K Sbjct: 97 SLETIEDEKLGLVDLHPDIFRATPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 156 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP VR L AL+ K +D+ Sbjct: 157 WPQKKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHAQDDL 216 Query: 124 MVIDNL 129 ++DN+ Sbjct: 217 HIVDNI 222 >gi|315587207|gb|ADU41588.1| ribosomal protein L4/L1 family protein [Helicobacter pylori 35A] Length = 215 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRTEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLVAAFSSVVMEEAAFQ 206 >gi|317182564|dbj|BAJ60348.1| 50S ribosomal protein L4 [Helicobacter pylori F57] Length = 215 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLVAAFSSVVMEEAAFQ 206 >gi|208435215|ref|YP_002266881.1| ribosomal protein L4 [Helicobacter pylori G27] gi|226730673|sp|B5Z8W6|RL4_HELPG RecName: Full=50S ribosomal protein L4 gi|208433144|gb|ACI28015.1| ribosomal protein L4 [Helicobacter pylori G27] Length = 215 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 C +D +LA N+ ++ V +N Y + S +V+ ++A + + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVNELNAYLLAAFSSVVMEEAAFQHI 208 >gi|317013105|gb|ADU83713.1| 50S ribosomal protein L4 [Helicobacter pylori Lithuania75] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVNELNAYLLAAFSSVVMEEAAFQ 206 >gi|308064095|gb|ADO05982.1| 50S ribosomal protein L4 [Helicobacter pylori Sat464] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRTEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|308185070|ref|YP_003929203.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180] gi|308060990|gb|ADO02886.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|224092093|ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1| predicted protein [Populus trichocarpa] Length = 279 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TGRAR S GGG FGP P + + Sbjct: 90 KRRGTASTLTRGEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINR 149 Query: 104 KVRSLALRHAL-SDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + LA+ AL S S ++ ++ K + KTK + LD ++ Sbjct: 150 KEKRLAMSTALSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEKVMFLMMD 209 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + N L++RNI + +L + +N++DIL KLVL+ ++ L R+ Sbjct: 210 VSDNVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRY 257 >gi|188528106|ref|YP_001910793.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470] gi|217033635|ref|ZP_03439063.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10] gi|308183428|ref|YP_003927555.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4] gi|226730674|sp|B2UV81|RL4_HELPS RecName: Full=50S ribosomal protein L4 gi|188144346|gb|ACD48763.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470] gi|216943981|gb|EEC23415.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10] gi|297380499|gb|ADI35386.1| 50S ribosomal protein L4 [Helicobacter pylori v225d] gi|308065613|gb|ADO07505.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4] gi|317178057|dbj|BAJ55846.1| 50S ribosomal protein L4 [Helicobacter pylori F16] gi|317178391|dbj|BAJ56179.1| 50S ribosomal protein L4 [Helicobacter pylori F30] gi|317181040|dbj|BAJ58826.1| 50S ribosomal protein L4 [Helicobacter pylori F32] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|207091946|ref|ZP_03239733.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_AG0C1] gi|207108255|ref|ZP_03242417.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_CA4C1] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANSAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CLNMDEYTELAFSNLKKCLIIDVNELNAYLLAAFSSVVMEEAAFQ 206 >gi|308062603|gb|ADO04491.1| 50S ribosomal protein L4 [Helicobacter pylori Cuz20] Length = 215 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|15612303|ref|NP_223956.1| 50S ribosomal protein L4 [Helicobacter pylori J99] gi|7674310|sp|Q9ZJR5|RL4_HELPJ RecName: Full=50S ribosomal protein L4 gi|4155815|gb|AAD06789.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pylori J99] Length = 215 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CLNMDEYTELAFSNLKKCLVIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|261840033|gb|ACX99798.1| 50S ribosomal protein L4 [Helicobacter pylori 52] Length = 215 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDDKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|254779860|ref|YP_003057966.1| 50S ribosomal protein L4 [Helicobacter pylori B38] gi|254001772|emb|CAX30003.1| 50S ribosomal subunit protein L4 [Helicobacter pylori B38] Length = 215 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIVDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|217032071|ref|ZP_03437571.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128] gi|298735657|ref|YP_003728182.1| 50S ribosomal protein L4 [Helicobacter pylori B8] gi|216946219|gb|EEC24827.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128] gi|298354846|emb|CBI65718.1| large subunit ribosomal protein L4 [Helicobacter pylori B8] gi|317011518|gb|ADU85265.1| 50S ribosomal protein L4 [Helicobacter pylori SouthAfrica7] Length = 215 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIVDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|237751235|ref|ZP_04581715.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879] gi|229372601|gb|EEO22992.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879] Length = 204 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 2/162 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +++K R +V+ G K + QKG GRAR S + F GGG + GP + K Sbjct: 43 RANNAQAKTRGKVSGGGKKPWAQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL +AL K + +I+++ + KTK +F+AL + L + ++ F Sbjct: 103 KQKRLALEYALQQKANEGKLFIIESINVESGKTKDAFAQFKALGQRSTLFVTQVSNEKTF 162 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 LA RN+ + L +N Y + +V+ K+ + L R Sbjct: 163 -LAFRNLQSCYLADASELNAYLVAAFRSVVIEKAVFDELVKR 203 >gi|303283616|ref|XP_003061099.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457450|gb|EEH54749.1| predicted protein [Micromonas pusilla CCMP1545] Length = 254 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + + +SEV G K + QKGTG AR S GGG +FGP P + KK Sbjct: 83 RRGTASTLTKSEVRGGGRKPFNQKGTGNARAGSIRSPLKPGGGVSFGPKPKDWSIKMNKK 142 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFRALDLSN---ALIIDGCQL 159 R LA+ A+ + + ++V+D+L + KTK + +A + A +I Sbjct: 143 ERRLAMATAI--QSAAGSMIVVDDLGANVSVAKTKTMANALKAWGVEEGEKAYVITKDAS 200 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 D +L+ RN+ + + +NVYD+L K+V+ +SA++ + D + Sbjct: 201 DA-VKLSTRNMAKVVQSDISHLNVYDVLNADKVVVEESALKYINDFY 246 >gi|15645931|ref|NP_208110.1| 50S ribosomal protein L4 [Helicobacter pylori 26695] gi|2500233|sp|P56032|RL4_HELPY RecName: Full=50S ribosomal protein L4 gi|2314480|gb|AAD08357.1| ribosomal protein L4 (rpl4) [Helicobacter pylori 26695] Length = 215 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIVDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|94676724|ref|YP_588777.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166234636|sp|Q1LTD7|RL4_BAUCH RecName: Full=50S ribosomal protein L4 gi|94219874|gb|ABF14033.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 201 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VS +IF + + ++ +V+ + R G K R+EV + K + QKGTGRAR Sbjct: 12 LTVSNNIFGYRFNEALIHQVIVAYAAHTRSGNHAQKSRAEVVGSNKKPWRQKGTGRARAG 71 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ AL+ S+ ++V++ + KT Sbjct: 72 TVKSPLWRSGGVTFAAKPRDYSQKINKKMYRGALKSIFSELIRQKRLIVVEQFCIQAPKT 131 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + + L LII A + + + IN+ ++ +++++ Sbjct: 132 KLLVDKLKKITLKKVLIITHLLELNLLLAARNLY-TVEICDIANINLISLVTFDQVIITA 190 Query: 197 SAIEALEDRF 206 ++I+ +E+R Sbjct: 191 NSIKQIEERL 200 >gi|145509084|ref|XP_001440486.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407703|emb|CAK73089.1| unnamed protein product [Paramecium tetraurelia] Length = 318 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 3/205 (1%) Query: 6 VRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +R D + G I++ ++IF ++ ++ R++R+ + + + A +G+K Sbjct: 38 IRFHDAQPTGQSIALDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKN 97 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QK TGRAR + G KA G LP+KVR A + L+ Sbjct: 98 HPQKKTGRARQGHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFT 157 Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 VID E KTK+LV + + LI+ D F A+RN+ N+ V+ N Sbjct: 158 VIDTEKLNEGKTKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLENLETCTVKEFN 217 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 + IL+ ++++K AI L + K Sbjct: 218 IIKILKFKSILITKEAIIQLTESLK 242 >gi|33519659|ref|NP_878491.1| 50S ribosomal protein L4 [Candidatus Blochmannia floridanus] gi|46577208|sp|Q7VQE7|RL4_BLOFL RecName: Full=50S ribosomal protein L4 gi|33517322|emb|CAD83707.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia floridanus] Length = 212 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 1/191 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F ++ +++ R G K RS+V+ + K + QKGTGRAR Sbjct: 21 VSVSDKVFGYPFNPALIHQIVSSYLINCRQGSKSQKSRSDVSGSNKKPWRQKGTGRARSG 80 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECK 135 S +R GG F P + KK+ A++ LS C N + +I++L + K Sbjct: 81 SVKSPIWRSGGVTFASKPKKYDQKINKKMYKGAMKSILSKLVCDNRLFLIEDLFLEKPKT 140 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 L + LI+ +D+N LA+ N+ + + + I+ ++ + +L Sbjct: 141 NLLLKKLKNITSDRSVLIVTDNVIDKNLILASSNLHTVKIYNLNSIDPVSLINFNITLLF 200 Query: 196 KSAIEALEDRF 206 ++ +E+LE R Sbjct: 201 RTIVESLELRL 211 >gi|108563688|ref|YP_628004.1| 50S ribosomal protein L4 [Helicobacter pylori HPAG1] gi|122386212|sp|Q1CRU2|RL4_HELPH RecName: Full=50S ribosomal protein L4 gi|107837461|gb|ABF85330.1| ribosomal protein L4 [Helicobacter pylori HPAG1] Length = 215 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CLNMDECTELAFSNLKKCLIIDVNELNAYLLAAFSSVVMEEAAFQ 206 >gi|157164387|ref|YP_001467719.1| 50S ribosomal protein L4 [Campylobacter concisus 13826] gi|166234649|sp|A7ZG11|RL4_CAMC1 RecName: Full=50S ribosomal protein L4 gi|157101429|gb|EAT97240.2| ribosomal protein L4/L1 family [Campylobacter concisus 13826] Length = 204 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K R+ V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANSAHTKSRAFVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL +AL+ K I +D++ + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALEYALAVKAQDGKIFAVDSISIESGKTKDAANIIKNLKVKDALIVKDL-LDDKT 161 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ N ++ +N Y + S +++ K+A++ + Sbjct: 162 LLAFRNLANCYVVDANEVNAYLVSTFSSVIIEKAALKTI 200 >gi|307637989|gb|ADN80439.1| LSU ribosomal protein L4p:L1e [Helicobacter pylori 908] Length = 215 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSIISPVFVGGGVSHGATNKRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE-ALEDR 205 C +D +LA N+ ++ V +N Y + S +V+ ++A + A++D+ Sbjct: 162 -CMNMDEYTELAFSNLKKCLVIDVSELNAYLLAAFSSVVMEEAAFQHAVQDK 212 >gi|283794898|ref|YP_003359251.1| ribosomal protein L4 [Cryptomonas paramecium] gi|253981870|gb|ACT46787.1| ribosomal protein L4 [Cryptomonas paramecium] Length = 214 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Query: 35 RVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP 94 R+L Q+ +R + SK R+EV G K + QKGTGRAR S ++GGG FGP P Sbjct: 41 RILTIQNKNQRCKTACSKTRAEVRGGGRKPWKQKGTGRARAGSSVSPLWKGGGVVFGPKP 100 Query: 95 IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFRALD---LS 149 + + K R LA+ L CS I+++ N VS + +TK + + D LS Sbjct: 101 TVYNKKINFKERQLAIFTGLYA--CSYKIVIVRNFVSSIAQPRTKAFLGLLSSFDPSLLS 158 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 ++I + + RN+ I + + + + DI +++++ A+ Sbjct: 159 KRILILVPKATETLYSSCRNVEKITIGSRKTLTLRDIFLADSILIAEEAL 208 >gi|2791998|emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana] gi|2792000|emb|CAA74894.1| ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TG AR S+ GGG FGP P + + Sbjct: 94 KRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINR 153 Query: 104 KVRSL-ALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + L S +V++ K + KTK L+ + LD + Sbjct: 154 KEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDLLAAMQRWGLDPKEKAMFLMID 213 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +D N ++RNI + +L + +N++DIL KLVL+ +A+E L R+ Sbjct: 214 VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|317010001|gb|ADU80581.1| 50S ribosomal protein L4 [Helicobacter pylori India7] Length = 215 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNQRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K ++ + V++ + V ++ K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQADKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ ++A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLIIDVSELNAYLLAAFSSVVMEEAAFQ 206 >gi|313678366|ref|YP_004056106.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45] gi|312950123|gb|ADR24718.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45] Length = 323 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 2/165 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALP 102 +R G K R+EV G K + QKGTGRAR S + GGG+AFGP P + Sbjct: 160 RRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPARNYKLKVN 219 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KKVR A AL+ + +VID+ + TK + + L + N I D Sbjct: 220 KKVRFNAFISALT-LLAQSKAVVIDDFKLESISTKAAINKLNDLGIKNQKHILIATNDEV 278 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + N+ N+ + ++V +++ LVLS E E R K Sbjct: 279 TYKSVANLQNVICVKPSSVSVENLIWADVLVLSTEGYENFEGRIK 323 >gi|84998326|ref|XP_953884.1| hypothetical protein [Theileria annulata] gi|65304881|emb|CAI73206.1| hypothetical protein, conserved [Theileria annulata] Length = 464 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS--KMYVQKGTGRAR 74 + V DIF L + IL R ++ R + G S+ + + GS K Q+ +G+AR Sbjct: 110 LRVPNDIFGLPIRPDILHRCYQFYR-RAKAGYSEDMQLYKWEWPGSTKKWRKQQKSGKAR 168 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHAL-PKK--------------VRSLAL----RHALS 115 K + GK G + H L PK +R LAL + LS Sbjct: 169 IGWK-----KSPGKYVG----VFAHPLRPKDNRTKIQRRSKLVFLIRFLALYTGLKIMLS 219 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNA--LIIDG-CQLDRNFQLAARNI 170 KF + I V+D+ + KTKY V R + D N+ L+ +G + NF+ + NI Sbjct: 220 AKFAQSQIQVVDSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGLSDSNENFRWSTANI 279 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 P++ V+G+NVY++L+ +LV+++SA+ L Sbjct: 280 PSVRRETVEGVNVYNLLKYRQLVITQSALRKL 311 >gi|242309320|ref|ZP_04808475.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489] gi|239523891|gb|EEQ63757.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 4/163 (2%) Query: 41 SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH- 99 S R +K++GR V+ G K + QKG GRAR S + F GGG + GP + Sbjct: 41 SMRANNAMAKTRGR--VSGGGKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNL 98 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 + KK + LAL++AL +K + + ++D + KTK T F+ L+ N L + Sbjct: 99 KVNKKQKKLALQYALQEKADNGSLFIVDKIQIPSGKTKDAYTMFKTLNQRNILFVSEM-F 157 Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 D A RN+ L+ +N Y +V+ K+ EA+ Sbjct: 158 DEKTYFAFRNLKECYLIDGAELNAYLAATFRAVVIEKALFEAI 200 >gi|307069691|ref|YP_003878168.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia insecticola CARI] gi|306482951|gb|ADM89822.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia insecticola CARI] Length = 208 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 48 CSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVR 106 SK K RSEV + K++ QKGTGRAR + S +RGGGK F + KK+ Sbjct: 47 ISKQKNRSEVKHNKKKLWKQKGTGRARVGNISSPLWRGGGKIFPNTSNENYRKKINKKMY 106 Query: 107 SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQ 164 +++ LS N +++++N + KTK ++ + + S+ I+D +L+ N Sbjct: 107 KISISSILSQLNRENRLLILNNFLIDNFKTKNILKKINKITYKKSSLFILD--KLNFNIL 164 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 + +N+ NI + + IN ++ K++L ++ + ++ Sbjct: 165 YSFKNLYNIFFIYINKINPISLINFQKIILMENTLYKIQ 203 >gi|289619254|emb|CBI54221.1| unnamed protein product [Sordaria macrospora] Length = 349 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 31/219 (14%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + S S L ++ IL + ++ R+G + SK R EV + KM QKGTG Sbjct: 100 EPRSLESYSARHLHLPLRRDILHLAVIYEGDSTRLGMASSKTRYEVHGSHKKMIAQKGTG 159 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN--- 128 AR +K +GGGK+FGP P L KKV LA R ALS ++ +++V ++ Sbjct: 160 HARRGTKQSPLQKGGGKSFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGELIVTEDGLD 219 Query: 129 --------------LVSKECKTKYLVTRFRAL--------DLSNALIIDG---CQLDRNF 163 +S+E + Y+ R + I G L F Sbjct: 220 LPLPDDFLWLAGGGKLSRELEDAYVRKWVREFMTGLNWGKEAGRTTFITGDKRPNLFTGF 279 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +LA + L V +V D+L ++V+ +SA++ + Sbjct: 280 ELAGAEGRALELWDV---DVKDLLETGRIVIERSALKEM 315 >gi|84625043|ref|YP_452415.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879274|ref|YP_202221.6| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|188575491|ref|YP_001912420.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae PXO99A] gi|109893661|sp|Q2NZY6|RL4_XANOM RecName: Full=50S ribosomal protein L4 gi|226731445|sp|B2SQR1|RL4_XANOP RecName: Full=50S ribosomal protein L4 gi|84368983|dbj|BAE70141.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519943|gb|ACD57888.1| ribosomal protein L4/L1 family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 201 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVSE +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 127 ATKTKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|109893662|sp|Q5GWT5|RL4_XANOR RecName: Full=50S ribosomal protein L4 Length = 200 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVSE +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 11 VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 69 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 70 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLE 125 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 126 ATKTKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 185 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 186 VITADAVKKVEE 197 >gi|50303315|ref|XP_451599.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640731|emb|CAH01992.1| KLLA0B01540p [Kluyveromyces lactis] Length = 262 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 1/109 (0%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 V +F ++ +L R + +++ KR+G S GRS+V Y+ K+ QKG+G AR Sbjct: 50 VPTSVFDAPLRRDLLWRAVVYENDSKRVGSSNPPGRSDVGYSRRKILPQKGSGMARAGDA 109 Query: 79 SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 + GG+A P ALPKKV SLA +ALS ++ + ++ VI Sbjct: 110 NSPIRHNGGRALARTAPNDYTTALPKKVYSLAFNNALSHQYRNGNVFVI 158 >gi|30680078|ref|NP_849604.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|332189986|gb|AEE28107.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 280 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TG AR S+ GGG FGP P + + Sbjct: 94 KRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINR 153 Query: 104 KVRSL-ALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + L S +V++ K + KTK + + LD + Sbjct: 154 KEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMID 213 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +D N ++RNI + +L + +N++DIL KLVL+ +A+E L R+ Sbjct: 214 VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|18390754|ref|NP_563786.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|21542429|sp|O50061|RK4_ARATH RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis thaliana] gi|21436209|gb|AAM51392.1| unknown protein [Arabidopsis thaliana] gi|110741117|dbj|BAE98652.1| hypothetical protein [Arabidopsis thaliana] gi|332189985|gb|AEE28106.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TG AR S+ GGG FGP P + + Sbjct: 94 KRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINR 153 Query: 104 KVRSL-ALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + L S +V++ K + KTK + + LD + Sbjct: 154 KEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMID 213 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +D N ++RNI + +L + +N++DIL KLVL+ +A+E L R+ Sbjct: 214 VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|79317138|ref|NP_001030985.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|79317147|ref|NP_001030986.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34 [Arabidopsis thaliana] gi|222423413|dbj|BAH19678.1| AT1G07320 [Arabidopsis thaliana] gi|332189987|gb|AEE28108.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|332189988|gb|AEE28109.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 278 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TG AR S+ GGG FGP P + + Sbjct: 94 KRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINR 153 Query: 104 KVRSL-ALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + L S +V++ K + KTK + + LD + Sbjct: 154 KEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMID 213 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +D N ++RNI + +L + +N++DIL KLVL+ +A+E L R+ Sbjct: 214 VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|145535756|ref|XP_001453611.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421333|emb|CAK86214.1| unnamed protein product [Paramecium tetraurelia] Length = 318 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 3/205 (1%) Query: 6 VRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +R D + G I++ ++IF ++ ++ R++R+ + + + A +G+K Sbjct: 38 IRFHDAQPSGQSITLDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKN 97 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QK TGRAR + G KA G LP+KVR A + L+ Sbjct: 98 HPQKKTGRARQGHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFT 157 Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 VID E KTK+LV + + LI+ D F A+RN+ ++ V+ N Sbjct: 158 VIDTEKLNEGKTKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLDSLETCTVKEFN 217 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 + IL+ ++++K AI L + K Sbjct: 218 IIKILKFKSILITKEAILQLTESLK 242 >gi|46576793|sp|Q85FW2|RK4_CYAME RecName: Full=50S ribosomal protein L4, chloroplastic Length = 200 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 7/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R LR R + +K R+E+ G K + QKGTGRAR S+ +RGGG AFG Sbjct: 23 LLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVAFG 82 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKF--CSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149 P GV A+ K+ R A F CS I +++ + ++ ++ + L Sbjct: 83 PR---GV-AMECKLNRKESRKATKIAFMACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 138 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L I + + + L+ RNI + L+ + I V +L ++ +S AI LE++ Sbjct: 139 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 194 >gi|315930641|gb|EFV09663.1| 50S ribosomal protein L4 (BL4) [Campylobacter jejuni subsp. jejuni 305] Length = 171 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 2/129 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +KGRS+V+ G K + QKG G AR S + + GG AFGP + K Sbjct: 43 RANTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL+DK + D+L + KTK + L + +ALI+ LD Sbjct: 103 KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKT 161 Query: 164 QLAARNIPN 172 LA RN+ N Sbjct: 162 LLAYRNLAN 170 >gi|30468183|ref|NP_849070.1| ribosomal protein L4 [Cyanidioschyzon merolae strain 10D] gi|30409283|dbj|BAC76232.1| 50S ribosomal protein L4 [Cyanidioschyzon merolae strain 10D] Length = 181 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 7/177 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L R LR R + +K R+E+ G K + QKGTGRAR S+ +RGGG AFG Sbjct: 4 LLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVAFG 63 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKF--CSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149 P GV A+ K+ R A F CS I +++ + ++ ++ + L Sbjct: 64 PR---GV-AMECKLNRKESRKATKIAFMACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 119 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L I + + + L+ RNI + L+ + I V +L ++ +S AI LE++ Sbjct: 120 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 175 >gi|71033543|ref|XP_766413.1| hypothetical protein [Theileria parva strain Muguga] gi|68353370|gb|EAN34130.1| hypothetical protein, conserved [Theileria parva] Length = 439 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 36/212 (16%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS--KMYVQKGTGRAR 74 + V DIF L + IL R ++ R + G S+ + + GS K Q+ TG+AR Sbjct: 110 LRVPNDIFGLPLRPDILHRCYQFYR-RAKAGYSEDMQLYKWEWPGSTKKWRKQQKTGKAR 168 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHAL-PKKVRS------------------LALRHALS 115 K + GK G + H L P R+ L+ LS Sbjct: 169 IGWK-----KSPGKYMG----VFAHPLRPHDNRTKIQRRSTLIFLTRFLALYTGLKIMLS 219 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNA--LIIDGC-QLDRNFQLAARNI 170 KF + I V+D+ + KTKY V R + D N+ L+ +G + NF+ + NI Sbjct: 220 AKFAQSQIQVVDSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGVSDSNENFRWSTANI 279 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 P++ V+G+NVY++L+ +LV++++A++ L Sbjct: 280 PSVRRETVEGVNVYNLLKYRQLVITQAALKKL 311 >gi|21537296|gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103 KR G + + R EV G K Y QK TG AR S+ GGG FGP P + + Sbjct: 94 KRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINR 153 Query: 104 KVRSL-ALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + L S +V++ K + KTK + + LD + Sbjct: 154 KEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKPMFLMID 213 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +D N ++RNI + +L + +N++DIL KLVL+ +A+E L R+ Sbjct: 214 VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|156844943|ref|XP_001645532.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM 70294] gi|156116196|gb|EDO17674.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM 70294] Length = 280 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL + + +++ R+R+G S GRSE Y+ K++ QKGTGRAR + GG+A Sbjct: 71 ILWQAVVYENDRRRVGASNPPGRSENGYSRRKLHKQKGTGRARVGDANSPTRHNGGQALA 130 Query: 92 -PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 P V LP K+ S A +ALS ++ S +++VI N Sbjct: 131 RTAPNNYVTDLPAKLYSKAFINALSHQYQSGNLIVIGN 168 >gi|148377808|ref|YP_001256684.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2] gi|148291854|emb|CAL59244.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2] Length = 300 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 2/165 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALP 102 +R G K R+EV G K + QKGTGRAR S + GGG+AFGP P+ + Sbjct: 137 RRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPVRNYKLKVN 196 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KKVR A L+ + +V+D+ + TK + + L + I D Sbjct: 197 KKVRFNAFVSVLT-LLAQSKAVVVDDFKLESISTKAAINKLSELGIKEQKHILIATNDEV 255 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + N+ N+ + ++V +++ LVLS E E R K Sbjct: 256 TYKSVANLQNVICVKPTSVSVENLIWADVLVLSTEGYENFEGRIK 300 >gi|300120113|emb|CBK19667.2| unnamed protein product [Blastocystis hominis] Length = 162 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 52/93 (55%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +++++ +F + ++ IL RV+ WQ ++R G K SEV+ + K + QKGTGRAR Sbjct: 10 LVTLNNRVFGMPLREDILQRVVVWQLAKRRQGTHCVKTLSEVSGSNRKPFPQKGTGRARQ 69 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108 K Q RGG K GP P + LP K S+ Sbjct: 70 GQKRAPQMRGGYKPMGPRPRDYDYPLPMKGNSI 102 >gi|109946760|ref|YP_663988.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba] gi|123362794|sp|Q17ZD7|RL4_HELAH RecName: Full=50S ribosomal protein L4 gi|109713981|emb|CAJ98989.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba] Length = 215 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +KSK R+EV+ G K + QKG GRAR S + F GGG + G + + K Sbjct: 43 RANTAKSKNRAEVSGGGRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNL----VSKECKTKYLVTR----FRALDLSNALIID 155 K + LAL +AL +K +N + V++ + V + K K+L F+AL+ + L + Sbjct: 103 KQKRLALEYALEEKAQANKLFVVEKIAIKGVVEYNKRKHLAKEANKMFQALEQRDTLFV- 161 Query: 156 GC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 C +D +LA N+ ++ V +N Y + S +V+ + A + Sbjct: 162 -CMNMDEYTELAFSNLKKCLVIDVSELNAYLLAAFSSVVMEEVAFQ 206 >gi|21230365|ref|NP_636282.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769641|ref|YP_244403.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. 8004] gi|188992853|ref|YP_001904863.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. B100] gi|46577276|sp|Q8PC48|RL4_XANCP RecName: Full=50S ribosomal protein L4 gi|81304404|sp|Q4URE0|RL4_XANC8 RecName: Full=50S ribosomal protein L4 gi|226731444|sp|B0RU81|RL4_XANCB RecName: Full=50S ribosomal protein L4 gi|21111921|gb|AAM40206.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574973|gb|AAY50383.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. 8004] gi|167734613|emb|CAP52823.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris] Length = 201 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D+ + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDSFDIE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + +D+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 127 ATKTKGLIEKLKGMDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|289665138|ref|ZP_06486719.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669345|ref|ZP_06490420.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 201 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 127 ATKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|328910078|gb|AEB61674.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens LL3] Length = 100 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 56/97 (57%) Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 +A++ LS K N+I+V+++L KTK + + L + +I + L+A Sbjct: 1 MAIKSVLSSKVNDNNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSA 60 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 RNIP + ++ GINV D++ KL+++K+A+E +E+ Sbjct: 61 RNIPGVTVVQANGINVLDVVNHEKLLITKAAVEKVEE 97 >gi|224437284|ref|ZP_03658256.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] gi|313143739|ref|ZP_07805932.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] gi|313128770|gb|EFR46387.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] Length = 207 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R +++K R EV+ G K + QKG GRAR S + F GGG + GP + + K Sbjct: 43 RANNARAKKRGEVSGGGKKPWNQKGGGRARAGSITSPVFVGGGVSHGPSNDRSYNLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL K + VID++ KTK F+AL + L + + F Sbjct: 103 KQKRLALECALHQKAQEGKLFVIDSVAMPSGKTKDAYAMFKALKQRSTLFVAQMSDEPTF 162 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ L +N Y + +V+ K+ + + Sbjct: 163 -LAFRNLQQCYLADANELNAYLVAAFRSVVIEKAVFDEI 200 >gi|156097819|ref|XP_001614942.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803816|gb|EDL45215.1| hypothetical protein, conserved [Plasmodium vivax] Length = 535 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 10/201 (4%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-GCSKSKGRSEVAYTGS--KMYV 66 D E+ +SV DIF L + IL + + +R + G ++ + + GS K Sbjct: 135 DDENIKYVSVPNDIFGLPIRPDILHKC--YYFYRTALAGYTERMQLYKWEWPGSTKKYRS 192 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QK +G+AR + + G K P + +K+ ++ LS KF + I V+ Sbjct: 193 QKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWRGMKIILSAKFAQDQIKVV 252 Query: 127 DNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGI 181 DN + K KTKY V R + + ++AL++ + D NF A NI ++ VQG+ Sbjct: 253 DNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIASVKRENVQGV 312 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N+Y++L+ +V + A++ L Sbjct: 313 NIYNLLKYRFVVFTYKALQNL 333 >gi|325916488|ref|ZP_08178757.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937] gi|325537277|gb|EGD09004.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937] Length = 203 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 14 VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 72 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 73 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDVE 128 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KT+ L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 129 TTKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 188 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 189 VITADAVKKVEE 200 >gi|291413252|ref|XP_002722892.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Oryctolagus cuniculus] Length = 162 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 11/102 (10%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ +L +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPDVFATAPRLDVLHQVAVWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVR 106 + QKG+GRARH S +RG G+H PK+V+ Sbjct: 128 WQQKGSGRARHGSIRSPIWRG-----------GLHGDPKRVQ 158 >gi|148927109|ref|ZP_01810739.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1] gi|147887428|gb|EDK72872.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1] Length = 199 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK- 103 R + +K R EV G K + QKGTGRAR S +RGGG FGP G K Sbjct: 33 RTSAASTKKRGEVRGGGRKPHKQKGTGRARAGSIRSPLWRGGGVTFGPS---GNENYKKQ 89 Query: 104 ---KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQ 158 K + +A+R AL+ + I+ D VS KTK + + D+ L++ + Sbjct: 90 LNVKAKRVAVRQALTLAAQAGKIITAD--VSATGKTKDMTAFLKDQKADVRRTLLVV-SE 146 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 A N+ NI L+ ++V+ +L K++++ +AI A+E Sbjct: 147 KSPELIRATGNLQNIELVRATYLSVFHVLNADKIIMTPTAITAIE 191 >gi|295698648|ref|YP_003603303.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola USDA] gi|291157110|gb|ADD79555.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola USDA] Length = 202 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 15/209 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ LD K I +S+ IF ++ ++ +V++ R G K RS+V+ + Sbjct: 1 MELTI--LDTHKK--IQISDRIFNVRLNHSLVHQVIKSFLSNLRTGTKSQKNRSQVSGSN 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S +R GG AF + KK+ A+R S+ N Sbjct: 57 KKPWKQKGTGHARAGSVKSPIWRSGGMAFATNFRSYKKKINKKMYKKAMRCIFSELIREN 116 Query: 122 DIMVIDNLVSKECKTKYL------VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +++++NL KTK + R R + ++I ++++ L++RN+ IN+ Sbjct: 117 RLVIVENLFLDRIKTKLFKKMIDDICRNR-----DKILIITKKINQFLILSSRNLHKINI 171 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204 V IN ++++ ++ + AI+ +E+ Sbjct: 172 CEVSEINPVNLIKNRTIISTVEAIKKVEE 200 >gi|189095433|ref|YP_001936446.1| ribosomal protein L4 [Heterosigma akashiwo] gi|157694776|gb|ABV66052.1| 50S ribosomal protein L4 [Heterosigma akashiwo] gi|157778007|gb|ABV70193.1| 50S ribosomal protein L4 [Heterosigma akashiwo] Length = 231 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K RSEV G K + QKGTGRAR S ++GGG FGP L KK Sbjct: 49 RNGNANTKTRSEVRGGGRKPWQQKGTGRARAGSNRSPLWKGGGVTFGPKTKTYKIKLNKK 108 Query: 105 VRSLALRHALSDKFCSNDIMVIDNL------VSKE-----CKTKYLVT------RFRAL- 146 LAL+ L +K N I VI + +SKE KTK L+ + R L Sbjct: 109 EWRLALQTLLFNK--KNSIRVIKSFSETFERISKEQGSNPQKTKTLLNFLNQFVKIRNLN 166 Query: 147 --DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 ++ N ++I + N ++N+ NI+++ +N+ +L ++L +++ +E+ Sbjct: 167 SNNIRNKILIVVPKKSLNLISTSQNLKNIDIIAADNLNIKSLLDSKYILLCTESLKIIEE 226 Query: 205 RF 206 + Sbjct: 227 TY 228 >gi|32266878|ref|NP_860910.1| 50S ribosomal protein L4 [Helicobacter hepaticus ATCC 51449] gi|46577204|sp|Q7VGE3|RL4_HELHP RecName: Full=50S ribosomal protein L4 gi|32262930|gb|AAP77976.1| ribosomal protein L4 [Helicobacter hepaticus ATCC 51449] Length = 207 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPK 103 R + +K R EV+ G K + QKG GRAR S + F GGG + GP + K Sbjct: 43 RANSASAKKRGEVSGGGKKPWKQKGGGRARAGSITSPVFVGGGVSHGPSNDKNYTLKINK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL AL K + V+D+L KTK F+AL + L + + F Sbjct: 103 KQKRLALECALFQKAQEGKLFVVDSLAMPSGKTKDAYAMFKALKQRSTLFVAQMSDEPTF 162 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RN+ L +N Y + +V+ K+ + + Sbjct: 163 -LAFRNLQQCYLADANELNAYLVAAFRSVVIEKAVFDEI 200 >gi|166710832|ref|ZP_02242039.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 201 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVSE +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + L + +I + + L+ARN+P + + VQG++ ++ + Sbjct: 127 ATKTKDLIEKLKGLHVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|324556508|gb|ADY49811.1| 50S ribosomal protein L4 [Ascaris suum] Length = 96 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 44/78 (56%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I++++D+FA+ P + L + Q R G K RS V+ G K + QKGTGRAR Sbjct: 8 ITLNDDVFAITPNEQALFDAVMLQRANVRQGTHSVKNRSAVSGGGRKPWRQKGTGRARQG 67 Query: 77 SKSVSQFRGGGKAFGPVP 94 + Q+RGGG FGP P Sbjct: 68 TIRAPQWRGGGVVFGPTP 85 >gi|226466798|emb|CAX69534.1| putative mitochondrial ribosomal protein L4 isoform a [Schistosoma japonicum] Length = 450 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-TGSKMYVQKGTGRA 73 G++ + DIFA+ P+ ++ + L WQ+ + I R+E+ Y T K + QK TG+A Sbjct: 97 GMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELPYGTRKKPWPQKKTGKA 156 Query: 74 RHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 RH ++ + GG+ GP P + LP R L L+ K ND+ ++D+ + Sbjct: 157 RHGNRRTHIWLTGGQCKGPRGPESFFYVLPYNERLAGLLSMLTIKHAQNDLHIVDDFMLS 216 Query: 133 EC 134 E Sbjct: 217 ET 218 >gi|21241738|ref|NP_641320.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str. 306] gi|78046556|ref|YP_362731.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294627844|ref|ZP_06706423.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294663997|ref|ZP_06729411.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325925386|ref|ZP_08186788.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118] gi|46577277|sp|Q8PNS3|RL4_XANAC RecName: Full=50S ribosomal protein L4 gi|109893660|sp|Q3BWY2|RL4_XANC5 RecName: Full=50S ribosomal protein L4 gi|21107109|gb|AAM35856.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str. 306] gi|78034986|emb|CAJ22631.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292597758|gb|EFF41916.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606226|gb|EFF49463.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544264|gb|EGD15645.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118] Length = 201 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M++D + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + L++ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 127 ATKTKGLIEKLKGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|291320505|ref|YP_003515769.1| 50S ribosomal protein L4 [Mycoplasma agalactiae] gi|290752840|emb|CBH40815.1| 50S ribosomal protein L4 [Mycoplasma agalactiae] Length = 300 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 2/165 (1%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALP 102 +R G K R+EV G K + QK TGRAR S + GGG+AFGP P+ + Sbjct: 137 RRQGTHDVKSRAEVRGGGKKPWRQKVTGRARAGSTRSPIWVGGGRAFGPTPVRNYKLKVN 196 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KKVR A AL+ + +V+D+ + TK + + L + I D Sbjct: 197 KKVRFNAFVSALT-LLAQSKAVVVDDFKLESISTKAAINKLSELGIKEQKHILIATNDEV 255 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + N+ N+ + ++V +++ LVLS E E R K Sbjct: 256 TYKSVANLQNVICVKPTSVSVENLIWADVLVLSTEGYENFEGRIK 300 >gi|85081598|ref|XP_956751.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora crassa OR74A] gi|28917827|gb|EAA27515.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora crassa OR74A] gi|38566840|emb|CAE76146.1| related to ribosomal protein YML6, mitochondrial [Neurospora crassa] Length = 349 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + S S L ++ IL + ++ R G + +K R EV + KM QKGTG Sbjct: 100 EPRSLESYSARHLHLPLRRDILHLAVIYEGDSTRRGMASTKTRYEVHGSHKKMSPQKGTG 159 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 AR ++ +GGGK FGP P L KKV LA R ALS ++ +++V ++ Sbjct: 160 NARRGTRQSPLMKGGGKTFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGELIVTED 216 >gi|145354841|ref|XP_001421683.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus lucimarinus CCE9901] gi|144581921|gb|ABO99976.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus lucimarinus CCE9901] Length = 251 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + + +SEV G K + QKGTG AR S GGG +FGP P + KK Sbjct: 80 RRGTASTLTKSEVRGGGRKPFKQKGTGNARAGSSRTPLKPGGGVSFGPKPRDWSIKMNKK 139 Query: 105 VRSLALRHALSDKFCSNDIMVIDNL---VSKECKTKYLVTRFR-ALDLSNALIIDGCQLD 160 R LA+ AL + ++ ++V+D++ +S + + + S + + Sbjct: 140 ERRLAMATAL--QSAASAMIVVDDISGNISAPGTNAFNKSLMAWGVGASEKAYVITKDAN 197 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N +ARNI + V +NVYDIL K+++ SA+ + F Sbjct: 198 ENVAKSARNIERVVQTDVSHLNVYDILNADKVIVEASALAHISSFF 243 >gi|152989973|ref|YP_001355695.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2] gi|166234694|sp|A6Q1H9|RL4_NITSB RecName: Full=50S ribosomal protein L4 gi|151421834|dbj|BAF69338.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2] Length = 204 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPK 103 R + +K R EV+ G K + QKG G AR S F GGG AFGP + K Sbjct: 43 RANNAHTKSRGEVSGGGRKPWQQKGRGGARAGSIRSPLFVGGGVAFGPKNTKNYTQKVNK 102 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + AL AL++K + ++D++ + KTK + + L++ +D Sbjct: 103 KQKRKALEFALNEKGEQGALFIVDSIAVESGKTKDAAAIVNKIGARDVLVVK-ENIDEKT 161 Query: 164 QLAARNIPNINLLPVQGINVY 184 LA RN+PN L+ +N Y Sbjct: 162 FLAFRNLPNAYLIEPNELNAY 182 >gi|254582070|ref|XP_002497020.1| ZYRO0D13552p [Zygosaccharomyces rouxii] gi|238939912|emb|CAR28087.1| ZYRO0D13552p [Zygosaccharomyces rouxii] Length = 258 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E V ++ A ++ IL R + +++ KR+G S GRS+ Y+ K++ QKGTG Sbjct: 40 EPLTFTPVPTNVLAAPLRRDILWRAVVYENDNKRVGSSNPPGRSDNGYSRRKLFPQKGTG 99 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 RAR + GG+A P LP K+ S A R+ALS ++ + VI Sbjct: 100 RARAGDANSPIRSTGGRALPRKAPNDFSTELPSKLYSAAFRNALSYQYQQGKLFVI 155 >gi|325921482|ref|ZP_08183337.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865] gi|325548029|gb|EGD19028.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865] Length = 203 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 14 VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 72 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + +M+++ + Sbjct: 73 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLMIVEAFDVE 128 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KT+ L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ + Sbjct: 129 ATKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTV 188 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 189 VITADAVKKIEE 200 >gi|6323616|ref|NP_013687.1| Yml6p [Saccharomyces cerevisiae S288c] gi|1710566|sp|P51998|RL4P_YEAST RecName: Full=54S ribosomal protein YmL6, mitochondrial; Flags: Precursor gi|575694|emb|CAA86630.1| unnamed protein product [Saccharomyces cerevisiae] gi|151946136|gb|EDN64367.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|285813978|tpg|DAA09873.1| TPA: Yml6p [Saccharomyces cerevisiae S288c] Length = 286 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + V A ++ IL R + +++ +R+G S GRSE ++ K+ QKG+GRAR Sbjct: 58 VPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVG 117 Query: 77 SKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID----NLVS 131 + GG+A P LP KV S+A +ALS ++ S + VI +L+S Sbjct: 118 DANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLIS 177 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQL 159 + LDL N ++G ++ Sbjct: 178 PTPELD-----LNRLDLVNTNTVEGKEI 200 >gi|221053458|ref|XP_002258103.1| hypothetical protein in Apicomplexan species [Plasmodium knowlesi strain H] gi|193807936|emb|CAQ38640.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium knowlesi strain H] Length = 589 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 10/201 (4%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-GCSKSKGRSEVAYTGS--KMYV 66 D E+ +SV DIF L + IL + + +R + G ++ + + GS K Sbjct: 185 DDENIKYMSVPNDIFGLPIRPDILHKC--YYFYRTALAGYTERMQLYKWEWPGSTKKYRS 242 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QK +G+AR + + G K P + +K+ ++ LS KF + I V+ Sbjct: 243 QKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWKGMKIMLSAKFAQDQIKVV 302 Query: 127 DNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGI 181 DN + K KTKY V R + + ++AL++ + D NF A NI ++ V G+ Sbjct: 303 DNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIVSVKRENVHGV 362 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N+Y++L+ +V + A++ L Sbjct: 363 NIYNLLKYRYVVFTYKALQNL 383 >gi|190408215|gb|EDV11480.1| 60S ribosomal protein YmL6, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|259148550|emb|CAY81795.1| EC1118_1M3_1255p [Saccharomyces cerevisiae EC1118] Length = 286 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++VR+ E + V A ++ IL R + +++ +R+G S GRSE ++ Sbjct: 44 VTVRSFPSLEPLTFVPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRR 103 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+GRAR + GG+A P LP KV S+A +ALS ++ S Sbjct: 104 KLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSG 163 Query: 122 DIMVID----NLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 + VI +L+S + LDL N ++G ++ Sbjct: 164 KLFVIGGEKVDLISPTPELD-----LNRLDLVNTNTVEGKEI 200 >gi|256270863|gb|EEU06001.1| Yml6p [Saccharomyces cerevisiae JAY291] Length = 287 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + V A ++ IL R + +++ +R+G S GRSE ++ K+ QKG+GRAR Sbjct: 59 VPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVG 118 Query: 77 SKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID----NLVS 131 + GG+A P LP KV S+A +ALS ++ S + VI +L+S Sbjct: 119 DANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLIS 178 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQL 159 + LDL N ++G ++ Sbjct: 179 PTPELD-----LNRLDLVNTNTVEGKEI 201 >gi|209736972|gb|ACI69355.1| Mitochondrial 39S ribosomal protein L4 [Salmo salar] Length = 132 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALP 102 K I + +K RSEV G K + QKG+G+ARH S +RGGG + GP P + LP Sbjct: 22 KIISRAHTKVRSEVRGGGKKPWRQKGSGKARHGSIRSPIWRGGGVSHGPRGPTSFYYMLP 81 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI 153 KVR ++ ALS K + + V+D L +YL+ R +L Sbjct: 82 MKVRVQGIKIALSSKLAQDYLHVVDTLNIPTPDPQYLMDLIRYRHWGGSLF 132 >gi|269115072|ref|YP_003302835.1| 50S ribosomal protein L4 [Mycoplasma hominis] gi|23306474|gb|AAM08936.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114] gi|268322697|emb|CAX37432.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114] Length = 322 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 11/187 (5%) Query: 23 IFALKP--QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 +F L+ Q I +L + R R+ K+K R EV+ +G K + QK TG AR S Sbjct: 137 VFGLEKIYNQAIFDAILSERGSR-RLATHKTKTRGEVSGSGKKPWDQKHTGNARAGSLRS 195 Query: 81 SQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 F GGGK FGP + + KK R AL AL+ + ++V + +SK T+ L Sbjct: 196 PIFVGGGKVFGPTTERNYNLKINKKTRRNALLSALTLLAKDHAVLVKEYSLSK-ISTREL 254 Query: 140 VTRF---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 + + + L+ L++ + L+ARN+PN+ + V ++V +L LV+S Sbjct: 255 LIKLNEDKIASLNKVLLVSNNE---TVFLSARNLPNVTVTKVTSLSVESLLAADVLVISS 311 Query: 197 SAIEALE 203 ++ LE Sbjct: 312 DDVKYLE 318 >gi|116199351|ref|XP_001225487.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51] gi|88179110|gb|EAQ86578.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51] Length = 319 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 25/216 (11%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + S S L ++ IL + ++ + R G + SK R EV + K+ QKG+G Sbjct: 75 EPRSLESWSTKHLHLPLRRDILHLAVVYEGDKTRQGTASSKTRFEVHGSHRKLRPQKGSG 134 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR K +GGGK FGP P L +KV LA R ALS ++ +++V ++ + Sbjct: 135 RARVGIKQSPLMKGGGKTFGPKPRDFSTKLNRKVYDLAWRTALSYRYRRGELIVTEDGLE 194 Query: 132 KECKTKYL-VTRFRAL--DLSNALI-------IDGCQLD----RNFQLAARNIPNI---- 173 ++L + A+ +L ++ I + Q D R + PN+ Sbjct: 195 LPLPEEFLQLAESGAMGRELEDSFISKYVGELMTALQWDKDNGRTTFITGDRRPNLFTGL 254 Query: 174 -------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 L ++ ++V D+L ++V+ ++A+ + Sbjct: 255 DIAGENGRALELEDVDVKDLLETGRIVIERTALREM 290 >gi|148693201|gb|EDL25148.1| mitochondrial ribosomal protein L4, isoform CRA_b [Mus musculus] Length = 194 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 63 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 122 Query: 65 YVQKGTGRARHSSKSVSQFRGG 86 + QKG+GRARH S +RGG Sbjct: 123 WQQKGSGRARHGSIRSPLWRGG 144 >gi|313232345|emb|CBY09454.1| unnamed protein product [Oikopleura dioica] Length = 355 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 33/211 (15%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ----KG 69 +G+ + I+ Q + L WQ+ K + S + R E TG+K + + G Sbjct: 103 EGIAQLHPKIWTAVVDQQAIHETLEWQNTYKTVDMSFEQSRME---TGNKRWAKPWGGSG 159 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVP----IIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 G R K+ F+GG AF P I H + + R AL L+ KF D+++ Sbjct: 160 HGYERVRDKTGPYFKGG--AFTDEPRRPFISNFHMIDRVTRVKALVSCLTLKFLQGDMIL 217 Query: 126 IDNL------VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNI----PNINL 175 + NL +SK+ K R ++S L+++ D N+ + N NL Sbjct: 218 VSNLSNSIDSISKKLNIK------REPEMS-YLVLNK---DNNYPIPLENWIRSKKYYNL 267 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV+G+N +L+ KL+L +E LE R Sbjct: 268 FPVEGLNAKSLLKYDKLILDLETLEYLEKRL 298 >gi|226295376|gb|EEH50796.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb18] Length = 272 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 22/175 (12%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RGGG Sbjct: 104 RRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRGGGV 163 Query: 89 AFGPVPIIGVHALPKKVRSLALR-HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD 147 A GP P LPKK+ LA R L D F N Sbjct: 164 AHGPHPRDFSTKLPKKIYDLAWRTRWLEDVFEKNQW---------------------GKS 202 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L+I + +R F + +L + ++V D+L ++L++ K A++ + Sbjct: 203 FGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQALDRM 257 >gi|285017321|ref|YP_003375032.1| 50s ribosomal protein l4 [Xanthomonas albilineans GPE PC73] gi|283472539|emb|CBA15044.1| probable 50s ribosomal protein l4 [Xanthomonas albilineans] Length = 201 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 9/192 (4%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + ++ +V+ R G K RSEV T K QKG ARH Sbjct: 12 VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVNGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG F P + +KV R A+ F + + V+D + Sbjct: 71 ALTAPIFVGGGVTFAAKP----RSFEQKVNRKMYRAAICAIFSELNRQGRLKVVDAFDLE 126 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK L+ + + LD+ +I + + L+ARNIP + + VQG++ ++ + Sbjct: 127 ASKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNIPYVEVRDVQGLDPVSLVGADTV 186 Query: 193 VLSKSAIEALED 204 V++ A++ +E+ Sbjct: 187 VITADAVKKVEE 198 >gi|289609973|emb|CBI60349.1| unnamed protein product [Sordaria macrospora] Length = 180 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIP 171 ALS + ++V+D L + KT+ L+ L +L+IDG ++ F LAARN+ Sbjct: 2 ALSSHAKAGSLVVLDGLTVENGKTQVLLGNLAKLGFGKTSLVIDGDAVENTFALAARNLR 61 Query: 172 NINLLPVQGINVYDILRCSKLVL 194 +N+LP G NVYDIL+ L + Sbjct: 62 QVNVLPAGGANVYDILKHDTLAI 84 >gi|297581435|ref|ZP_06943358.1| ribosomal protein L4 [Vibrio cholerae RC385] gi|297534273|gb|EFH73111.1| ribosomal protein L4 [Vibrio cholerae RC385] Length = 140 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGAN-----ALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL 146 ++V++N + KTK LV + + L Sbjct: 116 RLIVVENFSVEAPKTKALVAKLKEL 140 >gi|58427799|gb|AAW76836.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 184 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 1/160 (0%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G K RSEVA T K QKG ARH + + F GGG F P + +K Sbjct: 23 RAGTKAQKTRSEVAGTTKKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRK 81 Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + A+ S+ +M++D + KTK L+ + + LD+ +I + + Sbjct: 82 MYRAAICAIFSELNRQGRLMIVDAFDLEATKTKDLIEKLKGLDVGKRPLIVTEEASEHLY 141 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ARN+P + + VQG++ ++ +V++ A++ +E+ Sbjct: 142 LSARNLPYVQVRDVQGLDPVALVGADTVVITADAVKKVEE 181 >gi|124512344|ref|XP_001349305.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium falciparum 3D7] gi|23499074|emb|CAD51154.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium falciparum 3D7] Length = 568 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 10/194 (5%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRI-GCSKSKGRSEVAYTGS--KMYVQKGTGRA 73 ISV DIF L + IL + + +R + G ++ + + GS K QK +G+A Sbjct: 192 ISVPNDIFGLPIRSDILHKCYYF--YRTALAGYTERMQLYKWEWPGSTKKYRSQKKSGKA 249 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 R + + G K P + +K ++ LS KF + I V+DN + K Sbjct: 250 RMNWRKTCGRYLGVKNHPIRPFDQKTNINRKFLWKGMKILLSAKFAQDQIKVVDNFLIKS 309 Query: 134 CKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDILR 188 KTKY V R + + ++AL++ + D NF A NI ++ V+G+N+Y++L+ Sbjct: 310 HKTKYTVKYLRNILGKNCNSALLVHEGKTDVNDNFLWACANIASVKRENVEGVNIYNLLK 369 Query: 189 CSKLVLSKSAIEAL 202 +V + A++ + Sbjct: 370 YRYVVFTYKALKNI 383 >gi|198282638|ref|YP_002218959.1| 50S ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666574|ref|YP_002424831.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270] gi|226730604|sp|B7J468|RL4_ACIF2 RecName: Full=50S ribosomal protein L4 gi|226730605|sp|B5ELY0|RL4_ACIF5 RecName: Full=50S ribosomal protein L4 gi|198247159|gb|ACH82752.1| ribosomal protein L4/L1e [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518787|gb|ACK79373.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 205 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I +++ +F + + +L +V+ Q R + K R+ V G K + QKGTGRAR Sbjct: 16 IEIADGVFGVPYNEALLHQVVVAQMAGMRSANAVQKNRAAVRGGGRKPWKQKGTGRARAG 75 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG+AF + KK+ + A+R L++ + +I E ++ Sbjct: 76 SIRSPIWRGGGRAFPGGNENYTQKVNKKMWAGAMRTVLAELLRQGRLQIIQQEDFGEPRS 135 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 + N L++ G ++ N L RN P + + Q + D+L+ +++L Sbjct: 136 RLGRDWLSRAGGDNVLLVMG-EVPLNLFLGLRNFPRVGIAGWQDVGPADLLQYGRVLLDV 194 Query: 197 SAIEALEDRF 206 A L + + Sbjct: 195 EAAARLGEVY 204 >gi|313681320|ref|YP_004059058.1| LSU ribosomal protein l4p [Sulfuricurvum kujiense DSM 16994] gi|313154180|gb|ADR32858.1| LSU ribosomal protein L4P [Sulfuricurvum kujiense DSM 16994] Length = 203 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 2/159 (1%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPK 103 R + +K RS ++ G K + QKG G AR S+ F GG A GP + K Sbjct: 42 RANTASAKTRSMISGGGKKPWAQKGKGGARAGSRRSPIFVGGAIAHGPNTGRNYDQKINK 101 Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 K + LAL+ AL + + ++D + KTK F L++ +AL++ LD N Sbjct: 102 KQKKLALKCALDALAQAGKLFIVDTIEVPSGKTKDAKVLFDKLNVRDALLVKKI-LDENT 160 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA RNI + ++ +N + +V+ K+ E L Sbjct: 161 YLAFRNISSTYVVEENELNAFLAATYRSVVIEKAVWENL 199 >gi|68072025|ref|XP_677926.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498222|emb|CAH98556.1| conserved hypothetical protein [Plasmodium berghei] Length = 557 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 12/203 (5%) Query: 10 DGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRI-GCSKSKGRSEVAYTGS--KM 64 D D + I++ DIF + + IL + + +R + G ++ + + GS K Sbjct: 205 DENDNNIKFITIPNDIFGVPIRSDILHKCYYF--YRTALAGYTERMQLYKWEWPGSTKKY 262 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 QK +G+AR + + G K P + +K+ ++ LS KF + I Sbjct: 263 RSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSAKFAQDQIK 322 Query: 125 VIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQ 179 V+DN + K KTKY V R + ++AL++ + D NF A NI +I V+ Sbjct: 323 VVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIASIKRENVE 382 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N+Y++L+ +V + A++ L Sbjct: 383 GVNIYNLLKYRYVVFTYKALKNL 405 >gi|77409987|ref|ZP_00786569.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1] gi|77171403|gb|EAO74690.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1] Length = 109 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 G K + QKGTGRAR S Q+RGGG FG P + L KV +ALR Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYGYKLXXKV--VALR 109 >gi|82540371|ref|XP_724509.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23479172|gb|EAA16074.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 605 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 10/195 (5%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRI-GCSKSKGRSEVAYTGS--KMYVQKGTGR 72 I++ DIF + + IL + + +R + G ++ + + GS K QK +G+ Sbjct: 221 FITIPNDIFGVPIRSDILHKCYYF--YRTALAGYTERMQLYKWEWPGSTKKYRSQKKSGK 278 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + + G K P + +K+ ++ LS KF + I V+DN + K Sbjct: 279 ARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSAKFAQDQIKVVDNFLIK 338 Query: 133 ECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDIL 187 KTKY V R + ++AL++ + D NF A NI +I V+G+N+Y++L Sbjct: 339 SHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIASIKRENVEGVNIYNLL 398 Query: 188 RCSKLVLSKSAIEAL 202 + +V + A++ L Sbjct: 399 KYRYVVFTYKALKNL 413 >gi|13357792|ref|NP_078066.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762012|ref|YP_001752315.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920440|ref|ZP_02931752.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701899|ref|ZP_02971552.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|46577295|sp|Q9PQQ9|RL4_UREPA RecName: Full=50S ribosomal protein L4 gi|189042890|sp|B1AIM1|RL4_UREP2 RecName: Full=50S ribosomal protein L4 gi|11276689|pir||A82915 ribosomal protein L4 UU232 [imported] - Ureaplasma urealyticum gi|6899202|gb|AAF30641.1|AE002122_10 ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827589|gb|ACA32851.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902892|gb|EDT49181.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700632|gb|EDU18914.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 211 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNIN 174 ++ ++ N + TK +V +L N +I+D N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIVDNFS---NIKKSTNNLQKVT 177 Query: 175 LLPVQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 178 TKLWYQVSVRDLMHANVVVVAEEAF 202 >gi|325068032|ref|ZP_08126705.1| 50S ribosomal protein L4 [Actinomyces oris K20] Length = 123 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC-KTKYLVTRFRALDLS 149 GP P PKK+++ ALR ALSD+ + + VI V+ TK + R L Sbjct: 3 GPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFVTTTVPSTKNALVALRNLTDR 62 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 AL+I Q D + +L+ RN P ++L +N YD+L+ +V + S ++A Sbjct: 63 KALVIVDRQDDLS-RLSLRNAPEAHVLWADQLNTYDVLKSDDVVFTASGLDAF 114 >gi|21702612|gb|AAM76008.1|AF481103_18 ribosomal protein L4 [Candidatus Tremblaya princeps] Length = 198 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH--ALP 102 R CS + R EV+++ K + QKG GRAR S +RGGG+AF P + Sbjct: 35 RPSCSTQRSRGEVSHSTRKPWRQKGLGRARAGMTSSPLWRGGGRAF-PSRTAASRLVRIN 93 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 K++ L+L + + ++D L KT+ L R + S +++ +L N Sbjct: 94 KRMARLSLHVQIVRAARQGRLAIVDALRIAPSKTREL--RCASAQPSTMVVVGKSELCYN 151 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 AARN+ ++++ +GI+ S++V+++ A E Sbjct: 152 AYRAARNVSGLSIVAQRGISPRAFHLSSRIVMTRKAAE 189 >gi|237833509|ref|XP_002366052.1| 50S ribosomal protein L4, putative [Toxoplasma gondii ME49] gi|211963716|gb|EEA98911.1| 50S ribosomal protein L4, putative [Toxoplasma gondii ME49] Length = 625 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK--MYVQKGTGR 72 G + + DIF L + IL R W R G ++ + + GSK + Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCY-WFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ D NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|302308292|ref|NP_985172.2| AER316Cp [Ashbya gossypii ATCC 10895] gi|299789385|gb|AAS52996.2| AER316Cp [Ashbya gossypii ATCC 10895] Length = 269 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + V + + ++ IL R + +++ KR+G S RSE Y+ K+ QKGTG Sbjct: 52 EPVSFMPVPMSVLGVPLRRDILWRAVVYENDNKRVGSSNPPSRSENGYSRRKLLPQKGTG 111 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 RAR + GGG+A P LP+K+ S A ALS ++ ++ I Sbjct: 112 RARVGDANSPTRHGGGRAHARSAPNDYTTKLPRKIYSQAFSIALSHQYRQGNMYAI 167 >gi|255717917|ref|XP_002555239.1| KLTH0G04642p [Lachancea thermotolerans] gi|238936623|emb|CAR24802.1| KLTH0G04642p [Lachancea thermotolerans] Length = 254 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 25/195 (12%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL + + +++ KR+G S GRSE Y+ K+ QKG+G+AR + G +A Sbjct: 55 ILWKAVVYENDNKRVGSSNPPGRSENGYSRRKLLPQKGSGKARAGDANSPTRHNGARALA 114 Query: 92 -PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL-VTRFRALDLS 149 P LP+KV S A +ALS ++ ++ +I S C+T L V L S Sbjct: 115 RSAPNDYTTKLPQKVYSQAFINALSYQYRRGNLFIIGGTHSL-CETHDLDVNELEVLPTS 173 Query: 150 -----NALIIDGCQLDRNFQ----LAARNIP-------------NINLLPVQGINVYDIL 187 L+ + + Q L N P N+N++ + ++V DIL Sbjct: 174 LENDDGELVFEKFLQEHELQKQNLLFVINAPRGGLFRYSEPFKENVNIVQKEFVDVNDIL 233 Query: 188 RCSKLVLSKSAIEAL 202 + ++ + A+E L Sbjct: 234 KARRIFIELEALEYL 248 >gi|221508042|gb|EEE33629.1| 50S ribosomal protein L4, putative [Toxoplasma gondii VEG] Length = 625 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK--MYVQKGTGR 72 G + + DIF L + IL R W R G ++ + + GSK + Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCY-WFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ D NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|221486254|gb|EEE24515.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 625 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK--MYVQKGTGR 72 G + + DIF L + IL R W R G ++ + + GSK + Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCY-WFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ D NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|154283117|ref|XP_001542354.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150410534|gb|EDN05922.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 142 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 83 FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KECKTKYLV 140 RGGG A GP P LPKKV LA R ALS ++ ++++++ ++ +E +L Sbjct: 2 LRGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLT 61 Query: 141 TRFRALD----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 F +LII + +R F+ A+ + +L + ++V D+L +L++ K Sbjct: 62 EVFEKNQWGKYFGRSLIITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEK 121 Query: 197 SAIEAL 202 +A++ + Sbjct: 122 TALDRM 127 >gi|50288489|ref|XP_446674.1| hypothetical protein [Candida glabrata CBS 138] gi|49525982|emb|CAG59601.1| unnamed protein product [Candida glabrata] Length = 285 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E I VS ++ +L ++ IL + + +++ ++R+G S GRS+ ++ K+ QKG+G Sbjct: 50 EPNSFIPVSANVLSLPLRRDILWQAVVYENDKRRVGASNPPGRSDKGFSRKKLLPQKGSG 109 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 +AR + GG+A P L KKV S A ALS ++ ++ VI Sbjct: 110 KARVGDANSPIRHNGGRALARTAPNDYSTELNKKVYSTAFFTALSHQYKLGNLFVI 165 >gi|171692683|ref|XP_001911266.1| hypothetical protein [Podospora anserina S mat+] gi|170946290|emb|CAP73091.1| unnamed protein product [Podospora anserina S mat+] Length = 326 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 25/188 (13%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G +++K R EVA + K+ QKG+GRAR +K RGGGK+ GP L +K Sbjct: 106 RQGTAQAKTRWEVAGSHRKVRPQKGSGRARVGNKQSPLQRGGGKSHGPRNRDFGTKLNRK 165 Query: 105 VRSLALRHALSDKFCSNDIMVI-----------------DNLVSKECK----TKYLVTRF 143 V LA R ALS ++ +++V D L+++E + KY+ Sbjct: 166 VYDLAWRTALSYRYRRGELIVTEDGLDLPLPEDFLQQAQDGLLTRELEDAFIEKYVGEML 225 Query: 144 RALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 A+ A I G + F N L ++ ++V D+L ++V+ S + Sbjct: 226 GAMQWGKAHGRTTFITGEERMNLFTAMGVAGENGRALELEDVDVKDLLETGRIVVESSVL 285 Query: 200 EALEDRFK 207 + + R + Sbjct: 286 KEMIKRHR 293 >gi|50553556|ref|XP_504189.1| YALI0E20493p [Yarrowia lipolytica] gi|49650058|emb|CAG79784.1| YALI0E20493p [Yarrowia lipolytica] Length = 271 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR-HSS 77 V+ + + + +L R + +++ R+R+G S GR ++ Y+ K++ QKG G+AR + Sbjct: 61 VTSQMLGAQVHKDLLWRAVVYEADRQRVGASNPPGREQMGYSTRKLHKQKGMGKARVGDA 120 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 S ++ +GG P LPK+V + A+R AL+ ++ + V+D Sbjct: 121 GSPTRTQGGFALDRNAPNKMATGLPKQVYASAIRAALTSQYQEGRLFVVDG 171 >gi|185178723|ref|ZP_02964539.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024290|ref|ZP_02996980.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518685|ref|ZP_03004113.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524431|ref|ZP_03004451.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867658|ref|ZP_03079660.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209554081|ref|YP_002284631.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550540|ref|ZP_03771489.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551132|ref|ZP_03772078.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226731441|sp|B5ZB41|RL4_UREU1 RecName: Full=50S ribosomal protein L4 gi|184209322|gb|EDU06365.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018963|gb|EDU57003.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997750|gb|EDU66847.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659694|gb|EDX53074.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660715|gb|EDX53970.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209541582|gb|ACI59811.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378947|gb|EEH01312.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379694|gb|EEH02056.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 211 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 5/203 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 ++ ++ N + TK +V +L N L++ N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADHFS-NIKKSTNNLQKVTTK 179 Query: 177 PVQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 180 LWYQVSVRDLMHANVVVVAEEAF 202 >gi|183508831|ref|ZP_02958283.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675798|gb|EDT87703.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 211 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 9/205 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNIN 174 ++ ++ N + TK +V +L N +I D N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADNFS---NIKKSTNNLQKVT 177 Query: 175 LLPVQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 178 TKLWYQVSVRDLMHANVVVVAEEAF 202 >gi|221103288|ref|XP_002168893.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 426 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECKTKYLVTRFR 144 GG + GP P + LP KVR + LR ALS KF D+ V+++ + E VT Sbjct: 248 GGVSGGPKPKDYSYELPFKVRRMGLRTALSCKFAQGDLTVVEDYNNLTETNFSDAVT--- 304 Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 +L L ++L +DG + D L + I+ P ++VY +L SKLVLS A+ LE+ Sbjct: 305 SLSLQSSLFVDGFENDYLDSLVS-GFEKIDFKPALLLHVYGMLIRSKLVLSLQAVRILEE 363 Query: 205 RF 206 + Sbjct: 364 KL 365 >gi|190572945|ref|YP_001970790.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia K279a] gi|194364535|ref|YP_002027145.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia R551-3] gi|254523850|ref|ZP_05135905.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14] gi|226730728|sp|B4SKW4|RL4_STRM5 RecName: Full=50S ribosomal protein L4 gi|226730729|sp|B2FQ46|RL4_STRMK RecName: Full=50S ribosomal protein L4 gi|190010867|emb|CAQ44476.1| putative 50S ribosomal protein L4 [Stenotrophomonas maltophilia K279a] gi|194347339|gb|ACF50462.1| ribosomal protein L4/L1e [Stenotrophomonas maltophilia R551-3] gi|219721441|gb|EED39966.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14] Length = 201 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 12 VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + + F GGG F P + +K A+ LS+ + ++++ + T Sbjct: 71 ALTAPIFVGGGVTFAAKPRSFEQKVNRKQYRAAMCAILSELNRQGRLTIVESFDVEVTNT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L++ +I + + L+ARN+P + + VQG++ ++ +V++ Sbjct: 131 KGLIAKLAGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVSLVGADTVVITA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKKVEE 198 >gi|254292179|ref|ZP_04962949.1| ribosomal protein L4 [Vibrio cholerae AM-19226] gi|150421908|gb|EDN13885.1| ribosomal protein L4 [Vibrio cholerae AM-19226] Length = 102 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 60/96 (62%), Gaps = 1/96 (1%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 A++ LS+ ++V++N + KTK LV + + L+L++ LI+ G ++D N LAAR Sbjct: 5 AMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLFLAAR 63 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N+ +++ V GI+ ++ K++++ +A++ +E+ Sbjct: 64 NLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEE 99 >gi|319787924|ref|YP_004147399.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1] gi|317466436|gb|ADV28168.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1] Length = 201 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 1/188 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+D+F + ++ +V+ R G R+EV+ T K QKG ARH Sbjct: 12 LSVSDDVFGRDFSEDLVHQVVVAYRNAGRAGTKAQLTRAEVSGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + + F GGG F P + +K+ A+ LS+ + V+++ KT Sbjct: 71 ALTAPIFVGGGVTFAAKPRSFAQKVNRKMYRAAISSILSELNRQGRLKVVESFDIDAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + +L +I N L+ARN+P + + VQG++ ++ ++++ Sbjct: 131 KGLVEKLAGYELGKRPLIVTEDASENLFLSARNLPYVQVRDVQGLDPVALVGADSVLITA 190 Query: 197 SAIEALED 204 A++ +E+ Sbjct: 191 DAVKKVEE 198 >gi|320592223|gb|EFX04662.1| 50S ribosomal protein l4 [Grosmannia clavigera kw1407] Length = 339 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 47/84 (55%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R +V + KM QKGTG AR S+ RGGGK+FGP P L +K Sbjct: 110 RQGTASTKTRYDVHGSHRKMRPQKGTGSARLGSRQSPLIRGGGKSFGPQPRDFGTDLNRK 169 Query: 105 VRSLALRHALSDKFCSNDIMVIDN 128 V A R ALS ++ +++V ++ Sbjct: 170 VYDRAWRTALSYRYRRGELVVCED 193 >gi|320581244|gb|EFW95465.1| 60S ribosomal protein YmL6, mitochondrial precursor [Pichia angusta DL-1] Length = 262 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 22/177 (12%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR-HSSKSVSQFRGGGKAFGPVPIIGVHALP 102 KR+G S GRS+ ++ K+ QKG+GRAR + S +FRG P LP Sbjct: 75 KRVGASNPPGRSDHKFSRHKLLPQKGSGRARVGDANSPIRFRGAYALARTAPNDFSTDLP 134 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDN--------LVSKECKTKYLVTRFRALDLS----- 149 +KV +A R ALS + + + V+ L + + RALD Sbjct: 135 QKVYDMAYRIALSSAYKAGKLFVVGEHEAAGSELLPGDSFNLELTHSHPRALDTFVAKHG 194 Query: 150 ----NALIIDGCQLDRNFQLA---ARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 N L I G + D LA ++ + +L + + V D+L+ +LV+SK A+ Sbjct: 195 FSKLNVLFIPG-EYDPEANLAKAVSKYSDKVRILRKEDVEVRDLLKADRLVVSKDAL 250 >gi|70952888|ref|XP_745581.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525950|emb|CAH77561.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 458 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Q +G+ + S+ ++G K P+ + +K+ ++ LS KF + Sbjct: 162 NKFPCQNKSGKDSNDSEINMWYQGTPKN-HPIRPFDQTKINRKLLWKGMKILLSAKFAQD 220 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLL 176 I V+DN + K KTKY V R + ++AL++ + D NF A NI +I Sbjct: 221 QIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIASIKRE 280 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V+G+N+Y++L+ +V + A++ L Sbjct: 281 NVEGVNIYNLLKYRYVVFTYKALKNL 306 >gi|256071067|ref|XP_002571863.1| 50S ribosomal protein L4 [Schistosoma mansoni] gi|238657011|emb|CAZ28093.1| 50S ribosomal protein L4, putative [Schistosoma mansoni] Length = 409 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-TGSKMYVQKGTGRA 73 G+I + DIFA+ P+ ++ + L WQ+ + I R+E++Y T K + QKGTG+A Sbjct: 101 GMIDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELSYGTRKKPWPQKGTGKA 160 Query: 74 RHSSKSVSQFRGGGKAFGP 92 RH ++ + GG+ GP Sbjct: 161 RHGNRRTHIWLTGGQCKGP 179 >gi|310794407|gb|EFQ29868.1| ribosomal protein L4/L1 family protein [Glomerella graminicola M1.001] Length = 326 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 25/183 (13%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + +K R EV + K++ QKGTGRAR +K RGGG + GP P L +K Sbjct: 114 RQGTASTKTRWEVRGSHRKLHPQKGTGRARAGTKQSPIRRGGGVSHGPKPRDFSTRLNRK 173 Query: 105 VRSLALRHALSDKF-------CSN--------------DIMVIDNLVSKECKTKYLVTRF 143 V +A R ALS ++ C + D + ++ E + K+++ Sbjct: 174 VYDVAWRTALSYRYRRGQLVVCEDGMELPLPLDFTKLADAGAVGPQIAAEYRRKWMMQVL 233 Query: 144 RALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 A + A L + Q R + L V ++V D+L ++V+ ++A+ Sbjct: 234 EANEWGKAHGRTLFVTDGQRPRLWDTMEAAGDQGRCLDVNEVDVKDLLEEGRVVIERTAL 293 Query: 200 EAL 202 + Sbjct: 294 REM 296 >gi|26554464|ref|NP_758398.1| 50S ribosomal protein L4 [Mycoplasma penetrans HF-2] gi|46577268|sp|Q8EUB4|RL4_MYCPE RecName: Full=50S ribosomal protein L4 gi|26454474|dbj|BAC44802.1| ribosomal protein L4 [Mycoplasma penetrans HF-2] Length = 213 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK--KVRSLALR 111 ++EV G K Y QK TGRAR S + GGG+AFGP P + L + K LA + Sbjct: 57 KAEVRGGGRKPYKQKHTGRARQGSIRNPHYVGGGRAFGPSPEKN-YTLKQNSKAYKLAFQ 115 Query: 112 HALSDKFCSNDI-MVIDNLVSKECKTKYLVTRFRALDLSNA---LIIDGCQLDRNFQLAA 167 A++ K + ++++ + KE TK + + + N +I+ + NF + Sbjct: 116 SAMTLKLNEQGLNLLVNKIDMKEPSTKTISKMLKKVSYENKKVLFVINDK--NENFLKSC 173 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NI + ++V DIL V+ + A + + + F Sbjct: 174 KNIQKVTSKMWNQVSVRDILNSDIAVIQEDAFDKISEVF 212 >gi|229077412|ref|ZP_04210064.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2] gi|228705888|gb|EEL58222.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2] Length = 78 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%) Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK ++ + L + +I + + +L+ARNIP + ++ G+NV D+L KL++ Sbjct: 6 KTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIM 65 Query: 195 SKSAIEALED 204 +K+A+E +E+ Sbjct: 66 TKAAVEKVEE 75 >gi|325118901|emb|CBZ54453.1| putative 50S ribosomal protein L4 [Neospora caninum Liverpool] Length = 766 Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK--MYVQKGTGR 72 G + + DIF L + IL R W R G ++ + + GSK + Q+ +GR Sbjct: 376 GCVVLPNDIFGLALRPDILYRCY-WFYRRAIAGWTERMQLFKWEWPGSKRKLRPQQRSGR 434 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 435 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQIKVVDHFNLQ 494 Query: 133 ECKTKYLVTRFRAL---DLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R + +AL++ D NF+ A +I + V+G+NVY++L Sbjct: 495 SHKTKHCVRHLRRILGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGVNVYNLL 554 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 555 KYRQLVITEKALLKL 569 >gi|294944163|ref|XP_002784118.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897152|gb|EER15914.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 497 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 26/207 (12%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E+ G I V IFA ++ IL W GC + + + G+ Sbjct: 117 EEIGSIIVPNSIFAEPIRKDILYFTYWWHR-----GCMAGYQQDMQLFK----WEWPGSN 167 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL-----------ALRHALSDKFCS 120 + S K++ + R G + P GV ++P++ R +L+ LS KF Sbjct: 168 KKARSHKNIGKSRMGRRK-APGKYDGVFSIPQRPREWRQGELKRRVWKSLKMMLSAKFAQ 226 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIID--GCQLDRNFQLAARNIPNINL 175 +I V+D+ KT+++ R L ++AL+I ++ NF+ +I + Sbjct: 227 GEITVVDSFNVSTHKTRHVAAHLRRLLGRHCNSALLIHVGTSDVNDNFRWGTAHIAQVRR 286 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 V+G++ Y++L+ ++V+++ A+ L Sbjct: 287 EDVEGVSTYNLLKYRQIVITEQALHKL 313 >gi|77409634|ref|ZP_00786307.1| ribosomal protein L4 [Streptococcus agalactiae COH1] gi|77171757|gb|EAO74953.1| ribosomal protein L4 [Streptococcus agalactiae COH1] Length = 113 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%) Query: 99 HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158 + L +KVR LAL+ S K + + ++NL KT + AL + + +++ + Sbjct: 5 YKLLQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASVLSALSIDSKVLVILEE 64 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 + L+ARN+PN+ + +V DI+ KL+++K AI +E Sbjct: 65 GNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAISTIE 109 >gi|289811596|ref|ZP_06542225.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR S +R GG F P + KK+ AL+ LS+ + ++V+ Sbjct: 2 QKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVV 61 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163 + + KTK L + + + L + LII G +LD N Sbjct: 62 EKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENL 97 >gi|71902235|ref|ZP_00684242.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1] gi|71728009|gb|EAO30223.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1] Length = 202 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VS+ +F + + ++ +V+ R G K RS+V+ T K QKG ARH Sbjct: 12 LPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG AF P + +KV R A+ F + + V+D + Sbjct: 71 ALTAPIFVGGGVAFAAKP----RSFSQKVNRKQYRSAICSIFSELNRQGRLKVVDAFDVE 126 Query: 133 ECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + ++L+L ++L+I ++ L++RN+P +++ VQ ++ ++ Sbjct: 127 VSKTKAFAEKIKSLELVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQALDPVALVGSDV 186 Query: 192 LVLSKSAIEALED 204 +VL+ A++ +E+ Sbjct: 187 VVLTVGAVKKIEE 199 >gi|149234672|ref|XP_001523215.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL YB-4239] gi|146453004|gb|EDK47260.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL YB-4239] Length = 297 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 38/189 (20%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH----A 100 R+G + +S+ Y+G K+ QKGTGRAR + + KA I G H Sbjct: 109 RVGSNYVTLKSDKPYSGRKLRPQKGTGRARLGTGNSPHLDNEVKAHA---IKGPHDWSTD 165 Query: 101 LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY--------LVTRFRALDLSNAL 152 L KK A++ AL+ ++ ++ V N EC+ K V+ R LS Sbjct: 166 LNKKQYDQAMQVALTSQYKQGNLFVTQN----ECQFKQSNLEVAQSFVSTHRLEQLSMLF 221 Query: 153 IIDG-----CQLDRNFQLAARNIPNIN--------------LLPVQGINVYDILRCSKLV 193 I DG Q R F ++ + + N++ +L + + V DIL+ +++ Sbjct: 222 ITDGERENLSQSMRQFFISDKKLENLSKPEKIKALRKLKGRVLSKEEVQVRDILKANRVF 281 Query: 194 LSKSAIEAL 202 + K A+E L Sbjct: 282 VEKPALEWL 290 >gi|313200082|ref|YP_004038740.1| 50S ribosomal protein L4/l1e [Methylovorus sp. MP688] gi|312439398|gb|ADQ83504.1| ribosomal protein L4/L1e [Methylovorus sp. MP688] Length = 98 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 +R LS+ + + VI+ V + KTK LV + + L +++ D N L+ARN Sbjct: 1 MRSILSELVRQDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARN 60 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 +PN+ ++ Q + ++R +V +K+A++ LE+ Sbjct: 61 LPNVLVVEAQYADPVSLVRFPNVVATKAAVKKLEE 95 >gi|301500960|ref|YP_003795425.1| ribosomal protein L4 [Alveolata sp. CCMP3155] gi|300069506|gb|ADJ66613.1| ribosomal protein L4 [Chromerida sp. RM11] Length = 236 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 53 GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLAL 110 GRS ++ + K++ QKGTGRAR SK+ ++GGG FGP G KK+ AL Sbjct: 67 GRSSISGSKRKLWRQKGTGRARAGSKTGPLWKGGGVVFGPRGERTSGTQKRNKKLWKAAL 126 Query: 111 RHALSDKFCSNDIMVI 126 + L DK +++++ Sbjct: 127 NYVLYDKLKHENLVLM 142 >gi|71276485|ref|ZP_00652760.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon] gi|170729701|ref|YP_001775134.1| 50S ribosomal protein L4 [Xylella fastidiosa M12] gi|226731448|sp|B0U5A8|RL4_XYLFM RecName: Full=50S ribosomal protein L4 gi|71162662|gb|EAO12389.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon] gi|167964494|gb|ACA11504.1| 50S ribosomal protein L4 [Xylella fastidiosa M12] Length = 204 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 12/195 (6%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VS+ +F + + ++ +V+ R G K RS+V+ T K QKG ARH Sbjct: 12 LPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG AF P + +KV R A+ F + + V+D + Sbjct: 71 ALTAPIFVGGGVAFAAKP----RSFSQKVNRKQYRSAICSIFSELNRQGRLKVVDAFDVE 126 Query: 133 ECKTKYLVTRFRALD---LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK + ++L+ + ++L+I ++ L++RN+P +++ VQ ++ ++ Sbjct: 127 VSKTKVFAEKIKSLEVVGVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQALDPVALVGS 186 Query: 190 SKLVLSKSAIEALED 204 +VL+ A++ +E+ Sbjct: 187 DVVVLTVGAVKKIEE 201 >gi|323164883|gb|EFZ50674.1| 50S ribosomal protein L4 [Shigella sonnei 53G] Length = 102 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 AL+ LS+ + ++V++ + KTK L + + + L + LII G +LD N LAAR Sbjct: 5 ALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAAR 63 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 64 NLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEE 99 >gi|28198354|ref|NP_778668.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1] gi|182680995|ref|YP_001829155.1| 50S ribosomal protein L4 [Xylella fastidiosa M23] gi|46577239|sp|Q87E81|RL4_XYLFT RecName: Full=50S ribosomal protein L4 gi|226731447|sp|B2I8H0|RL4_XYLF2 RecName: Full=50S ribosomal protein L4 gi|28056424|gb|AAO28317.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1] gi|182631105|gb|ACB91881.1| ribosomal protein L4/L1e [Xylella fastidiosa M23] gi|307579464|gb|ADN63433.1| 50S ribosomal protein L4 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 202 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VS+ +F + + ++ +V+ R G K RS+V+ T K QKG ARH Sbjct: 12 LPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG AF P + +KV R A+ F + + V+D + Sbjct: 71 ALTAPIFVGGGVAFAAKP----RSFSQKVNRKQYRSAICSIFSELNRQGRLKVVDAFDVE 126 Query: 133 ECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KT+ + ++L+ + ++L+I ++ L++RN+P +++ VQ ++ ++ Sbjct: 127 VSKTRVFAEKIKSLEVVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQALDPVALVGSDV 186 Query: 192 LVLSKSAIEALED 204 +VL+ A++ +E+ Sbjct: 187 VVLTVGAVKKIEE 199 >gi|213584601|ref|ZP_03366427.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 95 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%) Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR S +R GG F P + KK+ AL+ LS+ + ++V+ Sbjct: 2 QKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVV 61 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDG 156 + + KTK L + + + L + LII G Sbjct: 62 EKFSVEAPKTKLLAQKLKDMALEDVLIITG 91 >gi|39943994|ref|XP_361534.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15] gi|145014730|gb|EDJ99298.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15] Length = 342 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 42/82 (51%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 R G + SK + +V + K QKGTG AR K RGGGK+ GP P + K Sbjct: 124 RQGTASSKTKWDVHGSHRKQAPQKGTGNARVGWKQSPLRRGGGKSHGPHPRDFSTRMNHK 183 Query: 105 VRSLALRHALSDKFCSNDIMVI 126 V LA R ALS ++ ++ V+ Sbjct: 184 VYDLAWRTALSYRYRRGELFVV 205 >gi|260942525|ref|XP_002615561.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720] gi|238850851|gb|EEQ40315.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720] Length = 244 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%) Query: 43 RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHAL 101 + R+G + + ++ K++ QKGTGRAR + G KA G P L Sbjct: 65 KARVGSGYVPTKGDKWFSNRKLHPQKGTGRARVGDANSPIRDNGLKAHGIKAPHDWSTRL 124 Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF----------RALDLS-- 149 P K+ S A + A SD++ + + VI + E ++ + ++ A DL Sbjct: 125 PSKIYSRAFQTAFSDQYRNGKLFVIGGAQANEGESNVVDFKYEYPDQMRQFVEAHDLEHL 184 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + L I Q D + A ++L + + V D+L+ +++ + +SA+ +++ Sbjct: 185 HLLFITDGQRDNLLKATADMGKKCDVLVKEAVEVRDLLKANRIFIEQSALNWFVSQYE 242 >gi|269866679|ref|XP_002652355.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220062675|gb|EED41702.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 160 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Query: 52 KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 K R+ V G K + QKGTGRAR S +RGGG+AF + KK+ + A+R Sbjct: 12 KNRAAVRGGGRKPWKQKGTGRARAGSIRSPIWRGGGRAFPGGNENYTQKVNKKMWAGAMR 71 Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 L++ + +I E +++ N L++ G ++ N L RN P Sbjct: 72 TVLAELLRQGRLQIIQQEDFGEPRSRLGRDWLSRAGGDNVLLVMG-EVPLNLFLGLRNFP 130 Query: 172 NINLLPVQGINVYDILRCSK 191 + + + + D+L ++ Sbjct: 131 RVGIAGWKDVGPADLLNMAE 150 >gi|146422131|ref|XP_001487007.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC 6260] gi|146388128|gb|EDK36286.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 92/199 (46%), Gaps = 12/199 (6%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E K + + F ++ IL + +++ R+G +S+ Y+ K++ QKGTG Sbjct: 37 EPKTFVPLPASFFDAPFRRDILWSAVVYEADGARVGSGYVPTKSDKLYSNRKLHPQKGTG 96 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 RAR + KA G P LP+K+ + A++ A+SD++ +I ++++ V Sbjct: 97 RARVGDANSPIRDNEIKAHGIKAPHDWSTDLPRKIYNKAVKTAISDQYRKGNIFIVEDGV 156 Query: 131 SKECKTKYLVTRF---RALDLSNALIIDGCQ----LDRNFQLAARNIPNINLLPVQGINV 183 + + +F +LD + L I Q L+ L + +++ + + V Sbjct: 157 DFKYAHQDATKQFVEAHSLDKLHLLFITNEQRTNLLESTEYLGTKG----DVIVKEAVQV 212 Query: 184 YDILRCSKLVLSKSAIEAL 202 D+L+ +++ + A++ + Sbjct: 213 RDLLKANRIYIEADALKWM 231 >gi|15837755|ref|NP_298443.1| 50S ribosomal protein L4 [Xylella fastidiosa 9a5c] gi|46396661|sp|Q9PE75|RL4_XYLFA RecName: Full=50S ribosomal protein L4 gi|9106117|gb|AAF83963.1|AE003950_13 50S ribosomal protein L4 [Xylella fastidiosa 9a5c] Length = 202 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 10/193 (5%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + VS+ +F + + ++ +++ R G K RS+V+ T K QKG ARH Sbjct: 12 LPVSDVVFGREFSEALVHQIVVAYRNTARSGTKAQKSRSQVSGTTKKSKKQKGG-GARHG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND----IMVIDNLVSK 132 + + F GGG AF P + +KV R A+ F + + V+D + Sbjct: 71 ALTAPIFVGGGVAFAAKP----RSFSQKVNRKQYRSAICSIFSELNRQGRLKVVDAFDVE 126 Query: 133 ECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK + ++L++ + L+I + L++RN+P +++ VQ ++ ++ Sbjct: 127 VSKTKVFAEKIKSLEVVGSRLLIVSDGISECLSLSSRNLPCVDVRSVQALDPVALVGSDV 186 Query: 192 LVLSKSAIEALED 204 +VL+ A++ +E+ Sbjct: 187 VVLTVGAVKKIEE 199 >gi|254449313|ref|ZP_05062758.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015] gi|198261072|gb|EDY85372.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015] Length = 101 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 ++V++++ KTK LV + + ++L + L++ D N LAARN+ ++++ V G++ Sbjct: 18 LVVVEDITVDAPKTKQLVGKLKEMELESVLLVSETD-DINLYLAARNLNSVDVTDVAGLS 76 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 D++R K++++ +++ +E++ K Sbjct: 77 PVDLIRFDKVLITVDSLKRVEEQLK 101 >gi|50425441|ref|XP_461314.1| DEHA2F22330p [Debaryomyces hansenii CBS767] gi|49656983|emb|CAG89715.1| DEHA2F22330p [Debaryomyces hansenii] Length = 255 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 15/204 (7%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + F ++ L + +++ R R+G + + Y+ K++ QKGTG Sbjct: 41 EPHSFVPLPTQFFDAPLRRDFLWSAVVYEADRARVGSGYVITKGDKLYSNRKLHPQKGTG 100 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 RAR + KA G P LP KV S A + ALSD++ + + +I Sbjct: 101 RARTGDANSPIRDNEVKAHGVKAPHDWSTRLPSKVYSKAFQTALSDQYRNGKVFIIGGDK 160 Query: 131 SKECKTKYLVTRFRA--------------LDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 S + +V F+ LD + L I Q D ++L Sbjct: 161 SATKASDDVVADFKYDHPEATRQFVEAHDLDRLSLLFITDAQRDNLINSTEYVGKKADVL 220 Query: 177 PVQGINVYDILRCSKLVLSKSAIE 200 + + V DIL+ +++ + A++ Sbjct: 221 IKEAVEVRDILKANRIYIEAPALQ 244 >gi|310765597|gb|ADP10547.1| 50S ribosomal protein L4 [Erwinia sp. Ejp617] Length = 102 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 AL+ LS+ + ++V++ + KTK LV + + + L + LII G +L+ N LAAR Sbjct: 5 ALKSILSELVRQDRLIVVEKFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLFLAAR 63 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N+ +++ I+ ++ K+V++ A++ +E+ Sbjct: 64 NLYKVDVRDAAAIDPVSLIAFDKVVMTADAVKQVEE 99 >gi|213646336|ref|ZP_03376389.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 117 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARS 70 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 S +R GG F P + KK+ AL+ LS+ Sbjct: 71 GSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSE 111 >gi|284116244|ref|ZP_06386717.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3] gi|283829528|gb|EFC33883.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3] Length = 98 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAAR 168 ++ ALS K + +++V+ +L E KTK + + L + L + G D F+ A R Sbjct: 1 MQSALSSKMAAGELLVLADLSLPEPKTKLMAKAVKQLGATGPVLFVVGRDHDAVFR-ATR 59 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N+ + +P + + VYD+LR LV+ K + +++ Sbjct: 60 NLAQVKAVPPEELTVYDVLRYQTLVVLKDELPNVQE 95 >gi|328351776|emb|CCA38175.1| 50S ribosomal protein L4 [Pichia pastoris CBS 7435] Length = 256 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 20/215 (9%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E V+ +S + ++ +L + + + R+G S GR E ++ K+ QKG+G Sbjct: 40 EPHTVLPISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSG 99 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126 RAR + G +A P LP KV + A R ALS + + +I Sbjct: 100 RARVGDANSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCS 159 Query: 127 ---------DNLVSKECKTKYLVTRFRALD----LSNALIIDGCQLDRNFQLA--ARNIP 171 N++ K + F+A+ L+ I D +N A A N Sbjct: 160 SLIPFNRGDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDD 219 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+LL + + V +L+ +++ + +++++ F Sbjct: 220 QISLLDKENVEVRHLLKANRVFIDQASLQFFAKEF 254 >gi|254569220|ref|XP_002491720.1| hypothetical protein [Pichia pastoris GS115] gi|238031517|emb|CAY69440.1| hypothetical protein PAS_chr2-1_0890 [Pichia pastoris GS115] Length = 261 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 20/215 (9%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E V+ +S + ++ +L + + + R+G S GR E ++ K+ QKG+G Sbjct: 45 EPHTVLPISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSG 104 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126 RAR + G +A P LP KV + A R ALS + + +I Sbjct: 105 RARVGDANSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCS 164 Query: 127 ---------DNLVSKECKTKYLVTRFRALD----LSNALIIDGCQLDRNFQLA--ARNIP 171 N++ K + F+A+ L+ I D +N A A N Sbjct: 165 SLIPFNRGDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDD 224 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+LL + + V +L+ +++ + +++++ F Sbjct: 225 QISLLDKENVEVRHLLKANRVFIDQASLQFFAKEF 259 >gi|86152290|ref|ZP_01070501.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 260.94] gi|85840779|gb|EAQ58030.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 260.94] Length = 98 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 +AL AL+DK + D+L + KTK T + L + +ALI+ LD LA Sbjct: 1 MALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAY 59 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 60 RNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 94 >gi|226329481|ref|ZP_03804999.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198] gi|225202667|gb|EEG85021.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198] Length = 105 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + +G ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTG Sbjct: 7 DAQGALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTG 66 Query: 72 RARHSSKSVSQFRGGGKAFGPVP 94 RAR S +R GG +F P Sbjct: 67 RARSGSIKSPIWRSGGVSFAAKP 89 >gi|313622213|gb|EFR92739.1| 50S ribosomal protein L4 [Listeria innocua FSL J1-023] Length = 91 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINL 175 K ++V++ L KTK + + + + ALI+ + N +L+ARN+ I + Sbjct: 1 KVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITV 59 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204 +P + I+V ++ + KL+++K+A+E +E+ Sbjct: 60 IPAESISVLEVAKHDKLIITKAAVEKVEE 88 >gi|165940381|ref|ZP_02228894.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str. IP275] gi|165911690|gb|EDR30354.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str. IP275] Length = 92 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ Sbjct: 9 LIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGID 67 Query: 183 VYDILRCSKLVLSKSAIEALED 204 ++ K+V++ A++ +E+ Sbjct: 68 PVSLIAFDKVVMTADAVKQVEE 89 >gi|315304953|ref|ZP_07875045.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596] gi|313626678|gb|EFR95719.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596] Length = 86 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK + + + + ALI+ + N +L+ARN+ I ++P + I Sbjct: 2 LVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPAESI 60 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 +V ++ + KL+++K+A+E +E+ Sbjct: 61 SVLEVAKHDKLIITKAAVEKVEE 83 >gi|261885690|ref|ZP_06009729.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 119 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 KK + LAL AL+DK + + +DN+ KTK ++ L + +ALII +LD Sbjct: 17 KKQKRLALEFALNDKGANGKLYAVDNIQISSGKTKDAISISNKLGVRDALIIKN-ELDAK 75 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 LA +N+ N ++ +N Y + S ++ K+A++++ Sbjct: 76 TLLAIKNLANCYVIDASEVNAYLVSVYSAVIAEKAALQSI 115 >gi|315283849|ref|ZP_07871906.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120] gi|313606526|gb|EFR83353.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-208] gi|313612508|gb|EFR86593.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120] Length = 90 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK + + + + ALI+ + N +L+ARN+ I ++P + I Sbjct: 6 LVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPAESI 64 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 +V ++ + KL+++K+A+E +E+ Sbjct: 65 SVLEVAKHDKLIITKAAVEKVEE 87 >gi|213646525|ref|ZP_03376578.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 72 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V+ Sbjct: 1 KTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVM 59 Query: 195 SKSAIEALEDRF 206 + A++ +E+ Sbjct: 60 TADAVKQVEEML 71 >gi|254283297|ref|ZP_04958265.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B] gi|219679500|gb|EED35849.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B] Length = 86 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 ++ KTK L + + L N LII ++D+N LA+RN+ +++ V+G+N ++ K Sbjct: 12 EQPKTKLLAEQLKGFGLENVLII-SSEVDKNLYLASRNLHRVDVSDVEGVNPVSLVAFDK 70 Query: 192 LVLSKSAIEALED 204 ++++ A++ E+ Sbjct: 71 VLVTVDAVKKFEE 83 >gi|313616907|gb|EFR89559.1| 50S ribosomal protein L4 [Listeria innocua FSL S4-378] Length = 75 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 40/70 (57%) Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK + + + +I N +L+ARN+ I ++P + I+V ++ + KL++ Sbjct: 3 KTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKLII 62 Query: 195 SKSAIEALED 204 +K+A+E +E+ Sbjct: 63 TKAAVEKVEE 72 >gi|242068967|ref|XP_002449760.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor] gi|241935603|gb|EES08748.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor] Length = 79 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198 D L++DG +D+ +LA +N+ +N+LP G++VY IL+ L ++++A Sbjct: 3 DTKKVLLVDGGDIDKILRLATQNLHYVNVLPSIGLDVYSILQHDTLAMTQAA 54 >gi|226329482|ref|ZP_03805000.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198] gi|225202668|gb|EEG85022.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198] Length = 102 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 AL+ LS+ + ++V++ + KTK L + + + L + LII LD N LAAR Sbjct: 5 ALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLII-TADLDENLYLAAR 63 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N+ +++ I+ ++ K+V++ A++ +E+ Sbjct: 64 NLYKVDVRDAATIDPVSLIAFDKVVMTADAVKQVEE 99 >gi|68471073|ref|XP_720313.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida albicans SC5314] gi|77022564|ref|XP_888726.1| hypothetical protein CaO19_7019 [Candida albicans SC5314] gi|46442175|gb|EAL01466.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida albicans SC5314] gi|76573539|dbj|BAE44623.1| hypothetical protein [Candida albicans] gi|238883264|gb|EEQ46902.1| hypothetical protein CAWG_05453 [Candida albicans WO-1] Length = 278 Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%) Query: 12 EDKGVISVSEDIFAL-KP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E K I + F KP ++ IL + +++ + R+G + + +S+ Y+ K+ QKG Sbjct: 56 EPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKG 115 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVH----ALPKKVRSLALRHALSDKFCSNDIMV 125 +GRAR + KA I G H LP K+ S +++A + + ++ V Sbjct: 116 SGRARLGDANSPHMDNEIKAHA---IKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNV 172 Query: 126 IDNLVSKECKTKYLVTRF---RALDLSNALIIDGCQLD------RNFQLAARNIPNIN-- 174 ++N + + + F L+ N L I D + F + + ++N Sbjct: 173 VENELDFQYGYDIITQSFVSVHNLNKLNLLFITNEPRDNLMESIKKFYINEKEFNSLNKK 232 Query: 175 ------------LLPVQGINVYDILRCSKLVLSKSAIE 200 +L + + V DILR ++ + SA++ Sbjct: 233 EKPKYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQ 270 >gi|169839689|ref|ZP_02872877.1| 50S ribosomal protein L4 [candidate division TM7 single-cell isolate TM7a] Length = 58 Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 26/48 (54%) Query: 45 RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP 92 R G + +K R+EV G K + QKGTGRAR S GGG GP Sbjct: 2 RQGSASTKTRAEVRGGGRKPFRQKGTGRARQGSTRAPHMVGGGVVHGP 49 >gi|301500869|ref|YP_003795281.1| ribosomal protein L4 [Chromera velia] gi|300069415|gb|ADJ66523.1| ribosomal protein L4 [Chromera velia] Length = 272 Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%) Query: 1 MIELSVRNLDGEDKGVISVSEDI-FALKP---QQGILARVL--------RWQSWRKRIGC 48 M + S++ L + + +I + I F KP + ++ ++L R++ + + C Sbjct: 139 MTKSSLKGLKSQARPLIEANLSIIFPWKPSNLKHLLMGKILSLSLWKAFRYELYNYKFWC 198 Query: 49 -SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP 92 S + RS+V +G K QKG+GRARH S + GG+ FGP Sbjct: 199 FSSTLTRSQVKASGKKRSPQKGSGRARHGSFRTVFSKKGGRVFGP 243 >gi|241957177|ref|XP_002421308.1| 60S ribosomal (large subunit) protein, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223644652|emb|CAX40642.1| 60S ribosomal (large subunit) protein, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 272 Score = 41.6 bits (96), Expect = 0.074, Method: Compositional matrix adjust. Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 32/218 (14%) Query: 12 EDKGVISVSEDIFAL-KP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E K I + + F KP ++ IL + +++ + R+G + +S+ Y+ K+ QKG Sbjct: 50 EPKTFIPLPTNFFNTEKPIRRDILWSCVTYEADKARVGSNYVILKSDSPYSNRKLRPQKG 109 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVH----ALPKKVRSLALRHALSDKFCSNDIMV 125 +GRAR + KA I G H LP K+ S +++A + + ++ + Sbjct: 110 SGRARLGDANSPHMDNEIKAHA---IKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNI 166 Query: 126 IDNLVSKECKTKYLVTRF---RALDLSNALIIDGCQLD------RNFQLAARNIPNIN-- 174 ++N ++ + + F L+ N L I D + F + + ++N Sbjct: 167 VENELNFQYGYDIITQSFVSIHNLNKLNLLFITNEPRDNLMESIKQFYINDKEFNSLNKK 226 Query: 175 ------------LLPVQGINVYDILRCSKLVLSKSAIE 200 +L + + V DILR ++ + SA++ Sbjct: 227 EKPKYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQ 264 >gi|323164884|gb|EFZ50675.1| 50S ribosomal protein L4 [Shigella sonnei 53G] Length = 104 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARS 70 Query: 76 SSKSVSQFRGGGKAFGPVP 94 S +R GG F P Sbjct: 71 GSIKSPIWRSGGVTFAARP 89 >gi|255731336|ref|XP_002550592.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404] gi|240131601|gb|EER31160.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404] Length = 266 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 ++ IL + +++ + RIG + +S+ Y+ K+ QKG+G AR ++ K Sbjct: 62 RRDILWSSVVYEADKSRIGSNYVVLKSDSPYSNRKLRRQKGSGMARLGDRNSPHMDNEIK 121 Query: 89 AFGPVPIIGVH----ALPKKVRSLALRHALSDKFCSNDIMVIDN 128 A I G H LPKK+ L ++A ++ + ++ +I+N Sbjct: 122 AHA---IKGPHDWSTELPKKIYDLGFKNAFTNHYKLGNLNIIEN 162 >gi|149020532|gb|EDL78337.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_c [Rattus norvegicus] Length = 157 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAE 119 >gi|323307837|gb|EGA61099.1| Yml6p [Saccharomyces cerevisiae FostersO] Length = 164 Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 10/98 (10%) Query: 67 QKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKG+GRAR + GG+A P LP KV S+A +ALS ++ S + V Sbjct: 3 QKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFV 62 Query: 126 ID----NLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 I +L+S + LDL N ++G ++ Sbjct: 63 IGGEKVDLISPTPELD-----LNRLDLVNTNTVEGKEI 95 >gi|207342484|gb|EDZ70238.1| YML025Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|323303662|gb|EGA57450.1| Yml6p [Saccharomyces cerevisiae FostersB] gi|323332281|gb|EGA73691.1| Yml6p [Saccharomyces cerevisiae AWRI796] gi|323336203|gb|EGA77474.1| Yml6p [Saccharomyces cerevisiae Vin13] gi|323347095|gb|EGA81370.1| Yml6p [Saccharomyces cerevisiae Lalvin QA23] gi|323352992|gb|EGA85292.1| Yml6p [Saccharomyces cerevisiae VL3] Length = 181 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 10/98 (10%) Query: 67 QKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKG+GRAR + GG+A P LP KV S+A +ALS ++ S + V Sbjct: 3 QKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFV 62 Query: 126 ID----NLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159 I +L+S + LDL N ++G ++ Sbjct: 63 IGGEKVDLISPTPELD-----LNRLDLVNTNTVEGKEI 95 >gi|94991546|ref|YP_599645.1| 50S ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] gi|94993444|ref|YP_601542.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] gi|94545054|gb|ABF35101.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] gi|94546952|gb|ABF36998.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] Length = 98 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 45/95 (47%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 ++ S K + + ++ L KT AL + +++ + + L+ARN Sbjct: 1 MKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARN 60 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 +PN+ + +V DI+ KL+++K AI +E+ Sbjct: 61 LPNVTVATAATASVLDIVNADKLLVTKEAISTIEE 95 >gi|302807170|ref|XP_002985298.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii] gi|300147126|gb|EFJ13792.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii] Length = 343 Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 L N + EDK + ++EDIF + ++ I+ V++WQ ++R G +K R EVA Sbjct: 291 LPATNWEQEDKRTLPIAEDIFDVPMRKDIVQHVVKWQRAKRRKG---TKTRGEVA 342 >gi|11496536|ref|NP_044546.1| ribosomal protein L4 [Toxoplasma gondii RH] gi|5231239|gb|AAD41133.1|U87145_2 ribosomal protein L4 [Toxoplasma gondii] Length = 211 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR-HSSKSVSQFRGGGKAFGPVPIIGVHALP 102 K S +K ++ +Y+ K+ QKG+G+AR S KSV Q +GG AFG + L Sbjct: 56 KNFKISNTKNKAFSSYSNKKLRQQKGSGKARIGSKKSVLQ-KGGSVAFGLNLKRYFNPLI 114 Query: 103 KKVRSLALRHALSDKFCSNDIMVID 127 KK L L++ +K +I +I+ Sbjct: 115 KKTLFLILKYLCLNK--RTNIYIIN 137 >gi|258543822|ref|ZP_05704056.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826] gi|258520911|gb|EEV89770.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826] Length = 103 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 ALR S+ + + +++ L KTK V+ + ++ L+ N LA+R Sbjct: 5 ALRSIFSELQRQDRLCLVEELNFSSNKTKDFVSYAAEMGFGQDFLLITESLNENLFLASR 64 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 NIP++ ++ V+ I+ +LR K+ + K AIE Sbjct: 65 NIPSVVVVDVEAIDPVLLLRHEKVAIDKLAIE 96 >gi|90021684|ref|YP_527511.1| amidophosphoribosyl transferase [Saccharophagus degradans 2-40] gi|89951284|gb|ABD81299.1| HipA-like protein [Saccharophagus degradans 2-40] Length = 404 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%) Query: 84 RGGGKAFGPVPII-GVHALPKKVRSLALRHALSDKFCSNDIMVID----------NLVSK 132 RG K P+P + +H L K L L+H K ++ +++ + Sbjct: 116 RGQAKVPAPLPTMQHLHDLAKAAEKLELKH----KLAPEELALLEPGSSMGGARPKVTVA 171 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + +T++LV +A DL + +++ C + + N+P L+ V G N + I+R Sbjct: 172 DDETRWLVKFAKAWDLVDVPLLEYCSMQFLKDVLGLNVPETRLINVGGKNAFAIVR 227 >gi|242068965|ref|XP_002449759.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor] gi|241935602|gb|EES08747.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor] Length = 64 Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114 H +K++ +F GG GP P I L KKVR L L+ AL Sbjct: 23 HLTKAIGEFHGGATIHGPKPRIHAIKLQKKVRRLGLKIAL 62 >gi|115712810|ref|XP_001182016.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115938904|ref|XP_001186404.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 89 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 25/45 (55%) Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 NF A I N+L +G+NVY +L+ LVL+ A+ LE R Sbjct: 4 NFLEAVNGIKTFNVLSAEGLNVYSMLKHKTLVLTLDAVNLLEQRL 48 >gi|297745940|emb|CBI15996.3| unnamed protein product [Vitis vinifera] Length = 99 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 30/46 (65%) Query: 157 CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ N +L++RNI + +L + +N++DIL KLVL++ ++ L Sbjct: 17 TEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLVLTQETVDYL 62 >gi|70953649|ref|XP_745912.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526380|emb|CAH77375.1| hypothetical protein PC103611.00.0 [Plasmodium chabaudi chabaudi] Length = 127 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 51 SKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLAL 110 +K RS + ++ K+ VQKGTG+AR + S + + G FGP + K + L Sbjct: 60 TKNRSLINFSKKKIRVQKGTGKARLKTLSSTVCKQGACTFGPFYKSKIIKYNKFIYKLIF 119 Query: 111 RHALSDK 117 + L +K Sbjct: 120 IYLLINK 126 >gi|213612410|ref|ZP_03370236.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 58 Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + LII G +LD N LAARN+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 2 DVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEE 55 Searching..................................................done Results from round 2 >gi|132978|sp|P28601|RL4_BACST RecName: Full=50S ribosomal protein L4; Short=BL4 gi|40103|emb|CAA47403.1| ribosomal protein L4 [Geobacillus stearothermophilus] Length = 207 Score = 303 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 125/206 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++P G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVPANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206 >gi|56418642|ref|YP_145960.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426] gi|261417608|ref|YP_003251290.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC61] gi|297528483|ref|YP_003669758.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3] gi|319765266|ref|YP_004130767.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52] gi|81558135|sp|Q5L3Z6|RL4_GEOKA RecName: Full=50S ribosomal protein L4 gi|56378484|dbj|BAD74392.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426] gi|261374065|gb|ACX76808.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61] gi|297251735|gb|ADI25181.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3] gi|317110132|gb|ADU92624.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52] Length = 207 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 124/206 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206 >gi|196251023|ref|ZP_03149705.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16] gi|196209495|gb|EDY04272.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16] Length = 207 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 124/206 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206 >gi|239825694|ref|YP_002948318.1| 50S ribosomal protein L4 [Geobacillus sp. WCH70] gi|259491561|sp|C5D3R8|RL4_GEOSW RecName: Full=50S ribosomal protein L4 gi|239805987|gb|ACS23052.1| ribosomal protein L4/L1e [Geobacillus sp. WCH70] Length = 207 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 123/206 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N GE G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQSGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+DNL + KTK +V L + +I ++ N L+ARNIP + ++ G Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDDVNENVTLSARNIPGVTVVTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206 >gi|138893786|ref|YP_001124239.1| 50S ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2] gi|166234670|sp|A4IJJ0|RL4_GEOTN RecName: Full=50S ribosomal protein L4 gi|134265299|gb|ABO65494.1| Ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2] Length = 207 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 124/206 (60%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+V+D L + KTK +V L + +I +L+ N L+ARNIP + ++ G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLSHDKLVITKAAVEKVEEVL 206 >gi|212637955|ref|YP_002314475.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus WK1] gi|226730612|sp|B7GJ68|RL4_ANOFW RecName: Full=50S ribosomal protein L4 gi|212559435|gb|ACJ32490.1| Ribosomal protein L4 [Anoxybacillus flavithermus WK1] Length = 207 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 123/206 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+DNL + KTK +V L + +I + N L+ARNIP + ++ G Sbjct: 121 NSIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTADANENVILSARNIPGVTVVTASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206 >gi|295401919|ref|ZP_06811882.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93] gi|312109262|ref|YP_003987578.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1] gi|294976049|gb|EFG51664.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93] gi|311214363|gb|ADP72967.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1] Length = 207 Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 123/206 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE G I +++ +F ++P + +L + Q R G K+K R+EV+ Sbjct: 1 MPKVALYNQNGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+DNL + KTK +V L + +I + N L+ARNIP + ++ G Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDVANENVALSARNIPGVTVVTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KLV++K+A+E +E+ Sbjct: 181 INVLDLLNHDKLVITKAAVEKVEEVL 206 >gi|15612698|ref|NP_241001.1| 50S ribosomal protein L4 [Bacillus halodurans C-125] gi|7674304|sp|Q9Z9L3|RL4_BACHD RecName: Full=50S ribosomal protein L4 gi|4512405|dbj|BAA75272.1| rplD homologue (identity of 79% to B. subtilis ) [Bacillus halodurans] gi|10172747|dbj|BAB03854.1| 50S ribosomal protein L4 [Bacillus halodurans C-125] Length = 207 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +S+ +F ++P + +L + Q R G K+K RSEV Sbjct: 1 MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+++L + KTK + + L + ++ + N L+ARNIP + + +G Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVTFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+++ KL+++K A+E +E+ Sbjct: 181 VNVLDVIKHDKLIITKDAVEKVEEVL 206 >gi|56961933|ref|YP_173655.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16] gi|81601105|sp|Q5WLR1|RL4_BACSK RecName: Full=50S ribosomal protein L4 gi|56908167|dbj|BAD62694.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16] Length = 207 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N G G I +++++F ++P + +L + Q R G K+KGRSEV Sbjct: 1 MPKVSLFNQTGSQVGEIELADNVFGVEPNESVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D+L + KTK + +L + + ++ + N L+ARN+P I L G Sbjct: 121 SELVVLDDLKLEAIKTKAMKDVLASLSVDSKALVVTADYNENVALSARNLPGITFLTADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L+ KLV++K A+E +E+ Sbjct: 181 VNVLDLLKHDKLVITKDAVEKVEEVL 206 >gi|288554726|ref|YP_003426661.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4] gi|288545886|gb|ADC49769.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4] Length = 207 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I +S+ IF ++P Q +L + Q R G K+KGRSEV Sbjct: 1 MPKVAVFNQAGSQVGDIELSDSIFGIEPNQSVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKLKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+DNL KTK + L + + ++ + L+ RN+P + + +G Sbjct: 121 AEIVVLDNLQLDAPKTKDMANVLNGLSVDSKALVVTADYNETVALSTRNLPGVTFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L+ KLV++K A+ +E+ Sbjct: 181 VNVLDVLKHDKLVITKDAVAKVEEVL 206 >gi|167463901|ref|ZP_02328990.1| 50S ribosomal protein L4 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381125|ref|ZP_08055128.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154701|gb|EFX46972.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +S+ +F ++P +L + Q R G K+KGRSEV Sbjct: 1 MPKVALYNVQGTQVGEVELSDAVFGIEPHVHVLHEAVVMQQASLRQGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D+L + KTK L + ++ + D N +ARNIP + L G Sbjct: 121 NEIVVLDDLAMAQPKTKEFAAILTNLKVERKALVVASEHDENVARSARNIPGVKFLAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLGYDKLIITKDAVQKVEEVL 206 >gi|89100348|ref|ZP_01173213.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911] gi|89084969|gb|EAR64105.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911] Length = 207 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P +L + Q R G K+K RSEVA Sbjct: 1 MPKVALLNQAGSQVGEIELNETIFGIEPNNHVLFEAVVMQRASLRQGTHKTKIRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V++NL + KTK L + +I LD N L+ARNIP + ++ G Sbjct: 121 ENILVLENLALETPKTKDFKGVLTGLSVDKKALIVTADLDENVALSARNIPGVTVVTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLSHDKLIMTKAAVEKVEEVL 206 >gi|30018381|ref|NP_830012.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 14579] gi|30260302|ref|NP_842679.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames] gi|42779192|ref|NP_976439.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10987] gi|47525367|ref|YP_016716.1| 50S ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183145|ref|YP_026397.1| 50S ribosomal protein L4 [Bacillus anthracis str. Sterne] gi|49476718|ref|YP_034463.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145106|ref|YP_081722.1| 50S ribosomal protein L4 [Bacillus cereus E33L] gi|118475880|ref|YP_893031.1| 50S ribosomal protein L4 [Bacillus thuringiensis str. Al Hakam] gi|206972278|ref|ZP_03233225.1| 50S ribosomal protein L4 [Bacillus cereus AH1134] gi|217957686|ref|YP_002336230.1| 50S ribosomal protein L4 [Bacillus cereus AH187] gi|218234634|ref|YP_002364960.1| 50S ribosomal protein L4 [Bacillus cereus B4264] gi|218895246|ref|YP_002443657.1| ribosomal protein L4 [Bacillus cereus G9842] gi|218901315|ref|YP_002449149.1| ribosomal protein L4 [Bacillus cereus AH820] gi|222093881|ref|YP_002527931.1| 50S ribosomal protein l4 [Bacillus cereus Q1] gi|225862163|ref|YP_002747541.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102] gi|227812784|ref|YP_002812793.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684] gi|228898864|ref|ZP_04063146.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222] gi|228905908|ref|ZP_04069805.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200] gi|228912850|ref|ZP_04076497.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228919061|ref|ZP_04082440.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228925364|ref|ZP_04088460.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931613|ref|ZP_04094519.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228937414|ref|ZP_04100060.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228943917|ref|ZP_04106302.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228950659|ref|ZP_04112793.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956552|ref|ZP_04118348.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963211|ref|ZP_04124380.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228970300|ref|ZP_04130959.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976870|ref|ZP_04137282.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407] gi|228983366|ref|ZP_04143579.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229027959|ref|ZP_04184112.1| 50S ribosomal protein L4 [Bacillus cereus AH1271] gi|229041016|ref|ZP_04189779.1| 50S ribosomal protein L4 [Bacillus cereus AH676] gi|229067876|ref|ZP_04201193.1| 50S ribosomal protein L4 [Bacillus cereus F65185] gi|229074172|ref|ZP_04207218.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18] gi|229089242|ref|ZP_04220523.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42] gi|229094833|ref|ZP_04225838.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29] gi|229100910|ref|ZP_04231714.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28] gi|229107797|ref|ZP_04237433.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15] gi|229113787|ref|ZP_04243222.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3] gi|229119773|ref|ZP_04249034.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201] gi|229125628|ref|ZP_04254660.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4] gi|229136957|ref|ZP_04265584.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26] gi|229142917|ref|ZP_04271358.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24] gi|229148520|ref|ZP_04276776.1| 50S ribosomal protein L4 [Bacillus cereus m1550] gi|229153889|ref|ZP_04282019.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342] gi|229159284|ref|ZP_04287308.1| 50S ribosomal protein L4 [Bacillus cereus R309803] gi|229170962|ref|ZP_04298563.1| 50S ribosomal protein L4 [Bacillus cereus MM3] gi|229176711|ref|ZP_04304115.1| 50S ribosomal protein L4 [Bacillus cereus 172560W] gi|229182505|ref|ZP_04309756.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1] gi|229188396|ref|ZP_04315444.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876] gi|229194501|ref|ZP_04321304.1| 50S ribosomal protein L4 [Bacillus cereus m1293] gi|229602888|ref|YP_002864762.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248] gi|254684385|ref|ZP_05148245.1| 50S ribosomal protein L4 [Bacillus anthracis str. CNEVA-9066] gi|254720833|ref|ZP_05182625.1| 50S ribosomal protein L4 [Bacillus anthracis str. A1055] gi|254733588|ref|ZP_05191308.1| 50S ribosomal protein L4 [Bacillus anthracis str. Western North America USA6153] gi|254739508|ref|ZP_05197205.1| 50S ribosomal protein L4 [Bacillus anthracis str. Kruger B] gi|254751227|ref|ZP_05203265.1| 50S ribosomal protein L4 [Bacillus anthracis str. Vollum] gi|254756766|ref|ZP_05208795.1| 50S ribosomal protein L4 [Bacillus anthracis str. Australia 94] gi|296500945|ref|YP_003662645.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171] gi|300119577|ref|ZP_07057121.1| 50S ribosomal protein L4 [Bacillus cereus SJ1] gi|301051848|ref|YP_003790059.1| 50S ribosomal protein L4 [Bacillus anthracis CI] gi|46576767|sp|Q81J41|RL4_BACCR RecName: Full=50S ribosomal protein L4 gi|46576769|sp|Q81VS9|RL4_BACAN RecName: Full=50S ribosomal protein L4 gi|81570005|sp|Q73F95|RL4_BACC1 RecName: Full=50S ribosomal protein L4 gi|81614034|sp|Q6HPQ7|RL4_BACHK RecName: Full=50S ribosomal protein L4 gi|81689839|sp|Q63H89|RL4_BACCZ RecName: Full=50S ribosomal protein L4 gi|166234634|sp|A0R8I1|RL4_BACAH RecName: Full=50S ribosomal protein L4 gi|226730615|sp|B7JKC0|RL4_BACC0 RecName: Full=50S ribosomal protein L4 gi|226730616|sp|B7IT20|RL4_BACC2 RecName: Full=50S ribosomal protein L4 gi|226730617|sp|B7HJ49|RL4_BACC4 RecName: Full=50S ribosomal protein L4 gi|226730618|sp|B7HQU5|RL4_BACC7 RecName: Full=50S ribosomal protein L4 gi|254803712|sp|C3P9Q6|RL4_BACAA RecName: Full=50S ribosomal protein L4 gi|254803713|sp|C3LJ83|RL4_BACAC RecName: Full=50S ribosomal protein L4 gi|254803714|sp|C1ET40|RL4_BACC3 RecName: Full=50S ribosomal protein L4 gi|254803715|sp|B9IZJ5|RL4_BACCQ RecName: Full=50S ribosomal protein L4 gi|29893921|gb|AAP07213.1| LSU ribosomal protein L1E/L4P [Bacillus cereus ATCC 14579] gi|30253623|gb|AAP24165.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames] gi|42735107|gb|AAS39047.1| ribosomal protein L4 [Bacillus cereus ATCC 10987] gi|47500515|gb|AAT29191.1| ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49177072|gb|AAT52448.1| ribosomal protein L4 [Bacillus anthracis str. Sterne] gi|49328274|gb|AAT58920.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978575|gb|AAU20125.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus E33L] gi|118415105|gb|ABK83524.1| LSU ribosomal protein L4P [Bacillus thuringiensis str. Al Hakam] gi|206732852|gb|EDZ50027.1| 50S ribosomal protein L4 [Bacillus cereus AH1134] gi|217062939|gb|ACJ77189.1| ribosomal protein L4 [Bacillus cereus AH187] gi|218162591|gb|ACK62583.1| ribosomal protein L4 [Bacillus cereus B4264] gi|218538801|gb|ACK91199.1| ribosomal protein L4 [Bacillus cereus AH820] gi|218543914|gb|ACK96308.1| ribosomal protein L4 [Bacillus cereus G9842] gi|221237929|gb|ACM10639.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus Q1] gi|225787946|gb|ACO28163.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102] gi|227006772|gb|ACP16515.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684] gi|228588967|gb|EEK46982.1| 50S ribosomal protein L4 [Bacillus cereus m1293] gi|228595070|gb|EEK52841.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876] gi|228600960|gb|EEK58529.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1] gi|228606754|gb|EEK64171.1| 50S ribosomal protein L4 [Bacillus cereus 172560W] gi|228612502|gb|EEK69723.1| 50S ribosomal protein L4 [Bacillus cereus MM3] gi|228624176|gb|EEK80978.1| 50S ribosomal protein L4 [Bacillus cereus R309803] gi|228629570|gb|EEK86267.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342] gi|228634936|gb|EEK91509.1| 50S ribosomal protein L4 [Bacillus cereus m1550] gi|228640538|gb|EEK96927.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24] gi|228646495|gb|EEL02702.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26] gi|228657820|gb|EEL13626.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4] gi|228663674|gb|EEL19253.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201] gi|228669658|gb|EEL25065.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3] gi|228675646|gb|EEL30854.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15] gi|228682489|gb|EEL36562.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28] gi|228688576|gb|EEL42449.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29] gi|228694081|gb|EEL47763.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42] gi|228708942|gb|EEL61069.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18] gi|228715235|gb|EEL67094.1| 50S ribosomal protein L4 [Bacillus cereus F65185] gi|228727313|gb|EEL78507.1| 50S ribosomal protein L4 [Bacillus cereus AH676] gi|228733347|gb|EEL84176.1| 50S ribosomal protein L4 [Bacillus cereus AH1271] gi|228776356|gb|EEM24709.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228782840|gb|EEM31006.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407] gi|228789409|gb|EEM37329.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228796469|gb|EEM43908.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228803117|gb|EEM49939.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228809010|gb|EEM55495.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228815750|gb|EEM61986.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822247|gb|EEM68229.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228828041|gb|EEM73769.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834286|gb|EEM79827.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228840586|gb|EEM85848.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228846786|gb|EEM91791.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228853723|gb|EEM98483.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200] gi|228860764|gb|EEN05142.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222] gi|229267296|gb|ACQ48933.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248] gi|296321997|gb|ADH04925.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171] gi|298723049|gb|EFI63947.1| 50S ribosomal protein L4 [Bacillus cereus SJ1] gi|300374017|gb|ADK02921.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI] gi|324324102|gb|ADY19362.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus YBT-020] gi|326937906|gb|AEA13802.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis CT-43] Length = 207 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK ++ + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206 >gi|319654869|ref|ZP_08008944.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2] gi|317393432|gb|EFV74195.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2] Length = 207 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ IF ++P Q +L + Q R G K+K RSEVA Sbjct: 1 MPKVALFNQSGSKVGDIELNDAIFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V++ L + KTK L + + +I LD N L+ARNIP + ++ G Sbjct: 121 ENILVLEGLAFETPKTKDFKGVLTGLSVDSKALIVTADLDENVALSARNIPGVTVVSASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I V D+L KL+++K+A+E +E+ Sbjct: 181 ITVLDVLNHDKLIMTKAAVEKVEEVL 206 >gi|229083431|ref|ZP_04215779.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44] gi|228699864|gb|EEL52501.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44] Length = 207 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLPVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206 >gi|163938119|ref|YP_001643003.1| 50S ribosomal protein L4 [Bacillus weihenstephanensis KBAB4] gi|229009620|ref|ZP_04166846.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048] gi|229015513|ref|ZP_04172511.1| 50S ribosomal protein L4 [Bacillus cereus AH1273] gi|229021722|ref|ZP_04178304.1| 50S ribosomal protein L4 [Bacillus cereus AH1272] gi|229053957|ref|ZP_04195391.1| 50S ribosomal protein L4 [Bacillus cereus AH603] gi|229131119|ref|ZP_04260031.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196] gi|229165099|ref|ZP_04292894.1| 50S ribosomal protein L4 [Bacillus cereus AH621] gi|226730619|sp|A9VP78|RL4_BACWK RecName: Full=50S ribosomal protein L4 gi|163860316|gb|ABY41375.1| ribosomal protein L4/L1e [Bacillus weihenstephanensis KBAB4] gi|228618362|gb|EEK75392.1| 50S ribosomal protein L4 [Bacillus cereus AH621] gi|228652332|gb|EEL08257.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196] gi|228721375|gb|EEL72896.1| 50S ribosomal protein L4 [Bacillus cereus AH603] gi|228739590|gb|EEL90004.1| 50S ribosomal protein L4 [Bacillus cereus AH1272] gi|228745800|gb|EEL95804.1| 50S ribosomal protein L4 [Bacillus cereus AH1273] gi|228751642|gb|EEM01442.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048] Length = 207 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206 >gi|308070974|ref|YP_003872579.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681] gi|310644201|ref|YP_003948960.1| 50S ribosomal protein l4 [Paenibacillus polymyxa SC2] gi|305860253|gb|ADM72041.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681] gi|309249152|gb|ADO58719.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2] Length = 207 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G I +++ +F ++P + +L + Q R G K KGRSEV Sbjct: 1 MPKVALFNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L +I D N L+ARNIP + + G Sbjct: 121 NEIIVLDALTLNGPKTKEFAAILNNLKADRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLGHDKLIITKEAVQKVEEVL 206 >gi|228989320|ref|ZP_04149311.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442] gi|228995502|ref|ZP_04155170.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17] gi|229003127|ref|ZP_04160973.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4] gi|228758090|gb|EEM07289.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4] gi|228764231|gb|EEM13110.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17] gi|228770398|gb|EEM18971.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442] Length = 207 Score = 290 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 119/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I + +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANEAVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206 >gi|205372068|ref|ZP_03224885.1| 50S ribosomal protein L4 [Bacillus coahuilensis m4-4] Length = 207 Score = 290 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 121/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N G G I +++ IF ++P Q ++ + Q R G K KGRSEVA Sbjct: 1 MPKVSLLNQTGSQVGDIELNDSIFGIEPNQSVMFDAVIMQRASLRQGNHKVKGRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSTKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L KTK V + L L N +++ LD N L+ARNIP + ++P G Sbjct: 121 ENIIVLDQLTFAAPKTKEFVAVLKNLSLDNKVLVVTDGLDENVALSARNIPGVTVVPSNG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V D+L KLV++K+A+E +E+ Sbjct: 181 ISVLDVLGHDKLVMTKAAVEKVEEVL 206 >gi|296131837|ref|YP_003639084.1| ribosomal protein L4/L1e [Thermincola sp. JR] gi|296030415|gb|ADG81183.1| ribosomal protein L4/L1e [Thermincola potens JR] Length = 206 Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 121/206 (58%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G I + +++F ++P +G++ V+ Q +R+G + +K R+EV+ Sbjct: 1 MPKVALYNIKGEQVGEIELKDEVFGIEPNEGLVHDVVVMQLANRRVGTASTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +PKK R LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPKPRSFNYTMPKKARRLALKSVLSSKVSD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L + KTK + L A+++ +D+N +ARNIP + L G Sbjct: 121 GNIIVLDTLEMAQPKTKEMAEILNRLKAKKAVVVT-ADVDQNVIKSARNIPGVTPLTASG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++ KLV++K A+ +E+ Sbjct: 180 LNVYDLVNHEKLVITKDAVAKVEEVL 205 >gi|258512669|ref|YP_003186103.1| 50S ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479395|gb|ACV59714.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 206 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N G+ G I ++E IF + ++ V+ +R G K+K R+EV+ Sbjct: 1 MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG GPVP +PKKVR AL ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V++ L + KTK +V R L++ ALIIDG + + L+ARNIPN+ + G Sbjct: 121 GKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIIDGEKK-QPVYLSARNIPNVKYMEAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY++LR LVL+K A++ +E+ F Sbjct: 180 LNVYELLRHDHLVLTKDAVQKVEEVF 205 >gi|167036802|ref|YP_001664380.1| 50S ribosomal protein L4 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039521|ref|YP_001662506.1| 50S ribosomal protein L4 [Thermoanaerobacter sp. X514] gi|256752633|ref|ZP_05493485.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1] gi|300915228|ref|ZP_07132543.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561] gi|307267013|ref|ZP_07548529.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1] gi|307725152|ref|YP_003904903.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter sp. X513] gi|320115224|ref|YP_004185383.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390660|ref|ZP_08212215.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200] gi|226731436|sp|B0KCK1|RL4_THEP3 RecName: Full=50S ribosomal protein L4 gi|226731437|sp|B0K5P4|RL4_THEPX RecName: Full=50S ribosomal protein L4 gi|166853761|gb|ABY92170.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X514] gi|166855636|gb|ABY94044.1| ribosomal protein L4/L1e [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748453|gb|EEU61505.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1] gi|300888952|gb|EFK84099.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561] gi|306917998|gb|EFN48256.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1] gi|307582213|gb|ADN55612.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X513] gi|319928315|gb|ADV79000.1| ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993338|gb|EGD51775.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200] Length = 206 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ GE G I + + +F + ++ + +R G +K R EV Sbjct: 1 MPKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D + KTK +V + ++ +ALI+ + ++N +L+ARNIP + L Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFNVDSALIVV-PEGEKNVELSARNIPGVKTLYANY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YDIL+ K +++K A+ +E+ + Sbjct: 180 LNTYDILKYDKFIITKDAVGIVEEVY 205 >gi|152973957|ref|YP_001373474.1| 50S ribosomal protein L4 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189029490|sp|A7GK21|RL4_BACCN RecName: Full=50S ribosomal protein L4 gi|152022709|gb|ABS20479.1| ribosomal protein L4/L1e [Bacillus cytotoxicus NVH 391-98] Length = 207 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N G G I ++E IF ++P + +L + Q R G K K RSEV+ Sbjct: 1 MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVVMQRASLRQGTHKVKNRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++LV KTK +V + L + +I ++ +L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLAVEKKALIVTADVNEAVELSARNIPGVTVITADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L KL+++K+A+E +E+ Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206 >gi|218290004|ref|ZP_03494181.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1] gi|218239989|gb|EED07176.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1] Length = 206 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N G+ G I ++E IF + ++ V+ +R G K+K R+EV+ Sbjct: 1 MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG GPVP +PKKVR AL ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V++ L + KTK +V R L++ ALI+DG + + L+ARNIPN+ + G Sbjct: 121 GKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIVDGEKK-QPVYLSARNIPNVKYMEAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY++LR LVL+K A++ +E+ F Sbjct: 180 LNVYELLRHDHLVLTKDAVQKVEEVF 205 >gi|253577180|ref|ZP_04854500.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str. D14] gi|251843424|gb|EES71452.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str. D14] Length = 207 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +++ +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALFNISGSQVGEVELNDAVFGIEPNTHVLHEAVVMQRASLRFGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L KTK L + ++ D N L+ARNIP + + G Sbjct: 121 QDIIVLDALAMNAPKTKEFAAILNNLKVERKALVVAPDYDDNIALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KL+++K A++ +E+ Sbjct: 181 INVLDVLTHDKLIITKEAVQKVEEVL 206 >gi|289579144|ref|YP_003477771.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9] gi|297545328|ref|YP_003677630.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528857|gb|ADD03209.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9] gi|296843103|gb|ADH61619.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 206 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ GE G I + + +F + ++ + + +R G +K R EV Sbjct: 1 MAKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHQAVLNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D + KTK +V + ++ +ALI+ + ++N +L+ RNIP + L Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFNVDSALIVV-PEGEKNVELSTRNIPGVKTLYANY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ K +++K A+ +E+ + Sbjct: 180 LNTYDVLKYDKFIITKDAVGIVEEVY 205 >gi|299541933|ref|ZP_07052256.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1] gi|298725671|gb|EFI66312.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1] Length = 207 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK + L L + LD N L+ARNIP + +L G Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L K+V +KSA+E +E+ Sbjct: 181 INVLDLLGHDKVVFTKSAVEKVEEVL 206 >gi|323703547|ref|ZP_08115193.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574] gi|323531538|gb|EGB21431.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574] Length = 206 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 120/206 (58%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G + + +++F ++P + ++ V+ +R G +K R+EV Sbjct: 1 MPKVALYNISGEQIGEVELKDEVFGIEPNEAVMHDVVVMHLANQRQGTHDTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P ++LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYSYSLPKKVRRLALKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L + KTK +V+ L AL++ D N + +ARNIP + + G Sbjct: 121 DNIIVLDKLTMEVPKTKEMVSILANLKADKALVVT-ADRDINVEKSARNIPGVKPVKAGG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYD+L+ KLV++K A+ +E+ Sbjct: 180 VSVYDLLKYDKLVITKDAVAKIEEVL 205 >gi|317126862|ref|YP_004093144.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522] gi|315471810|gb|ADU28413.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +SE IF ++P + +L + Q +R G +KGRS+V Sbjct: 1 MPKVTLYNQTGSQVGDIELSEAIFGIEPNESVLFDAVVMQQASQRQGTHATKGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + +PKK R LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPQPRSYAYKIPKKQRRLALKSALSSKVNA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V++ L KTK + L + ++ + L+ARNIP + + +G Sbjct: 121 DEILVLEGLNFDSPKTKEMKAVLSGLSVGRKALVVTADYNDAVALSARNIPGVKFITAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L +L++++ A++ +E+ Sbjct: 181 VNVLDLLNYDQLIITQDAVKKVEEVL 206 >gi|251799641|ref|YP_003014372.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2] gi|247547267|gb|ACT04286.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2] Length = 207 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G + G I +++ +F ++P +L + Q +R G K+KGRSEV Sbjct: 1 MPKVTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L ++ D N L+ARNIP + + G Sbjct: 121 NEIVVLDQLTFAAPKTKEFAAILNNLKADRKALVVLPAYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L KL+++K A+E +++ F Sbjct: 181 INVLDVLVHDKLIITKEAVEKVQEVF 206 >gi|229542202|ref|ZP_04431262.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1] gi|229326622|gb|EEN92297.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1] Length = 207 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 119/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G + +++ +F ++P + +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK + + L + ++ L+ N L+ARNIP I ++ G Sbjct: 121 NNILVLDALNFDAPKTKDFIAVLKNLSVDKKALVVTDGLNENVVLSARNIPGITVVEATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ +L+++KSA+E + + Sbjct: 181 VNVLDVVNHDQLIMTKSAVEKVGEVL 206 >gi|169830029|ref|YP_001700187.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41] gi|226730684|sp|B1HMX9|RL4_LYSSC RecName: Full=50S ribosomal protein L4 gi|168994517|gb|ACA42057.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41] Length = 207 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK + L L + LD N L+ARNIP + +L G Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L K+V +KSA+E +E+ Sbjct: 181 INVLDLLGHEKVVFTKSAVEKVEEVL 206 >gi|295702351|ref|YP_003595426.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319] gi|294800010|gb|ADF37076.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319] Length = 207 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I + + +F ++P +L + Q +R G SK K RSEV Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V++ L KTK +V + L + ++ L+ N L+ARNIP + ++ G Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ KLV++K A+E +E+ Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEEVL 206 >gi|172056141|ref|YP_001812601.1| 50S ribosomal protein L4 [Exiguobacterium sibiricum 255-15] gi|226730665|sp|B1YGV1|RL4_EXIS2 RecName: Full=50S ribosomal protein L4 gi|171988662|gb|ACB59584.1| ribosomal protein L4/L1e [Exiguobacterium sibiricum 255-15] Length = 207 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + ++ + Q +R G +KGRSEV Sbjct: 1 MPKVALLNQTGTQVGDIELADAVFGIEPNEAVVYDAIVMQQASRRQGTHDTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LALR ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLALRSALSSKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V++ L KTK +++ F AL + +++ + L+ RNIP + ++ G Sbjct: 121 NEFIVLEGLTIDAPKTKDMISVFAALSIERKVLVVTADYNETVVLSTRNIPGVTVVDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ K++ +K A+ +E+ Sbjct: 181 VNVLDLVAHDKVIFTKDAVARVEEVL 206 >gi|294496986|ref|YP_003560686.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551] gi|294346923|gb|ADE67252.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551] Length = 207 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +GE+ G I + + +F ++P +L + Q +R G SK K RSEV Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V++ L KTK +V + L + ++ L+ N L+ARNIP + ++ G Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ KLV++K A+E +E+ Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEEVL 206 >gi|229917357|ref|YP_002886003.1| 50S ribosomal protein L4 [Exiguobacterium sp. AT1b] gi|259491559|sp|C4KZP5|RL4_EXISA RecName: Full=50S ribosomal protein L4 gi|229468786|gb|ACQ70558.1| ribosomal protein L4/L1e [Exiguobacterium sp. AT1b] Length = 207 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P + +L + Q +R G +KGRSEV Sbjct: 1 MPKVALLNQTGSQVGEIELAEAIFGIEPNESVLYDAIVMQQASRRQGTHDTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LAL ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALLSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V++ L KTK + +L + ++ + LAARNIP + ++ G Sbjct: 121 NEIIVLEGLAFDAPKTKDMAAVLNSLSVERKALVVTADYNETIALAARNIPGVTVIDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ K++ +K A+ +E+ Sbjct: 181 VNVLDLVANDKVIFTKDAVAKVEEVL 206 >gi|134298094|ref|YP_001111590.1| 50S ribosomal protein L4 [Desulfotomaculum reducens MI-1] gi|172044220|sp|A4J112|RL4_DESRM RecName: Full=50S ribosomal protein L4 gi|134050794|gb|ABO48765.1| LSU ribosomal protein L4P [Desulfotomaculum reducens MI-1] Length = 206 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N++GE G + + +++F ++P + ++ + Q +R G +K R+EV Sbjct: 1 MPKVALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P +LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D+L KTK +V L AL++ + D N + +ARNI + L G Sbjct: 121 QNIIVLDSLTMDAPKTKDMVRILGNLKADKALVVTATR-DLNVEKSARNIEGVKPLKADG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ +KLV++K A+ +E+ Sbjct: 180 VNVYDLLKYTKLVITKDAVAKIEEVL 205 >gi|327438279|dbj|BAK14644.1| ribosomal protein L4 [Solibacillus silvestris StLB046] Length = 207 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV + G G I +++ IF ++P + +L + Q R G K K RS VA Sbjct: 1 MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L+ KTK + AL++S + +++ N L+ARNIP + +L +G Sbjct: 121 QNLVVLDALLFDAPKTKDFKSVLAALEISKKALFVTAEVNENAILSARNIPGVTVLTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L K+V ++ A++ +E+ Sbjct: 181 INVLDLLGHDKVVFTQDAVKKVEEVL 206 >gi|297618383|ref|YP_003703542.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680] gi|297146220|gb|ADI02977.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680] Length = 208 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G G I +S+++F ++P Q + +V++ Q R+G + +K R EV Sbjct: 1 MPKVPLYNMNGTQVGEIELSDEVFGIEPNQAAMHQVVKMQLANHRVGTAATKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +R GG FGP P + LPKK+R LAL+ ALS K Sbjct: 61 GRKPYRQKGTGRARAGSIRSPLWRKGGVVFGPQPRDYSYTLPKKIRRLALKSALSSKVKG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L + KTK +V AL + +I D N +ARNIP I + Sbjct: 121 RNMIVMDELTLEAPKTKRMVEILNALQVDRKALIVTADGDVNVYKSARNIPGIKPVRADF 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL KLV++K A+ +E+ Sbjct: 181 MSVYDILNHDKLVITKDAVAKVEEVL 206 >gi|20808659|ref|NP_623830.1| 50S ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4] gi|46577279|sp|Q8R7V5|RL4_THETN RecName: Full=50S ribosomal protein L4 gi|20517293|gb|AAM25434.1| Ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4] Length = 206 Score = 283 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE G I + + +F + ++ + + +R G +K R EV Sbjct: 1 MPKVPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D ++ KTK + + + +ALI+ Q ++N +L+ARN+PN L Sbjct: 121 NEIIVLDEFKLEQPKTKKVAELLKNFNAKSALIVV-PQGEKNVELSARNMPNAKALYANL 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ K +++K A+ +E+ F Sbjct: 180 LNTYDVLKYEKFIITKDAVAIVEEVF 205 >gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3] gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3] Length = 206 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ +K+ G K+K R+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D LV+ E KTK L+ F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI Sbjct: 121 DLIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|328543359|ref|YP_004303468.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1] gi|326413104|gb|ADZ70167.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 110/206 (53%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ LDG G I+VS++IF L+P+ ++ RV+RWQ +++ G K+KGRSEV+ T Sbjct: 1 MELEVKTLDGSAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKAKGRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGPV H LPKKVR+L L HALS K + Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVRDHGHDLPKKVRALGLAHALSTKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++++ + E KTK L +F L L +ALIIDG +LD NF LAARNIP +++LPVQGI Sbjct: 121 SLIIVEDAKAGEAKTKALKEKFGKLGLQSALIIDGSELDANFALAARNIPAVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ A+E+RFK Sbjct: 181 NVYDILRRNTLVLTKAAVSAIEERFK 206 >gi|52078610|ref|YP_077401.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|52783972|ref|YP_089801.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|319649115|ref|ZP_08003323.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2] gi|81667231|sp|Q65PA6|RL4_BACLD RecName: Full=50S ribosomal protein L4 gi|52001821|gb|AAU21763.1| ribosomal protein L4 [Bacillus licheniformis ATCC 14580] gi|52346474|gb|AAU39108.1| RplD [Bacillus licheniformis ATCC 14580] gi|317388815|gb|EFV69634.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2] Length = 207 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I +++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK + + L + +I + +L+ARN+P + ++ G Sbjct: 121 NNLIVLEDLNLDAVKTKEMAAILKGLSIEKKALIVTADANETVELSARNLPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KLV++K+A+E +E+ Sbjct: 181 INVLDVVGHEKLVMTKAAVEKVEEVL 206 >gi|307244773|ref|ZP_07526874.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis DSM 17678] gi|306491871|gb|EFM63923.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis DSM 17678] Length = 207 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G++ G I +++ IF ++ +L ++ Q KR G +K R+EV Sbjct: 1 MPKINVLNVSGQNVGEIELNDSIFNIEVNAHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P ++LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L + KTK +V F+ L+ + +++ + D N + RNI N+ V Sbjct: 121 NEIIVLDALSLEAPKTKEMVNTFKNLNAAKKVLVVTAENDANIVKSVRNIEGANVCHVST 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL C +++ A++ +E+ + Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206 >gi|121534760|ref|ZP_01666581.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1] gi|121306780|gb|EAX47701.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1] Length = 208 Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ G G I +S+ +F ++ + +L + + Q +R+G +K R V Sbjct: 1 MPKVAVYDITGAQTGEIELSDSVFGVEVNKAVLHQAVVMQLANQRLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P ++P+K R LAL+ ALS K S Sbjct: 61 GKKPWRQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYAISMPRKARRLALKSALSAKVQS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++V+++ E KTK +V L + + +I + D N +ARNIP + + Sbjct: 121 GEMVVLEDFTFAEPKTKNVVKMLDNLKVADDKALIILSEADENVIKSARNIPGVKAIAST 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 GINVYD+L K++++K A+ +E+ Sbjct: 181 GINVYDLLYHDKVLVTKGAVARIEEVL 207 >gi|169830437|ref|YP_001716419.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator MP104C] gi|226730652|sp|B1I1I9|RL4_DESAP RecName: Full=50S ribosomal protein L4 gi|169637281|gb|ACA58787.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator MP104C] Length = 207 Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V N++G+ G I +SE +F +L V+ Q +R G +K RSEV Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG FGP P + +PKKV+ LAL+ AL+ K + Sbjct: 61 GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D L KTK + L ++ + + N + +ARN+P + L + Sbjct: 121 GRILVLDALELPGPKTKEMARILANLKAGEGALVVTAERNVNVEKSARNLPGVKSLEARQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L L++++ A+ +E+ Sbjct: 181 LNVYDLLNHPHLIITRDAVARVEEVL 206 >gi|260886877|ref|ZP_05898140.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC 35185] gi|330839325|ref|YP_004413905.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185] gi|260863476|gb|EEX77976.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC 35185] gi|329747089|gb|AEC00446.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185] Length = 207 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N + G I +++ +F ++ G++ + + Q +R+G +K R V Sbjct: 1 MPKVAVYNSANQQVGDIELNDSVFGVEMNAGLVHQAVVMQLASRRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +PKK R LA++ ALSDK S Sbjct: 61 GRKPWRQKGTGRARSGSTRSPLWVGGGTVFGPQPRSYAFRMPKKQRRLAIKCALSDKVAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D+L KTK +V + +I + N +L++RNIP + + G Sbjct: 121 GDFIVLDDLQFDAPKTKSVVKMLGDFGVDAKSLIITLDENENVELSSRNIPGVKAINTMG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +KL ++K+AIE +E+ Sbjct: 181 LNVYDILNHTKLFITKAAIEKIEEVL 206 >gi|15965110|ref|NP_385463.1| 50S ribosomal protein L4 [Sinorhizobium meliloti 1021] gi|307314360|ref|ZP_07593966.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C] gi|307322072|ref|ZP_07601448.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83] gi|46577284|sp|Q92QG9|RL4_RHIME RecName: Full=50S ribosomal protein L4 gi|15074290|emb|CAC45936.1| Probable 50S ribosomal protein L4 [Sinorhizobium meliloti 1021] gi|306892254|gb|EFN23064.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83] gi|306899058|gb|EFN29700.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C] Length = 206 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 124/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G KSKGR+EV+ TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKK+R+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 DI+VID+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 DIIVIDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|328725484|ref|XP_003248496.1| PREDICTED: 50S ribosomal protein L4-like [Acyrthosiphon pisum] Length = 267 Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +DG G I +++ +F ++P Q +L + Q R G K RS V Sbjct: 61 MANIDVLKVDGSKSGSIELNDSVFGIEPNQHVLFEAVNLQRASLRQGTHAVKNRSAVRGG 120 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 121 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSSKVSG 180 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V++ KTK L+LS ++ +D N +L+ARNIP + ++ Q Sbjct: 181 NELTVLEAFNFDAPKTKEFKNVMSNLELSKKVLFIVDTVDSNVELSARNIPGVKVIDAQS 240 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DIL SK+V++K+A++ +E+ Sbjct: 241 LNVLDILDSSKVVITKAAVDKVEEVL 266 >gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58] gi|46576833|sp|Q8UE19|RL4_AGRT5 RecName: Full=50S ribosomal protein L4 gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58] Length = 206 Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ +K+ G K+K RSEV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D LV+ E KTK L+ F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|315649698|ref|ZP_07902782.1| ribosomal protein L4/L1e [Paenibacillus vortex V453] gi|315274886|gb|EFU38262.1| ribosomal protein L4/L1e [Paenibacillus vortex V453] Length = 207 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + ++E +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELNEAVFGIEPNTHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D L KTK L + +I D N L+ARNIP + + G Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L +L+++K A++ +E+ Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEEVL 206 >gi|238916266|ref|YP_002929783.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750] gi|259491557|sp|C4Z2T1|RL4_EUBE2 RecName: Full=50S ribosomal protein L4 gi|238871626|gb|ACR71336.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750] Length = 206 Score = 280 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q R G +K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + +AL ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D E KTK L + AL++ + ++N L+ RNIP + + Sbjct: 121 NKIVVLDAFNLDEIKTKKFAEVMSNLKVDKALVVIEGE-NKNVVLSGRNIPTVKVSATNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L+ LV++K+A+E LE+ + Sbjct: 180 INTYDVLKYETLVVTKAAVEKLEEVY 205 >gi|261409520|ref|YP_003245761.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10] gi|329922057|ref|ZP_08277850.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5] gi|261285983|gb|ACX67954.1| ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10] gi|328942440|gb|EGG38704.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5] Length = 207 Score = 280 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + ++E +F ++P +L + Q R G K KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELNEAVFGIEPNAHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P LPKKVR LA++ ALS K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+D L KTK L + +I D N L+ARNIP + + G Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L +L+++K A++ +E+ Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEEVL 206 >gi|147676656|ref|YP_001210871.1| 50S ribosomal protein L4 [Pelotomaculum thermopropionicum SI] gi|189029511|sp|A5D5J1|RL4_PELTS RecName: Full=50S ribosomal protein L4 gi|146272753|dbj|BAF58502.1| ribosomal protein L4 [Pelotomaculum thermopropionicum SI] Length = 206 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N +GE G +++ ++IF ++ + +L + +R+G +K RSEV Sbjct: 1 MPTVALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P ++LP+KVR LAL+ ALS K S Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L + KTK + L + +AL++ + D + +ARNIPNI + Sbjct: 121 GDILVLDELKLDQPKTKEMARILNNLKVDDALLVT-AEKDEAVERSARNIPNIKPVQAAL 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KLV+++ A+ +E+ F Sbjct: 180 LNVYDILAYDKLVMTRDAVARVEEVF 205 >gi|150396208|ref|YP_001326675.1| 50S ribosomal protein L4 [Sinorhizobium medicae WSM419] gi|166199909|sp|A6U860|RL4_SINMW RecName: Full=50S ribosomal protein L4 gi|150027723|gb|ABR59840.1| ribosomal protein L4/L1e [Sinorhizobium medicae WSM419] Length = 206 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G K+KGR+EV+ TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+++D+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 EIIIVDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|28212174|ref|NP_783118.1| 50S ribosomal protein L4 [Clostridium tetani E88] gi|46577246|sp|Q890P0|RL4_CLOTE RecName: Full=50S ribosomal protein L4 gi|28204618|gb|AAO37055.1| LSU ribosomal protein L1E(= L4P) [Clostridium tetani E88] Length = 206 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G +S+ +F ++ + +L +V+ Q KR G SK R+EV+ Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK ++ +A++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+++++L + KTK +V A + LI+ + ++N +ARNI + +LPV Sbjct: 121 NEIVILESLEADAPKTKEIVKMLAAFNAKKTLIVT-EESNKNIYKSARNIEGVTVLPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDILR K +++K A+ +E+ + Sbjct: 180 INVYDILRYDKFIITKDAVSKIEEVY 205 >gi|296333114|ref|ZP_06875568.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672816|ref|YP_003864487.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str. W23] gi|296149730|gb|EFG90625.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411059|gb|ADM36177.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str. W23] Length = 207 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206 >gi|222148367|ref|YP_002549324.1| 50S ribosomal protein L4 [Agrobacterium vitis S4] gi|254803708|sp|B9JVN8|RL4_AGRVS RecName: Full=50S ribosomal protein L4 gi|221735355|gb|ACM36318.1| 50S ribosomal protein L4 [Agrobacterium vitis S4] Length = 206 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 161/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G D G +S+S+ IF L+P+Q I+AR++RWQ +K+ G K+K R+EV+ TG Sbjct: 1 MELNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS KF ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKFKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D LV+ + KTK V F AL L NAL+I G +LD NF+LAA NIPNI++LPVQGI Sbjct: 121 ELIIVDQLVAADAKTKAAVGVFEALGLKNALVIGGVELDVNFKLAAANIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|295398289|ref|ZP_06808331.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC 11563] gi|294973428|gb|EFG49213.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC 11563] Length = 207 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 123/206 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I++++++FA++P + + V+ Q R G K KGRSEV+ Sbjct: 1 MANITLFKQDGSQAGEITLNDEVFAIEPNENAIYDVVIMQQASLRQGTHKVKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG+AFGP P + LP+KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGRAFGPTPRSYAYKLPRKVRRLALRSALSTKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V+D L + KTK L + N +++ + + N QL+ARN+PN+ ++ Sbjct: 121 NNFIVVDELAFETPKTKLFQEVLNNLQVENKVLVVINKDNDNAQLSARNLPNVKVVDENN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D++ K++++K+A+ +E+ Sbjct: 181 VNVFDLVNSEKVIITKAALSNVEEVL 206 >gi|78043328|ref|YP_361117.1| 50S ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901] gi|109893583|sp|Q3A9R7|RL4_CARHZ RecName: Full=50S ribosomal protein L4 gi|77995443|gb|ABB14342.1| ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901] Length = 206 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G G I + ++IF + +L V +R G +K R EV+ Sbjct: 1 MPKVPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P +++PKKVR AL+ ALSDK Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L KTK ++ L ++ +I D + +ARNIP ++++ Sbjct: 121 NNLIVVDSLTFAAPKTKEMIRVLNNLKVNGKTLIVTAGYDEIVEKSARNIPGVSVMTAPS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N +L KL++++ A+ +E+ F Sbjct: 181 LNALSLLNHDKLIMTRDAVLKVEEVF 206 >gi|218135280|ref|ZP_03464084.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC 43243] gi|217990665|gb|EEC56676.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC 43243] Length = 206 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGSLELNDAIFGVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTSRVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+V+D + E KTK + L L AL++ G D N L+ARNIP++ + Sbjct: 121 SKIVVLDEIKFNEIKTKNFANVMKNLKLDKALMVIG-DNDANVILSARNIPDVKVSQPNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ LV++K A+ +E+ + Sbjct: 180 INVYDILKYDTLVVTKDAVAKIEEVY 205 >gi|258513641|ref|YP_003189863.1| 50S ribosomal protein L4 [Desulfotomaculum acetoxidans DSM 771] gi|257777346|gb|ACV61240.1| ribosomal protein L4/L1e [Desulfotomaculum acetoxidans DSM 771] Length = 206 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N+ GE G +++ +++F ++ + +L + Q +R G +K R EV Sbjct: 1 MPTVALFNIKGEQVGEVALKDEVFGIEVNESVLHDAVVMQLAGRRQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG FGP P + LPKKVR LAL+ ALS K + Sbjct: 61 GKKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRTYKYKLPKKVRRLALKSALSSKVLA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I V+D L + KTK +V + L + AL++ D N +ARNIP I + G Sbjct: 121 GNIKVLDALSMEMPKTKEMVGILKNLQVDKALLVI-ADKDMNVIKSARNIPGIKPVGAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ + LV++K A+ +E+ Sbjct: 180 VNVYDLLKHTTLVITKDAVSKVEEVL 205 >gi|83594019|ref|YP_427771.1| 50S ribosomal protein L4 [Rhodospirillum rubrum ATCC 11170] gi|109893631|sp|Q2RQW1|RL4_RHORT RecName: Full=50S ribosomal protein L4 gi|83576933|gb|ABC23484.1| LSU ribosomal protein L4P [Rhodospirillum rubrum ATCC 11170] Length = 206 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 132/206 (64%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V+ LDG+D G I +S+ +F L + +L R++RWQ R++ G K+KG SE++ T Sbjct: 1 MKCDVKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTG AR SK QFRGG FGPV H L KKVR L L+ ALS K + Sbjct: 61 AKPFKQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D +S+ KTK L+ + + L L L IDG +++ F LAARNI +++LP QG Sbjct: 121 QLIVLDQAISESGKTKDLLAQLKVLGLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A++ LE+R + Sbjct: 181 NVYDILRRDTLVLTKEAVKHLEERLQ 206 >gi|154483186|ref|ZP_02025634.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC 27560] gi|149735994|gb|EDM51880.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC 27560] Length = 206 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G + G I +S+ +F ++ + ++ + + Q R G K+K RSEV+ Sbjct: 1 MAKVSVLNMEGSEVGTIELSDAVFGVEVNEHLVHQAVLSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + +AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKMNKKEKRIALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KTK L+ AL++ + D N +A+NIP + Sbjct: 121 GKLIVVDELKFEAPKTKEFAKVMANLNTKKALVVL-NENDANTVKSAKNIPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+ K+A+ +E+ + Sbjct: 180 INVYDILKYDTVVVEKAAVATIEEVY 205 >gi|16077185|ref|NP_387998.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|221307929|ref|ZP_03589776.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|221312250|ref|ZP_03594055.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317184|ref|ZP_03598478.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321447|ref|ZP_03602741.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313788|ref|YP_004206075.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5] gi|1173050|sp|P42921|RL4_BACSU RecName: Full=50S ribosomal protein L4 gi|786154|dbj|BAA08832.1| ribosomal protein L4 [Bacillus subtilis] gi|1165304|gb|AAC45957.1| L4 [Bacillus subtilis] gi|2632384|emb|CAB11893.1| ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168] gi|291482490|dbj|BAI83565.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195] gi|320020062|gb|ADV95048.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5] Length = 207 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206 >gi|90417762|ref|ZP_01225674.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1] gi|90337434|gb|EAS51085.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 116/206 (56%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++++LDG+D G ++++DIF L+P++ IL R++RWQ +++ G ++ GR+E+A TG Sbjct: 1 MDVTIKSLDGKDAGTATLADDIFGLEPREDILQRMVRWQLAKRQQGSHQTLGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K+Y QKGTGRARH S QFRGGGKA GPV H LPKKVR+LALRHALS K S Sbjct: 61 AKLYRQKGTGRARHGSARAPQFRGGGKAHGPVSRSHAHDLPKKVRALALRHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID L + E KTK +V F L L+NAL I G +LD NF +ARNIP +++LPVQGI Sbjct: 121 GIVVIDELKAAEGKTKAMVKTFADLGLTNALFIGGAELDANFTRSARNIPQMDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRQTLVLSKAAVEALEERFK 206 >gi|167629468|ref|YP_001679967.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1] gi|226730671|sp|B0TC57|RL4_HELMI RecName: Full=50S ribosomal protein L4 gi|167592208|gb|ABZ83956.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1] Length = 207 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I +++ IF ++P + ++ + + Q R G K K R EV+ Sbjct: 1 MPKVALYNTEGAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGG FGP P A+PKKVR LAL+ ALSDK S Sbjct: 61 GKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + L + ++ +D +ARNIP ++ + G Sbjct: 121 GNLIVVDALEMDAPKTKVIAGILNKLKVERKALLVTADIDETVFKSARNIPGVSPVEAVG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL KLV++K+A+ +E+ F Sbjct: 181 INVYDILNHDKLVITKNAVAKVEEVF 206 >gi|227821757|ref|YP_002825727.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234] gi|254803749|sp|C3MAY1|RL4_RHISN RecName: Full=50S ribosomal protein L4 gi|227340756|gb|ACP24974.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234] Length = 206 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 123/206 (59%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +++ G K+KGR+EVA TG Sbjct: 1 MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+V+D+LV+ E KTK L F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI Sbjct: 121 EIIVLDDLVANEAKTKALAGAFASLGLTNALIIGGAEIENNFKLAAQNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|83591275|ref|YP_431284.1| 50S ribosomal protein L4P [Moorella thermoacetica ATCC 39073] gi|109893605|sp|Q2RFP8|RL4_MOOTA RecName: Full=50S ribosomal protein L4 gi|83574189|gb|ABC20741.1| LSU ribosomal protein L4P [Moorella thermoacetica ATCC 39073] Length = 207 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N+ G+ G + + + +F + + +L + Q +R G + ++G ++V+ Sbjct: 1 MPRVALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + LPKKVR LALR AL+ K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L ++ +TK + + L+ N ++ + N +L+ARN+P + L G Sbjct: 121 GNIIVLDELKMEKPRTKDMAHILKNLNAENKALVVTATREPNVELSARNLPGVRFLTSDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L KLV++K A+ +++ Sbjct: 181 INVYDLLAHDKLVITKDAVARVQEVL 206 >gi|90424936|ref|YP_533306.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB18] gi|109893630|sp|Q211E9|RL4_RHOPB RecName: Full=50S ribosomal protein L4 gi|90106950|gb|ABD88987.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB18] Length = 206 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 112/206 (54%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S++IF L P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI++ + KTK LV F L L++ALIIDG +L+ F +AARNIPNI++LP+QGI Sbjct: 121 GLIVIESATLEAAKTKALVGHFSGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|154245624|ref|YP_001416582.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2] gi|226731446|sp|A7IFY2|RL4_XANP2 RecName: Full=50S ribosomal protein L4 gi|154159709|gb|ABS66925.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2] Length = 206 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V+ LDG + G +++S++IF L+P+ IL R + WQ R++ G ++KGRSE+ T Sbjct: 1 MEITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGGG+AFGPV LPKKVR+LAL+HALS K + Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+D + + KTK L F L L + LI+DG Q+++N LAARN+P +++LP+QGI Sbjct: 121 QIIVLDKVSLDDPKTKALKEHFAKLGLESVLIVDGAQVEQNVALAARNLPYVDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A++ALE RFK Sbjct: 181 NVYDILRRDTLVLTKAAVDALEARFK 206 >gi|39936312|ref|NP_948588.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009] gi|192292036|ref|YP_001992641.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris TIE-1] gi|46577158|sp|P61068|RL4_RHOPA RecName: Full=50S ribosomal protein L4; AltName: Full=RRP-L4 gi|226730715|sp|B3QBX9|RL4_RHOPT RecName: Full=50S ribosomal protein L4 gi|39650167|emb|CAE28690.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009] gi|192285785|gb|ACF02166.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris TIE-1] Length = 206 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 113/206 (54%), Positives = 146/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S++IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK LV F L L +ALIIDG +++ F AARNIPNI++LPVQGI Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGLGLESALIIDGAEVNNGFAAAARNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRKKLVLTKAAVDALEARFK 206 >gi|210623189|ref|ZP_03293628.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275] gi|210153726|gb|EEA84732.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275] Length = 207 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++G++ G I + + IF ++ + +L ++ Q +R G +K R+EV Sbjct: 1 MPKINVMNINGQNVGEIELCDSIFNVEVNEHVLYEAVKCQLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKCALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK V + S ++ + + N +ARNI + V Sbjct: 121 NEIIVLDALTMDAPKTKEFVAILNNIKASRKALVVTAEKNENVIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL V++ A++ +E+ + Sbjct: 181 LNVYDILNHDTFVITTDAVKKVEEVY 206 >gi|311070764|ref|YP_003975687.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942] gi|310871281|gb|ADP34756.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942] Length = 207 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I ++ L+ARNIP + ++ G Sbjct: 121 NNIVVLEDLTLDAVKTKEMAAILKGLSVEKKALIVTADVNETVSLSARNIPGVTVVQADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206 >gi|157690901|ref|YP_001485363.1| 50S ribosomal protein L4 [Bacillus pumilus SAFR-032] gi|194017590|ref|ZP_03056201.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061] gi|166990946|sp|A8F986|RL4_BACP2 RecName: Full=50S ribosomal protein L4 gi|157679659|gb|ABV60803.1| ribosomal protein L4 [Bacillus pumilus SAFR-032] gi|194010862|gb|EDW20433.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061] Length = 207 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 114/204 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADANETVALSARNIPGVTVVEANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204 >gi|293375390|ref|ZP_06621671.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis PC909] gi|325844472|ref|ZP_08168199.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1] gi|292645943|gb|EFF63972.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis PC909] gi|325489146|gb|EGC91530.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1] Length = 207 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 122/206 (59%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I ++E IF ++P + + + Q R G K+K R+EV Sbjct: 1 MPQVALYNQQGAQVGEIVLNEAIFGIEPHKQAMFDAVIMQRASMRQGTHKTKTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGPVP + L KKVR LAL+ AL+ K Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWRGGGIVFGPVPRSYAYKLNKKVRRLALKSALATKVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D LV + KTK ++ AL++++ ++ + + +L+ RNIP + +L V Sbjct: 121 NEIVVLDQLVFEAPKTKQMINVLGALNVTSKALVVTAEENAAVELSTRNIPGVKVLTVSQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+L +KLV+++ A++ +E+ Sbjct: 181 LNVLDLLDATKLVITQDAVKKIEEVL 206 >gi|220921900|ref|YP_002497201.1| 50S ribosomal protein L4 [Methylobacterium nodulans ORS 2060] gi|254803744|sp|B8IS86|RL4_METNO RecName: Full=50S ribosomal protein L4 gi|219946506|gb|ACL56898.1| ribosomal protein L4/L1e [Methylobacterium nodulans ORS 2060] Length = 206 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + LDG D G + + E IF L+P+ +L R +RWQ +++ G K K RSE++ T Sbjct: 1 MKFEITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG +AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKAKDA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L F L LSNALII G ++D NF AARN+P+I++LPVQGI Sbjct: 121 SLIVVDDVRLEDGKTKALKECFGKLGLSNALIIGGTEVDENFGRAARNLPSIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE RFK Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206 >gi|164686528|ref|ZP_02210556.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM 16795] gi|164604397|gb|EDQ97862.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM 16795] Length = 207 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ +F ++ + +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNIQGQNVGEIELSDAVFGVEVNEHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ AL+ K + Sbjct: 61 GRKPWRQKGTGRARQGSIRAVQWIGGGVAFAPKPRSYRYTLPKKVRRLAMKSALTSKVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK T ++ + ++ + + N +A NIPN+ V Sbjct: 121 NEMIVLDALTMDAPKTKEFATILNNVNAAKKALVVMAEKNENVIKSAANIPNVETALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +++ A++ +E+ + Sbjct: 181 INVYDILKYDSFIITTDAVKKVEEVY 206 >gi|297582451|ref|YP_003698231.1| 50S ribosomal protein L4/L1e [Bacillus selenitireducens MLS10] gi|297140908|gb|ADH97665.1| ribosomal protein L4/L1e [Bacillus selenitireducens MLS10] Length = 207 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + ++ + Q R G KGRS+V Sbjct: 1 MPKVNLYNQTGSQAGDIELNDAVFGIEPNESVVYDAIIMQQASMRQGTHAVKGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + + GGG FGP P + +PKK R LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGTNRSPIWVGGGVVFGPTPRSYAYNMPKKQRRLALKSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V++ L KTK + AL +++ + N L+ARN+PN+ + +G Sbjct: 121 DAIYVMEGLSFDAPKTKEMKKVLEALSAGKKVLVVTADYEDNVALSARNLPNVKFVTAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ LV+++ A++ +E+ Sbjct: 181 VNVLDLVNFESLVITQDAVKQVEEVL 206 >gi|115525584|ref|YP_782495.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisA53] gi|122295409|sp|Q07KL9|RL4_RHOP5 RecName: Full=50S ribosomal protein L4 gi|115519531|gb|ABJ07515.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisA53] Length = 206 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 112/206 (54%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G+D G + +S++IF L P+ I+ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR++AL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID KTK LV F L L++ALIIDG +L+ F +AARNIPNI++LP+QGI Sbjct: 121 GLIVIDQATLDSAKTKALVGHFAGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|114704485|ref|ZP_01437393.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506] gi|114539270|gb|EAU42390.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506] Length = 206 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++++ LDG D G +++SE IF L P+Q IL R++R+Q +++ G + GRS+VA TG Sbjct: 1 MDVTIKKLDGADAGTVTLSEAIFGLDPRQDILHRMVRYQLAKRQQGTHSTLGRSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHS+ QFRGGG A GP P LPKK+R+LAL+HALS K S Sbjct: 61 AKMYRQKGTGRARHSTAKAPQFRGGGIAHGPTPRSHAIDLPKKLRALALKHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID L + E KTK +V F L + NALII G +LD+NF A+RNI I++LPVQGI Sbjct: 121 GLIVIDELKADEGKTKSMVKSFAGLGIENALIIGGSELDQNFARASRNIAKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSKSA+EALE+RFK Sbjct: 181 NVYDILRRQTLVLSKSAVEALEERFK 206 >gi|118444236|ref|YP_877199.1| 50S ribosomal protein L4 [Clostridium novyi NT] gi|166234658|sp|A0PXU7|RL4_CLONN RecName: Full=50S ribosomal protein L4 gi|118134692|gb|ABK61736.1| ribosomal protein L4/L1 family [Clostridium novyi NT] Length = 206 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N++G+ G + ++E +FA++ + +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 NELVVLESLELDAPKTKEMVKMINAFEGKKPLIVV-PESNEVIYKSVRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205 >gi|170738702|ref|YP_001767357.1| 50S ribosomal protein L4 [Methylobacterium sp. 4-46] gi|226730694|sp|B0UHW8|RL4_METS4 RecName: Full=50S ribosomal protein L4 gi|168192976|gb|ACA14923.1| ribosomal protein L4/L1e [Methylobacterium sp. 4-46] Length = 206 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 110/206 (53%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + LDG + G + V+E IF L+P+ +L R +RWQ +++ G K K RSE++ T Sbjct: 1 MKFEITTLDGGEAGSVEVNEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG +AFGPV H LPKKVR+LALRHALS K + Sbjct: 61 KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKARAA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L RF AL SNALII G ++D NF AARN+P+I++LPVQGI Sbjct: 121 SLVVVDDVRLEDGKTKALKDRFGALGWSNALIIGGAEVDENFGRAARNLPSIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE RFK Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206 >gi|160881784|ref|YP_001560752.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg] gi|189029497|sp|A9KJJ3|RL4_CLOPH RecName: Full=50S ribosomal protein L4 gi|160430450|gb|ABX44013.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg] Length = 206 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G++ G + +++ IF ++ + ++ + Q KR G +K R+EV+ Sbjct: 1 MANVKVYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P + +K +SLA++ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ E KTK L ++ AL++ + D N L+ARNIP + Sbjct: 121 QKLIVLDSMNMDEIKTKKFKAVLENLKVNKALVVLD-KKDENVILSARNIPTVRTATSNA 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDI++ LV++K A+ +E+ + Sbjct: 180 INVYDIVKYDTLVITKDAVAQIEEVY 205 >gi|51894209|ref|YP_076900.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863] gi|81610342|sp|Q67JU4|RL4_SYMTH RecName: Full=50S ribosomal protein L4 gi|51857898|dbj|BAD42056.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863] Length = 207 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N +G G I++S+ +F + G+L V++ KR G + +K R+EV+ Sbjct: 1 MPKVAVYNKEGATVGEITLSDAVFGAEVNPGLLHEVVQMYLANKRQGTADTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P ++PKK R ALR ALS K S Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPREYGWSMPKKARRAALRQALSAKVKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D + KT+ + T + L + + I Q D N +ARNIP + + + Sbjct: 121 GELIVVDKFELEAPKTREVATLLKNLKVDGSAFIVTAQEDVNIYKSARNIPGVRVNAARN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L SKLV ++ A+ +E+ Sbjct: 181 LNAYDVLAASKLVFTQDAVAKVEEVL 206 >gi|302390959|ref|YP_003826779.1| 50S ribosomal protein L4P [Acetohalobium arabaticum DSM 5501] gi|302203036|gb|ADL11714.1| LSU ribosomal protein L4P [Acetohalobium arabaticum DSM 5501] Length = 209 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 116/207 (56%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M EL++ + +G G + +++ IF ++ + ++ + Q KR G + +K R+EV Sbjct: 1 MPELTLFDAEGSQVGEVELNQSIFDVEINEHVVHEAVTAQLAAKRAGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P +PKKV+ LA++ AL+ K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWVGGGTTFGPQPRDYSKDIPKKVKRLAVKSALTAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ V+D + KTK +V ALD +++ + D N +ARNIP++ +L Sbjct: 121 EELTVVDGFNFDQPKTKQMVKVLEALDAKDKKVLVITAEKDDNLYKSARNIPDVKVLLGS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +++++K AI+ +E+ Sbjct: 181 AVNVYDVLDNEQIIITKEAIKKVEEVL 207 >gi|304405615|ref|ZP_07387274.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9] gi|304345654|gb|EFM11489.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9] Length = 207 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G G + +++ +F ++P +L + Q +R G K+KGRSEV Sbjct: 1 MPKVALYNVSGSQVGEVELADSVFGIQPNTHVLHSAVLLQQAAERRGTHKTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LP+KVR LA++ ALS K S Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPRKVRRLAIKSALSTKVIS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK L ++ ++ + N L+ARNIP + + +G Sbjct: 121 NEIVVLDQLALATPKTKEFAAILNNLKVARKALVVTANYEDNVALSARNIPGVKFVAAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L+ +L+++K A+E +++ Sbjct: 181 INVLDVLQYDRLIITKEAVEKVQEVL 206 >gi|289423702|ref|ZP_06425501.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius 653-L] gi|289155952|gb|EFD04618.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius 653-L] Length = 207 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G++ G I +++ IF ++ + +L ++ Q KR G +K R+EV Sbjct: 1 MPKINVLNVSGQNVGEIELNDSIFDIEVNEHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P ++LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+V+D L + KTK +V F+ ++ + ++ + D N + RNI N+ V Sbjct: 121 KEIIVLDALSLEAPKTKEIVNLFKNVNAAKKTLVVTAENDVNVVKSVRNIEGANVAHVST 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL C +++ A++ +E+ + Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206 >gi|209884814|ref|YP_002288671.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5] gi|226730700|sp|B6JET4|RL4_OLICO RecName: Full=50S ribosomal protein L4 gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5] Length = 206 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 111/206 (53%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G +++S+ IF L+P+ I+ RV+ WQ +++ G K+KGR+E+A TG Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV + LPKKVR+L LRHALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN K+ KTK L+ F L L++ALI+DG +++ F AARNIP+I++LP+QGI Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|218460209|ref|ZP_03500300.1| 50S ribosomal protein L4 [Rhizobium etli Kim 5] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 126/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNL++ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLIAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|110634029|ref|YP_674237.1| 50S ribosomal protein L4 [Mesorhizobium sp. BNC1] gi|123057912|sp|Q11HQ3|RL4_MESSB RecName: Full=50S ribosomal protein L4 gi|110285013|gb|ABG63072.1| LSU ribosomal protein L4P [Chelativorans sp. BNC1] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V L G+D G + VS++IF L P++ IL RV+RWQ +++ G K+KGR+E+A TG Sbjct: 1 MDLKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHSS QFRGGGKA GPVP H LPKKVR+L L+HALS K S Sbjct: 61 AKMYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D+L KE KTK LV F L ++NAL+I G ++D F+ AA NIPNI++LP+QGI Sbjct: 121 NLIIVDDLAIKEAKTKALVESFAKLGVTNALMIGGAEIDAGFKRAAANIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|319789239|ref|YP_004150872.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1] gi|317113741|gb|ADU96231.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1] Length = 208 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V +L+ ++ G + + ++I +Q + ++WQ ++R G +K R EV G Sbjct: 1 MEIKVVDLNNKETGTVQIKDEIANAPIKQHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRAR S Q+ GGG GP P + LPKKVR +AL+ ++ + Sbjct: 61 RKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYSYNLPKKVRKVALKSVVAGRIQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +V+++ ++ KTK V + L L S L++ +LD N L+ RN+PN+ +LPV+ Sbjct: 121 NFIVVEDFSFEKPKTKQAVEFLKNLGLENSKVLLVVPAELDENTYLSFRNLPNVKVLPVE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL K V+ KS + +E+R Sbjct: 181 GLNVYDILCYDKCVVFKSILPKIEERL 207 >gi|260893371|ref|YP_003239468.1| ribosomal protein L4/L1e [Ammonifex degensii KC4] gi|260865512|gb|ACX52618.1| ribosomal protein L4/L1e [Ammonifex degensii KC4] Length = 207 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V NL GE G + + E++F ++P ++ V+ +R G +K R EV Sbjct: 1 MPKATVYNLAGEPVGEMELKEEVFGIEPNPYVVHEVVVMHLANRRRGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P + +PKKVR LAL+ LSDK + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRKGGVVFGPKPRDYDYTVPKKVRRLALKSVLSDKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++ L + KTK + +++ G D +LA N+ + LPV Sbjct: 121 GNLVVLEELRLEAPKTKLAKELLSRFGVETGVLLVGADPDPVVKLATANLEGVKFLPVNN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR K+ +++ A+ +E+ Sbjct: 181 LNVYDLLRYPKVFITREALARVEEVL 206 >gi|91977651|ref|YP_570310.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB5] gi|123762621|sp|Q134T0|RL4_RHOPS RecName: Full=50S ribosomal protein L4 gi|91684107|gb|ABE40409.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB5] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 114/206 (55%), Positives = 148/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIVQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID + KTK LV F L L+NALIIDG +++ F AARNIPNI++LPVQGI Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNNGFATAARNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+K+A++ALE RFK Sbjct: 181 NVYDIVRRRKLVLTKAALDALEARFK 206 >gi|316933528|ref|YP_004108510.1| 50S ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1] gi|315601242|gb|ADU43777.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 111/206 (53%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G + G + +S++IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGNEAGSVQLSDEIFGLEPRTDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK LV F L L +ALI+DG +++ F AARNIPNI++LP+QGI Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGLGLESALIVDGAEVNTGFAAAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRKKLVLTKAAVDALEARFK 206 >gi|86357306|ref|YP_469198.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42] gi|109893627|sp|Q2K9L5|RL4_RHIEC RecName: Full=50S ribosomal protein L4 gi|86281408|gb|ABC90471.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42] gi|327191387|gb|EGE58413.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|154684635|ref|YP_001419796.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens FZB42] gi|308172008|ref|YP_003918713.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7] gi|166234633|sp|A7Z0N9|RL4_BACA2 RecName: Full=50S ribosomal protein L4 gi|154350486|gb|ABS72565.1| RplD [Bacillus amyloliquefaciens FZB42] gi|307604872|emb|CBI41243.1| ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7] gi|328551818|gb|AEB22310.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208] Length = 207 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I ++ +F ++P + ++ + Q R G K K RSEV Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+++L KTK + + L + +I + L+ARNIP + ++ G Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSARNIPGVTVVQANG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+++K+A+E +E+ Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206 >gi|255659504|ref|ZP_05404913.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM 20544] gi|260848056|gb|EEX68063.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM 20544] Length = 207 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G I +++ IF ++ G+L + + Q +R+G +K R V Sbjct: 1 MATVAVYDITNNQVGDIELNDSIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRGFVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P ++P+K R LAL+ ALSDK S Sbjct: 61 GRKPWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLALKCALSDKVKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L KTK +V + + + N + +ARNIP + G Sbjct: 121 GDLIVLESLDFDAPKTKQVVKMLGDFGVDSKALFITADEAENVEKSARNIPGAKAIQALG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL ++K AI +E+ F Sbjct: 181 LNVYDILHHDKLFITKDAITRIEEVF 206 >gi|254517471|ref|ZP_05129527.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA] gi|226911220|gb|EEH96421.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA] Length = 206 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G I +++++F ++ + +V+ KR G +K R+EV Sbjct: 1 MPTVGLFNQEGKQVGDIQLNDNVFGVEVNTDAMHQVVVALLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRMSVPKSMRRVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L + KTK +V +A D LII G + + +ARNI ++ ++PV Sbjct: 121 GQMVVLETLAFEAPKTKKMVEVLKAFDAKKTLIITG-ESNEVLYKSARNIADVQIMPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205 >gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2] gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2] Length = 206 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 113/206 (54%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G +++S++IF L+P++ I+ RV+ WQ +++ G K+KGR+EV TG Sbjct: 1 MELNVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+L LRHALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VIDN K+ KTK L+ F L L++ALI+DG +++ F AARNIP+I++LP+QGI Sbjct: 121 GLVVIDNAELKDAKTKALIAHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|218672011|ref|ZP_03521680.1| 50S ribosomal protein L4 [Rhizobium etli GR56] Length = 206 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 164/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|190891356|ref|YP_001977898.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652] gi|226730712|sp|B3PWS2|RL4_RHIE6 RecName: Full=50S ribosomal protein L4 gi|190696635|gb|ACE90720.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652] Length = 206 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 163/206 (79%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVATEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|226309809|ref|YP_002769703.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599] gi|254803719|sp|C0ZII1|RL4_BREBN RecName: Full=50S ribosomal protein L4 gi|226092757|dbj|BAH41199.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599] Length = 207 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P +L + Q +R G K RSEV Sbjct: 1 MPKVALYNQTGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG FGP P + L +KVR LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++ L KTK + +L + ++I + D+N LA+RNIP ++ G Sbjct: 121 NELLVLEALNFAAPKTKEMTAVLSSLKVDRKVLIVTSEYDQNVALASRNIPGTKIVDAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ K+++++ A+ +E+ Sbjct: 181 INVLDLVAHDKVIVTREAVAKVEEVL 206 >gi|323490624|ref|ZP_08095829.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2] gi|323395716|gb|EGA88557.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2] Length = 207 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++P + +L + Q R G K K RSEVA Sbjct: 1 MTKVALLNQTGSQVGEIELNDHVFGIQPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LALR ALS Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALRSALSSAVVG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV++ L KTK L + + LD N +ARN+ + ++ G Sbjct: 121 ENLMVLEGLTFDAPKTKSFNQLIADLSIGKKALFVTADLDENVAKSARNLKGMTVVAADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L K+V++K+A+E +E+ Sbjct: 181 INVLDLLGHDKIVMTKAAVEKIEEVL 206 >gi|222085676|ref|YP_002544206.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84] gi|254803707|sp|B9JDS9|RL4_AGRRK RecName: Full=50S ribosomal protein L4 gi|221723124|gb|ACM26280.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84] Length = 206 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 124/206 (60%), Positives = 159/206 (77%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ +KR G K++GR+EV+ TG Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKKRQGTHKAQGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LR ALS K + Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKLKAE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++DNLV+ + KTK L F L L+NAL I G +LD NF+LAA NIPNI++LPVQGI Sbjct: 121 DVIILDNLVAADAKTKALAGAFETLGLTNALFIGGAELDSNFKLAAANIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|225574701|ref|ZP_03783311.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM 10507] gi|225038091|gb|EEG48337.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM 10507] Length = 206 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G I +++ +F ++ + ++ + Q KR G K+K RSEV Sbjct: 1 MANVSVLNMEGNEVGTIELNDAVFGVEINEHLVHLAVVRQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + +K R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYSVKMNRKERLAALKSALTAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L + KTK + L AL++ +D+N L+ARNIP + V Sbjct: 121 NKLIVVDDLKFEAIKTKDMQNVLNNLKAEKALVVTPA-VDQNVVLSARNIPEVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ LVL+K A+ ++E+ + Sbjct: 180 INVYDVMKHKTLVLTKDAVASIEEVY 205 >gi|161511095|ref|NP_772039.2| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110] gi|46577249|sp|Q89J85|RL4_BRAJA RecName: Full=50S ribosomal protein L4 Length = 206 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+AR ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID + KTK L+ F L L+NALIIDG +L+ F AARNIPN+++LP+QGI Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|114567840|ref|YP_754994.1| 50S ribosomal protein L4/L1e [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317285|sp|Q0AUI1|RL4_SYNWW RecName: Full=50S ribosomal protein L4 gi|114338775|gb|ABI69623.1| LSU ribosomal protein L4P [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 207 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 118/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ ++ G G I +++ +F +KP Q ++ ++ Q KR G + SK R+EV Sbjct: 1 MPKVALYDMSGAQVGEIELNDSVFGIKPNQAVMFDFVKMQLANKRAGTASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GG AFGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARVGSSRNPVWTKGGVAFGPRPRDFSYRLPRKVRRLAMKSALSSKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D+L E KT+ +V ++L + ++ D N +ARNIP + L Sbjct: 121 NNIVVLDSLTFDEPKTRLMVQTLKSLPVGKKTLVVTAYGDPNVIKSARNIPGVKPLRADF 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L L++++ A+ +E+ F Sbjct: 181 INVYDLLNYDTLLITREAVARIEEVF 206 >gi|86749416|ref|YP_485912.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris HaA2] gi|109893629|sp|Q2IXQ9|RL4_RHOP2 RecName: Full=50S ribosomal protein L4 gi|86572444|gb|ABD07001.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris HaA2] Length = 206 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 113/206 (54%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+ I+ R + WQ +++ G K+KGR+EV TG Sbjct: 1 MELKVTTLEGQEAGSVQLSDAIFGLEPRNDIVQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QFRGGG+AFGPV LPKKVR+LALRHALS K Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID + KTK LV F L L+NALIIDG +++ F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNTGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+K+A++ALE RFK Sbjct: 181 NVYDIVRRRKLVLTKAALDALEARFK 206 >gi|146340058|ref|YP_001205106.1| 50S ribosomal protein L4 [Bradyrhizobium sp. ORS278] gi|166234639|sp|A4YSJ3|RL4_BRASO RecName: Full=50S ribosomal protein L4 gi|146192864|emb|CAL76869.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS278] Length = 206 Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 112/206 (54%), Positives = 148/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+ I+ R ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V++N + KTK L+ F L L+NALIIDG +L F AARNIPN+++LP+QGI Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|158424177|ref|YP_001525469.1| 50S ribosomal protein L4 [Azorhizobium caulinodans ORS 571] gi|158331066|dbj|BAF88551.1| ribosomal protein L4/L1e [Azorhizobium caulinodans ORS 571] Length = 207 Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 107/207 (51%), Positives = 147/207 (71%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL+V+ LDG + G I +S+ IF L+P+ IL R++ WQ R++ G ++KGRSE+ T Sbjct: 1 MMELTVKTLDGAEAGSIQLSDAIFGLEPRADILHRMVTWQLARRQAGTHRTKGRSEINRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG ARH + S QFRGGG+AFGPV LPKKVR+LAL+HALS K + Sbjct: 61 SKKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D + KTK L RF L +++ L++DG Q+ NF LAARN+ ++++LPVQG Sbjct: 121 EQIIVLDAATLTDAKTKALKERFEKLGIASVLVVDGEQVATNFALAARNLASVDVLPVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILR LVL+++A++ALE RFK Sbjct: 181 INVYDILRRDTLVLTRAAVDALEARFK 207 >gi|15925239|ref|NP_372773.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50] gi|15927829|ref|NP_375362.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315] gi|21283897|ref|NP_646985.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2] gi|49487031|ref|YP_044252.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650833|ref|YP_187048.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL] gi|82751838|ref|YP_417579.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122] gi|87160155|ref|YP_494838.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196161|ref|YP_500978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268689|ref|YP_001247632.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH9] gi|150394754|ref|YP_001317429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH1] gi|151222363|ref|YP_001333185.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980564|ref|YP_001442823.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3] gi|221140149|ref|ZP_03564642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317009|ref|ZP_04840222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729915|ref|ZP_04864080.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734342|ref|ZP_04868507.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] gi|255007029|ref|ZP_05145630.2| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794595|ref|ZP_05643574.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781] gi|258408803|ref|ZP_05681087.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763] gi|258422402|ref|ZP_05685314.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719] gi|258422696|ref|ZP_05685601.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635] gi|258439791|ref|ZP_05690537.1| ribosomal protein L4 [Staphylococcus aureus A9299] gi|258442653|ref|ZP_05691213.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115] gi|258446648|ref|ZP_05694803.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300] gi|258450234|ref|ZP_05698326.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224] gi|258450756|ref|ZP_05698815.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948] gi|258455394|ref|ZP_05703354.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937] gi|262048513|ref|ZP_06021397.1| 50S ribosomal protein L4 [Staphylococcus aureus D30] gi|262052038|ref|ZP_06024249.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3] gi|269203882|ref|YP_003283151.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98] gi|282893687|ref|ZP_06301919.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117] gi|282917594|ref|ZP_06325346.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus D139] gi|282922118|ref|ZP_06329814.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765] gi|283767341|ref|ZP_06340256.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19] gi|284025275|ref|ZP_06379673.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 132] gi|294848782|ref|ZP_06789527.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754] gi|295404925|ref|ZP_06814738.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819] gi|296275960|ref|ZP_06858467.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MR1] gi|297209938|ref|ZP_06926334.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297243983|ref|ZP_06927873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796] gi|300910950|ref|ZP_07128400.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304379433|ref|ZP_07362168.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|46577149|sp|P61058|RL4_STAAM RecName: Full=50S ribosomal protein L4 gi|46577150|sp|P61059|RL4_STAAN RecName: Full=50S ribosomal protein L4 gi|46577151|sp|P61060|RL4_STAAW RecName: Full=50S ribosomal protein L4 gi|56749373|sp|Q6G772|RL4_STAAS RecName: Full=50S ribosomal protein L4 gi|81693960|sp|Q5HDV9|RL4_STAAC RecName: Full=50S ribosomal protein L4 gi|109893640|sp|Q2FEP0|RL4_STAA3 RecName: Full=50S ribosomal protein L4 gi|109893641|sp|Q2YYP7|RL4_STAAB RecName: Full=50S ribosomal protein L4 gi|122538859|sp|Q2FW07|RL4_STAA8 RecName: Full=50S ribosomal protein L4 gi|166199911|sp|A7X5G2|RL4_STAA1 RecName: Full=50S ribosomal protein L4 gi|172049047|sp|A6QJ91|RL4_STAAE RecName: Full=50S ribosomal protein L4 gi|189042887|sp|A6U3X4|RL4_STAA2 RecName: Full=50S ribosomal protein L4 gi|189042888|sp|A5IV33|RL4_STAA9 RecName: Full=50S ribosomal protein L4 gi|13702049|dbj|BAB43341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315] gi|14248022|dbj|BAB58411.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50] gi|21205339|dbj|BAB96033.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2] gi|49245474|emb|CAG43951.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285019|gb|AAW37113.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL] gi|82657369|emb|CAI81810.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122] gi|87126129|gb|ABD20643.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203719|gb|ABD31529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741758|gb|ABQ50056.1| LSU ribosomal protein L4P [Staphylococcus aureus subsp. aureus JH9] gi|149947206|gb|ABR53142.1| ribosomal protein L4/L1e [Staphylococcus aureus subsp. aureus JH1] gi|150375163|dbj|BAF68423.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156722699|dbj|BAF79116.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3] gi|253726362|gb|EES95091.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727659|gb|EES96388.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] gi|257788567|gb|EEV26907.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781] gi|257840486|gb|EEV64946.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763] gi|257841833|gb|EEV66270.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719] gi|257847107|gb|EEV71116.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635] gi|257847567|gb|EEV71569.1| ribosomal protein L4 [Staphylococcus aureus A9299] gi|257851774|gb|EEV75708.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115] gi|257854716|gb|EEV77664.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300] gi|257856326|gb|EEV79235.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224] gi|257861539|gb|EEV84341.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948] gi|257862605|gb|EEV85373.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937] gi|259160093|gb|EEW45126.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3] gi|259163371|gb|EEW47929.1| 50S ribosomal protein L4 [Staphylococcus aureus D30] gi|262076172|gb|ACY12145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98] gi|269941838|emb|CBI50248.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20] gi|282318556|gb|EFB48914.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus D139] gi|282593586|gb|EFB98579.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765] gi|282763745|gb|EFC03873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117] gi|283461220|gb|EFC08304.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19] gi|283471471|emb|CAQ50682.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus ST398] gi|285817911|gb|ADC38398.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981] gi|294824161|gb|EFG40585.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754] gi|294969870|gb|EFG45888.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819] gi|296885611|gb|EFH24548.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178761|gb|EFH38006.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796] gi|298695505|gb|ADI98727.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED133] gi|300887930|gb|EFK83125.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH70] gi|302333885|gb|ADL24078.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JKD6159] gi|302752122|gb|ADL66299.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341965|gb|EFM07869.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830598|emb|CBX35440.1| 50S ribosomal protein L4 (BL4) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129671|gb|EFT85662.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS03] gi|315198221|gb|EFU28552.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS01] gi|320140213|gb|EFW32072.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143483|gb|EFW35264.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440071|gb|EGA97786.1| 50S ribosomal protein L4 [Staphylococcus aureus O11] gi|323442745|gb|EGB00371.1| 50S ribosomal protein L4 [Staphylococcus aureus O46] gi|329314932|gb|AEB89345.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus T0131] gi|329723693|gb|EGG60222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21172] gi|329730071|gb|EGG66461.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21193] gi|329732021|gb|EGG68376.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 21189] Length = 207 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206 >gi|325663061|ref|ZP_08151511.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086668|ref|ZP_08335745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470515|gb|EGC73745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409834|gb|EGG89269.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 206 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + +L + Q KR G K+K RSEV Sbjct: 1 MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLLHMAVVSQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D + E KTK L+++ AL++ ++N +L+ARNIP++ Sbjct: 121 KKFIVLDEINFGEIKTKNFQNVLNNLNVAKALVVL-EDGNKNAELSARNIPSVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+E +E+ + Sbjct: 180 INVYDILKYNTVIATKAAVETIEEVY 205 >gi|319783321|ref|YP_004142797.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +S++IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ID L E KTK L+ F L L+NAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLTNALLIGGAELDKNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62] gi|254039937|gb|ACT56733.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT Sbjct: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS Sbjct: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG Sbjct: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILRCSKLVLSKSAIEALEDRFK Sbjct: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 >gi|255526579|ref|ZP_05393486.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7] gi|296187267|ref|ZP_06855663.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans P7] gi|255509687|gb|EET86020.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7] gi|296048138|gb|EFG87576.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans P7] Length = 206 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + +S+++F ++ Q L +V+ KR G +K RSEV+ Sbjct: 1 MPTVGLFNKEGKKVGDVQLSDNVFGVEVNQYALHQVVVALLANKRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGMVFAVKPRDYRTSVPKSMRRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+++L + KTK +V AL+ LI+ + + N +ARNI + +LPV Sbjct: 121 EQIVVLESLELEAPKTKEVVKMLDALNAKKTLIVT-SESNENAYKSARNIQGVEILPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ KLV++K A+ +E+ + Sbjct: 180 LNVYDLLKYEKLVITKDAVSKIEEVY 205 >gi|148256391|ref|YP_001240976.1| 50S ribosomal protein L4 [Bradyrhizobium sp. BTAi1] gi|166234638|sp|A5ELM6|RL4_BRASB RecName: Full=50S ribosomal protein L4 gi|146408564|gb|ABQ37070.1| LSU ribosomal protein L4P [Bradyrhizobium sp. BTAi1] Length = 206 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 113/206 (54%), Positives = 148/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G+D G + +S+ IF L+P+ I+ R ++WQ +++ G K+KGR+E+ TG Sbjct: 1 MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V++N + KTK L+ F L L+NALIIDG +L F AARNIPN+++LP+QGI Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206 >gi|49484465|ref|YP_041689.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MRSA252] gi|257423734|ref|ZP_05600163.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257426412|ref|ZP_05602814.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257429051|ref|ZP_05605438.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 68-397] gi|257434658|ref|ZP_05610709.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M876] gi|282902152|ref|ZP_06310045.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus C160] gi|282906592|ref|ZP_06314440.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909562|ref|ZP_06317373.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911809|ref|ZP_06319605.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282915098|ref|ZP_06322875.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899] gi|282920824|ref|ZP_06328542.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C427] gi|282925729|ref|ZP_06333377.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C101] gi|283959027|ref|ZP_06376468.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497502|ref|ZP_06665356.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus 58-424] gi|293511077|ref|ZP_06669774.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M809] gi|293549683|ref|ZP_06672355.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015] gi|295428832|ref|ZP_06821456.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589682|ref|ZP_06948323.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MN8] gi|56749402|sp|Q6GEI4|RL4_STAAR RecName: Full=50S ribosomal protein L4 gi|49242594|emb|CAG41315.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MRSA252] gi|257272752|gb|EEV04854.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257276043|gb|EEV07494.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279532|gb|EEV10119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 68-397] gi|257285254|gb|EEV15370.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M876] gi|282312558|gb|EFB42962.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C101] gi|282315239|gb|EFB45623.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus C427] gi|282320819|gb|EFB51153.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899] gi|282323505|gb|EFB53821.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282326541|gb|EFB56843.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329491|gb|EFB59012.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282596611|gb|EFC01570.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus C160] gi|283788619|gb|EFC27446.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290918730|gb|EFD95806.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015] gi|291096433|gb|EFE26691.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus 58-424] gi|291466064|gb|EFF08593.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus M809] gi|295127181|gb|EFG56823.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578193|gb|EFH96906.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus MN8] gi|312437340|gb|ADQ76411.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus subsp. aureus TCH60] gi|315193501|gb|EFU23897.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CGS00] Length = 207 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206 >gi|241889133|ref|ZP_04776437.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379] gi|241864382|gb|EER68760.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379] Length = 207 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + +E +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ +++L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DILR +K+V +K A+E + + Sbjct: 181 LNVLDILRSNKVVFTKDAVEKVGEVL 206 >gi|239832121|ref|ZP_04680450.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301] gi|239824388|gb|EEQ95956.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301] Length = 206 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L + E KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|283796558|ref|ZP_06345711.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1] gi|291075972|gb|EFE13336.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1] gi|295092548|emb|CBK78655.1| LSU ribosomal protein L4P [Clostridium cf. saccharolyticum K10] Length = 204 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + LAL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYTIRLNKKEKRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK + L + AL++ D N L+ARNIP + V Sbjct: 121 NKFIVVDELSFAEIKTKKFAEVLKNLKVEKALVVGA---DANAALSARNIPAVKTASVNT 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 178 INVYDILKYNTVVATKAAVASIEEVY 203 >gi|295694838|ref|YP_003588076.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912] gi|295410440|gb|ADG04932.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912] Length = 207 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N GE G + +SE +F + + +L + + Q R G +K R+ V Sbjct: 1 MPKVAVYNAAGEQVGELELSEKVFGVDVKPAVLHQAVVAQLANARQGTRATKNRALVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P LPKK+R LA+R ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWVGGGTVFGPQPRDFSMRLPKKLRRLAIRGALSSKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L + KTK ++ L + ++ G L++ L+ARNIP + LP Sbjct: 121 GSLIVLDSLQIEAPKTKEMIRILSNLKVPGKALVVGEGLNQPAHLSARNIPGVKYLPATD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L LV++ +A++ +E+ F Sbjct: 181 INVVDLLHHDHLVVTTAAVKRIEEVF 206 >gi|116251541|ref|YP_767379.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841] gi|166199852|sp|Q1MIE0|RL4_RHIL3 RecName: Full=50S ribosomal protein L4 gi|115256189|emb|CAK07270.1| putative 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841] Length = 206 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 126/206 (61%), Positives = 162/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|255282606|ref|ZP_05347161.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens DSM 14469] gi|255266899|gb|EET60104.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens DSM 14469] Length = 206 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTMELSDAVFGVEINEHLVHMAVLSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK +V + ++ AL++ + D N ++ARNI + Sbjct: 121 NKLVVLDELKLDAIKTKSMVNVLKNVNAEKALVVL-NENDENVVMSARNIAGVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV++K+A EA+E+ + Sbjct: 180 INVYDILKYNTLVMTKAAAEAIEEVY 205 >gi|291518044|emb|CBK73265.1| LSU ribosomal protein L4P [Butyrivibrio fibrisolvens 16/4] Length = 206 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ G + +++ IFA++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVFNMEGKEVGSMDLNDSIFAVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSVVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK L++ AL++ D+N ++A+NIP + Sbjct: 121 NKFIVVDELKLDSIKTKDFAKVLTNLNVEKALVVLDTN-DQNVVMSAKNIPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V++K+A++ +++ + Sbjct: 180 INVYDILKYNTVVVTKAAVDQIQEVY 205 >gi|226323011|ref|ZP_03798529.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758] gi|225208578|gb|EEG90932.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758] Length = 206 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKERRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D + E KTK L +S AL++ ++N +L+ARNI ++ Sbjct: 121 KKFIVVDEINFDEIKTKKFQDVLNNLSVSKALVVL-EDGNKNAELSARNIADVKTAKTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A++A+E+ + Sbjct: 180 INVYDILKYNTVIATKAAVQAIEEVY 205 >gi|188581376|ref|YP_001924821.1| 50S ribosomal protein L4 [Methylobacterium populi BJ001] gi|226730691|sp|B1ZLK5|RL4_METPB RecName: Full=50S ribosomal protein L4 gi|179344874|gb|ACB80286.1| ribosomal protein L4/L1e [Methylobacterium populi BJ001] Length = 206 Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E IF L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSLELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSSKAKTS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|291533620|emb|CBL06733.1| LSU ribosomal protein L4P [Megamonas hypermegale ART12/1] Length = 207 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V + G+ G I ++E +F ++ +G++ + + Q +R+G +K R V Sbjct: 1 MPKVAVYTVAGQQIGDIELNESVFGVEVNEGLVHQAVVMQLAAQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LA++ AL+DK + Sbjct: 61 GRKPWKQKGTGRARSGSTRSPLWVGGGTVFGPSPRSYAFRMPRKQRRLAIKCALTDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK +V +++ +I + N + ++RNIP + + G Sbjct: 121 GDFIVLESLDFAAPKTKEVVKMMSDFNVAEKALIVTADVVENVEKSSRNIPGVKAISSCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +KL ++K AI +E+ Sbjct: 181 LNVYDILNHNKLFITKDAITRIEEVL 206 >gi|158319544|ref|YP_001512051.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs] gi|166990945|sp|A8MLE1|RL4_ALKOO RecName: Full=50S ribosomal protein L4 gi|158139743|gb|ABW18055.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs] Length = 207 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ I +SE++F ++ + + V++ Q +R G +K R+EV Sbjct: 1 MPKVAIYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKKVR LAL+ AL+ K S Sbjct: 61 GRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK +V + L++ +I + +A NI + V Sbjct: 121 NELIVLDELKLDAPKTKEMVNILKNLNVDKKALIVMGEKSEAVIKSANNIQGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ KL+++K A++ +E+ + Sbjct: 181 INVYDILKYDKLIITKDAVQKVEEVY 206 >gi|329768274|ref|ZP_08259775.1| 50S ribosomal protein L4 [Gemella haemolysans M341] gi|328837473|gb|EGF87102.1| 50S ribosomal protein L4 [Gemella haemolysans M341] Length = 207 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + SE +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEASEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ +++L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DIL +K+V +K A+E + + Sbjct: 181 LNVLDILGSNKVVFTKDAVEKVGEVL 206 >gi|225571553|ref|ZP_03780549.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM 15053] gi|225159630|gb|EEG72249.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM 15053] Length = 206 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTTKVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D + E KTK + LD+S AL++ + N +L+ARNI ++ Sbjct: 121 KKFIVVDEIAFDEIKTKNFANVLKNLDVSKALVVL-EDGNTNAELSARNIADVKTAKTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 180 INVYDILKYNTVIATKAAVANIEEVY 205 >gi|302669962|ref|YP_003829922.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316] gi|302394435|gb|ADL33340.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316] Length = 207 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGKIDLSDAIFGVEVNEHLVHMAVLQQLADNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP + KK + AL+ AL+DK + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTDKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L E KTK L+ + ++ D+N L+ARN+ N Sbjct: 121 NNIVVVDELKFDEIKTKRFAEVMNNLNATRKALVVLADNDQNVVLSARNLAEANTTLTNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+ LVL+K A+ +E+ + Sbjct: 181 LNVYDIVNARTLVLTKDAVAKIEEVY 206 >gi|188584837|ref|YP_001916382.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF] gi|226730697|sp|B2A4E0|RL4_NATTJ RecName: Full=50S ribosomal protein L4 gi|179349524|gb|ACB83794.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF] Length = 207 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N +G G I++ + IFA + ++ + KR G + +K RSEV Sbjct: 1 MPKVALYNNEGSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG +F P P + +PKK + A++ AL+ K + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I++++ L + KTK ++ L +++ +I D N + RNIP ++ Sbjct: 121 GEIVILEELTMEAPKTKKIIEMLENLSINHKAMIVTGASDLNVYRSTRNIPGVSSALANN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L LVL+K A+ +E+ F Sbjct: 181 LNVYDVLNHDYLVLTKDAVSVIEEVF 206 >gi|317496189|ref|ZP_07954549.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424] gi|316913764|gb|EFV35250.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424] Length = 207 Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + ++ +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ ++ L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALETLTFDSIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DIL +K+V +K A+E + + Sbjct: 181 LNVLDILGSNKVVFTKDALEKVGEVL 206 >gi|23502109|ref|NP_698236.1| 50S ribosomal protein L4 [Brucella suis 1330] gi|62290143|ref|YP_221936.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941] gi|82700066|ref|YP_414640.1| 50S ribosomal protein L4 [Brucella melitensis biovar Abortus 2308] gi|148559402|ref|YP_001259152.1| 50S ribosomal protein L4 [Brucella ovis ATCC 25840] gi|161619188|ref|YP_001593075.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365] gi|163843498|ref|YP_001627902.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445] gi|189024381|ref|YP_001935149.1| Ribosomal protein L4/L1e [Brucella abortus S19] gi|225627702|ref|ZP_03785739.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo] gi|225852729|ref|YP_002732962.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457] gi|237815651|ref|ZP_04594648.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A] gi|254689452|ref|ZP_05152706.1| 50S ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|254693937|ref|ZP_05155765.1| 50S ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|254697587|ref|ZP_05159415.1| 50S ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|254701973|ref|ZP_05163801.1| 50S ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|254704517|ref|ZP_05166345.1| 50S ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|254706587|ref|ZP_05168415.1| 50S ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|254710303|ref|ZP_05172114.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|254714300|ref|ZP_05176111.1| 50S ribosomal protein L4 [Brucella ceti M644/93/1] gi|254717737|ref|ZP_05179548.1| 50S ribosomal protein L4 [Brucella ceti M13/05/1] gi|254730481|ref|ZP_05189059.1| 50S ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|256031797|ref|ZP_05445411.1| 50S ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|256044882|ref|ZP_05447786.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|256061312|ref|ZP_05451462.1| 50S ribosomal protein L4 [Brucella neotomae 5K33] gi|256113786|ref|ZP_05454590.1| 50S ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|256257698|ref|ZP_05463234.1| 50S ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|256263781|ref|ZP_05466313.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9] gi|260168931|ref|ZP_05755742.1| 50S ribosomal protein L4 [Brucella sp. F5/99] gi|260546691|ref|ZP_05822430.1| ribosomal protein L4 [Brucella abortus NCTC 8038] gi|260565516|ref|ZP_05836000.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M] gi|260566239|ref|ZP_05836709.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40] gi|260754975|ref|ZP_05867323.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|260758191|ref|ZP_05870539.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|260762017|ref|ZP_05874360.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|260883984|ref|ZP_05895598.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|261214229|ref|ZP_05928510.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|261219580|ref|ZP_05933861.1| ribosomal protein L4 [Brucella ceti M13/05/1] gi|261314047|ref|ZP_05953244.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|261317866|ref|ZP_05957063.1| ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|261322075|ref|ZP_05961272.1| ribosomal protein L4 [Brucella ceti M644/93/1] gi|261325319|ref|ZP_05964516.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|261752541|ref|ZP_05996250.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|261755200|ref|ZP_05998909.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|261758424|ref|ZP_06002133.1| ribosomal protein L4 [Brucella sp. F5/99] gi|265988895|ref|ZP_06101452.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|265991309|ref|ZP_06103866.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|265995146|ref|ZP_06107703.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|297248538|ref|ZP_06932256.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196] gi|306840302|ref|ZP_07473074.1| 50S ribosomal protein L4 [Brucella sp. BO2] gi|306844136|ref|ZP_07476730.1| 50S ribosomal protein L4 [Brucella sp. BO1] gi|46577272|sp|Q8G077|RL4_BRUSU RecName: Full=50S ribosomal protein L4 gi|51338733|sp|Q8YHN9|RL4_BRUME RecName: Full=50S ribosomal protein L4 gi|75496682|sp|Q57CQ9|RL4_BRUAB RecName: Full=50S ribosomal protein L4 gi|109893579|sp|Q2YM04|RL4_BRUA2 RecName: Full=50S ribosomal protein L4 gi|166234640|sp|A5VR05|RL4_BRUO2 RecName: Full=50S ribosomal protein L4 gi|189029492|sp|A9M5P9|RL4_BRUC2 RecName: Full=50S ribosomal protein L4 gi|189029493|sp|B0CH31|RL4_BRUSI RecName: Full=50S ribosomal protein L4 gi|226730626|sp|B2S678|RL4_BRUA1 RecName: Full=50S ribosomal protein L4 gi|254803720|sp|C0RJK0|RL4_BRUMB RecName: Full=50S ribosomal protein L4 gi|23348069|gb|AAN30151.1| ribosomal protein L4 [Brucella suis 1330] gi|62196275|gb|AAX74575.1| RplD, ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941] gi|82616167|emb|CAJ11210.1| Ribosomal protein L4/L1e [Brucella melitensis biovar Abortus 2308] gi|82798166|gb|ABB91835.1| ribosomal protein L4 [Brucella abortus] gi|82798168|gb|ABB91836.1| ribosomal protein L4 [Brucella abortus] gi|82798170|gb|ABB91837.1| ribosomal protein L4 [Brucella abortus] gi|82798172|gb|ABB91838.1| ribosomal protein L4 [Brucella abortus] gi|82798174|gb|ABB91839.1| ribosomal protein L4 [Brucella abortus] gi|82798176|gb|ABB91840.1| ribosomal protein L4 [Brucella abortus] gi|82798178|gb|ABB91841.1| ribosomal protein L4 [Brucella abortus] gi|82798180|gb|ABB91842.1| ribosomal protein L4 [Brucella canis] gi|82798182|gb|ABB91843.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798184|gb|ABB91844.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798186|gb|ABB91845.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis] gi|82798188|gb|ABB91846.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|82798190|gb|ABB91847.1| ribosomal protein L4 [Brucella ovis] gi|82798192|gb|ABB91848.1| ribosomal protein L4 [Brucella suis 1330] gi|82798194|gb|ABB91849.1| ribosomal protein L4 [Brucella suis ATCC 23445] gi|82798196|gb|ABB91850.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|82798198|gb|ABB91851.1| ribosomal protein L4 [Brucella suis bv. 4 str. 40] gi|82798200|gb|ABB91852.1| ribosomal protein L4 [Brucella suis] gi|82798202|gb|ABB91853.1| ribosomal protein L4 [Brucella pinnipedialis] gi|82798204|gb|ABB91854.1| ribosomal protein L4 [Brucella ceti] gi|148370659|gb|ABQ60638.1| ribosomal protein L4 [Brucella ovis ATCC 25840] gi|161335999|gb|ABX62304.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365] gi|163674221|gb|ABY38332.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445] gi|189019953|gb|ACD72675.1| Ribosomal protein L4/L1e [Brucella abortus S19] gi|225617707|gb|EEH14752.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo] gi|225641094|gb|ACO01008.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457] gi|237788949|gb|EEP63160.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A] gi|260095741|gb|EEW79618.1| ribosomal protein L4 [Brucella abortus NCTC 8038] gi|260151584|gb|EEW86678.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M] gi|260155757|gb|EEW90837.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40] gi|260668509|gb|EEX55449.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292] gi|260672449|gb|EEX59270.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59] gi|260675083|gb|EEX61904.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870] gi|260873512|gb|EEX80581.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68] gi|260915836|gb|EEX82697.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya] gi|260924669|gb|EEX91237.1| ribosomal protein L4 [Brucella ceti M13/05/1] gi|261294765|gb|EEX98261.1| ribosomal protein L4 [Brucella ceti M644/93/1] gi|261297089|gb|EEY00586.1| ribosomal protein L4 [Brucella pinnipedialis B2/94] gi|261301299|gb|EEY04796.1| ribosomal protein L4 [Brucella neotomae 5K33] gi|261303073|gb|EEY06570.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10] gi|261738408|gb|EEY26404.1| ribosomal protein L4 [Brucella sp. F5/99] gi|261742294|gb|EEY30220.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513] gi|261744953|gb|EEY32879.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686] gi|262766259|gb|EEZ12048.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether] gi|263002093|gb|EEZ14668.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1] gi|263093909|gb|EEZ17843.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9] gi|264661092|gb|EEZ31353.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1] gi|297175707|gb|EFH35054.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196] gi|306275579|gb|EFM57311.1| 50S ribosomal protein L4 [Brucella sp. BO1] gi|306289701|gb|EFM60890.1| 50S ribosomal protein L4 [Brucella sp. BO2] gi|326409254|gb|ADZ66319.1| Ribosomal protein L4/L1e [Brucella melitensis M28] gi|326538962|gb|ADZ87177.1| 50S ribosomal protein L4 [Brucella melitensis M5-90] Length = 206 Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|27353674|dbj|BAC50664.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110] Length = 220 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 115/206 (55%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V L+G++ G + +S+ IF L+P+Q I+AR ++WQ +++ G K+KGR+E+ TG Sbjct: 15 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 74 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S V QFRGGG+AFGPV LPKKVR+LAL+HALS K Sbjct: 75 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 134 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID + KTK L+ F L L+NALIIDG +L+ F AARNIPN+++LP+QGI Sbjct: 135 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 194 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+AI+ALE RFK Sbjct: 195 NVYDILRRQKLVLTKAAIDALEARFK 220 >gi|323141357|ref|ZP_08076248.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067] gi|322414106|gb|EFY04934.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067] Length = 211 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LSV +L G G I +++ +F + + ++ + + Q +R G S +K R+ V Sbjct: 4 MPKLSVYDLSGAQTGEIELNDSVFGAEFNEAVVHQAVVMQLANQRQGTSATKTRAMVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL ALS K + Sbjct: 64 GRKPWKQKGTGRARCGSNRSPVWVGGGTTFGPQPRSYAKKMPRKARRLALCCALSAKVAA 123 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V++ L KTK + + +A + + AL+I + N L+ARN+P + + Sbjct: 124 GELVVVEGLAFDAPKTKQVASLLKAFEAVDTKALLITDG-SNENVALSARNMPKVTTITN 182 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+N +DIL K+ L+K A+E +E+ Sbjct: 183 MGLNCFDILNSKKVFLAKDAVEKIEEVL 210 >gi|153009287|ref|YP_001370502.1| 50S ribosomal protein L4 [Ochrobactrum anthropi ATCC 49188] gi|166234695|sp|A6X0B9|RL4_OCHA4 RecName: Full=50S ribosomal protein L4 gi|151561175|gb|ABS14673.1| ribosomal protein L4/L1e [Ochrobactrum anthropi ATCC 49188] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L + E KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALVIGGAEIDVNFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|23097575|ref|NP_691041.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831] gi|46577267|sp|Q8ETY1|RL4_OCEIH RecName: Full=50S ribosomal protein L4 gi|22775798|dbj|BAC12076.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831] Length = 207 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ +F ++P +L + Q R G K RSEV Sbjct: 1 MPKVALLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N+ KTK +V + L + +I + D +A N+ N+ +L V+ Sbjct: 121 ESLLVLENISIDAPKTKEIVNILKGLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ D+L KL+++K A E + Sbjct: 181 LNILDLLMHDKLIITKDAAEKAGEVL 206 >gi|260664854|ref|ZP_05865705.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US] gi|297205088|ref|ZP_06922484.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii JV-V16] gi|260561337|gb|EEX27310.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US] gi|297149666|gb|EFH29963.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii JV-V16] Length = 205 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204 >gi|209548936|ref|YP_002280853.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226730713|sp|B5ZYT6|RL4_RHILW RecName: Full=50S ribosomal protein L4 gi|209534692|gb|ACI54627.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 161/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+EV+ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|163760800|ref|ZP_02167879.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43] gi|162281844|gb|EDQ32136.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 116/206 (56%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V L+G+ G IS+S+ IF L+P+Q ++ R++RWQ +K+ G K+ GRSE++ TG Sbjct: 1 MDLTVTTLEGKSAGKISLSDAIFGLEPRQDLIQRIVRWQLAKKQQGGHKTLGRSEISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARH + S QFRGGG+A GPV H LPKKVR+LALRHALS K ++ Sbjct: 61 AKMFKQKGTGRARHHAASAPQFRGGGRAHGPVVRSHAHDLPKKVRALALRHALSAKAQAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 DI+++D+L + E KTK L + L+NAL I G +LD+NF+LAA+NIPN+++LPVQGI Sbjct: 121 DIIIVDSLTAGEAKTKALTGSLDKMGLNNALFIGGAELDQNFRLAAKNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+ ALE+RFK Sbjct: 181 NVYDILRRGKLVLSKDAVAALEERFK 206 >gi|168187813|ref|ZP_02622448.1| ribosomal protein L4/L1 family [Clostridium botulinum C str. Eklund] gi|169294356|gb|EDS76489.1| ribosomal protein L4/L1 family [Clostridium botulinum C str. Eklund] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + +++ +FA++ + +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLADTVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++L KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 KELVVLESLELDAPKTKEMVKMINAFESKKPLIVV-PESNEVIYKSVRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205 >gi|182418832|ref|ZP_02950097.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521] gi|237666492|ref|ZP_04526477.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377329|gb|EDT74890.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521] gi|237657691|gb|EEP55246.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G+ + ++E +FA + Q L +V+ KR G +K RSEV Sbjct: 1 MPTVGVYNIEGKKVSDMELNESVFATEVNQYALHQVVVALLANKRQGTQSTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P + PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSTPKSMRKVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+++L KTK +V AL+ ALII + + +ARNI ++++P Sbjct: 121 NSMIVLESLNFDAPKTKNVVAMLNALEAPKALIIT-AESNEAVYKSARNIQGVSVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDLLKFDKVIMTKDAVSKIEEVY 205 >gi|323483300|ref|ZP_08088690.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum WAL-14163] gi|323691202|ref|ZP_08105478.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum WAL-14673] gi|323403398|gb|EGA95706.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum WAL-14163] gi|323504721|gb|EGB20507.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum WAL-14673] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTLELNDSVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK + L ++ AL++ N L+ARNIP + V Sbjct: 121 NKFIVVDAMNFDEIKTKKFQSVMNNLKVNKALVVLD-DTCGNTVLSARNIPTVKTASVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205 >gi|46205275|ref|ZP_00048760.2| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum MS-1] Length = 206 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E IF L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSVELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSTKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|75675557|ref|YP_317978.1| 50S ribosomal protein L4 [Nitrobacter winogradskyi Nb-255] gi|109893613|sp|Q3SSW5|RL4_NITWN RecName: Full=50S ribosomal protein L4 gi|74420427|gb|ABA04626.1| LSU ribosomal protein L4P [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 111/206 (53%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G+ G + +S+ IF L+P++ ++ R + WQ + + G K+KGR+E+ TG Sbjct: 1 MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG ARH S QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID++ KE KTK L+ F +L L++ALIIDG Q+ F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLTSALIIDGAQVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|329770039|ref|ZP_08261434.1| 50S ribosomal protein L4 [Gemella sanguinis M325] gi|328837350|gb|EGF86980.1| 50S ribosomal protein L4 [Gemella sanguinis M325] Length = 207 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + DG G + ++ +F ++P Q +L + + Q R G K+KGRSEV+ Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K + Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ ++ L KTK L L ++ +L+ N L+ RNIP + + G Sbjct: 121 NEVFALETLAFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DIL +K+V +K A+E + + Sbjct: 181 LNVLDILGSNKVVFTKDALEKVGEVL 206 >gi|241204166|ref|YP_002975262.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858056|gb|ACS55723.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 206 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 162/206 (78%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ +K+ G K+KGR+E++ TG Sbjct: 1 MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VIDNLV+ E KTK L + F L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVLSK+A+EALE+RFK Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206 >gi|256852037|ref|ZP_05557424.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN] gi|260661394|ref|ZP_05862307.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN] gi|256615449|gb|EEU20639.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN] gi|260547849|gb|EEX23826.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN] Length = 205 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++++D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204 >gi|254719290|ref|ZP_05181101.1| 50S ribosomal protein L4 [Brucella sp. 83/13] gi|265984290|ref|ZP_06097025.1| ribosomal protein L4 [Brucella sp. 83/13] gi|306838042|ref|ZP_07470900.1| 50S ribosomal protein L4 [Brucella sp. NF 2653] gi|264662882|gb|EEZ33143.1| ribosomal protein L4 [Brucella sp. 83/13] gi|306406966|gb|EFM63187.1| 50S ribosomal protein L4 [Brucella sp. NF 2653] Length = 206 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ ++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLAHRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|325288579|ref|YP_004264760.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271] gi|324963980|gb|ADY54759.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271] Length = 209 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G I ++E IF + P G++ V+ Q R+G + GRSEV Sbjct: 1 MPKVQVVNMQGSPVGEIELNERIFGVTPNIGVMHSVVVAQMANARVGTHSTLGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGGG FGP P +PKKV+ LAL ALS K Sbjct: 61 GRKPWRQKGTGRARAGTIRSPLWRGGGIVFGPKPRDYSKKVPKKVKRLALCSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D+L KTK +V A+ + ++ D+N QL+ARNI + + Sbjct: 121 SNLIVVDDLKFDAPKTKDMVKFLEAIKVDRKALVVTEGSDKNVQLSARNIQGVKTASAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D+L+ LV+SK A+ E+ + Sbjct: 181 INVVDLLKHDVLVISKQAVIKAEEVY 206 >gi|222150446|ref|YP_002559599.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402] gi|254803742|sp|B9E9J2|RL4_MACCJ RecName: Full=50S ribosomal protein L4 gi|222119568|dbj|BAH16903.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G I +++++F ++P Q +L + Q R G K RS V+ Sbjct: 1 MANYDVLKVDGTKAGSIELNDNVFGIEPNQHVLFEAINLQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSAKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+++L KTK L+L ++ D N L+ARNIP + ++ G Sbjct: 121 NAFTVLESLTFDAPKTKEFKNMTTTLELPKKVLFVVEAEDVNVALSARNIPGVTVITTTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI+ +++V++K A+E +E+ Sbjct: 181 LNVLDIVHANQVVMTKGAVEKVEEVL 206 >gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37] gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37] Length = 205 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLDG G + + E +F L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVINLDGGSAGEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR+L L+ ALSDK + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSDKARNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID++ KTK L + L ALIIDG +++ NF AARNI +++LP G Sbjct: 121 ALIVIDSID-GASKTKALAAQVSKLGWKRALIIDGAEVNENFAKAARNIEGLDVLPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|210611126|ref|ZP_03288740.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787] gi|210152113|gb|EEA83120.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787] Length = 206 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTTRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK L++S AL++ + N L+ARNI N+ Sbjct: 121 NKFIVLDEMNFGEIKTKNFQNMLNNLEVSKALVVL-EDGNTNAALSARNIANVKTAWTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++++K+ + +E+ + Sbjct: 180 INVYDILKYNTVIVTKAVVATIEEVY 205 >gi|313891529|ref|ZP_07825139.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E] gi|313119988|gb|EFR43170.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E] Length = 207 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 121/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +++ IF ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + KK R LA++ ALS+K + Sbjct: 61 GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++VID + + KTK +V +A + S ALIIDG + N L+ARNIP + + G Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN+YD++ +KL +++ A++ +E+ Sbjct: 181 INIYDLVHYTKLFITQEAVKQIEEVL 206 >gi|150392159|ref|YP_001322208.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF] gi|166990944|sp|A6TWI1|RL4_ALKMQ RecName: Full=50S ribosomal protein L4 gi|149952021|gb|ABR50549.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF] Length = 207 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G+ + +SE+IF ++ + +L ++ Q KR G +K R+EV Sbjct: 1 MPKVAVYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG F P P + LP+KV+ LAL+ AL+ K + Sbjct: 61 GRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK +V + L+ +++ + + +A NIP + V Sbjct: 121 EELLVLDELSLDTPKTKDMVNILKNLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL K +++K A+E +E+ + Sbjct: 181 INVYDILNHDKFIITKDAVEKVEEVY 206 >gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] gi|238832313|gb|EEQ24622.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 269-3] Length = 205 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK L++ + +++ + N QL+ARN+ N+ ++PV G Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204 >gi|224477219|ref|YP_002634825.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus TM300] gi|254803753|sp|B9DM18|RL4_STACT RecName: Full=50S ribosomal protein L4 gi|222421826|emb|CAL28640.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 207 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P + ++ + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDSVFAIEPNKDVIFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D + KTK L+L +++ D N +L+ARNIP + + V G Sbjct: 121 NGFTVVDAFGLEAPKTKEFTKVLSNLELPKKVLVVTESEDVNVELSARNIPGVQITTVTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDITSADSVLITEAAAKKVEEVL 206 >gi|257431697|ref|ZP_05608060.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus E1410] gi|257282576|gb|EEV12708.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus E1410] Length = 207 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q R G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTLVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206 >gi|160941068|ref|ZP_02088406.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC BAA-613] gi|158436017|gb|EDP13784.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC BAA-613] Length = 206 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGALELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + ALR AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALRSALTSRVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ D+N L+ARNI + V Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVMDNLKVSKALVVL-ADNDQNTVLSARNIAGVKTSQVGS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205 >gi|85715130|ref|ZP_01046114.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A] gi|85698045|gb|EAQ35918.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A] Length = 206 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ L+G+ G + +S+ IF L+P++ ++ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELNITTLEGKAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTRKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG ARH S QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID++ KE KTK L+ F L L++ALI+DG Q+ F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSGLGLTSALIVDGAQVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206 >gi|329121829|ref|ZP_08250444.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965] gi|327467767|gb|EGF13259.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965] Length = 207 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 121/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +++ IF ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + KK R LA++ ALS+K + Sbjct: 61 GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++VID + + KTK +V +A + S ALIIDG + N L+ARNIP + + G Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN+YD++ +KL +++ A++ +E+ Sbjct: 181 INIYDLVHYTKLFMTQEAVKQIEEVL 206 >gi|253681900|ref|ZP_04862697.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873] gi|253561612|gb|EES91064.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873] Length = 206 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + ++E +FA++ +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK ++ +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMAIPKSMKRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++NL + KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVV-AESNEVVYKSIRNIEGATVVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205 >gi|170748637|ref|YP_001754897.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831] gi|226730692|sp|B1LWS7|RL4_METRJ RecName: Full=50S ribosomal protein L4 gi|170655159|gb|ACB24214.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831] Length = 206 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 108/206 (52%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG G + ++E+IF L+P+ +L R++RWQ ++R G + RS+V T Sbjct: 1 MKLDIKTLDGAGAGSVELNEEIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LALRHALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSSKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ ++ KTK L+ RF + LSNALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKIEDHKTKGLIERFGKMGLSNALIIGGAEVDVNFGRAARAIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTKAAVDALEERFK 206 >gi|294852569|ref|ZP_06793242.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026] gi|294821158|gb|EFG38157.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026] Length = 206 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 157/206 (76%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDMLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|331268414|ref|YP_004394906.1| 50S ribosomal protein L4/L1e [Clostridium botulinum BKT015925] gi|329124964|gb|AEB74909.1| ribosomal protein L4/L1e [Clostridium botulinum BKT015925] Length = 206 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G + ++E +FA++ +L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P A+PK +R +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPREYRMAIPKSMRRVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++NL + KTK +V A + LI+ + + + RNI ++PV Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVV-AESNEVVYKSIRNIEGATIVPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K +++K A+ +E+ + Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205 >gi|291562767|emb|CBL41583.1| LSU ribosomal protein L4P [butyrate-producing bacterium SS3/4] Length = 206 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTIELNDAVFGVEVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGMVFAPTPRDYTITLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ D+N L+ARNIP + V Sbjct: 121 NKFVVVDELKFDEVKTKNFKAVMNNLKVSKALVVL-ADNDQNTVLSARNIPEVKTSLVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVFDILKYNTVVATKAAVASIEEVY 205 >gi|282926795|ref|ZP_06334422.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102] gi|282591246|gb|EFB96319.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102] Length = 207 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V LDG G I +S+ +F ++P +L + Q G K RS V+ Sbjct: 1 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLCQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI LV++++A + +E+ Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206 >gi|110800870|ref|YP_697093.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124] gi|168211904|ref|ZP_02637529.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626] gi|168215177|ref|ZP_02640802.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969] gi|168216632|ref|ZP_02642257.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239] gi|169347046|ref|ZP_02865988.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495] gi|182626931|ref|ZP_02954664.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721] gi|123148513|sp|Q0TMP7|RL4_CLOP1 RecName: Full=50S ribosomal protein L4 gi|110675517|gb|ABG84504.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124] gi|169296729|gb|EDS78858.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495] gi|170710168|gb|EDT22350.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626] gi|170713383|gb|EDT25565.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969] gi|177907721|gb|EDT70336.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721] gi|182381262|gb|EDT78741.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239] Length = 204 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIEGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|118591183|ref|ZP_01548582.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614] gi|118436259|gb|EAV42901.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614] Length = 206 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L+P+ ++ RV+RWQ +++ G K+ GRSEV+ T Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKALGRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH +K QFRGGGKAFGP+ H LPKKVR+L L+HALS K ++ Sbjct: 61 KKFVRQKGSGGARHGNKKAPQFRGGGKAFGPIVRDHSHDLPKKVRALGLKHALSAKAMTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+++ + E KTK L + L L++ALIIDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SIVVVEDAKAAEAKTKALKAQLSKLGLTSALIIDGAEVDANFALASRNIPHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ ALE+R K Sbjct: 181 NVYDILRANTLVLTKAAVSALEERLK 206 >gi|254502843|ref|ZP_05114994.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11] gi|222438914|gb|EEE45593.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11] Length = 206 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 149/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L P+ ++ RV+RWQ +++ G K+ GRSEV + Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLDPRTDLIHRVVRWQLAKRQAGTHKTLGRSEVTGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH +K QFRGGG+AFGPV H LPKKVR L L+HALS K ++ Sbjct: 61 KKFVRQKGSGGARHGNKKAPQFRGGGRAFGPVVRDHGHDLPKKVRVLGLKHALSAKAKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+++ + E KTK L ++ L L++AL+IDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SIVVVEDAKAAEAKTKALKSQLNKLGLTSALVIDGAEVDNNFALASRNIPHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR + LVL+K+A+ ALE+RFK Sbjct: 181 NVYDILRANTLVLTKAAVSALEERFK 206 >gi|291521897|emb|CBK80190.1| LSU ribosomal protein L4P [Coprococcus catus GD/7] Length = 206 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LSV N++G G I +++ +F ++ + ++ + + Q R G +K RSEV+ Sbjct: 1 MAKLSVYNIEGNQVGEIELNDAVFGVEVNENLMHKAVVAQLAASRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LA++ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSIKLNKKERRLAIKSALTTKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D+ E KTK V L AL++ + + N +A N+P + Sbjct: 121 SKLIVLDSFELDEIKTKKFVAVMNNLKAEKALVVL-NEKNDNVIKSANNVPTVKTALTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ LVL++ A+ +++ + Sbjct: 180 INVYDILKYDTLVLTQDAVATIQEVY 205 >gi|92117099|ref|YP_576828.1| 50S ribosomal protein L4 [Nitrobacter hamburgensis X14] gi|122418094|sp|Q1QN29|RL4_NITHX RecName: Full=50S ribosomal protein L4 gi|91799993|gb|ABE62368.1| LSU ribosomal protein L4P [Nitrobacter hamburgensis X14] Length = 206 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 112/206 (54%), Positives = 146/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V L+G G + +S+ IF L+P++ ++ R + WQ +++ G K+KGR+E+ TG Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM+ QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+LALRHALS K Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID+ E KTK LV F L L+NALI+DG + F AARNIPNI++LP+QGI Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLTNALIVDGAAVHAGFATAARNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A++ALE RFK Sbjct: 181 NVYDILRRRKLVLTKAAVDALEARFK 206 >gi|81429376|ref|YP_396377.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K] gi|109893600|sp|Q38UR3|RL4_LACSS RecName: Full=50S ribosomal protein L4 gi|78611019|emb|CAI56071.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K] Length = 207 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ I+A++P + ++ + Q R G K RS V Sbjct: 1 MANVTLFKQDGSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D+ KTK LD++ +++ + L+ARN+PN+ ++P G Sbjct: 121 NDLIVVDSFSFDAPKTKEFAEVLNKLDVNTKVLVVLEDGNDFTALSARNLPNVTVVPADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+L+++A+ +E+ Sbjct: 181 INVLDVVGNQKLILTQAALSKIEEVL 206 >gi|170754589|ref|YP_001783120.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra] gi|226730644|sp|B1IGF3|RL4_CLOBK RecName: Full=50S ribosomal protein L4 gi|169119801|gb|ACA43637.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra] Length = 206 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAMKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V + D LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNSFDAKKTLIIT-NNAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDLLKYDKVVITKDAVSKIEEVY 205 >gi|110803426|ref|YP_699662.1| 50S ribosomal protein L4 [Clostridium perfringens SM101] gi|122956495|sp|Q0SQE5|RL4_CLOPS RecName: Full=50S ribosomal protein L4 gi|110683927|gb|ABG87297.1| 50S ribosomal protein L4 [Clostridium perfringens SM101] Length = 204 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLNFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIEGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|168334351|ref|ZP_02692538.1| ribosomal protein L4/L1e [Epulopiscium sp. 'N.t. morphotype B'] Length = 207 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 111/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G+ G +S+ + IF ++ ++ ++ + + +R G +K R+EV Sbjct: 1 MANVSVLNMEGKQVGEVSLDDGIFGVEIKEHLVHQAVVSYLANQRQGTQCTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKG GRAR S Q+ GGG F P P + +K R AL+ AL+ + Sbjct: 61 GRKPWRQKGGGRARQGSIRSPQWTGGGVVFAPKPRDYSFKVNRKERQQALKCALTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D L E KTK +V AL+L AL++ N ++AA NI + V Sbjct: 121 KKIVVLDELKLTEAKTKSMVKVLDALNLKKALVVTEGDCAMNVKIAAGNIQGVKTSAVNN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD+L+ V++K A+ +E+ +K Sbjct: 181 INVYDVLKYDTFVVTKEALSKIEEVYK 207 >gi|325261495|ref|ZP_08128233.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5] gi|324032949|gb|EGB94226.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5] Length = 206 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q R G K+K R+EV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLNDAVFGVDVNEHLVHMAVVSQLANNRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +VID L E KTK L+++ AL++ ++N +++ARNI + Sbjct: 121 NKFIVIDELNFDEIKTKKFQEVLNNLNVNKALVVL-EDGNKNVEISARNIKEVKTAHTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + ++++K+A+ +E+ + Sbjct: 180 INVFDILKYNTVIVTKAAVATIEEVY 205 >gi|168181865|ref|ZP_02616529.1| 50S ribosomal protein L4 [Clostridium botulinum Bf] gi|237796941|ref|YP_002864493.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657] gi|259491549|sp|C3KVQ0|RL4_CLOB6 RecName: Full=50S ribosomal protein L4 gi|182674730|gb|EDT86691.1| 50S ribosomal protein L4 [Clostridium botulinum Bf] gi|229261648|gb|ACQ52681.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V A + LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFNAKKTLIIT-NNAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K+V++K A+ +E+ + Sbjct: 180 INVYDILKYDKVVITKDAVSKIEEVY 205 >gi|331091666|ref|ZP_08340500.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403423|gb|EGG82982.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G I +++ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGNEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK L++S AL++ +RN +L+ARNI + Sbjct: 121 NKFIVLDEINFGEIKTKNFQNVLNNLNVSKALVVL-EDDNRNAELSARNIAAVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+ +E +E+ + Sbjct: 180 INVYDILKYNTVVTTKAVVEKIEEVY 205 >gi|256159967|ref|ZP_05457685.1| 50S ribosomal protein L4 [Brucella ceti M490/95/1] gi|256255198|ref|ZP_05460734.1| 50S ribosomal protein L4 [Brucella ceti B1/94] gi|261222394|ref|ZP_05936675.1| ribosomal protein L4 [Brucella ceti B1/94] gi|265998359|ref|ZP_06110916.1| ribosomal protein L4 [Brucella ceti M490/95/1] gi|82798206|gb|ABB91855.1| ribosomal protein L4 [Brucella ceti] gi|260920978|gb|EEX87631.1| ribosomal protein L4 [Brucella ceti B1/94] gi|262552827|gb|EEZ08817.1| ribosomal protein L4 [Brucella ceti M490/95/1] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|260468553|ref|ZP_05813720.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075] gi|259028709|gb|EEW30018.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 122/206 (59%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +SE+IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPKKVR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ID L E KTK L+ F L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLSNALVIGGAELDQNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|238922831|ref|YP_002936344.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656] gi|259491558|sp|C4ZBD5|RL4_EUBR3 RecName: Full=50S ribosomal protein L4 gi|238874503|gb|ACR74210.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656] gi|291523733|emb|CBK89320.1| LSU ribosomal protein L4P [Eubacterium rectale DSM 17629] gi|291528801|emb|CBK94387.1| LSU ribosomal protein L4P [Eubacterium rectale M104/1] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ I +++ IF ++ + ++ + Q KR G K+K RSEV Sbjct: 1 MANVAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK V + L++ AL++ +D +A NIP + Sbjct: 121 NKFVVVDELKLDEIKTKKFVEVLKNLNVEKALVVL-NDMDEKVIASAANIPTVKTTQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L+ +V++K+A+ +E+ + Sbjct: 180 LNVFDVLKYDTVVVTKAAVATIEEVY 205 >gi|307946287|ref|ZP_07661622.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4] gi|307769951|gb|EFO29177.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 101/206 (49%), Positives = 146/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L+G G I+VS++IF L+P+ ++ RV+RWQ +++ G K+ RSEV T Sbjct: 1 MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKTLQRSEVTGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGP+ H LPKKVR L L+H LS K ++ Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPIVRDHSHDLPKKVRVLGLKHVLSAKAKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + E KTK L + L++ALIIDG ++D NF LA+RNIP++++LPVQGI Sbjct: 121 SLIVVEDAKAAEAKTKALKEQLAKAGLTSALIIDGAEVDANFALASRNIPHVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI++ + LVL+K+A+ ALE+RFK Sbjct: 181 NVYDIMQANTLVLTKAAVSALEERFK 206 >gi|291542036|emb|CBL15146.1| LSU ribosomal protein L4P [Ruminococcus bromii L2-63] Length = 207 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V +++G++ G I ++E +F ++P ++ +++ +R G + RSEV+ Sbjct: 1 MPNLAVVDMEGKNVGTIELAESVFGIEPNAAVMHQMVVNYLAAQRQGTQSALTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++ KKVR LA++ A S K Sbjct: 61 GKKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYRFSVNKKVRRLAMKSAFSSKVME 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D++ E KTK +V A+ +I ++D +A NIP + V Sbjct: 121 NELIVVDSISMDEYKTKKIVAMLSAIGAEKKALIVLPEVDSKVIKSANNIPGVKTAQVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL++ K A+ +E+ + Sbjct: 181 LNVYDILNADKLIIVKDAVSKIEEVY 206 >gi|148381420|ref|YP_001255961.1| ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502] gi|153933556|ref|YP_001385795.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397] gi|153934780|ref|YP_001389202.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall] gi|153940969|ref|YP_001392833.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland] gi|168178833|ref|ZP_02613497.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916] gi|226950932|ref|YP_002806023.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto] gi|166234655|sp|A7FZ68|RL4_CLOB1 RecName: Full=50S ribosomal protein L4 gi|166234656|sp|A5I7K5|RL4_CLOBH RecName: Full=50S ribosomal protein L4 gi|166234657|sp|A7GJ73|RL4_CLOBL RecName: Full=50S ribosomal protein L4 gi|254803725|sp|C1FMV0|RL4_CLOBJ RecName: Full=50S ribosomal protein L4 gi|148290904|emb|CAL85040.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502] gi|152929600|gb|ABS35100.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397] gi|152930694|gb|ABS36193.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall] gi|152936865|gb|ABS42363.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland] gi|182670131|gb|EDT82107.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916] gi|226844588|gb|ACO87254.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto] gi|295320813|gb|ADG01191.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613] gi|322807805|emb|CBZ05380.1| LSU ribosomal protein L4p (L1e) [Clostridium botulinum H04402 065] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + + KTK +V + + LII + N +ARNI + ++PV Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNSFNAKKTLIIT-NNAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205 >gi|187934984|ref|YP_001884474.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B] gi|188589298|ref|YP_001919673.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43] gi|251779469|ref|ZP_04822389.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226730642|sp|B2UYB1|RL4_CLOBA RecName: Full=50S ribosomal protein L4 gi|226730643|sp|B2TIH6|RL4_CLOBB RecName: Full=50S ribosomal protein L4 gi|187723137|gb|ACD24358.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B] gi|188499579|gb|ACD52715.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43] gi|243083784|gb|EES49674.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ G I ++ ++F ++ + L +V+ KR G +K R+EV Sbjct: 1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK + A + LII + + +ARNI ++++PV Sbjct: 121 GQMVVLESLSFEAPKTKQFIEMLSAFNAKKTLIIT-AESNEAVYKSARNIQGVSVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205 >gi|296449798|ref|ZP_06891567.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP08] gi|296877862|ref|ZP_06901884.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP07] gi|296261396|gb|EFH08222.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP08] gi|296431162|gb|EFH16987.1| ribosomal protein L4/L1 family protein [Clostridium difficile NAP07] Length = 217 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 11 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 71 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 190 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216 >gi|110180290|gb|ABG54388.1| 23S ribosomal protein L4 [Brucella pinnipedialis] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRA H S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRASHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|126697641|ref|YP_001086538.1| 50S ribosomal protein L4 [Clostridium difficile 630] gi|260681847|ref|YP_003213132.1| 50S ribosomal protein L4 [Clostridium difficile CD196] gi|260685445|ref|YP_003216578.1| 50S ribosomal protein L4 [Clostridium difficile R20291] gi|260208010|emb|CBA60188.1| 50S ribosomal protein L4 [Clostridium difficile CD196] gi|260211461|emb|CBE01581.1| 50S ribosomal protein L4 [Clostridium difficile R20291] Length = 217 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 11 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 71 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 190 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216 >gi|223042572|ref|ZP_03612621.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14] gi|314934296|ref|ZP_07841655.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87] gi|222444235|gb|EEE50331.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14] gi|313652226|gb|EFS15989.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87] Length = 207 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGFTVVDSFGFDAPKTKEFKNVLSTLEQPKKVLVVTEDEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206 >gi|229825320|ref|ZP_04451389.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC 49176] gi|229790692|gb|EEP26806.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC 49176] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ IFA++ ++ ++ R + Q R G +K R+ V Sbjct: 1 MANISVLNMEGKEVGSLELNDAIFAVEVKEHLMHRAVVLQLANNRQGTQSAKTRAAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+RGGG F P P + +K + A+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRSPQWRGGGVVFAPQPRDYSFKMNRKEKQAAICSALTTKLNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D E KTK + + ALI+ G + + N L+ARN+ ++ Sbjct: 121 NKLIVLDEFKLGEIKTKAAKKVLEDIKANKALIVLG-EKEENVILSARNLESVETTLTNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL LV++K A+ +E+ + Sbjct: 180 INVYDILNHDSLVMTKDAVSKIEEVY 205 >gi|187776577|ref|ZP_02993050.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC 15579] gi|187775236|gb|EDU39038.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC 15579] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + KTK +V A D LII + N +ARNI + ++PV Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIIT-NNSEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K+V++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205 >gi|289435897|ref|YP_003465769.1| hypothetical protein lse_2536 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172141|emb|CBH28687.1| rplD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313636112|gb|EFS01986.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171] Length = 207 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVASESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206 >gi|150015044|ref|YP_001307298.1| 50S ribosomal protein L4 [Clostridium beijerinckii NCIMB 8052] gi|189029495|sp|A6LPR2|RL4_CLOB8 RecName: Full=50S ribosomal protein L4 gi|149901509|gb|ABR32342.1| ribosomal protein L4/L1e [Clostridium beijerinckii NCIMB 8052] Length = 206 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G + ++E++FA + + L +V+ KR G +K RSEV Sbjct: 1 MPTVGVFNKEGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L + KTK ++ +AL+ + ALII + + +ARNI I+++P Sbjct: 121 NQMIVLDSLNFEAPKTKSMIEMLKALEANKALIIT-AESNEVVYKSARNIQGISVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ KL+++K A+ +E+ + Sbjct: 180 INVYDLLKYEKLIITKDAVSKIEEVY 205 >gi|319893199|ref|YP_004150074.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius HKU10-03] gi|317162895|gb|ADV06438.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius HKU10-03] gi|323463753|gb|ADX75906.1| ribosomal protein L4 [Staphylococcus pseudintermedius ED99] Length = 207 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVYKVDGSKAGTVELSDSVFGIEPNNDVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYGYKMPKKMRRLALRSALSYKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D+ + KTK T L+L +++ D N +L+ARNIP + + +G Sbjct: 121 NGFKIVDSFNLEAPKTKEFKTTLTNLELPKKVLVVTVGEDVNVELSARNIPGVTITTPEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV ++ +++++ A + +E+ Sbjct: 181 LNVLELTHADSVLITQEAAKKVEEVL 206 >gi|163796918|ref|ZP_02190875.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199] gi|159177907|gb|EDP62456.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199] Length = 206 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 99/206 (48%), Positives = 129/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLD E G I + + IF L P++ ILARV+ WQ ++R G K+K SE++ T Sbjct: 1 MKLEVTNLDAEKTGEIDLDDSIFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +QFRGG GPV H LPKKVR L L+ ALS K S Sbjct: 61 KKPFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + E KTK L +F L + L+IDG +L+ F AARNIP +++LP QG Sbjct: 121 QLIVLDAASTDEAKTKLLAAKFEKLGWQSVLVIDGPELNEGFARAARNIPRVDVLPQQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL++ A+E LE R K Sbjct: 181 NVYDILRRETLVLTRGAVEHLEARLK 206 >gi|260438215|ref|ZP_05792031.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM 2876] gi|292809407|gb|EFF68612.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM 2876] Length = 206 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G+ G + +++ +F ++ ++ + + Q KR G +K RSEV+ Sbjct: 1 MAKVSVYNIEGKVVGDMELNDAVFGVEVNTHLVHQAVVLQLANKRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK ++LAL+ L+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGIVFAPKPRDYSFKMNKKEKNLALKSVLTTKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK +V + L++ AL++ ++N L++RNIP + Sbjct: 121 NKFIVVDGLSFDEIKTKNMVNVLKNLEVKKALVVTDDD-NKNVTLSSRNIPGVKTAFTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ K+V++K I +E+ + Sbjct: 180 INVYDILKYDKMVVAKDVISKIEEVY 205 >gi|229829428|ref|ZP_04455497.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM 14600] gi|229791859|gb|EEP27973.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM 14600] Length = 206 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ + +++ +F ++ ++ + Q KR G K+K RSEV Sbjct: 1 MAKVSVFNMEGKEVEQMELADSVFGVEVNDHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P L +K + AL ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGVVVFAPTPRDYSFKLNRKEKRAALLSALSSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L E KTK + L + AL++ G Q D ++ARNIP++ Sbjct: 121 NKLIVVDQLAFDEIKTKKFAEVLKNLKVEKALVVLG-QDDEKAIISARNIPDVKTAQTNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV++K A++++E+ + Sbjct: 180 INVYDILKYNTLVVTKEAVKSIEEVY 205 >gi|170759420|ref|YP_001788820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree] gi|226730645|sp|B1KSM4|RL4_CLOBM RecName: Full=50S ribosomal protein L4 gi|169406409|gb|ACA54820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree] Length = 206 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +GE G + +++ +F ++ + +V++ KR G +K R+EV+ Sbjct: 1 MAKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ +A++ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + + KTK +V A + LII + N +ARNI + ++PV Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNAFNAKKTLIIT-NNAEENVYKSARNIEGVQIIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDVLKYDKVIITKDAVSKIEEVY 205 >gi|315652353|ref|ZP_07905345.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986] gi|315485476|gb|EFU75866.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986] Length = 206 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + +AL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D+ E KTK + L++ AL++ + ++N L+ RNI + + Sbjct: 121 NKFIVVDDFSMGEIKTKKMQQTLNNLNVKKALVV-CAENEKNTVLSVRNIYGVKAASPKT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V SK A++ +E+ + Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205 >gi|116873997|ref|YP_850778.1| 50S ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461454|sp|A0ALW7|RL4_LISW6 RecName: Full=50S ribosomal protein L4 gi|116742875|emb|CAK21999.1| ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 207 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK T + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFATFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206 >gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745] gi|122265374|sp|Q03EB7|RL4_PEDPA RecName: Full=50S ribosomal protein L4 gi|116103312|gb|ABJ68455.1| LSU ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745] Length = 207 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +S+ DG G + ++ DIF ++P ++ + Q R G K RS V Sbjct: 1 MANVSLFKQDGTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++PKK+R LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK L++ ++ + + + LAARN+ N+ ++ +G Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLGNLNVDKKALLVLEEDNESAVLAARNLSNVKIVEPEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV DI+ KLV+++ A+ +E+ Sbjct: 181 INVLDIMNSDKLVITQKALSQVEEAL 206 >gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1] gi|109893599|sp|Q28UW1|RL4_JANSC RecName: Full=50S ribosomal protein L4 gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1] Length = 206 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 126/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LDG+ G + + E +F L+P+ IL RV+RWQ + G K K R EV+Y+ Sbjct: 1 MKVDVIKLDGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R L LRHALS K Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI+++ E KT L + + + ALIIDG +D NF AARNI +++LP G Sbjct: 121 RLVVIESIAMDEAKTSALAKQVKEMGWKRALIIDGSDVDANFAQAARNIEGLDVLPTMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|16801841|ref|NP_472109.1| 50S ribosomal protein L4 [Listeria innocua Clip11262] gi|16804669|ref|NP_466154.1| 50S ribosomal protein L4 [Listeria monocytogenes EGD-e] gi|46908803|ref|YP_015192.1| 50S ribosomal protein L4 [Listeria monocytogenes str. 4b F2365] gi|217966170|ref|YP_002351848.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23] gi|224499304|ref|ZP_03667653.1| 50S ribosomal protein L4 [Listeria monocytogenes Finland 1988] gi|224503575|ref|ZP_03671882.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL R2-561] gi|226225176|ref|YP_002759283.1| ribosomal protein L4 [Listeria monocytogenes Clip81459] gi|254825008|ref|ZP_05230009.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194] gi|254829080|ref|ZP_05233767.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165] gi|254830937|ref|ZP_05235592.1| 50S ribosomal protein L4 [Listeria monocytogenes 10403S] gi|254854163|ref|ZP_05243511.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503] gi|254899918|ref|ZP_05259842.1| 50S ribosomal protein L4 [Listeria monocytogenes J0161] gi|254912876|ref|ZP_05262888.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818] gi|254931099|ref|ZP_05264458.1| ribosomal protein L4 [Listeria monocytogenes HPB2262] gi|254937256|ref|ZP_05268953.1| ribosomal protein L4 [Listeria monocytogenes F6900] gi|254991853|ref|ZP_05274043.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-064] gi|255017640|ref|ZP_05289766.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-515] gi|255022701|ref|ZP_05294687.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208] gi|255027145|ref|ZP_05299131.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-003] gi|255029694|ref|ZP_05301645.1| 50S ribosomal protein L4 [Listeria monocytogenes LO28] gi|255519641|ref|ZP_05386878.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-175] gi|284800483|ref|YP_003412348.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578] gi|284993669|ref|YP_003415437.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923] gi|290891816|ref|ZP_06554813.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071] gi|300763618|ref|ZP_07073616.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017] gi|46577145|sp|P61054|RL4_LISIN RecName: Full=50S ribosomal protein L4 gi|46577146|sp|P61055|RL4_LISMO RecName: Full=50S ribosomal protein L4 gi|67461151|sp|Q71WE7|RL4_LISMF RecName: Full=50S ribosomal protein L4 gi|254803741|sp|B8DB09|RL4_LISMH RecName: Full=50S ribosomal protein L4 gi|259491564|sp|C1KZH9|RL4_LISMC RecName: Full=50S ribosomal protein L4 gi|16412119|emb|CAD00709.1| ribosomal protein L4 [Listeria monocytogenes EGD-e] gi|16415316|emb|CAC98006.1| ribosomal protein L4 [Listeria innocua Clip11262] gi|46882076|gb|AAT05369.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. F2365] gi|217335440|gb|ACK41234.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23] gi|225877638|emb|CAS06352.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601490|gb|EEW14815.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165] gi|258607555|gb|EEW20163.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503] gi|258609862|gb|EEW22470.1| ribosomal protein L4 [Listeria monocytogenes F6900] gi|284056045|gb|ADB66986.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578] gi|284059136|gb|ADB70075.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923] gi|290558410|gb|EFD91927.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071] gi|293582646|gb|EFF94678.1| ribosomal protein L4 [Listeria monocytogenes HPB2262] gi|293590875|gb|EFF99209.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818] gi|293594249|gb|EFG02010.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194] gi|300515895|gb|EFK42944.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017] gi|307572220|emb|CAR85399.1| rplD [Listeria monocytogenes L99] gi|328469804|gb|EGF40721.1| 50S ribosomal protein L4 [Listeria monocytogenes 220] Length = 207 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK + + + +I N +L+ARN+ I ++P + Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V ++ + KL+++K+A+E +E+ Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206 >gi|153952862|ref|YP_001393627.1| 50S ribosomal protein L4 [Clostridium kluyveri DSM 555] gi|219853527|ref|YP_002470649.1| hypothetical protein CKR_0184 [Clostridium kluyveri NBRC 12016] gi|189029496|sp|A5N4P8|RL4_CLOK5 RecName: Full=50S ribosomal protein L4 gi|254803727|sp|B9DYB0|RL4_CLOK1 RecName: Full=50S ribosomal protein L4 gi|146345743|gb|EDK32279.1| RplD [Clostridium kluyveri DSM 555] gi|219567251|dbj|BAH05235.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 206 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G+ +S+ +F ++ Q ++ +V+ KR G +K R+EV+ Sbjct: 1 MPIVGLFNKEGQKITDFELSDKVFGVEVNQYVMHQVVVALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P ++PK R LA++ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGVVFAVKPRSYRISVPKSARRLAMKSALSSKVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I+V+++L KTK +V A + LI+ + ++N +ARNI ++++PV Sbjct: 121 NQIVVLESLEMDTPKTKEVVKILDAFEAKKTLIVT-AESNQNVYKSARNIQGVSVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ KL+++K A+ +E+ + Sbjct: 180 LNVYDLLKFDKLIITKDAVSKIEEVY 205 >gi|266620262|ref|ZP_06113197.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM 13479] gi|288868165|gb|EFD00464.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM 13479] Length = 206 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +++ +F + + ++ + Q KR G K+K R+EV+ Sbjct: 1 MANVSVYNMEGNEVGTLELNDAVFGVNVNEHLVHLAVVSQLANKRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIKLNKKERKLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L +S AL++ G N +ARNIP + V Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVLNNLKVSKALVVVGDD-STNAVKSARNIPAVKTAFVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ A+E+ + Sbjct: 180 INVYDILKYNTVVATKTAVAAIEEVY 205 >gi|289550144|ref|YP_003471048.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis HKU09-01] gi|289179676|gb|ADC86921.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ + KTK L+ +++ D N L+ARNIP + + G Sbjct: 121 NGFTVVDSFGFETPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDISSADSVIITEAAAKKVEEVL 206 >gi|331004122|ref|ZP_08327602.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411532|gb|EGG90942.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str. F0167] Length = 206 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +++ +F + + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + +AL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D+ E KTK + L++ AL++ + ++N L+ RNI + + Sbjct: 121 NKFIVVDDFAMSEIKTKKMQQTLNNLNVKKALVV-CAENEKNTVLSVRNIYGVKAASPKT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V SK A++ +E+ + Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205 >gi|315659226|ref|ZP_07912090.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis M23590] gi|315495651|gb|EFU83982.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis M23590] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +F ++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D+ + KTK L+ +++ D N L+ARNIP + + G Sbjct: 121 NGFTVVDSFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI ++++++A + +E+ Sbjct: 181 LNVLDISSADSVIITEAAAKKVEEVL 206 >gi|209964041|ref|YP_002296956.1| 50S ribosomal protein L4 [Rhodospirillum centenum SW] gi|226730714|sp|B6IRQ7|RL4_RHOCS RecName: Full=50S ribosomal protein L4 gi|209957507|gb|ACI98143.1| ribosomal protein L4 [Rhodospirillum centenum SW] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 133/206 (64%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V+NL+ E G I +++++F L +Q IL R++ WQ ++R G K+KG SE+A T Sbjct: 1 MKTTVKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S QFRGG + FGPV H L KKVR LAL+ ALS K Sbjct: 61 KKPWRQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++ + KTK L + + L L++ALIIDG LD F AARNIP++++LP QG Sbjct: 121 KLFVLEAAKADTHKTKALAAQLKTLGLTSALIIDGANLDETFVRAARNIPHLDVLPEQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A+E LE R K Sbjct: 181 NVYDILRRDVLVLTRNAVEQLEARLK 206 >gi|255654163|ref|ZP_05399572.1| 50S ribosomal protein L4 [Clostridium difficile QCD-23m63] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206 >gi|46396649|sp|Q8XHS4|RL4_CLOPE RecName: Full=50S ribosomal protein L4 Length = 204 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+++L + KTK V A + LII +++ N +ARNI + ++PV Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIRGVTVMPVNN 177 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L C L+++K A+ +E+ + Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203 >gi|110180276|gb|ABG54381.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180280|gb|ABG54383.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRA H S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRACHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|191639427|ref|YP_001988593.1| 50S ribosomal protein L4 [Lactobacillus casei BL23] gi|227533961|ref|ZP_03964010.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630350|ref|ZP_04673381.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067502|ref|YP_003789525.1| 50S ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|226730677|sp|B3WAL6|RL4_LACCB RecName: Full=50S ribosomal protein L4 gi|190713729|emb|CAQ67735.1| 50S ribosomal protein L4 [Lactobacillus casei BL23] gi|227188338|gb|EEI68405.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527962|gb|EEQ66963.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439909|gb|ADK19675.1| Ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|327383516|gb|AEA54992.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W] gi|327386709|gb|AEA58183.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +D++V+D L KTK T L +S+ ++ + AARN+PN+ ++P +G Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAKAARNLPNVKVVPAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+L++SA++ +E+ Sbjct: 181 INVLDVVDYKKLILTQSALQKIEEVL 206 >gi|254973732|ref|ZP_05270204.1| 50S ribosomal protein L4 [Clostridium difficile QCD-66c26] gi|255091121|ref|ZP_05320599.1| 50S ribosomal protein L4 [Clostridium difficile CIP 107932] gi|255099233|ref|ZP_05328210.1| 50S ribosomal protein L4 [Clostridium difficile QCD-63q42] gi|255305016|ref|ZP_05349188.1| 50S ribosomal protein L4 [Clostridium difficile ATCC 43255] gi|255312776|ref|ZP_05354359.1| 50S ribosomal protein L4 [Clostridium difficile QCD-76w55] gi|255515535|ref|ZP_05383211.1| 50S ribosomal protein L4 [Clostridium difficile QCD-97b34] gi|255648630|ref|ZP_05395532.1| 50S ribosomal protein L4 [Clostridium difficile QCD-37x79] gi|306518753|ref|ZP_07405100.1| 50S ribosomal protein L4 [Clostridium difficile QCD-32g58] gi|328887509|emb|CAJ66889.2| 50S ribosomal protein L4 [Clostridium difficile] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V N+ G++ G I +S+ IF ++ +L V++ Q KR G +K R+EV Sbjct: 1 MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + LPKKVR LA++ ALS K + Sbjct: 61 GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK ++ + ++ + N +ARNI + V Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +++ A++ +E+ + Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206 >gi|296447531|ref|ZP_06889453.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b] gi|296254919|gb|EFH02024.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 103/206 (50%), Positives = 142/206 (68%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V + DG++ G I ++++IF L+P+ ++ R++RWQ ++R G K R+++A TG Sbjct: 1 MQIGVTSYDGQEAGSIELADEIFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S+ V QF GGG+AFGPV H LPKKVR+LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSRRVPQFIGGGRAFGPVVRSHEHDLPKKVRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V +N KTK L F L++ALIIDG + NF LAARN+P I++LPV G+ Sbjct: 121 AIIVWENASLDAPKTKMLKAGFDKTGLTSALIIDGAEPQVNFALAARNLPKIDVLPVTGV 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A++ALE R K Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARLK 206 >gi|154505168|ref|ZP_02041906.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149] gi|153794647|gb|EDN77067.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSMKLNKKEKRAALKSALSSRVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +VID + E KTK +L+++ AL++ + N +L+ARNI ++ Sbjct: 121 NKFIVIDEMNFGEIKTKNFQNMLNSLNVNKALVVL-EDGNVNAELSARNIADVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL+ + ++ +K+A+ +E+ + Sbjct: 180 INVFDILKYNTVIATKAAVANIEEVY 205 >gi|83312228|ref|YP_422492.1| 50S ribosomal protein L4 [Magnetospirillum magneticum AMB-1] gi|109893601|sp|Q2W2J2|RL4_MAGMM RecName: Full=50S ribosomal protein L4 gi|82947069|dbj|BAE51933.1| Ribosomal protein L4 [Magnetospirillum magneticum AMB-1] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 127/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +LD + G I ++++IF + + IL R + WQ +++ G K+K SE++ T Sbjct: 1 MKTNVISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV H LPKKVR LAL+ ALS K Sbjct: 61 KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK L R L LS+ L IDG +D NF LA+RNIP +++LP QG Sbjct: 121 KLIVVDAASAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 181 NVYDILRRDTLVLTKDAVAALEARLK 206 >gi|295109478|emb|CBL23431.1| LSU ribosomal protein L4P [Ruminococcus obeum A2-162] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L ALI+ D+N L+ARNI ++ V Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVLTNLKAEKALIVTAGD-DQNVVLSARNIADVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ S +V++K A+ ++E+ + Sbjct: 180 INVYDVMKHSTVVVTKDAVASIEEVY 205 >gi|256369656|ref|YP_003107166.1| 50S ribosomal protein L4 [Brucella microti CCM 4915] gi|255999818|gb|ACU48217.1| 50S ribosomal protein L4 [Brucella microti CCM 4915] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDADKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|239623348|ref|ZP_04666379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522314|gb|EEQ62180.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + AL+ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK +L ++ AL++ D+N L+ARN+ ++ V Sbjct: 121 NKFIVVDELKFDEIKTKKFQGVMDSLKVNKALVVL-ADNDQNTVLSARNVADVKTAQVDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + +V +K+A+ ++E+ + Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205 >gi|260577180|ref|ZP_05845157.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2] gi|259020654|gb|EEW23973.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2] Length = 206 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 128/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I++ E +F L+P+ IL RV+RWQ + + G + R+EV+Y+ Sbjct: 1 MKLDVIKLDGGKAGSITLDEALFGLEPRADILHRVVRWQRAKAQAGTHSTLTRAEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H LPKK R+L LRHALS K + Sbjct: 61 KKIYKQKGTGGARHGSKKAPIFRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D + K+ L + L LIIDG ++D NF LAARNI I++LP G Sbjct: 121 ELIILDVATMADAKSSILAKAAKELGWKRVLIIDGAEVDANFALAARNIEGIDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ +LV++K+ +EALE R K Sbjct: 181 NVYDILKRDQLVITKAGVEALEARLK 206 >gi|227512865|ref|ZP_03942914.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577] gi|227522993|ref|ZP_03953042.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290] gi|227083865|gb|EEI19177.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577] gi|227089811|gb|EEI25123.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +S+++DIF ++P ++ + Q +R G K RS V Sbjct: 1 MTDVALYKQDGSQNGTVSLNDDIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+LV + KTK L++S +I + L+A N+ N+ ++ G Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206 >gi|90962405|ref|YP_536321.1| 50S ribosomal protein L4 [Lactobacillus salivarius UCC118] gi|227891545|ref|ZP_04009350.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741] gi|301300211|ref|ZP_07206423.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a] gi|122448605|sp|Q1WS91|RL4_LACS1 RecName: Full=50S ribosomal protein L4 gi|90821599|gb|ABE00238.1| LSU ribosomal protein L1E [Lactobacillus salivarius UCC118] gi|227866692|gb|EEJ74113.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741] gi|300215030|gb|ADJ79446.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713] gi|300852152|gb|EFK79824.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 207 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + ++E IF ++P ++ + Q R G K RS V Sbjct: 1 MPTVALFKQDGNQNGEVQLNEAIFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L KTK L++++ +++ + LAARN+ N+ ++P +G Sbjct: 121 ESLVVVDALNFDAPKTKAFAEVLSNLNVNSKVLVVLEDDNTTAALAARNLKNVTVIPAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ KLV+++ A+ +E+ Sbjct: 181 LNVLDVINNDKLVITQGALSQVEEVL 206 >gi|167748431|ref|ZP_02420558.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662] gi|317472036|ref|ZP_07931368.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA] gi|167652423|gb|EDR96552.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662] gi|316900440|gb|EFV22422.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA] Length = 206 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+SV N++G + +++++ IF ++ + ++ + Q R G +K RSEV Sbjct: 1 MAEVSVLNMEGNEVEKLNLNDGIFGVEINEHLVHLAVVSQLANNRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPKPREYSKKLNKKERRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + KTK + L++ AL+I G + D N L+ARNIP + Sbjct: 121 NKFIVVDEFKFDDVKTKNVANMLNNLNVKKALVIMGDKND-NLILSARNIPGVKTALTST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+SK A+ +E+ + Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205 >gi|225387236|ref|ZP_03757000.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme DSM 15981] gi|225046654|gb|EEG56900.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme DSM 15981] Length = 206 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ + ++ + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGSMELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPVPRDYTITLNKKEKRAALKSALTSRVQG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D L E KTK L ++ AL++ D+N L+ARNI ++ V Sbjct: 121 GKFIVVDELKFDEIKTKKFQNVMDNLKVNKALVVL-ADNDQNAVLSARNIADVKTTQVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ S +V +K+A+ +E+ + Sbjct: 180 MNVYDILKYSTVVATKAAVATIEEVY 205 >gi|325294397|ref|YP_004280911.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064845|gb|ADY72852.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM 11699] Length = 208 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N ++ G +++ ++I ++ + ++WQ ++R G +K R EV G Sbjct: 1 MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRAR S Q+ GGG GP P + LPKKVR +ALR ++ + Sbjct: 61 KKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPKKVRKVALRSVVAGRLQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++ ++ KTK + R L L N ++I +L+ N + RN+PN+ LL ++G Sbjct: 121 NLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVVPELEENTYKSFRNLPNVKLLEIEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K + KS + LE+R Sbjct: 181 LNVYDMLCYDKCIFFKSTLPKLEERL 206 >gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1] gi|229313915|gb|EEN79888.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1] Length = 207 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L + KTK + L +++ ++ + AARN+PN+ ++P +G Sbjct: 121 GDLVVVDGLSFDDPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D + KL+L++SA++ +E+ Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206 >gi|328953157|ref|YP_004370491.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109] gi|328453481|gb|AEB09310.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109] Length = 207 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++D G +S+ +DIF + Q IL V+ Q +R G + +KGRSEV Sbjct: 1 MPVIDVYDIDRNKVGEVSLRDDIFNIPVQGHILHEVVTMQLACRRAGTASTKGRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + PKKVR LAL+ ALS K Sbjct: 61 GHKPWRQKGTGRARVGSIRSPLWRGGGVVFGPKPRSYAYKPPKKVRRLALKMALSSKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D KTK + ++ AL I ++ L++RN+P + ++ +G Sbjct: 121 GQLLILDQYPYDSPKTKDFIRVLEKFQINKALFIT-ADDNQVLTLSSRNVPYVQIMRTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDILR LV+ + AI +E+RF Sbjct: 180 INVYDILRYDHLVVFQPAISQIEERF 205 >gi|199598833|ref|ZP_03212244.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001] gi|258540678|ref|YP_003175177.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus Lc 705] gi|199590245|gb|EDY98340.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001] gi|257152354|emb|CAR91326.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus Lc 705] Length = 207 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK + L +++ ++ + AARN+PN+ ++P +G Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D + KL+L++SA++ +E+ Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206 >gi|167759861|ref|ZP_02431988.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704] gi|167662480|gb|EDS06610.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704] Length = 206 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +S+ +F ++ + +L + Q KR G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGTMDLSDAVFGVEINEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTAKVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D + E KTK + LD+S AL++ + N +++ARNI +I Sbjct: 121 KKFIVVDEIKLDEIKTKNFANILKNLDVSKALVVL-EDGNTNAEVSARNIADIKTARSNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 180 INVYDILKYNTVIATKAAVANIEEVY 205 >gi|163851586|ref|YP_001639629.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1] gi|218530395|ref|YP_002421211.1| 50S ribosomal protein L4 [Methylobacterium chloromethanicum CM4] gi|240138754|ref|YP_002963226.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens AM1] gi|254561354|ref|YP_003068449.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens DM4] gi|226730686|sp|A9W4Q2|RL4_METEP RecName: Full=50S ribosomal protein L4 gi|254803743|sp|B7L0R2|RL4_METC4 RecName: Full=50S ribosomal protein L4 gi|163663191|gb|ABY30558.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1] gi|218522698|gb|ACK83283.1| ribosomal protein L4/L1e [Methylobacterium chloromethanicum CM4] gi|240008723|gb|ACS39949.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens AM1] gi|254268632|emb|CAX24591.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Methylobacterium extorquens DM4] Length = 206 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + LDG G + ++E I+ L+P+ IL R++R+Q ++R G K RS+V T Sbjct: 1 MKLDITTLDGGSAGSVELNEAIYGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH + S QFRGGG+AFGPV H LPKKVR+LAL+HALS K ++ Sbjct: 61 KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK ++ RF L LS+ALII G ++D NF AAR IP I++LPVQGI Sbjct: 121 TLIVVDDIKVDNHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A++ALE+RFK Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206 >gi|13470552|ref|NP_102121.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099] gi|46577286|sp|Q98N56|RL4_RHILO RecName: Full=50S ribosomal protein L4 gi|14021294|dbj|BAB47907.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099] Length = 206 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 122/206 (59%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + L G+D G + +SE+IF L P++ IL RV+RWQ +K+ G K+KGR+E+A TG Sbjct: 1 MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S QFRGGGKA GPV H LPK VR+L L+HALS K S Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID L E KTK L+ F L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI Sbjct: 121 SIIVIDELKLTEAKTKALIANFATLGLSNALVIGGAELDKNFKLAATNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206 >gi|23014087|ref|ZP_00053924.1| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum MS-1] Length = 206 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 128/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +LD + G I ++++IF L + IL R + WQ +++ G K+K SE++ T Sbjct: 1 MKTNVISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV H LPKKVR LAL+ ALS K Sbjct: 61 KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L R L LS+ L IDG +D NF LA+RNIP +++LP QG Sbjct: 121 KLIVVDNATAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPQQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 181 NVYDILRRETLVLTKDAVAALEARLK 206 >gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190538|gb|EEI70605.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 207 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +S+++D+F ++P ++ + Q +R G K RS V Sbjct: 1 MTDVALYKQDGSQNGTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+LV + KTK L++S +I + L+A N+ N+ ++ G Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206 >gi|110180274|gb|ABG54380.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180278|gb|ABG54382.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 119/206 (57%), Positives = 156/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGT RARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|197303813|ref|ZP_03168849.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC 29176] gi|197297106|gb|EDY31670.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC 29176] Length = 206 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK T L+++ AL++ + D+N +++A+NIP++ V Sbjct: 121 NKFIVVDEMKFDEIKTKKFQTVLNNLNVNKALVVL-EEGDKNAEISAKNIPDVKTARVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + A+E+ + Sbjct: 180 INVYDILKYNTVIATKAVVAAIEEVY 205 >gi|270291132|ref|ZP_06197355.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4] gi|304385413|ref|ZP_07367758.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici DSM 20284] gi|270280528|gb|EFA26363.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4] gi|304328620|gb|EFL95841.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici DSM 20284] Length = 207 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +S+ DG G + ++ DIF ++P ++ + Q R G K RS V Sbjct: 1 MANVSLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++PKK+R LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK L++ ++ + + + LAARN+ N+ ++ G Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEEDNESAVLAARNLSNVKIVEPTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV DI+ KLV+++ A+ +E+ Sbjct: 181 INVLDIMNSDKLVITQKALSQVEEAL 206 >gi|228474532|ref|ZP_04059263.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis SK119] gi|314935833|ref|ZP_07843185.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis subsp. hominis C80] gi|228271195|gb|EEK12563.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis SK119] gi|313656398|gb|EFS20138.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ ++D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NNFTIVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +++++SA + +E+ Sbjct: 181 LNVLDITSADSVIITESAAKKVEEVL 206 >gi|302388087|ref|YP_003823909.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1] gi|302198715|gb|ADL06286.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1] Length = 206 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F + + ++ + Q KR G K+K R+EV+ Sbjct: 1 MANVSVYNMEGKEVGTLELNDAVFGVDVNEHLVHMAVVSQLANKRQGTQKAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P L KK R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKERRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK T L +S AL++ G + N ++ARNI + Sbjct: 121 NKFIVVDELKFDEIKTKKFQTVLNNLKVSKALVVMG-EDSTNAVMSARNIAAVKTAFANT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ S +V +K+A+ A+E+ + Sbjct: 180 INVYDILKYSTVVATKTAVAAIEEVY 205 >gi|153854971|ref|ZP_01996184.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814] gi|149752468|gb|EDM62399.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814] Length = 206 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G I +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVGKIDLSDAVFGVEVNEHLVHMAVVSQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + K+ + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKREKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +VID + +E KTK + LD+S AL++ ++N +L+ARNI ++ Sbjct: 121 NKFIVIDEINFEEAKTKNFANILKNLDVSKALVVL-EDDNKNAELSARNIADVKTAKTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + +E+ + Sbjct: 180 INVYDILKYNTVITTKAVVAKIEEVY 205 >gi|116495946|ref|YP_807680.1| 50S ribosomal protein L4 [Lactobacillus casei ATCC 334] gi|122262654|sp|Q034Y4|RL4_LACC3 RecName: Full=50S ribosomal protein L4 gi|116106096|gb|ABJ71238.1| LSU ribosomal protein L4P [Lactobacillus casei ATCC 334] Length = 207 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRDSLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +D++V+D L KTK T L +S+ ++ + AARN+PN+ ++P +G Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAKAARNLPNVKVVPAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ KL+L++SA++ +E+ Sbjct: 181 INVLDVVDYKKLILTQSALQKIEEVL 206 >gi|291549415|emb|CBL25677.1| LSU ribosomal protein L4P [Ruminococcus torques L2-14] Length = 206 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L E KTK L+++ AL++ ++N +++A+NIP++ Sbjct: 121 NKFIVVDELNFDEIKTKKFQAVLNNLNVNKALVVL-EDGNKNVEISAKNIPDVKTAHTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+ + A+E+ + Sbjct: 180 INVYDILKYNTVIATKAVVAAIEEVY 205 >gi|297588192|ref|ZP_06946836.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC 53516] gi|297574881|gb|EFH93601.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC 53516] Length = 207 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 114/207 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N GE+ G + ++E IF + + ++ V+R Q KR G +K RSEV Sbjct: 1 MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVRNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P +A+PKKVR LA++ L+DK Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTDKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L TK V + + ++ + D + RNI N+ + + Sbjct: 121 NEMIVLDKLSLDAISTKKAVEVLKNIKADKKALVVVDKNDDTLYRSFRNIENVAICEARL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD L+ + LV++ A++ LE+ F+ Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207 >gi|15896382|ref|NP_349731.1| 50S ribosomal protein L4 [Clostridium acetobutylicum ATCC 824] gi|46577285|sp|Q97EH9|RL4_CLOAB RecName: Full=50S ribosomal protein L4 gi|15026198|gb|AAK81071.1|AE007808_24 Ribosomal protein L4 [Clostridium acetobutylicum ATCC 824] gi|325510538|gb|ADZ22174.1| 50S ribosomal protein L4 [Clostridium acetobutylicum EA 2018] Length = 206 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G+ I +SE +F K + L +V+ Q KR G +K R+EV+ Sbjct: 1 MPTVEVFNKEGKKVEDIELSEKVFGAKISESALHQVVVAQLANKRQGTQSAKTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRISIPKSMRRTAMLSALTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK +V A + ALI+ + D+N + RNI ++P Sbjct: 121 KEMIVLDELKIDAPKTKEIVKMLNAFEAKKALIVV-AESDQNVYKSVRNIQGAAVIPANN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ K +++K A+ +E+ + Sbjct: 180 LNVYDILKYDKFIVTKEAVSKIEEVY 205 >gi|258509481|ref|YP_003172232.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG] gi|257149408|emb|CAR88381.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus GG] gi|259650760|dbj|BAI42922.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG] Length = 207 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG + G + +++ I+A++P + ++ + Q R G K RS V+ Sbjct: 1 MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK + + +++ ++ + AARN+PN+ ++P +G Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGIKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D + KL+L++SA++ +E+ Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206 >gi|225016284|ref|ZP_03705476.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum DSM 5476] gi|224950959|gb|EEG32168.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum DSM 5476] Length = 207 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N+ G++ I +S+ IF ++P + +L + +R G + R+EV Sbjct: 1 MPNVAVMNMAGKEVSKIDLSDAIFGIEPNKAVLHMAVVNYLANQRQGTQSTLTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LA++ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRSPQWTHGGVALGPKPRDYSYSLNKKVKRLAMKSALSAKAVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D++ E KTK ++ AL +I ++D +A NIP + V Sbjct: 121 NDLIVVDSIALAEYKTKEVIKMLGALGADKKALIVLPEMDAKVIKSAANIPGVRTTQVNE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL++ ++A +E+ + Sbjct: 181 LNVYDILNHDKLIVVEAAAHKIEEVY 206 >gi|153812866|ref|ZP_01965534.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174] gi|149831078|gb|EDM86167.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174] Length = 206 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L AL++ D+ L+ARNI ++ V Sbjct: 121 NKLVVVDSLALAEAKTKEMQKVLTNLKADKALVVT-ADDDQKVVLSARNIADVQTATVNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ + +V++K A+ ++E+ + Sbjct: 180 INVYDVMKHNTVVVTKDAVASIEEVY 205 >gi|70725804|ref|YP_252718.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435] gi|82581594|sp|Q4L8B3|RL4_STAHJ RecName: Full=50S ribosomal protein L4 gi|68446528|dbj|BAE04112.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ ++DN + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NNFTIVDNFGFEAPKTKEFKNVLTTLEQPKKVLVVTDSEDVNVELSARNIPGVQVSTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +++++SA + +E+ Sbjct: 181 LNVLDITSADSVIITESAAKKVEEVL 206 >gi|260589278|ref|ZP_05855191.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583] gi|331082684|ref|ZP_08331807.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540359|gb|EEX20928.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583] gi|330400303|gb|EGG79945.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA] Length = 206 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ G + +++ +F ++ ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNMEGKEVGTMELNDAVFGVEINDHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK R AL+ L+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWAGGGVVFAPTPRDYSLKMNKKERRAALKSVLTSRVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L E KTK + L++S AL++ D N L+ RNIP++ Sbjct: 121 NKLIVLDELKLDEVKTKAMQNVLNNLNVSKALVVL-ADNDANVVLSTRNIPDVVTALPNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + ++L+K++ A+E+ + Sbjct: 180 INVYDVLKYNTVILTKASAAAIEEVY 205 >gi|315925255|ref|ZP_07921469.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621489|gb|EFV01456.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC 23263] Length = 206 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G +S+ +F ++P + ++ +V+ Q KR G +K RSEV Sbjct: 1 MPKIDILDMKGNVVDSAELSDRVFGIEPNEPVVHQVVVAQLANKRQGTKGTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P + KKVR+LA+R S KF Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWIGGGVIFAPKARDFSKKVNKKVRNLAMRSVFSAKFAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D L KTK ++ A+D AL++ ++D N L+ARNIP V Sbjct: 121 KELRVVDALNFDAPKTKDMIAALAAIDAGKALVVTPEKVD-NVYLSARNIPKTRATTVAE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ LVL+K A+ +E+ + Sbjct: 180 LNVYDMLKYDVLVLTKDALAKIEEVY 205 >gi|291547983|emb|CBL21091.1| LSU ribosomal protein L4P [Ruminococcus sp. SR1/5] Length = 206 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+L E KTK + L AL+I D+N L+ARNI ++ Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVLTNLKAEKALVIT-ADNDQNVVLSARNIADVETATPAT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+++ + +V++K A+ ++E+ + Sbjct: 180 INTYDVMKHNTVVVTKDAVASIEEVY 205 >gi|299820956|ref|ZP_07052845.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601] gi|299817977|gb|EFI85212.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601] Length = 207 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTSAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLAIKSALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++NL KTK + + + ++ N +L+ARN+ I ++P + Sbjct: 121 ENLLVLENLAFDAPKTKDFAAFLKNISVDTKALVVVAGESDNVELSARNLQGITVIPAES 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V ++ KL+++K+A+E +E+ Sbjct: 181 ISVLEVASHDKLIITKAAVEKVEEVL 206 >gi|258646052|ref|ZP_05733521.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM 15470] gi|260403422|gb|EEW96969.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM 15470] Length = 208 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 115/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVTLYNTAGAAAGEIELNDSVFGVEYNEAVIHQAVVRQMANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + +K R LA++ ALS+K + Sbjct: 61 GRKPWKQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKDMTRKARQLAVKSALSEKLRA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK +V A ++ ALI+DG N L+ARNIP + Sbjct: 121 NELIVVDAINFDTPKTKEVVKFLAAFNVDGKALIVDGGTASENTVLSARNIPGVKAYAPS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+N+YDI+ +KL L++ A++ +E+ Sbjct: 181 GLNIYDIVHYTKLFLTQDAVKKIEEVL 207 >gi|121602068|ref|YP_988968.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583] gi|121602137|ref|YP_988998.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583] gi|120614245|gb|ABM44846.1| ribosomal protein L4 [Bartonella bacilliformis KC583] gi|120614314|gb|ABM44915.1| ribosomal protein L4 [Bartonella bacilliformis KC583] Length = 206 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG+ G +SVSE +F L P++ IL RV+RWQ R++ G K +GRS+++ TG Sbjct: 1 MDLIIKTLDGKKTGELSVSEHVFGLVPREDILQRVVRWQLARRQKGTHKVQGRSDISRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARHSS QFRGGGKA GPV H LPKK R+L LR ALS KF +N Sbjct: 61 AKMYKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHGLPKKSRALGLRLALSAKFKAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++VID ++ KTK L T F L +NAL+I G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIVIDEFNLQDPKTKVLATNFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKKAVEALEERFK 206 >gi|331702079|ref|YP_004399038.1| 50S ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929] gi|329129422|gb|AEB73975.1| ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929] Length = 207 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G +++++ IF ++P ++ + Q R G K RS V Sbjct: 1 MTDVALYKQDGSKNGTVALNDGIFGIEPNNNVVFDAIVMQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV LAL+ LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYRLPKKVSRLALKSVLSEKVSD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK LD+S ++ + L+ARN+ N+ ++ QG Sbjct: 121 NKLVVVDTLQFDAPKTKEFAELLGKLDVSTKTLVVLEDDNEKAVLSARNLENVKVVSAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN D+ K+V++K+A+ +E+ Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206 >gi|310659501|ref|YP_003937222.1| 50S ribosomal protein L4 [Clostridium sticklandii DSM 519] gi|308826279|emb|CBH22317.1| 50S ribosomal subunit protein L4 [Clostridium sticklandii] Length = 207 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ + +SE IFA + + + V++ +R G +K R+EV Sbjct: 1 MPKVDVLNINGQKVEELELSESIFAAEISEYAVYEVIKNHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG F P P +++ KKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYSVNKKVRRLALKSVLTTKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + A++ ++ + N + RNIP +++ V Sbjct: 121 GNLIVLDALEMNAPKTKDFIAMLSAVNAGKKALVVTSENSPNVVKSGRNIPGVDITFVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+R L+++K A+ E+ + Sbjct: 181 LNVYDIMRHDSLIITKEAVRKTEEVY 206 >gi|289449461|ref|YP_003475783.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184008|gb|ADC90433.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 207 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 127/206 (61%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V NLDG G I +S+ +F ++P Q ++ +V++ Q +R G +K RSEV+ Sbjct: 1 MAKVDVYNLDGAVIGQIELSDAVFGIEPNQSVMHQVVKNQLANRRQGTGSTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G + + QKGTGRARH S +Q+ GGG FGP P + + KKVR LA++ ALS K Sbjct: 61 GKRPWRQKGTGRARHGSTRSAQYVGGGIIFGPKPRDYHYTVSKKVRRLAIKSALSTKLQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N E KTK VT + L++++ +++ + + N +LAARNI + L Sbjct: 121 KQLIVVENFELAEAKTKNFVTALKKLNVTDRVLVVENEKNVNLELAARNIAKVQLSRANT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+D+L+ L++SK+A+E +++ + Sbjct: 181 INVFDLLKNEVLLISKAAVEKIQEVY 206 >gi|298291439|ref|YP_003693378.1| ribosomal protein L4/L1e [Starkeya novella DSM 506] gi|296927950|gb|ADH88759.1| ribosomal protein L4/L1e [Starkeya novella DSM 506] Length = 206 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 108/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V+ LDG D G +++S++IF L+P+Q IL R++ WQ R++ G ++ RSEV T Sbjct: 1 MELAVKKLDGTDAGSVTLSDEIFGLEPRQDILHRMVVWQLARRQAGTHQTLSRSEVNRTK 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH + S QFRGG KAF PV LPKKVR+LAL+HALS K Sbjct: 61 RKMYKQKGTGGARHGAASAPQFRGGAKAFAPVQHSHAIDLPKKVRALALKHALSSKAKDQ 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V+D+ E KTK L R L LSN L++ G ++D NF LA+RN+ ++++LPVQGI Sbjct: 121 QIVVLDDATLAEPKTKLLKERLAGLGLSNVLVVSGAEVDANFGLASRNVGHLDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A++ALE RFK Sbjct: 181 NVYDILRRQTLVLTKAAVDALEARFK 206 >gi|317131370|ref|YP_004090684.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3] gi|315469349|gb|ADU25953.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3] Length = 207 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N+ GE G I +++ +F ++P + L V+ +R G + RSEV+ Sbjct: 1 MPKATVFNIAGEQVGEIELADSVFGIEPNKTALHTVVVNYLANQRQGTQSTLTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++ GG A GP P + + KKVR LAL+ ALS K + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWKHGGIALGPKPRSYTYTVNKKVRRLALKSALSAKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D + E KTK +VT + S + ++ N +ARNIP + Sbjct: 121 GELVVLDAISLPEIKTKQVVTILSKFETSKKALFVTAGVNENLVKSARNIPGVKTASTGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +K +SK A+ ALE+ + Sbjct: 181 LNVYDLLDSNKFFISKDAVAALEEVY 206 >gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] gi|302379795|ref|ZP_07268279.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3] gi|303234753|ref|ZP_07321379.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4] gi|226730666|sp|B0RZU1|RL4_FINM2 RecName: Full=50S ribosomal protein L4 gi|167830658|dbj|BAG07574.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328] gi|302312383|gb|EFK94380.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3] gi|302494094|gb|EFL53874.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4] Length = 207 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 114/207 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N GE+ G + ++E IF + + ++ V++ Q KR G +K RSEV Sbjct: 1 MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P +A+PKKVR LA++ L++K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L TK V + + ++ + D + RNI N+ + + Sbjct: 121 NEMIVLDKLNLDAISTKKAVEVLKNIKADKKALVVIDKNDDTLYRSFRNIENVAICEAKL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYD L+ + LV++ A++ LE+ F+ Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207 >gi|319938506|ref|ZP_08012900.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1] gi|319806422|gb|EFW03089.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1] Length = 207 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 120/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++++V N +G+ ++E +F ++P + ++ Q R G K K R+EV Sbjct: 1 MLKVAVYNQEGKQVKDTELNELVFGIEPNNQAIFDMVLLQRASWRQGTHKVKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYTFKLNRKVRQLALKSALSQKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D + KTK ++ L+ + +I +++ N L+ARNIP + ++ +G Sbjct: 121 NEMTVLDTITLNAPKTKDMIKVLENLEANRKTLIVMDEVNENVTLSARNIPGVKVIDSKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL C+KLV+++ AI+A+E+ Sbjct: 181 LNVYDILDCTKLVITEGAIKAVEEVL 206 >gi|167767802|ref|ZP_02439855.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1] gi|317497094|ref|ZP_07955421.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710541|gb|EDS21120.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1] gi|291558861|emb|CBL37661.1| LSU ribosomal protein L4P [butyrate-producing bacterium SSC/2] gi|316895639|gb|EFV17794.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 206 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ + ++++IF ++ + ++ + Q R G K+K RSEV Sbjct: 1 MATVSVLNMEGKEVEKLELNDNIFGVEINEHLVHLAVVSQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK R +AL+ AL+ + + Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPREYTKKLNKKERRIALKSALTSRVQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +VID E KTK + ++ AL++ G + D N L+ARN+P + Sbjct: 121 DKFVVIDEFKFDEIKTKNVKAMLDSVGAKKALVVMGSKND-NLVLSARNLPGVKTALTST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V+SK A+ +E+ + Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205 >gi|304391454|ref|ZP_07373396.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130] gi|303295683|gb|EFL90041.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130] Length = 206 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 147/206 (71%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V +DG G +S+S+ +F L+P+Q I+ R++R+Q + R G + +GRS+V TG Sbjct: 1 MELDVTKMDGSKSGKVSLSDTVFGLEPRQDIIQRMVRYQLAKARQGTHQVQGRSDVDRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +MY QKGTG ARH S++ QFRGGGKA GP H L KK R+LALRHALS K + Sbjct: 61 KRMYRQKGTGGARHHSQAAPQFRGGGKAHGPQSRDHSHDLTKKFRALALRHALSAKAQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L +K+ KT L L NAL+I G +LD NF+LAA+NIP+I++LPVQGI Sbjct: 121 TLVVVDDLAAKDPKTAALRGNLGKLGFENALMIGGSELDNNFKLAAQNIPHIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R + LVLSK+A++ALE+RFK Sbjct: 181 NVYDIIRRNTLVLSKAAVDALEERFK 206 >gi|242371895|ref|ZP_04817469.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1] gi|242350402|gb|EES42003.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 V+D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 KGFTVVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTEGEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206 >gi|302344355|ref|YP_003808884.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075] gi|301640968|gb|ADK86290.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075] Length = 206 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + + G I +++++FA + + +L V+ WQ ++R G + +K RSEV Sbjct: 1 MPKVDVYDEKKQKVGEIELADEVFAAEVKAHLLHEVVVWQLAKRRAGTACTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S+ +RGGG GP P + +PKKVR AL+ ALSDK Sbjct: 61 GRKPWRQKGTGRARVGSRRSPLWRGGGTTHGPKPRDYDYNVPKKVRKAALKSALSDKLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ + KTK N L++ D + +ARNIP + +L +G Sbjct: 121 EKLMVLRGFGLEAIKTKAFAEVLATFQTQNVLVVTAG-PDEVLEKSARNIPMVKVLRAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR +L+L + A+ +E+ Sbjct: 180 LNVYDILRYDRLMLLEPAVGRIEEAL 205 >gi|166031658|ref|ZP_02234487.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC 27755] gi|166028635|gb|EDR47392.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC 27755] Length = 206 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G++ I +S+ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVSVYNIEGKEVETIELSDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D+L E KTK + + L++S AL++ + N +L+A+NI + Sbjct: 121 NKFIVVDSLTFDEIKTKNVANALKNLNVSKALVVL-EDGNVNAELSAKNIAGVKTAKTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ + ++ +K+A++A+E+ + Sbjct: 180 INVYDVMKYNTVIATKAAVKAIEEVY 205 >gi|240145877|ref|ZP_04744478.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis L1-82] gi|257202026|gb|EEV00311.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis L1-82] gi|291535431|emb|CBL08543.1| LSU ribosomal protein L4P [Roseburia intestinalis M50/1] Length = 206 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ G + +++ +F ++ + ++ + Q R G K+K RSEV Sbjct: 1 MANVAVYNMEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK V L + AL++ +D N +A N+P + Sbjct: 121 SKFIVVDELKLDSIKTKNFVQVLNNLKVEKALVVL-NDMDTNVIKSASNVPTVKTAQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L+ +V++K A++ +E+ + Sbjct: 180 LNVFDVLKYDTVVVTKDAVKTIEEVY 205 >gi|261264935|gb|ACX55826.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 207 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206 >gi|225376410|ref|ZP_03753631.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM 16841] gi|225211786|gb|EEG94140.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM 16841] Length = 206 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G++ G + +++ IF ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVAVYNMEGKEVGSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F PVP L KK + AL+ AL+ + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L E KTK V L + AL++ D N +A N+ + Sbjct: 121 SKFVVVDELKLDEIKTKKFVEVMNNLKVEKALVVL-NDNDVNVIKSASNLATVKTAQTNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ +V++K A++ +E+ + Sbjct: 180 INVYDILKYDTVVVTKDAVKTIEEVY 205 >gi|110180282|gb|ABG54384.1| 23S ribosomal protein L4 [Brucella ceti] gi|110180286|gb|ABG54386.1| 23S ribosomal protein L4 [Brucella ceti] Length = 206 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 118/206 (57%), Positives = 155/206 (75%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGT RARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 61 SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206 >gi|27468741|ref|NP_765378.1| 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228] gi|57867722|ref|YP_189393.1| 50S ribosomal protein L4 [Staphylococcus epidermidis RP62A] gi|242243948|ref|ZP_04798391.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144] gi|251812048|ref|ZP_04826521.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060] gi|282875343|ref|ZP_06284216.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis SK135] gi|293368434|ref|ZP_06615058.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W2(grey)] gi|46577254|sp|Q8CRG1|RL4_STAES RecName: Full=50S ribosomal protein L4 gi|81673579|sp|Q5HM00|RL4_STAEQ RecName: Full=50S ribosomal protein L4 gi|27316289|gb|AAO05464.1|AE016750_69 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228] gi|57638380|gb|AAW55168.1| ribosomal protein L4 [Staphylococcus epidermidis RP62A] gi|242232581|gb|EES34893.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144] gi|251804382|gb|EES57039.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060] gi|261264939|gb|ACX55828.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] gi|281296108|gb|EFA88629.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis SK135] gi|291317392|gb|EFE57814.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W2(grey)] gi|319400622|gb|EFV88847.1| 50S ribosomal protein L4 [Staphylococcus epidermidis FRI909] gi|329736448|gb|EGG72716.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU028] gi|329737013|gb|EGG73268.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU045] Length = 207 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206 >gi|253580620|ref|ZP_04857884.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39B_FAA] gi|251847991|gb|EES75957.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++G + G + +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MANVTVYNMEGNEVGTMELNDAVFGVEVNEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK R AL+ AL+ K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L + KTK + L AL+I D+N L+ARNI ++ Sbjct: 121 NKLVVVDALTLADVKTKEMQKVLTNLKAEKALVITATD-DKNVILSARNITDVQTATPST 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++ + ++++K A+ ++E+ + Sbjct: 180 INVYDVMNHNTVIVTKDAVASIEEVY 205 >gi|160932200|ref|ZP_02079591.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753] gi|156868802|gb|EDO62174.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G++ G I +S+ +F ++P ++ V+ +R G + RSEV+ Sbjct: 1 MPNVAVFDVTGKEVGKIDLSDAVFGIEPNAVVMHEVVVNYLANQRQGTQSALTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P + + KKVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRSYRYTVNKKVRRLALKSALSSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ KTK + AL +I +D+ +A NIP + V Sbjct: 121 ESLVVLDSMTMDAYKTKTVAAMLNALGAEKKALIVLPSVDQKLIKSANNIPGVKTAQVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL KL++ K A+ +E+ + Sbjct: 181 INVYDILNADKLIVLKDAVAKIEEVY 206 >gi|163815976|ref|ZP_02207346.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759] gi|158448786|gb|EDP25781.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759] Length = 206 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G + + +++ +F ++ + I+ + + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGNEVETLELNDAVFGVEINEHIMHKAVVGQLANSRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L +E KT L AL++ + N L+A NIP + Sbjct: 121 NKLVVVDKLELQEAKTSVFAKILAKLSAPKALVVT-KDKNNNVVLSANNIPTVKTTVANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205 >gi|77462260|ref|YP_351764.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides 2.4.1] gi|126461136|ref|YP_001042250.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17029] gi|221638114|ref|YP_002524376.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131] gi|109893632|sp|Q3J5S1|RL4_RHOS4 RecName: Full=50S ribosomal protein L4 gi|166199853|sp|A3PGL2|RL4_RHOS1 RecName: Full=50S ribosomal protein L4 gi|254803750|sp|B9KL92|RL4_RHOSK RecName: Full=50S ribosomal protein L4 gi|77386678|gb|ABA77863.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides 2.4.1] gi|126102800|gb|ABN75478.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17029] gi|221158895|gb|ACL99874.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131] Length = 206 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD G I + + IF L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKAEVIKLDASPAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V++++ E KT L + L L+IDG ++ NF AARN+ +++LP G Sbjct: 121 NLIVLEDIALAEGKTAMLAKAVKELGWKRVLVIDGADINENFAKAARNLEGVDVLPSIGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|169350796|ref|ZP_02867734.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552] gi|169292382|gb|EDS74515.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+++ V N +G + + ++E +F ++P + L ++ Q R G K K R+EV+ Sbjct: 1 MLKVKVYNQEGAEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ M ++ + KTK +V LD +I ++D N +A NIP + LL + Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLDAPTKTLIVVDEIDENVARSANNIPGVKLLDARR 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL+++++AI+++E+ Sbjct: 181 VNVYDILNSDKLIMTEAAIKSVEEVL 206 >gi|329731224|gb|EGG67594.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU144] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVDLNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206 >gi|73661973|ref|YP_300754.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581595|sp|Q49ZG7|RL4_STAS1 RecName: Full=50S ribosomal protein L4 gi|72494488|dbj|BAE17809.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGTKSGSVELSDAVFAIEPNNNVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D L KTK T L+ +++ D N L+ARNIP + + QG Sbjct: 121 KGLTVVDALNLDAPKTKEFKTVLSNLEQPKKVLVVTESEDVNVALSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +V+++SA + +E+ Sbjct: 181 LNVLDITSADSVVITESAAKKVEEVL 206 >gi|326792606|ref|YP_004310427.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427] gi|326543370|gb|ADZ85229.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N+ G G + +++ IFA++ ++ ++ + + +R G +K R+EV Sbjct: 1 MAKVAVLNMTGAQVGEVELNDSIFAVEVKEHLVHQAVVAHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG AF P P + K R LAL+ AL+ + Sbjct: 61 GRKPWKQKGTGRARQGSIRAVQWVGGGVAFAPKPRNYSIKVNAKERRLALKSALTSRVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D+L E KTK + AL L+ ALI+ + +N L+A+NI I V Sbjct: 121 SKFIVLDSLELAEIKTKAMANVLEALKLNKALIVTEGEASKNVMLSAKNIQGIKTAAVNN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ V++K A+ +E+ + Sbjct: 181 INVYDILKYDTFVVTKDALNKIEEVY 206 >gi|229823534|ref|ZP_04449603.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271] gi|229786978|gb|EEP23092.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271] Length = 207 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 103/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G I ++ +F ++P + ++ + Q R G K RS V Sbjct: 1 MTKVSLFKQDGSQIGEIELNAAVFGVEPNEDVIFDAVIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKVR LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALQSVLSQKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L TK + L + ++ + N +ARN+ N+ ++ Sbjct: 121 GKLVVVDELSFAAPSTKEFKSVLNNLKVDAKTLLVLEGTNANAYFSARNLANVKVIDEGN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ LV++K+A+ +E+ Sbjct: 181 VNVLDVVNYDTLVITKAALSTVEEAL 206 >gi|295093644|emb|CBK82735.1| LSU ribosomal protein L4P [Coprococcus sp. ART55/1] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G++ + +++ +F ++ + I+ + + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGKEVETLELNDAVFGVEINEHIMHKAVVGQLANNRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L +E KT L AL++ + N L+A NIP + Sbjct: 121 NKLVVVDKLDLQEAKTSVFAKILAKLSAPKALVVT-KDKNNNVVLSANNIPTVKTTVANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205 >gi|320352918|ref|YP_004194257.1| 50S ribosomal protein L4P [Desulfobulbus propionicus DSM 2032] gi|320121420|gb|ADW16966.1| LSU ribosomal protein L4P [Desulfobulbus propionicus DSM 2032] Length = 207 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N E G I ++E +F L+ GIL V+ Q +R G + +K R EV+ Sbjct: 1 MATCDIYNTRAEKVGEIDLNESLFNLEVNTGILHEVVCMQRANRRSGNACTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P +++PKKV+ LAL+ A+S + Sbjct: 61 GAKPWRQKGTGRARSGSRTSPVWRGGGTVFGPKPRDYSYSMPKKVKRLALKMAMSARCQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +I+++D KTK + N L++ + + N L+ARN +LPV G Sbjct: 121 GNIVIVDQFDLPAVKTKEFLKVMTNFQFENCLVVT-AESEDNLGLSARNAVGFKVLPVAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ SKL++ +S++ +E+R Sbjct: 180 LNVYDILKHSKLMILQSSLAKIEERL 205 >gi|125975385|ref|YP_001039295.1| 50S ribosomal protein L4P [Clostridium thermocellum ATCC 27405] gi|256005328|ref|ZP_05430294.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360] gi|281419347|ref|ZP_06250362.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20] gi|166234659|sp|A3DJH3|RL4_CLOTH RecName: Full=50S ribosomal protein L4 gi|125715610|gb|ABN54102.1| LSU ribosomal protein L4P [Clostridium thermocellum ATCC 27405] gi|255990764|gb|EEU00880.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360] gi|281406967|gb|EFB37230.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20] gi|316939501|gb|ADU73535.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 1313] Length = 208 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 126/207 (60%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +++G+ G I++ +DIF ++ + + +V+ Q +R G +K +SEV Sbjct: 1 MPKVDVYDINGKVVGEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +Q+ GG A GP P +A+PKK+R LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSAQWVKGGIALGPKPRSYKYAVPKKLRRLALKSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D+L E KTK + + L +++ ++ +RN +L+ARNIP + L V Sbjct: 121 NELLVLDSLNFDEIKTKQMANVLKNLKVNDTTAVLVLADKNRNVELSARNIPGLKTLFVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+R K +++K A+ +E+ + Sbjct: 181 TMNVYDIIRHDKFIITKDAVAKVEEVY 207 >gi|49474403|ref|YP_032445.1| 50S ribosomal protein L4 [Bartonella quintana str. Toulouse] gi|81646966|sp|Q6FZC3|RL4_BARQU RecName: Full=50S ribosomal protein L4 gi|49239907|emb|CAF26305.1| 50s ribosomal protein l4 [Bartonella quintana str. Toulouse] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L +R LDG + G + VSE IF L P++ IL RV+RWQ R + G S+GRS+V+ TG Sbjct: 1 MDLVIRTLDGNEAGRLKVSESIFGLVPREDILQRVVRWQLARHQQGTHHSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R L LR ALS K +N Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D L KE KTK LV+ F L NAL++ G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIIVDELNVKEAKTKMLVSCFSKLGFKNALLVGGKEIDINFSRAASNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206 >gi|49475793|ref|YP_033834.1| 50S ribosomal protein L4 [Bartonella henselae str. Houston-1] gi|81647792|sp|Q6G2W6|RL4_BARHE RecName: Full=50S ribosomal protein L4 gi|49238600|emb|CAF27841.1| 50S ribosomal protein l4 [Bartonella henselae str. Houston-1] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 114/206 (55%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE +F L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLLIKTLDGNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHTLPKKIRALGLRFALSAKLKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D K+ KT+ LV+ F L NAL+I G ++D NF A NIPNI++LP+QGI Sbjct: 121 DLIVVDEFNVKDAKTRMLVSCFSKLGFDNALLIGGNEVDLNFSRATSNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEVLEERFK 206 >gi|302871499|ref|YP_003840135.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47] gi|312135495|ref|YP_004002833.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL] gi|302574358|gb|ADL42149.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47] gi|311775546|gb|ADQ05033.1| ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL] Length = 208 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK ++ + L L N +I + + Q + RNIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTRNIPEVKTLQVG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|217976766|ref|YP_002360913.1| 50S ribosomal protein L4 [Methylocella silvestris BL2] gi|254803745|sp|B8ELG2|RL4_METSB RecName: Full=50S ribosomal protein L4 gi|217502142|gb|ACK49551.1| ribosomal protein L4/L1e [Methylocella silvestris BL2] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 110/206 (53%), Positives = 150/206 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +L+G+ G I + + IF L+P+Q ++AR++R+Q ++R G K+KGR+E+A TG Sbjct: 1 MKIDITSLNGDSAGSIDLDDSIFGLEPRQDLIARMVRYQLAKRRAGTHKTKGRAEIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S V QFRGGG+AFGPV H LPKKVR+LAL+HALS K Sbjct: 61 KKLYKQKGTGSARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALKHALSAKAQGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V + + + KTK L F L +ALIIDG ++++NF LAARNIP I++LPVQGI Sbjct: 121 GIIVWSDASATDAKTKALKASFAKAGLLSALIIDGAEVEQNFALAARNIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++AI+ALE RFK Sbjct: 181 NVYDILRREKLVLTRAAIDALEARFK 206 >gi|284049256|ref|YP_003399595.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731] gi|283953477|gb|ADB48280.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731] Length = 209 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 4/209 (1%) Query: 1 MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +++V ++ G+ G I + + +F ++ + ++ + + Q +R G +K R V Sbjct: 1 MPKVAVYDITGKQTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S + GGG FGP P +P+K R LA+R ALS K Sbjct: 61 GGRKPWKQKGTGRARAGSVRSPLWVGGGTVFGPAPRSHAKDMPRKARRLAIRCALSAKVA 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++V+DNL KTK V + ALII + + N + ++RNI + L Sbjct: 121 EGALVVVDNLTFDAPKTKDAVAMLTGFEAADKKALIITDGE-NENVEKSSRNIEKVKALS 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K++L+K A+ +E+ Sbjct: 180 NDCLNVYDILNAEKVLLAKDAVARIEEVL 208 >gi|313904951|ref|ZP_07838322.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6] gi|313470208|gb|EFR65539.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++G + G + +S+ +F ++ ++ ++ + + Q R G K+K RSEV Sbjct: 1 MANVSVYNMEGAEVGKMELSDAVFGVEIKENLVHQAVVLQLANNRQGTQKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + +K + AL+ L+ K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNRKEKQAALKSVLTSKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK + AL + AL+I G D N L+ARN+ + + Sbjct: 121 NKFLVLDELKFDAPKTKEMKKVIDALKVEKALVIVGKDSD-NAVLSARNLEGVATASAET 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + ++ +KS++ A+E+ + Sbjct: 180 INVYDLLKYNTVIATKSSVAAIEEVY 205 >gi|323136087|ref|ZP_08071170.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242] gi|322399178|gb|EFY01697.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242] Length = 206 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 102/206 (49%), Positives = 137/206 (66%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V + DG+ G I +S+D+F L+P+ ++ R++RWQ ++R G K R+++A TG Sbjct: 1 MKIDVTSFDGQAAGSIELSDDVFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S QFRGGG+AFGP H LPKKVR LAL+HALS K Sbjct: 61 KKMYKQKGTGGARHGSGRAPQFRGGGRAFGPQVRSHEHDLPKKVRQLALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+V + E KTK L F L+NA+II G NF LAARNIP I++LPV+G+ Sbjct: 121 GIIVWEKAELAEPKTKILAGGFAKSGLNNAIIIVGGAPQANFALAARNIPQIDVLPVEGV 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+++A++ALE R K Sbjct: 181 NVYDIIRREKLVLTRAAVDALEARLK 206 >gi|225175673|ref|ZP_03729667.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1] gi|225169002|gb|EEG77802.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1] Length = 208 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N GE +G I +SE +FA K + + + + +R+G +K+K R+EV Sbjct: 1 MPKVALYNTAGEQQGEIELSEAVFASKVNEAAMHQAVLAYLANQRLGTAKTKDRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRARH S +RGGG FGP +LPKK+R LAL+ AL+ K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPDGRRNYKQSLPKKIRRLALKSALTSKVN 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++V+D L KTK +V L+ ++I N +ARNIP + Sbjct: 121 TGSLIVLDQLAMDAPKTKEMVQVLNNLNTGRKVLIITDTPQENVIKSARNIPGVKTTSTN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL LV+++ A+ +E+ F Sbjct: 181 QLNVYDILNTDNLVITRDAVVQVEEVF 207 >gi|302876533|ref|YP_003845166.1| 50S ribosomal protein L4/L1e [Clostridium cellulovorans 743B] gi|307687206|ref|ZP_07629652.1| 50S ribosomal protein L4 [Clostridium cellulovorans 743B] gi|302579390|gb|ADL53402.1| ribosomal protein L4/L1e [Clostridium cellulovorans 743B] Length = 206 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N +G++ G I +++++FA K + + +V+ KR G +K R+EV+ Sbjct: 1 MPTVGLFNKEGQNVGDIQLNDNVFAAKISEAAVHQVVVALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK ++ A++ L+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRVSIPKSMKRTAMKSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L KTK V +A ++ AL++ + + N + RN+ + ++PV Sbjct: 121 NELVVLESLAFDAPKTKEAVAMLKAFEVKKALVVV-AESNENVYKSIRNVEGVEVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ K++++K A+ +E+ + Sbjct: 180 INVYDLLKYPKVLITKDAVSKIEEVY 205 >gi|300857245|ref|YP_003782229.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528] gi|300437360|gb|ADK17127.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528] Length = 206 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ +S+ +F ++ + + +V+ KR G +K R+EV+ Sbjct: 1 MPKVGLFNKEGQKVEDFELSDKVFGVEVNENAVHQVVVALLANKRQGTQSAKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P +L K V+ +A++ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAVKPRDYRISLTKSVKRVAMKSALSSKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++NL + KTK +V A + ALI+ + ++N ++ RNI ++++PV Sbjct: 121 NEMVVLENLELETPKTKEIVKMLDAFNAKKALIVT-AESNKNVYVSGRNIQGVSVIPVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ KL+++K A+ +E+ + Sbjct: 180 LNVYDLLKYEKLIITKDAVSKIEEVY 205 >gi|326803034|ref|YP_004320852.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a] gi|326650179|gb|AEA00362.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a] Length = 207 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I V +DIFA++P + + V+ Q +R G K RS V+ Sbjct: 1 MAKINLYKQDGSQNGEIEVKDDIFAIEPNETAIFDVILMQRASRRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG+AFGP P + LP+KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWVGGGRAFGPTPRSYSYKLPRKVRRLALRSALSRKVSQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D L KTK L+++ +++ + + N L+ARN+ N+ ++ Sbjct: 121 DNLVVVDALSLDAPKTKEFKNILENLNVNEKVLVVVDKDNTNAHLSARNLSNVTVVDEDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+ +K+++++SA+ +E+ Sbjct: 181 VNVYDLENHAKVLITQSALSNVEEVL 206 >gi|313884448|ref|ZP_07818209.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8] gi|312620232|gb|EFR31660.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8] Length = 205 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ IF ++P Q ++ + Q +R G K RS V Sbjct: 1 MAKVTLFKQDGSNAGEIELNDAIFGIEPNQSVVVDAVIMQRASQRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKK+R LA+R ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKMRRLAIRSALSQKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ +V+D L + KTK LDL+ +++ + AARNIPN+ ++ Sbjct: 121 NEFVVVDQL--EATKTKEFKAILSNLDLNRKVLLVLEDNNEAVFRAARNIPNVKVIDQGN 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ K++++++A+ +E+ Sbjct: 179 VNVLDVVNYDKVLITQAALATVEEAL 204 >gi|288957423|ref|YP_003447764.1| large subunit ribosomal protein L4 [Azospirillum sp. B510] gi|288909731|dbj|BAI71220.1| large subunit ribosomal protein L4 [Azospirillum sp. B510] Length = 206 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 132/206 (64%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +++NL+ E G I +S+ +F L + +LAR++ WQ ++R G K+KG SE++ T Sbjct: 1 MKATIKNLNNEAVGEIELSDAVFGLPARTDLLARMVNWQLAKRRSGNHKTKGISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QFRGG FGPV H L KKVR LAL+ ALS K Sbjct: 61 KKPYGQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHELTKKVRKLALKTALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ ++ KTK L R L L++ALIIDG LD NF A+RNIP I++LP QG Sbjct: 121 KLIVLEAAAAETHKTKELAARLATLGLTSALIIDGANLDENFAKASRNIPLIDVLPEQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++A+E LE R K Sbjct: 181 NVYDILRRDTLVLTRNAVEQLEARLK 206 >gi|220928208|ref|YP_002505117.1| 50S ribosomal protein L4 [Clostridium cellulolyticum H10] gi|254803726|sp|B8I7Y0|RL4_CLOCE RecName: Full=50S ribosomal protein L4 gi|219998536|gb|ACL75137.1| ribosomal protein L4/L1e [Clostridium cellulolyticum H10] Length = 207 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G I +S+++F + L V+ Q +R G +K +SEV Sbjct: 1 MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + LPKKV+ +A++ AL+ K Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVKRIAMKSALTSKVSG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I V+D L KTK +V L + ++ ++ + N +ARNIP I V Sbjct: 121 NEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVIDSKNENIVKSARNIPGIKTAYVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K +++K A+E +E+ + Sbjct: 181 LNVFDILKYDKFIITKDAVEKVEEVY 206 >gi|83941499|ref|ZP_00953961.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36] gi|83847319|gb|EAP85194.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36] Length = 205 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID++ S KT L + + L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDVTSD-GKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|312127227|ref|YP_003992101.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108] gi|312793938|ref|YP_004026861.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877366|ref|ZP_07737331.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A] gi|311777246|gb|ADQ06732.1| ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108] gi|311795840|gb|EFR12204.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A] gi|312181078|gb|ADQ41248.1| ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii 177R1B] Length = 208 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK ++ + L L N +I + + Q + RNIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTRNIPEVKTLQVG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|254418759|ref|ZP_05032483.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3] gi|196184936|gb|EDX79912.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3] Length = 212 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LSV LDG+ G + +S+ +F + + ILAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSVIQLDGKAAGDVELSDAVFGISDIRGDILARTVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGPV +LPKK+R+LALRHALS K S Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGFSLPKKIRALALRHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D + KE KT L L + ALII G ++D NF LAARNIP+I++LP G Sbjct: 121 GDLIVVDTVSVKEAKTASLRETLGKLGWTKALIIAGPEVDTNFGLAARNIPHIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+K+AIEA+E RF Sbjct: 181 LNVYDILRADKLVLTKAAIEAIEARF 206 >gi|315222819|ref|ZP_07864705.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus F0211] gi|315188122|gb|EFU21851.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus F0211] Length = 207 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|146278567|ref|YP_001168726.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17025] gi|166199854|sp|A4WVK7|RL4_RHOS5 RecName: Full=50S ribosomal protein L4 gi|145556808|gb|ABP71421.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17025] Length = 206 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD G I + + IF L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKAEVIKLDASSAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+++ E KT L + L L+IDG ++ NF AARN+ I++LP G Sbjct: 121 NLIVIEDIAMSEAKTALLAKAVKELGWKRVLVIDGADINENFAKAARNLEGIDVLPSIGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|83854977|ref|ZP_00948507.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1] gi|83842820|gb|EAP81987.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1] Length = 205 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID+ S KT L + + L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDATSD-GKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|261264931|gb|ACX55824.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 207 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + Q GTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQNGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++D + KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+ ++++++A + +E+ Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206 >gi|160894755|ref|ZP_02075530.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50] gi|156863689|gb|EDO57120.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50] Length = 206 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G++ + +++ +F ++ + ++ + Q R G +K RSEV+ Sbjct: 1 MASVKVYDIEGKEVETLELNDSVFGVEINEHLMHLAVVGQQANSRQGTQSAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F P P + KK + LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSAKLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D + +E KT L +L++ + D+ L+A NIP + Sbjct: 121 DKLVVVDKIELEEVKTSVFAKILANLKAPKSLVVTKDKNDK-VVLSANNIPTVKTTATNS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDIL+ KLVL+K A+ A+E+ + Sbjct: 180 LSVYDILKYDKLVLTKDAVAAIEEVY 205 >gi|290581288|ref|YP_003485680.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025] gi|254998187|dbj|BAH88788.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025] Length = 207 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G +++++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVTLNDAIFGIEPNESVVFDVIISQRANLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +D L + KTK T AL++ + +++ + ++ +L+ARN+PN+ + Sbjct: 121 EKFVAVDALSFEAPKTKEFATVLAALNVDSKVLVILEEGNQAAELSARNLPNVKVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISNIEEVL 206 >gi|306832548|ref|ZP_07465688.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC 700338] gi|304425306|gb|EFM28432.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC 700338] Length = 207 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFTAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|255635327|gb|ACU18017.1| unknown [Glycine max] Length = 312 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 115/202 (56%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + D+F L ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 104 IPVTNFHNEDKGYMVFPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 163 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S QFRGG GP P + KKVR L L+ ALS + + Sbjct: 164 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRCLGLKIALSARAAEGKL 223 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +V ++L KTK +V + ++ + L++ +D +L+ +N+ +N+LP G+NV Sbjct: 224 LVFEDLEVPTHKTKNIVNYYNQMEDTKKLLLVDGTIDEKLKLSTQNLHYVNVLPSIGLNV 283 Query: 184 YDILRCSKLVLSKSAIEALEDR 205 Y IL LV+S++A+ + +R Sbjct: 284 YSILLHDTLVMSRAAVTKIVER 305 >gi|171778376|ref|ZP_02919555.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|288904274|ref|YP_003429495.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34] gi|325977253|ref|YP_004286969.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|171282907|gb|EDT48331.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|288730999|emb|CBI12543.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34] gi|325177181|emb|CBZ47225.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 207 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|227871801|ref|ZP_03990205.1| ribosomal protein L4 [Oribacterium sinus F0268] gi|227842364|gb|EEJ52590.1| ribosomal protein L4 [Oribacterium sinus F0268] Length = 206 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N+ G++ G + +++ IFA + +L + Q KR G K+ R+EV+ Sbjct: 1 MANVSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P + KK + AL+ ALS+ Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTGMNKKEKRAALKSALSNAVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D + E KTK + A ++ A + Q D+N L+ARNI N+ V Sbjct: 121 NKLIVLDEIRFDEIKTKNFQSMLDAFKVNKA-FVLLDQNDQNTVLSARNIQNVKTAQVNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ ++ +K+A+ LE+ + Sbjct: 180 LNVYDVLKYGTVLATKAALLKLEEVY 205 >gi|319940059|ref|ZP_08014413.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV] gi|319810773|gb|EFW07100.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV] Length = 207 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +D+L KT AL L +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVDSLSFTAPKTAEFAKVLAALSLDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|288574663|ref|ZP_06393020.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570404|gb|EFC91961.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM 11002] Length = 206 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + GE G +S+S ++F + + +V+ Q +R G +KGR +V Sbjct: 1 MPSIKLVTITGESTGELSLSGNVFDVPLHVPAMHQVVVAQLANRRQGTHCTKGRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GGG GP P + KKVR LA+ ALS K Sbjct: 61 GKKPWRQKHTGRARHGSSRSPIWVGGGVTHGPKPRNYRQKVNKKVRRLAICSALSQKIRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +M + ++ TK + F++L + L+I + D N ++ RNIP ++L V Sbjct: 121 AQLMGFEAFSMEKPSTKIMKGLFQSLGVEKPLVIVDHR-DENISMSTRNIPGADVLHVDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + +S A++ LE+ + Sbjct: 180 INVYDLLKHGHVFISAGAVKKLEEVY 205 >gi|254470116|ref|ZP_05083520.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062] gi|211960427|gb|EEA95623.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062] Length = 205 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 105/205 (51%), Positives = 145/205 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ L G+ G I+VS++IF L+P+ ++ RV+RWQ +++ G KS GRSEV T Sbjct: 1 MELEVKTLGGKAAGSITVSDEIFGLEPRIDLIQRVVRWQLAKRQAGTHKSLGRSEVNGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QFRGGGKAFGPV H LPKKVR+L L+HALS K S Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVREHAHDLPKKVRALGLKHALSAKAASG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ ++++ + E KTK L + +L L++AL +DG ++D NF LA RNIP +++LPVQGI Sbjct: 121 NLYIVEDAKAAEAKTKALKEQLGSLGLTSALFVDGAEVDANFGLATRNIPLVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR LVL+K+A+ ALE+RF Sbjct: 181 NVYDILRRDTLVLTKAAVAALEERF 205 >gi|322410859|gb|EFY01767.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 207 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALGIDTKVLVLIEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI A+E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISAIEEVL 206 >gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera] Length = 315 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 106 IPVTNFHNEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 165 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + Sbjct: 166 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 225 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + + + L++DG + +LA +N+ +N+LP G+N Sbjct: 226 LVFDDLEVPSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 285 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL LV+S+ A+ + +R Sbjct: 286 VYSILLHDTLVMSRDAVNKIVER 308 >gi|319899098|ref|YP_004159191.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73] gi|319403062|emb|CBI76617.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73] Length = 206 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 117/206 (56%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE +F L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLMIKTLDGKEAGKVKVSESVFGLIPREDILQRVVRWQLTRRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHGLPKKVRALGLRLALSAKLKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 DLIVVDELNIRDAKTKVLNANFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+EALE+RFK Sbjct: 181 NVYDILRRGKLVLSKEAVEALEERFK 206 >gi|315122817|ref|YP_004063306.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496219|gb|ADR52818.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 207 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 179/207 (86%), Positives = 189/207 (91%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIELSVR+LDG DKGVISVSE IFALKPQQGILARVLRWQSWR+ GCSKSKGRSE+AYT Sbjct: 1 MIELSVRDLDGADKGVISVSEGIFALKPQQGILARVLRWQSWRRSKGCSKSKGRSEIAYT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+KMY QKGTGRARHSSKS QFRGGGKAFGPVP G H LPKK+RSLALRHALSDKF S Sbjct: 61 GAKMYTQKGTGRARHSSKSAPQFRGGGKAFGPVPGNGAHDLPKKIRSLALRHALSDKFSS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 NDI+VID+LVSKE KTKYL RFRAL+LSNALIIDG QLDRNFQLAARNIPNINLL VQG Sbjct: 121 NDILVIDSLVSKELKTKYLAERFRALNLSNALIIDGVQLDRNFQLAARNIPNINLLSVQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVYDILRCSKL+LSKSA+EALE RFK Sbjct: 181 INVYDILRCSKLILSKSAVEALEGRFK 207 >gi|320548054|ref|ZP_08042334.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812] gi|320447296|gb|EFW88059.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812] Length = 207 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 EKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|326203895|ref|ZP_08193757.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782] gi|325985993|gb|EGD46827.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782] Length = 207 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G I + +++F + +L V+ Q KR G +K +SEV Sbjct: 1 MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + +PKKV+ +A++ AL+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I V+D L + KTK +V L + ++ +I + N +ARNIP I V Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLSNLKVDSSALIVIDSKNENIVKSARNIPGIKTAYVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K +++K A+E +E+ + Sbjct: 181 LNVFDILKYDKFIITKDAVEKVEEVY 206 >gi|296875403|ref|ZP_06899477.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis ATCC 15912] gi|312867055|ref|ZP_07727266.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405] gi|322390661|ref|ZP_08064175.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903] gi|296433596|gb|EFH19369.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis ATCC 15912] gi|311097537|gb|EFQ55770.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405] gi|321142634|gb|EFX38098.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903] Length = 207 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|254487620|ref|ZP_05100825.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101] gi|214044489|gb|EEB85127.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101] Length = 205 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGSAGSIDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H L KK R L LRHALS + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHELTKKFRKLGLRHALSSMAKNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID+ S KT L + ++L ALIIDG ++ NF AARNI +++LP G Sbjct: 121 NLVIIDDATSD-GKTSALAKQVKSLGWKRALIIDGASVNENFLQAARNIEGLDILPSVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|319945834|ref|ZP_08020084.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641] gi|319747899|gb|EFW00143.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641] Length = 207 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANITLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|312866536|ref|ZP_07726753.1| 50S ribosomal protein L4 [Streptococcus downei F0415] gi|311097967|gb|EFQ56194.1| 50S ribosomal protein L4 [Streptococcus downei F0415] Length = 207 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + P+KVR LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKFPQKVRRLALKSVLSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ +D L KT +AL + + +++ + + L+ARN+PN+ + + Sbjct: 121 EKLVAVDALSFAAPKTAEFAKVLKALSIDSKVLVVLEEGNEVAALSARNLPNVAVATAKT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIMNADKLLVTKEAISTIEEVL 206 >gi|257067059|ref|YP_003153315.1| 50S ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548] gi|256798939|gb|ACV29594.1| ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548] Length = 207 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHSVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D+L + KTK A++ + + D N + RNI +++ Sbjct: 121 GELIVLDDLKLENNKTKEAAAVLNAVEAGKKAYVVTAENDNNVYRSFRNIEGVDVASASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R +KLV++K AI LE+ F Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206 >gi|257866530|ref|ZP_05646183.1| ribosomal protein L4 [Enterococcus casseliflavus EC30] gi|257872955|ref|ZP_05652608.1| ribosomal protein L4 [Enterococcus casseliflavus EC10] gi|257876134|ref|ZP_05655787.1| ribosomal protein L4 [Enterococcus casseliflavus EC20] gi|325567375|ref|ZP_08144042.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755] gi|257800488|gb|EEV29516.1| ribosomal protein L4 [Enterococcus casseliflavus EC30] gi|257807119|gb|EEV35941.1| ribosomal protein L4 [Enterococcus casseliflavus EC10] gi|257810300|gb|EEV39120.1| ribosomal protein L4 [Enterococcus casseliflavus EC20] gi|325158808|gb|EGC70954.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755] Length = 207 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K S Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + + +++ + L+ARN+P ++++ Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLTIDSKVLVVLESENDFAALSARNLPKVSVVTADN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+V DI+ K++++++A+ +E+ Sbjct: 181 ISVLDIVSNDKMLVTQTALTQIEEVL 206 >gi|256544507|ref|ZP_05471880.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170] gi|256399832|gb|EEU13436.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170] Length = 207 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + + ++ Q KR G +K R+EV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAAEIAETAVYDTVKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMRRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK ++ + + + D + RNI N+ Sbjct: 121 NELIVLDELKLDSYKTKEANEILNNINANKKAYVVIAENDDKVYRSFRNIEGCNVEKANL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR KLV++K AI LE+ F Sbjct: 181 INVYDLLRHDKLVITKDAINKLEEVF 206 >gi|153816251|ref|ZP_01968919.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756] gi|145846434|gb|EDK23352.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756] Length = 206 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK L+++ AL++ + N +++ARNI + Sbjct: 121 NKFIVVDEMNFDEIKTKKFQNVLNNLNVNKALVVL-EDGNTNAEISARNIAGVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 180 INVYDILKYNTVIATKAAVATIEEVY 205 >gi|163868649|ref|YP_001609858.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476] gi|189029491|sp|A9IW26|RL4_BART1 RecName: Full=50S ribosomal protein L4 gi|161018305|emb|CAK01863.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476] Length = 206 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 118/206 (57%), Positives = 154/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K + Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKAK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L K+ KTK LV+ F L +NAL+I G ++D NF AA NIPNI++LP+QGI Sbjct: 121 DLIVVDELAVKDAKTKKLVSHFSKLGFNNALLIGGQEIDINFFRAASNIPNIDVLPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RF+ Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFR 206 >gi|322391200|ref|ZP_08064672.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780] gi|321145953|gb|EFX41342.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|89893218|ref|YP_516705.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51] gi|122483925|sp|Q250N1|RL4_DESHY RecName: Full=50S ribosomal protein L4 gi|89332666|dbj|BAE82261.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G + + E +F ++P ++ + + Q +R G + R EV Sbjct: 1 MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L E KT+ +V +AL++S +I + + +ARNI I V+G Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFMETIERSARNIAGIKTTAVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+L +V++K+A+ E+ Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEEVL 206 >gi|299143193|ref|ZP_07036273.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517678|gb|EFI41417.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 116/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G I ++E+IF + + + V++ +R G +K R+EV Sbjct: 1 MPKIQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P P + PKKVR LALR AL+ K Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D++ + KTK V +A+ ++ D ++AARNIPN+ + Sbjct: 121 NEMIVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGYDEKVKIAARNIPNVKTTMAEN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + LV+++ A+ +E+ F Sbjct: 181 INVYDILKYNSLVITEDALRVIEEVF 206 >gi|325479201|gb|EGC82298.1| 50S ribosomal protein L4 [Anaerococcus prevotii ACS-065-V-Col13] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHTVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+++L + KTK +A++ + I + D + RNI +++ Sbjct: 121 NELIVLEDLNLENAKTKEASQVLKAINAGDKAYIVTAENDNEVYRSFRNIEGVDVSAASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ +KLV++K A+ LE+ F Sbjct: 181 INVYDLVKHNKLVITKDAVAKLEEVF 206 >gi|306825985|ref|ZP_07459321.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431701|gb|EFM34681.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|84685436|ref|ZP_01013334.1| 50S ribosomal protein L4 [Maritimibacter alkaliphilus HTCC2654] gi|84666593|gb|EAQ13065.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2654] Length = 205 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVELDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L L+HALS K Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAQEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+VID + KTK L + L ALIIDG +++ NF AARNI +++LP G Sbjct: 121 AIVVIDTAEAD-GKTKVLAKLVKDLGWKRALIIDGAEVNENFAKAARNIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|325689230|gb|EGD31236.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK115] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206 >gi|307708061|ref|ZP_07644529.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261] gi|307615846|gb|EFN95051.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|307709911|ref|ZP_07646358.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564] gi|307711053|ref|ZP_07647475.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321] gi|322388400|ref|ZP_08062003.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779] gi|307617015|gb|EFN96193.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321] gi|307619282|gb|EFN98411.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564] gi|321140713|gb|EFX36215.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|222152266|ref|YP_002561441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J] gi|254803757|sp|B9DSV1|RL4_STRU0 RecName: Full=50S ribosomal protein L4 gi|222113077|emb|CAR40441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|157149830|ref|YP_001451234.1| 50S ribosomal protein L4 [Streptococcus gordonii str. Challis substr. CH1] gi|262283582|ref|ZP_06061347.1| ribosomal protein L4/L1 family protein [Streptococcus sp. 2_1_36FAA] gi|189042889|sp|A8AZM4|RL4_STRGC RecName: Full=50S ribosomal protein L4 gi|157074624|gb|ABV09307.1| ribosomal protein L4/L1 family [Streptococcus gordonii str. Challis substr. CH1] gi|262260639|gb|EEY79340.1| ribosomal protein L4/L1 family protein [Streptococcus sp. 2_1_36FAA] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206 >gi|317501775|ref|ZP_07959961.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088704|ref|ZP_08337614.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896808|gb|EFV18893.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330407227|gb|EGG86730.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA] Length = 206 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N++G++ I +++ +F ++ + ++ + Q R G K+K RSEV+ Sbjct: 1 MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GGG F PVP + KK + AL+ ALS + Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D + E KTK L+++ AL++ + N +++ARNI + Sbjct: 121 NKFIVVDEMNFDEIKTKKFQNVLNNLNVNKALVVL-EDGNINAEISARNIAGVKTARTNT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL+ + ++ +K+A+ +E+ + Sbjct: 180 INVYDILKYNTVIATKAAVATIEEVY 205 >gi|291544461|emb|CBL17570.1| LSU ribosomal protein L4P [Ruminococcus sp. 18P13] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV ++ G +S+ +F + P + ++ ++ +R G + R+EV+ Sbjct: 1 MAKVSVFDMTGNQVSETELSDAVFGITPNEAVMHAMVVNYLANQRQGTQSTLTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P +AL KKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWYHGGVALGPKPRDYRYALNKKVRRLAMKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L KTK +V +AL++ +I + D+ +A NIP + V Sbjct: 121 NNIIVLDALTVDSYKTKTIVAMLKALNVEGKALIVTAEADKKVIKSAANIPGVKTAAVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++ K+A+ +E+ + Sbjct: 181 LNVYDILNYDKFIVVKNAVGQIEEVY 206 >gi|269792793|ref|YP_003317697.1| 50S ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100428|gb|ACZ19415.1| ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM 6589] Length = 208 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N +GE G + +SE +F + +V+ R+G +K R EV+ Sbjct: 1 MPRVKQVNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG A GP P + KKVR LALR AL+ K Sbjct: 61 GRKPWRQKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V++ + KTK +++ + ++ + D N + +A NIP +L V Sbjct: 121 DNMLVLERFELEAPKTKAMISFLERVQGGKKPLLVIHEPDHNVRKSASNIPGAMVLHVDS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +++++ A+ +E+ F Sbjct: 181 LNVYDILNHDRMIVTAEAVRKIEEVF 206 >gi|311029050|ref|ZP_07707140.1| 50S ribosomal protein L4 [Bacillus sp. m3-13] Length = 207 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 121/206 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G + G + +++ +F ++P +L + Q R G +K KGRSEVA Sbjct: 1 MPKVALYNQAGANVGEVELADAVFGIEPNNSVLFDAIVMQRASLRQGTAKVKGRSEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++ L KTK + + + L+++ +I D N L+ARNIP + ++ V G Sbjct: 121 NELLVLEGLAFDAPKTKEMTSVLKGLEINRKALIVTADADENVALSARNIPGVTVVTVTG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ K++ +K A++ LE+ Sbjct: 181 VNVLDVVNHDKVIFTKDAVQKLEEVL 206 >gi|261264937|gb|ACX55827.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 208 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG RAR + Q+RGGG FGP P + +PKK+R ALR ALS K Sbjct: 61 GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRSALRSALSFKVQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++D + KTK L+ +++ D N +L+ARNIP + + Q Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV D+ ++++++A + +E+ Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEEVL 207 >gi|146297284|ref|YP_001181055.1| ribosomal protein L4/L1e [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166234648|sp|A4XLS9|RL4_CALS8 RecName: Full=50S ribosomal protein L4 gi|145410860|gb|ABP67864.1| LSU ribosomal protein L4P [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 208 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MPKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKVR LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + +TK ++ + L L N +I + + Q + +NIP + L V Sbjct: 121 NNLIVLDKWDMNQYRTKEVIRVLKNLGLENEKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K ++ + A++ +E+ + Sbjct: 181 NLNVFDILKYDKFIILQDAVKKVEEVY 207 >gi|310817007|ref|YP_003964971.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25] gi|308755742|gb|ADO43671.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 128/206 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ NLDG G + +++ IFAL+P+ IL R++RWQ R + G K G+SEV+Y+ Sbjct: 1 MKIDAINLDGGAAGSVELNDAIFALEPRADILHRLVRWQRARAQQGTHKVLGKSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHEHDLTKKFRALGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+ E KT L + L AL+IDG +D F AARNI N+++LP G Sbjct: 121 ELVVIEAATVAEAKTALLAKQLSNLGWKRALVIDGAAVDEGFARAARNIANLDILPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+A+EALE R K Sbjct: 181 NVYDILRSDTLVLTKAAVEALEARLK 206 >gi|303240970|ref|ZP_07327481.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2] gi|302591556|gb|EFL61293.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2] Length = 207 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + +++G+ G I +SE +F + + ++ + + Q KR G +K +SEV Sbjct: 1 MPKVDLYDMNGKVVGDIDLSEAVFGIDVNKEVVHQAVVNQLANKRQGTQSTKTKSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+ GG GP P + LPKKV+ LAL+ LS K Sbjct: 61 GIKPWKQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTLPKKVKRLALKSVLSSKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L + KTK + + L + +I + N + +A NIP + L Sbjct: 121 NEIIVLDKLNFDKIKTKQMAEVLKNLKIDGTAVILIADKNENVERSANNIPGVKTLLANT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYDI++ SKL+++K A+ +E+ + Sbjct: 181 INVYDIVKHSKLIITKDAVSKVEEVY 206 >gi|328958727|ref|YP_004376113.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4] gi|328675051|gb|AEB31097.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4] Length = 207 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 109/207 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K S Sbjct: 61 GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVVS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK + L++ + I + L+ARN+P + ++ Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIVVENDNDFATLSARNLPGVKVVAFDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + V D++ KL+ +++A+ LE+ + Sbjct: 181 VTVLDVVAHEKLIFTQTALTKLEEVLQ 207 >gi|319408764|emb|CBI82421.1| 50S ribosomal protein L4 [Bartonella schoenbuchensis R1] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 118/206 (57%), Positives = 152/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+VA TG Sbjct: 1 MDLVIKTLDGNEAGKLKVSEHIFGLAPREDILQRVVRWQLARRQQGTHQSQGRSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV VH LPKK R+L L ALS K +N Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHVHILPKKSRALGLCLALSVKLKTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++V+D L ++ KTK L F L +NAL+I G +++ NF AA NIPNI++LPVQGI Sbjct: 121 DLIVVDELNVQDAKTKVLAKSFSKLGFNNALLIGGKEINMNFSRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR +KLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRNKLVLSKAAVEALEERFK 206 >gi|261264933|gb|ACX55825.1| 50S ribosomal protein L4 [Staphylococcus epidermidis] Length = 208 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +++ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG RAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++D + KTK L+ +++ D N +L+ARNIP + + Q Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV D+ ++++++A + +E+ Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEEVL 207 >gi|313895056|ref|ZP_07828613.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975951|gb|EFR41409.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str. F0430] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ + G I +S+D F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHKQVGEIDLSDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK V + + N + NIP + + G Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAITAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K A+ +E+ F Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206 >gi|125716986|ref|YP_001034119.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK36] gi|323350941|ref|ZP_08086599.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66] gi|166199916|sp|A3CK64|RL4_STRSV RecName: Full=50S ribosomal protein L4 gi|125496903|gb|ABN43569.1| 50S ribosomal protein L4, putative [Streptococcus sanguinis SK36] gi|322122923|gb|EFX94629.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66] gi|324991816|gb|EGC23741.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK405] gi|324996294|gb|EGC28202.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK678] gi|325686406|gb|EGD28436.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK72] gi|325695809|gb|EGD37706.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK150] gi|327463722|gb|EGF10038.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1057] gi|327467336|gb|EGF12836.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK330] gi|327471741|gb|EGF17182.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK408] gi|327490462|gb|EGF22244.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1058] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206 >gi|163791667|ref|ZP_02186062.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7] gi|159873046|gb|EDP67155.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 110/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K S Sbjct: 61 GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVIS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK + L++ + I + L+ARN+P + ++ Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIVVENDNDFATLSARNLPGVKVVAFDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + V D++ KL+L+++A+ LE+ + Sbjct: 181 VTVLDVVAHEKLILTQTALTKLEEVLQ 207 >gi|21909577|ref|NP_663845.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315] gi|46396643|sp|Q8K8X3|RL4_STRP3 RecName: Full=50S ribosomal protein L4 gi|21903758|gb|AAM78648.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206 >gi|324990001|gb|EGC21942.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK353] gi|325697977|gb|EGD39860.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK160] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDTVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206 >gi|328945216|gb|EGG39370.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1087] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT V AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFVKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206 >gi|222529729|ref|YP_002573611.1| 50S ribosomal protein L4 [Caldicellulosiruptor bescii DSM 6725] gi|254803711|sp|B9MKI0|RL4_ANATD RecName: Full=50S ribosomal protein L4 gi|222456576|gb|ACM60838.1| ribosomal protein L4/L1e [Caldicellulosiruptor bescii DSM 6725] Length = 208 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK ++ + L L N +I + + Q + +NIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|312115688|ref|YP_004013284.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100] gi|311220817|gb|ADP72185.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LD + G + + + +FAL+P+ IL R++R+Q +++ G K+K RSEV Sbjct: 1 MKAEVITLDASNAGSVELDDAVFALEPRTDILQRMVRYQLSKRQAGTHKAKARSEVNGPN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG+ARH + QFRGGG+ GPVP H LPKKVR+LAL+HALS K S+ Sbjct: 61 KKIYKQKGTGQARHGNDKPPQFRGGGRTAGPVPRSHAHDLPKKVRALALKHALSVKAKSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D E KT L +F L LSNALIIDG L NF LAARNIPN+++LPVQGI Sbjct: 121 ALVVLDKAEVTEAKTAQLRGKFAGLGLSNALIIDGAVLQDNFALAARNIPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A+EALE+RFK Sbjct: 181 NVYDILRREKLVLTRAALEALEERFK 206 >gi|322386353|ref|ZP_08059983.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100] gi|321269577|gb|EFX52507.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|313889542|ref|ZP_07823187.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026] gi|313122051|gb|EFR45145.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026] Length = 207 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|329117498|ref|ZP_08246215.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020] gi|326907903|gb|EGE54817.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 EKFVAVESLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|126736643|ref|ZP_01752383.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2] gi|126713956|gb|EBA10827.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2] Length = 206 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 131/205 (63%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ LDG+ G + ++++IF L+P++ IL RV+RWQ + G GRSEV+Y+ Sbjct: 1 MKADAIKLDGKKAGSVELNDEIFGLEPRKDILHRVVRWQRNKAMQGTHDVLGRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FRGGG GP P H LPKK R L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSRGAPIFRGGGTYKGPTPRSHAHDLPKKFRKLGLKHALSAKVAAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D++ K+ KT L + +L ALIIDG +++ +F+ AA NI IN+LP QG Sbjct: 121 ELVIVDDINVKDSKTSALAKQLGSLGWKRALIIDGSEVNADFKKAAANITTINVLPSQGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR LVL+K+ +EALE R Sbjct: 181 NVYDILRSDTLVLTKAGVEALEARL 205 >gi|146317732|ref|YP_001197444.1| 50S ribosomal protein L4 [Streptococcus suis 05ZYH33] gi|146319922|ref|YP_001199633.1| 50S ribosomal protein L4 [Streptococcus suis 98HAH33] gi|253750988|ref|YP_003024129.1| 50S ribosomal protein L4 [Streptococcus suis SC84] gi|253752888|ref|YP_003026028.1| 50S ribosomal protein L4 [Streptococcus suis P1/7] gi|253754713|ref|YP_003027853.1| 50S ribosomal protein L4 [Streptococcus suis BM407] gi|330831921|ref|YP_004400746.1| 50S ribosomal protein L4 [Streptococcus suis ST3] gi|166199915|sp|A4VYP4|RL4_STRS2 RecName: Full=50S ribosomal protein L4 gi|166199917|sp|A4VSF5|RL4_STRSY RecName: Full=50S ribosomal protein L4 gi|145688538|gb|ABP89044.1| Ribosomal protein L4 [Streptococcus suis 05ZYH33] gi|145690728|gb|ABP91233.1| Ribosomal protein L4 [Streptococcus suis 98HAH33] gi|251815277|emb|CAZ50843.1| 50S ribosomal protein L4 [Streptococcus suis SC84] gi|251817177|emb|CAZ54899.1| 50S ribosomal protein L4 [Streptococcus suis BM407] gi|251819133|emb|CAR44224.1| 50S ribosomal protein L4 [Streptococcus suis P1/7] gi|292557532|gb|ADE30533.1| ribosomal protein L4 [Streptococcus suis GZ1] gi|329306144|gb|AEB80560.1| 50S ribosomal protein L4 [Streptococcus suis ST3] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +++L KT AL + + +++ + + L+ARNIP + + Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANADKLLVTQAAISKIEEVL 206 >gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor] gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor] Length = 333 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 126 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 185 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 186 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 245 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R + D L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 246 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 305 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV+S++AI + +R Sbjct: 306 SILQHDTLVMSRAAINRIVER 326 >gi|227501135|ref|ZP_03931184.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098] gi|227216720|gb|EEI82121.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + ++E +F + + + V++ Q KR G +K RSEV Sbjct: 1 MPKVDILNIKGENVGSLELNETLFNTEISEHAVYEVVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKLND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L + KTK V A++ + + D + RNI +++ Sbjct: 121 NELVVLDSLSLENAKTKEAVKVLEAVNAGKKAYVVTAENDTLVYRSFRNIEGVDVAAASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R +KLV++K AI LE+ F Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206 >gi|15674288|ref|NP_268461.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS] gi|19745242|ref|NP_606378.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232] gi|28894955|ref|NP_801305.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1] gi|50913440|ref|YP_059412.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10394] gi|71902710|ref|YP_279513.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS6180] gi|71909859|ref|YP_281409.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS5005] gi|94987676|ref|YP_595777.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS9429] gi|94989556|ref|YP_597656.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10270] gi|139472928|ref|YP_001127643.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo] gi|251781516|ref|YP_002995817.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306828259|ref|ZP_07461519.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC 10782] gi|46396575|sp|P60831|RL4_STRP8 RecName: Full=50S ribosomal protein L4 gi|73917536|sp|Q5XED4|RL4_STRP6 RecName: Full=50S ribosomal protein L4 gi|76363882|sp|P0C0D5|RL4_STRPY RecName: Full=50S ribosomal protein L4 gi|81171140|sp|P0C0D6|RL4_STRP1 RecName: Full=50S ribosomal protein L4 gi|109893643|sp|Q48VU8|RL4_STRPM RecName: Full=50S ribosomal protein L4 gi|166199912|sp|Q1JP16|RL4_STRPC RecName: Full=50S ribosomal protein L4 gi|166199913|sp|Q1JJ61|RL4_STRPD RecName: Full=50S ribosomal protein L4 gi|166199914|sp|A2RC15|RL4_STRPG RecName: Full=50S ribosomal protein L4 gi|13621368|gb|AAK33183.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS] gi|19747336|gb|AAL96877.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232] gi|28475247|emb|CAD67589.1| ribosomal protein L4 [Streptococcus pyogenes] gi|28810200|dbj|BAC63138.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1] gi|50902514|gb|AAT86229.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS10394] gi|71801805|gb|AAX71158.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS6180] gi|71852641|gb|AAZ50664.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS5005] gi|94541184|gb|ABF31233.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS9429] gi|94543064|gb|ABF33112.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10270] gi|134271174|emb|CAM29387.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo] gi|242390144|dbj|BAH80603.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304429570|gb|EFM32619.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC 10782] gi|323126312|gb|ADX23609.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206 >gi|329850208|ref|ZP_08265053.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19] gi|328840523|gb|EGF90094.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19] Length = 210 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 99/206 (48%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G + +S+ +F + + IL RV+ WQ ++R G K + R+E + T Sbjct: 1 MKLDVITLDASAAGSVELSDLVFGISDIRADILHRVVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKG+G ARH S+ QF GG +AFGPV LPKKVR+L LRHALS K Sbjct: 61 GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLPKKVRALGLRHALSSKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D V KT L F L L+NAL I G ++D NF LA+RNIPNI++LP G Sbjct: 121 GALIVLDQAVVASPKTSALKASFEKLGLNNALFITGAEVDTNFALASRNIPNIDVLPTAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+ +A+EA+E RF Sbjct: 181 LNVYDILRRHKLVLTTAAVEAIEARF 206 >gi|293364346|ref|ZP_06611072.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037] gi|307702687|ref|ZP_07639639.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037] gi|307704066|ref|ZP_07640995.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597] gi|291317192|gb|EFE57619.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037] gi|307622356|gb|EFO01364.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597] gi|307623803|gb|EFO02788.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|289168731|ref|YP_003447000.1| 50S ribosomal protein L4 [Streptococcus mitis B6] gi|288908298|emb|CBJ23140.1| 50S ribosomal protein L4 [Streptococcus mitis B6] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRNYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|312622046|ref|YP_004023659.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002] gi|312202513|gb|ADQ45840.1| ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002] Length = 208 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ G I +++ IF + +L + + +R G +K R+EV Sbjct: 1 MAKVPVYNIEGQQIGEIELNDSIFNVPINNHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG F P LPKKV+ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIELPKKVKRLALKCALSSKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+D + KTK ++ + L L N +I + + Q + +NIP + L V Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL+ K V+ + A++ +E+ + Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207 >gi|259047554|ref|ZP_05737955.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175] gi|259035745|gb|EEW37000.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175] Length = 207 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 110/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I ++ DIF ++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVTLFKQDGTTNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V++ L KTK L++ +++ + L+ARNIPN+ ++ Sbjct: 121 NKLVVVEALQFDAPKTKEFAQVLSNLNVDTKVLVVVESSNDFALLSARNIPNVTIVDETD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + V D++ KL+ +K+A+ +E+ + Sbjct: 181 VTVLDVVNNDKLLFTKAALSKVEEGLQ 207 >gi|257870518|ref|ZP_05650171.1| ribosomal protein L4 [Enterococcus gallinarum EG2] gi|257804682|gb|EEV33504.1| ribosomal protein L4 [Enterococcus gallinarum EG2] Length = 207 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNETVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K S Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + + +++ + L+ARN+P+++++ Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLTIDSKVLVVLETENDFAALSARNLPSVSVVTADN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ K++++++A+ +E+ Sbjct: 181 VSVLDVVSADKMLVTQTALTQIEEVL 206 >gi|319404424|emb|CBI78027.1| 50S ribosomal protein L4 [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 116/206 (56%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHNLPKKVRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 NLIIVDELSIRDAKTKMLNMNFSKLGFNNALLIGGKEVDVNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206 >gi|304315941|ref|YP_003851086.1| ribosomal protein L4/L1e [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777443|gb|ADL68002.1| ribosomal protein L4/L1e [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++GE G + +S+++F ++ ++ V+ +R G +K R EV Sbjct: 1 MPKVAVYNINGEQIGEMELSDNVFGVEVNVPVMHEVVLNYLASQRQGTHSTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + +PKKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+VID++ E KTK + + ++ NALI+ + +N L++RNIPN+ + Sbjct: 121 NEIIVIDDINIDEPKTKKVADMLKKFNVKNALIVI-PEDKKNVVLSSRNIPNVKAVYANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ + +++K A+ +E+ + Sbjct: 180 LNTYDVLKYDRFIITKDAVNKVEEVY 205 >gi|219666491|ref|YP_002456926.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DCB-2] gi|254803731|sp|B8G1W7|RL4_DESHD RecName: Full=50S ribosomal protein L4 gi|219536751|gb|ACL18490.1| ribosomal protein L4/L1e [Desulfitobacterium hafniense DCB-2] Length = 207 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ G G + + E +F ++P ++ + + Q +R G + R EV Sbjct: 1 MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +LPKKVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L E KT+ +V +AL++ +I + +ARNI I V+G Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVGKKALIVTDEFMETIDRSARNIAGIKTTAVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+L +V++K+A+ E+ Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEEVL 206 >gi|269798549|ref|YP_003312449.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008] gi|282849865|ref|ZP_06259248.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC 17745] gi|294792795|ref|ZP_06757942.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27] gi|294794549|ref|ZP_06759685.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44] gi|313892995|ref|ZP_07826572.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str. F0412] gi|269095178|gb|ACZ25169.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008] gi|282580302|gb|EFB85702.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC 17745] gi|294454879|gb|EFG23252.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44] gi|294456694|gb|EFG25057.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27] gi|313442348|gb|EFR60763.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str. F0412] Length = 207 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P A+P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARAGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ V++ + KTK ++ + ++ +A ++ + D N + +ARNI + L +G Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L KL ++K A+ +E+ Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEEVL 206 >gi|182678338|ref|YP_001832484.1| 50S ribosomal protein L4 [Beijerinckia indica subsp. indica ATCC 9039] gi|226730620|sp|B2IK63|RL4_BEII9 RecName: Full=50S ribosomal protein L4 gi|182634221|gb|ACB94995.1| ribosomal protein L4/L1e [Beijerinckia indica subsp. indica ATCC 9039] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +++GE G I + + IF L+P+ ++AR++R+Q ++R G +S GR+++ TG Sbjct: 1 MKIDITSVNGETAGSIDLDDAIFGLEPRVDLIARMIRYQLAKRRAGTHQSLGRADIHRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH S QFRGGGKAFGPV H LPKK+R+LAL+HALS K Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGKAFGPVARSHEHDLPKKIRALALKHALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I++ ++ E KTK L F + L+NALIIDG +L+ NF LAARNIP I++LPVQGI Sbjct: 121 GIIIWNDAKIPEAKTKGLKANFEKIGLTNALIIDGAELETNFSLAARNIPQIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R KLVL+ +AI ALE RFK Sbjct: 181 NVYDIVRRDKLVLTTAAINALEARFK 206 >gi|323706451|ref|ZP_08118012.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum LX-11] gi|323534171|gb|EGB23961.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum LX-11] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N++ E G I +S+++F ++ ++ + +R G +K R EV Sbjct: 1 MPKVAVYNINAEQIGEIELSDNVFGVEVNVPVMHEAVLNYLANQRQGTHSTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG FGP P + +PKKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWVKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+VID++ E KTK + + D+ NALI+ N L++RNIPN+ + Sbjct: 121 NEIIVIDDINIDEPKTKKIAEMLKKFDVKNALIVI-PDGKENVILSSRNIPNVKAVFANS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ + +++K A+ +E+ + Sbjct: 180 LNTYDVLKYDRFIITKDAVNKVEEVY 205 >gi|209558628|ref|YP_002285100.1| 50S ribosomal protein L4 [Streptococcus pyogenes NZ131] gi|226731433|sp|B5XJ37|RL4_STRPZ RecName: Full=50S ribosomal protein L4 gi|209539829|gb|ACI60405.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NZ131] Length = 207 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206 >gi|291290889|ref|NP_001167475.1| mitochondrial ribosomal protein L4 [Xenopus laevis] gi|161611723|gb|AAI55897.1| Unknown (protein for MGC:181787) [Xenopus laevis] Length = 298 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+++ D + G++ + D+F + P+ IL +V+ WQ KRI +K K R+EV G K Sbjct: 73 SLKHPDDQQLGLVHLHPDVFTVPPRIDILHQVITWQRNFKRISYAKVKTRAEVRGGGKKP 132 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+GR+R S +RGGG A GP P + +P K+R L L+ AL+ K +D+ Sbjct: 133 RQQKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQDDL 192 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181 +ID+L +YL+ ++++I L N A N+ IN++P G+ Sbjct: 193 HIIDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPATGL 252 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ +VL+ +A++ LE++ Sbjct: 253 NVFSMLKHDTVVLTVAAVDFLEEKL 277 >gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] gi|227555854|ref|ZP_03985901.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22] gi|229546963|ref|ZP_04435688.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322] gi|229550552|ref|ZP_04439277.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200] gi|255971710|ref|ZP_05422296.1| 50S ribosomal protein L4 [Enterococcus faecalis T1] gi|255974710|ref|ZP_05425296.1| 50S ribosomal protein L4 [Enterococcus faecalis T2] gi|256855164|ref|ZP_05560525.1| ribosomal protein L4 [Enterococcus faecalis T8] gi|256956861|ref|ZP_05561032.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5] gi|256960668|ref|ZP_05564839.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96] gi|256964133|ref|ZP_05568304.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704] gi|257078531|ref|ZP_05572892.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1] gi|257081498|ref|ZP_05575859.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol] gi|257084146|ref|ZP_05578507.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1] gi|257087973|ref|ZP_05582334.1| 50S ribosomal protein L4 [Enterococcus faecalis D6] gi|257088650|ref|ZP_05583011.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188] gi|257417577|ref|ZP_05594571.1| 50S ribosomal protein L4 [Enterococcus faecalis AR01/DG] gi|257418698|ref|ZP_05595692.1| 50S ribosomal protein L4 [Enterococcus faecalis T11] gi|257421501|ref|ZP_05598491.1| 50S ribosomal protein L4 [Enterococcus faecalis X98] gi|293382757|ref|ZP_06628682.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712] gi|293388060|ref|ZP_06632588.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613] gi|294781052|ref|ZP_06746403.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis PC1.1] gi|300861819|ref|ZP_07107899.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11] gi|307269088|ref|ZP_07550449.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4248] gi|307274172|ref|ZP_07555380.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0855] gi|307276397|ref|ZP_07557520.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2134] gi|307278607|ref|ZP_07559677.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0860] gi|307287013|ref|ZP_07567088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0109] gi|307291646|ref|ZP_07571521.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0411] gi|312901121|ref|ZP_07760409.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0470] gi|312904683|ref|ZP_07763838.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0635] gi|312908652|ref|ZP_07767594.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 512] gi|312909200|ref|ZP_07768057.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 516] gi|312952608|ref|ZP_07771472.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0102] gi|227072541|gb|EEI10504.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] gi|227175021|gb|EEI55993.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22] gi|229304271|gb|EEN70267.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200] gi|229307891|gb|EEN73878.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322] gi|255962728|gb|EET95204.1| 50S ribosomal protein L4 [Enterococcus faecalis T1] gi|255967582|gb|EET98204.1| 50S ribosomal protein L4 [Enterococcus faecalis T2] gi|256709677|gb|EEU24724.1| ribosomal protein L4 [Enterococcus faecalis T8] gi|256947357|gb|EEU63989.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5] gi|256951164|gb|EEU67796.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96] gi|256954629|gb|EEU71261.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704] gi|256986561|gb|EEU73863.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1] gi|256989528|gb|EEU76830.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol] gi|256992176|gb|EEU79478.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1] gi|256996003|gb|EEU83305.1| 50S ribosomal protein L4 [Enterococcus faecalis D6] gi|256997462|gb|EEU83982.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188] gi|257159405|gb|EEU89365.1| 50S ribosomal protein L4 [Enterococcus faecalis ARO1/DG] gi|257160526|gb|EEU90486.1| 50S ribosomal protein L4 [Enterococcus faecalis T11] gi|257163325|gb|EEU93285.1| 50S ribosomal protein L4 [Enterococcus faecalis X98] gi|291079917|gb|EFE17281.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712] gi|291082511|gb|EFE19474.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613] gi|294451855|gb|EFG20306.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis PC1.1] gi|295112507|emb|CBL31144.1| Ribosomal protein L4 [Enterococcus sp. 7L76] gi|300848344|gb|EFK76101.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11] gi|306497265|gb|EFM66807.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0411] gi|306501959|gb|EFM71248.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0109] gi|306504667|gb|EFM73867.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0860] gi|306506877|gb|EFM76024.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2134] gi|306509134|gb|EFM78196.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0855] gi|306514568|gb|EFM83122.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4248] gi|310625439|gb|EFQ08722.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 512] gi|310629396|gb|EFQ12679.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0102] gi|310632035|gb|EFQ15318.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0635] gi|311290442|gb|EFQ68998.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO 516] gi|311291793|gb|EFQ70349.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0470] gi|315026834|gb|EFT38766.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2137] gi|315028874|gb|EFT40806.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4000] gi|315031140|gb|EFT43072.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0017] gi|315036014|gb|EFT47946.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0027] gi|315145337|gb|EFT89353.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX2141] gi|315147170|gb|EFT91186.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX4244] gi|315151072|gb|EFT95088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0012] gi|315153608|gb|EFT97624.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0031] gi|315156212|gb|EFU00229.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0043] gi|315158643|gb|EFU02660.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0312] gi|315160729|gb|EFU04746.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0645] gi|315165900|gb|EFU09917.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1302] gi|315168101|gb|EFU12118.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1341] gi|315171459|gb|EFU15476.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1342] gi|315172693|gb|EFU16710.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX1346] gi|315573515|gb|EFU85706.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0309B] gi|315579327|gb|EFU91518.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0630] gi|315582137|gb|EFU94328.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis TX0309A] gi|323479423|gb|ADX78862.1| 50S ribosomal protein L4 [Enterococcus faecalis 62] gi|327534005|gb|AEA92839.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis OG1RF] Length = 207 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + +++ + L+ARN+PN++++ Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206 >gi|15900146|ref|NP_344750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TIGR4] gi|15902233|ref|NP_357783.1| 50S ribosomal protein L4 [Streptococcus pneumoniae R6] gi|111658800|ref|ZP_01409431.1| hypothetical protein SpneT_02000097 [Streptococcus pneumoniae TIGR4] gi|116515366|ref|YP_815713.1| 50S ribosomal protein L4 [Streptococcus pneumoniae D39] gi|148987946|ref|ZP_01819409.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73] gi|148992786|ref|ZP_01822429.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68] gi|148996631|ref|ZP_01824349.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70] gi|149001685|ref|ZP_01826658.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69] gi|149005959|ref|ZP_01829688.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74] gi|149011078|ref|ZP_01832383.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75] gi|149017898|ref|ZP_01834357.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72] gi|168483846|ref|ZP_02708798.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC1873-00] gi|168489687|ref|ZP_02713886.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195] gi|168492163|ref|ZP_02716306.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC0288-04] gi|168493903|ref|ZP_02718046.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC3059-06] gi|168576363|ref|ZP_02722246.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016] gi|169833141|ref|YP_001693742.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Hungary19A-6] gi|182683189|ref|YP_001834936.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14] gi|225853816|ref|YP_002735328.1| 50S ribosomal protein L4 [Streptococcus pneumoniae JJA] gi|225855975|ref|YP_002737486.1| 50S ribosomal protein L4 [Streptococcus pneumoniae P1031] gi|225858064|ref|YP_002739574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 70585] gi|225860252|ref|YP_002741761.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Taiwan19F-14] gi|237649722|ref|ZP_04523974.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974] gi|298230367|ref|ZP_06964048.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255988|ref|ZP_06979574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502024|ref|YP_003723964.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A] gi|303255094|ref|ZP_07341170.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455] gi|303259262|ref|ZP_07345240.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293] gi|303261017|ref|ZP_07346966.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292] gi|303263345|ref|ZP_07349268.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397] gi|303265510|ref|ZP_07351410.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457] gi|303267932|ref|ZP_07353734.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458] gi|307066887|ref|YP_003875853.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200] gi|307126430|ref|YP_003878461.1| 50S ribosomal protein L4/L1 family [Streptococcus pneumoniae 670-6B] gi|46396654|sp|Q97SV4|RL4_STRPN RecName: Full=50S ribosomal protein L4 gi|46577255|sp|Q8CWV7|RL4_STRR6 RecName: Full=50S ribosomal protein L4 gi|122279401|sp|Q04MN5|RL4_STRP2 RecName: Full=50S ribosomal protein L4 gi|226730731|sp|B1I8J9|RL4_STRPI RecName: Full=50S ribosomal protein L4 gi|226730739|sp|B2IS41|RL4_STRPS RecName: Full=50S ribosomal protein L4 gi|254803755|sp|C1CAL3|RL4_STRP7 RecName: Full=50S ribosomal protein L4 gi|254803758|sp|C1CC07|RL4_STRZJ RecName: Full=50S ribosomal protein L4 gi|254803759|sp|C1CI98|RL4_STRZP RecName: Full=50S ribosomal protein L4 gi|254803760|sp|C1CP89|RL4_STRZT RecName: Full=50S ribosomal protein L4 gi|14971678|gb|AAK74390.1| ribosomal protein L4 [Streptococcus pneumoniae TIGR4] gi|15457733|gb|AAK98993.1| 50S Ribosomal protein L4 [Streptococcus pneumoniae R6] gi|116075942|gb|ABJ53662.1| ribosomal protein L4 [Streptococcus pneumoniae D39] gi|147757206|gb|EDK64245.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70] gi|147760143|gb|EDK67132.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69] gi|147762315|gb|EDK69276.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74] gi|147764714|gb|EDK71644.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75] gi|147926410|gb|EDK77483.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73] gi|147928512|gb|EDK79527.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68] gi|147931462|gb|EDK82440.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72] gi|168995643|gb|ACA36255.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae Hungary19A-6] gi|172042817|gb|EDT50863.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC1873-00] gi|182628523|gb|ACB89471.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14] gi|183571793|gb|EDT92321.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195] gi|183573611|gb|EDT94139.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC0288-04] gi|183576018|gb|EDT96546.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae CDC3059-06] gi|183577871|gb|EDT98399.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016] gi|225720617|gb|ACO16471.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 70585] gi|225723287|gb|ACO19140.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae JJA] gi|225725631|gb|ACO21483.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae P1031] gi|225728067|gb|ACO23918.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae Taiwan19F-14] gi|298237619|gb|ADI68750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A] gi|301793483|emb|CBW35856.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV104] gi|301801154|emb|CBW33827.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV200] gi|302597924|gb|EFL64994.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455] gi|302637854|gb|EFL68340.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292] gi|302639680|gb|EFL70137.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293] gi|302642628|gb|EFL72973.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458] gi|302644950|gb|EFL75197.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457] gi|302647118|gb|EFL77342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397] gi|306408424|gb|ADM83851.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200] gi|306483492|gb|ADM90361.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 670-6B] gi|327390629|gb|EGE88969.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA04375] gi|332075875|gb|EGI86342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17570] gi|332076656|gb|EGI87118.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17545] gi|332077511|gb|EGI87972.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA41301] Length = 207 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +S+ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|319405897|emb|CBI79529.1| 50S ribosomal protein L4 [Bartonella sp. AR 15-3] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 117/206 (56%), Positives = 151/206 (73%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G S+GRS+V+ TG Sbjct: 1 MDLVVKTLDGKEAGKLKVSENIFGLTPREDILQRVIRWQLARRQKGTHPSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H+LPKKVR+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRCHAHSLPKKVRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 SLIVVDKLSIRDAKTKALNESFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRGKLVLSKEAVETLEERFK 206 >gi|295425651|ref|ZP_06818338.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus DSM 11664] gi|295064667|gb|EFG55588.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus DSM 11664] Length = 205 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q +R G SK K RS V Sbjct: 1 MANLKVIDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGQRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK V+ +L + + +++ D+N QL+A+N+P + ++PV G Sbjct: 121 KNLIVLDKLTMSAPKTKEFVSILDSLKVESKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYDKLILTQDAVKKIEEVL 204 >gi|294463048|gb|ADE77062.1| unknown [Picea sitchensis] Length = 323 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 113/204 (55%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V N+ EDKG+I ++ D+F + ++ I+ RV+RWQ ++R G +K SEV+ TG Sbjct: 113 TLRVTNMRNEDKGMIVLAGDVFDVPIRKDIIHRVVRWQLAKRRQGTHSTKTISEVSGTGR 172 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTG+ARH + QFR G GP P L KKVR L L+ ALS + Sbjct: 173 KPWPQKGTGKARHGTLRGPQFRHGATMHGPKPRSHAIKLQKKVRRLGLKIALSARAAEGK 232 Query: 123 IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +MV D KTK + L + L+++G +++ LA +N+ N+LP G+ Sbjct: 233 LMVFDTFDLTTHKTKEVAKYVSQLENCKKILLVEGGPVNKKLGLATQNLHYANVLPSIGL 292 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 NVY IL+ LV++ A+ + +R Sbjct: 293 NVYSILQHDTLVMTADAVNRIVER 316 >gi|238018624|ref|ZP_04599050.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748] gi|303230124|ref|ZP_07316893.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a] gi|303231196|ref|ZP_07317934.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6] gi|237865095|gb|EEP66385.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748] gi|302514103|gb|EFL56107.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6] gi|302515185|gb|EFL57158.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a] Length = 207 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ N G G I +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P A+P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARSGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ V++ + KTK ++ + ++ +A ++ + D N + +ARNI + L +G Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L KL ++K A+ +E+ Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEEVL 206 >gi|22536244|ref|NP_687095.1| 50S ribosomal protein L4 [Streptococcus agalactiae 2603V/R] gi|25010134|ref|NP_734529.1| 50S ribosomal protein L4 [Streptococcus agalactiae NEM316] gi|76787912|ref|YP_328785.1| 50S ribosomal protein L4 [Streptococcus agalactiae A909] gi|76798215|ref|ZP_00780465.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21] gi|77406989|ref|ZP_00784004.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B] gi|77412287|ref|ZP_00788603.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111] gi|77414565|ref|ZP_00790708.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515] gi|46577261|sp|Q8E2D0|RL4_STRA5 RecName: Full=50S ribosomal protein L4 gi|46577263|sp|Q8E7T7|RL4_STRA3 RecName: Full=50S ribosomal protein L4 gi|109893642|sp|Q3K3W8|RL4_STRA1 RecName: Full=50S ribosomal protein L4 gi|22533064|gb|AAM98967.1|AE014194_12 ribosomal protein L4 [Streptococcus agalactiae 2603V/R] gi|23094485|emb|CAD45704.1| ribosomal protein L4 [Streptococcus agalactiae NEM316] gi|76562969|gb|ABA45553.1| ribosomal protein L4 [Streptococcus agalactiae A909] gi|76586424|gb|EAO62932.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21] gi|77159363|gb|EAO70531.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515] gi|77161677|gb|EAO72672.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111] gi|77174394|gb|EAO77248.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B] gi|319743994|gb|EFV96374.1| 50S ribosomal protein L4 [Streptococcus agalactiae ATCC 13813] Length = 207 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++NL KT + AL + + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVENLSFAAPKTAEFASVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEGVL 206 >gi|148983608|ref|ZP_01816927.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71] gi|194397434|ref|YP_002036911.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54] gi|221231114|ref|YP_002510266.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669] gi|270292001|ref|ZP_06198216.1| ribosomal protein L4 [Streptococcus sp. M143] gi|306828784|ref|ZP_07461976.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC 6249] gi|315612333|ref|ZP_07887246.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis ATCC 49296] gi|322375038|ref|ZP_08049552.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300] gi|322377229|ref|ZP_08051721.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334] gi|331267135|ref|YP_004326765.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5] gi|226730730|sp|B5E6F6|RL4_STRP4 RecName: Full=50S ribosomal protein L4 gi|254803756|sp|B8ZKF8|RL4_STRPJ RecName: Full=50S ribosomal protein L4 gi|74267363|dbj|BAE44179.1| ribosomal protein L4 [Streptococcus pneumoniae] gi|147923755|gb|EDK74867.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71] gi|194357101|gb|ACF55549.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54] gi|220673574|emb|CAR68060.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669] gi|270279529|gb|EFA25371.1| ribosomal protein L4 [Streptococcus sp. M143] gi|301799359|emb|CBW31894.1| 50S ribosomal protein L4 [Streptococcus pneumoniae OXC141] gi|304428962|gb|EFM32050.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC 6249] gi|315315314|gb|EFU63353.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis ATCC 49296] gi|321280538|gb|EFX57577.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300] gi|321281942|gb|EFX58950.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334] gi|326683807|emb|CBZ01425.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5] Length = 207 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|240850834|ref|YP_002972234.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup] gi|240267957|gb|ACS51545.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 117/206 (56%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLVIKTLDGNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K + Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKAK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D++++D L K+ KTK LV+ F L +NAL+I G ++D NF A NIPNI++LP+QGI Sbjct: 121 DLIIVDELTVKDAKTKMLVSHFSKLGFNNALLIGGKEIDINFFRAVSNIPNIDILPIQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK+A+EALE+RFK Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206 >gi|150020846|ref|YP_001306200.1| 50S ribosomal protein L4 [Thermosipho melanesiensis BI429] gi|166199920|sp|A6LLL4|RL4_THEM4 RecName: Full=50S ribosomal protein L4 gi|149793367|gb|ABR30815.1| ribosomal protein L4/L1e [Thermosipho melanesiensis BI429] Length = 221 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 122/220 (55%), Gaps = 14/220 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE+ G + + E++FA++P Q ++ R + Q R G + +K R EV+ Sbjct: 1 MAKVDLFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS + Sbjct: 61 GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLD---RNFQLAARNIPNINLL 176 N+++V+D++ ++ +TK L + L L N ++I + + N +++ RNIP + +L Sbjct: 121 NNLVVVDDIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVL 180 Query: 177 PV----------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL KLVL + ++ +E+ Sbjct: 181 IADNPGVDRVNIDGLNVYDILNHDKLVLLQGTVQKIEEVL 220 >gi|260432430|ref|ZP_05786401.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis ITI-1157] gi|260416258|gb|EEX09517.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis ITI-1157] Length = 205 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG+ G I + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGKKAGDIELDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLPKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID E KT L + L AL+IDG ++ F AARNI +++LP G Sbjct: 121 ELVVIDA-AEAEGKTAALAKQVANLGWKRALVIDGATVNEGFARAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|119383512|ref|YP_914568.1| 50S ribosomal protein L4 [Paracoccus denitrificans PD1222] gi|166234698|sp|A1B028|RL4_PARDP RecName: Full=50S ribosomal protein L4 gi|119373279|gb|ABL68872.1| LSU ribosomal protein L4P [Paracoccus denitrificans PD1222] Length = 206 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 127/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LD G I +S+DIF L+P+ +L RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKLDVITLDAGKAGDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D+L E KT + + L+IDG +++ NF AARN+ +++LP G Sbjct: 121 ELVVVDSLNIAEAKTAAVAKAVKENGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+++ +EALE R K Sbjct: 181 NVYDILRRDTLVLTRAGVEALEARLK 206 >gi|293402502|ref|ZP_06646637.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304016|gb|EFE45270.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 209 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQAGKELHEITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLD-RNFQLAARNIPNINLLPV 178 N + V+D + KTK L+ L + D N L+ RNIP++ +L Sbjct: 121 NAMSVVDKFELEAPKTKAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRNIPSMMMLTA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208 >gi|313897239|ref|ZP_07830783.1| 50S ribosomal protein L4 [Clostridium sp. HGF2] gi|312957960|gb|EFR39584.1| 50S ribosomal protein L4 [Clostridium sp. HGF2] Length = 209 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQTGKELNEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ ALS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178 N + V+D + KTK ++ + + + N L+ RNIP + +L Sbjct: 121 NAMSVVDKFELEAPKTKAFNQIIADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208 >gi|260584417|ref|ZP_05852164.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633] gi|260157935|gb|EEW93004.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633] Length = 207 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 110/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G I ++ DIF ++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVTLYKQDGTKNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ L KTK L + +++ + QLAARNIPN+ ++ Sbjct: 121 QKLVVVEALQFDAPKTKEFAQVLANLKVDTKVLVVVESSNEFAQLAARNIPNVTVVDETQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + V D++ KLVL+++A+ +E+ + Sbjct: 181 VTVLDVVNNDKLVLTQAALSKVEEGLQ 207 >gi|319407425|emb|CBI81076.1| 50S ribosomal protein L4 [Bartonella sp. 1-1C] Length = 206 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 115/206 (55%), Positives = 153/206 (74%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ R++ G +S+GRS+V+ TG Sbjct: 1 MDLIIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARHSS QFRGGGKA GPV H LPKK+R+L LR ALS K ++ Sbjct: 61 AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHNLPKKIRALGLRLALSVKLKTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D L ++ KTK L F L +NAL+I G ++D NF AA NIPNI++LPVQGI Sbjct: 121 NLIIVDELSIRDAKTKVLNMNFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR SKLVLSK A+E LE+RFK Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206 >gi|292669859|ref|ZP_06603285.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541] gi|292648656|gb|EFF66628.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541] Length = 207 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS++++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNQVGEISLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHSTKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D L KTK V ++ + N + + NIP + + G Sbjct: 121 GDFIVLDQLDFDAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|306830303|ref|ZP_07463474.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427550|gb|EFM30651.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTSRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL++ + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206 >gi|302388713|ref|YP_003824534.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646] gi|302199341|gb|ADL06911.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646] Length = 208 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ G+ G + +S+ +F ++ + ++ +V+ +R+G + +K R+EV Sbjct: 1 MPKVALYNMQGQQVGEVELSDSVFGVEVKPEVMHQVVLNYLANQRVGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +R GG FGP P + LPKK++ LAL+ ALS K Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPKPRSYKYTLPKKLKRLALKSALSAKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+I+V+D L + KTK +V L +I D N +ARNIP + V Sbjct: 121 NEIIVLDRLTMEAPKTKEMVKVLSNLKADTKSLIVLDASDVNVVKSARNIPGVTTTTVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL KL+++ A++ +E+ + Sbjct: 181 LNVYDILNHDKLIMTMDAVKRVEEVY 206 >gi|307694151|ref|ZP_07636388.1| 50S ribosomal protein L4 [Ruminococcaceae bacterium D16] Length = 206 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N+ G+ G I +SE +F ++P Q ++ V++ R G + R+EV+ Sbjct: 1 MAKANVFNMAGQQVGEIELSEAVFGIEPNQAVVHEVVKNHLANCRQGTQSALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG F P P + L KKV+ LAL+ ALS K S Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRDYSYTLNKKVKRLALKSALSAKAAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 DI+V+D L KTK + A++ +++I +++ +ARNIP + + Sbjct: 121 GDILVVDELKLDAIKTKDMRNFLNAVEAGKSVVIT-PEVNEIVVKSARNIPGVVTTTAKI 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDI+ +LV+ K+A+ +E+ F Sbjct: 180 LSVYDIVNAKRLVIDKAALAIIEEVF 205 >gi|319757242|gb|ADV69184.1| 50S ribosomal protein L4 [Streptococcus suis JS14] Length = 207 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + +++ IF ++P Q ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FG P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYAYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +++L KT AL + + +++ + + L+ARNIP + + Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANADKLLVTQAAISKIEEVL 206 >gi|320529797|ref|ZP_08030874.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis F0399] gi|320137815|gb|EFW29720.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis F0399] Length = 207 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 103/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G I +++D F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNKVGEIDLNDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+++L KTK V + + N + NIP + + G Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAVTAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K A+ +E+ F Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206 >gi|317123096|ref|YP_004103099.1| 50S ribosomal protein L4P [Thermaerobacter marianensis DSM 12885] gi|315593076|gb|ADU52372.1| LSU ribosomal protein L4P [Thermaerobacter marianensis DSM 12885] Length = 212 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 4/210 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N GE G I +SE +F ++ ++ + + +R G + +K R V+ Sbjct: 1 MPRVAVYNTRGERVGEIELSETVFGAPVREALMHQAVVRYLANQRRGTAATKTRGMVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P ALPKK R ALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPHWRKGGIVFGPQPRDYSQALPKKARRAALRSALSAKVAD 120 Query: 121 NDIMVID---NLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLL 176 +++V++ L + +T+ + LDL + + D L+ARN+P ++ Sbjct: 121 GELIVLEGLKELGLERPRTREVAALIERLDLDGKRPLFVLAEPDPTLYLSARNLPGVDTE 180 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 V +NVY +LR +VL++ A++ +E+ Sbjct: 181 TVDRLNVYKVLRHGHVVLAREAVDRVEEVL 210 >gi|149915845|ref|ZP_01904369.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b] gi|149810168|gb|EDM70014.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b] Length = 205 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLGEDIFGLDPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKKVR L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D S KT L + + L LIIDG +++ +F AA NI +++LP G Sbjct: 121 ELVVLDAATSD-GKTGALAKQIKDLGWKRVLIIDGAEVNADFARAAANIEGVDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|313903150|ref|ZP_07836544.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965] gi|313466652|gb|EFR62172.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965] Length = 212 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 4/210 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N GE G I +S+ +F ++ ++ + + +R G + +K R V+ Sbjct: 1 MPRVAVYNTQGERVGEIELSDAVFGAPVREALMHQAVVRYLANQRRGTAATKTRGMVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+R GG FGP P LPKK R ALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRKGGIVFGPQPRDYTQDLPKKARRAALRSALSAKVAD 120 Query: 121 NDIMV---IDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLL 176 +++V +D+L + +T+ + R LDL + + ++ L+ RN+P + Sbjct: 121 GELIVLEGLDDLGLERPRTREMAALIRRLDLEGKRPLFVLAEPNKTLYLSVRNLPGADTE 180 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 V +NVY +LR +VL++ A+E E+ Sbjct: 181 TVDRLNVYQVLRHGHVVLAREAVERAEEVL 210 >gi|29374852|ref|NP_814005.1| 50S ribosomal protein L4 [Enterococcus faecalis V583] gi|46577230|sp|Q839G3|RL4_ENTFA RecName: Full=50S ribosomal protein L4 gi|29342310|gb|AAO80076.1| ribosomal protein L4 [Enterococcus faecalis V583] Length = 207 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + PKKVR LA++ LSDK Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKFPKKVRRLAMKSVLSDKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + +++ + L+ARN+PN++++ Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206 >gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] gi|237733229|ref|ZP_04563710.1| 50S ribosomal protein L4 [Mollicutes bacterium D7] gi|167703905|gb|EDS18484.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402] gi|229383610|gb|EEO33701.1| 50S ribosomal protein L4 [Coprobacillus sp. D7] Length = 207 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ + V N +G + + ++E +F ++P + L ++ Q R G K K R+EV Sbjct: 1 MLTVKVYNQEGSEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P L +KVR LAL+ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+ M ++ + KTK +V L+ +I ++ N +A NIP + LL + Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLEAPVKTLIVVDEICPNVARSANNIPGVKLLDAKH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +KL+++++AI+++E+ Sbjct: 181 VNVYDILNSNKLIMTEAAIKSVEEVL 206 >gi|291460719|ref|ZP_06600109.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416678|gb|EFE90397.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 206 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV ++ G++ G + +++ +FA + +L + Q +R G K+ R+EV+ Sbjct: 1 MAIVSVFDMQGKEVGKMELNDAVFAAPINEHLLHLAVVAQLANRRQGTKKALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q++GGG F P P L KK + AL+ ALS+ Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYRKDLNKKEKRAALKAALSNAVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ E KTK AL L A + Q D L+ARNI ++ V Sbjct: 121 QKLVVVDSIHFDEIKTKKFQAMLDALKLKKA-FVLLDQNDEKTILSARNIEDVKTAQVNE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+++ ++ +K+A+E LE+ + Sbjct: 180 INVYDVMKYGTVLATKAALEKLEEVY 205 >gi|163745538|ref|ZP_02152898.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45] gi|161382356|gb|EDQ06765.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45] Length = 205 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG + G + + E +F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGNAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++ID + E KT L + L L+IDG ++ NF AARNI +++LP G Sbjct: 121 SLVIIDE-ATSEGKTAALAKQVSNLGWKRTLVIDGASVNENFAQAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|160947699|ref|ZP_02094866.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270] gi|158446833|gb|EDP23828.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270] Length = 207 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N GE G I ++E IF ++ + ++ V++ +R G +K R+EV Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q++GGG F P P +++PKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLSSKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ ++D L TK + L L +I + + + N+P + + V Sbjct: 121 GELRILDALTIDAFSTKKAKEILKNLSLETKTMIVLPEGNDMIVKSFANLPKVETVVVDY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++R LV+ K A+ +E+ + Sbjct: 181 MNVYDLMRFDNLVIVKDALSKIEEVY 206 >gi|58336631|ref|YP_193216.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM] gi|227903188|ref|ZP_04020993.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796] gi|75433039|sp|Q5FM89|RL4_LACAC RecName: Full=50S ribosomal protein L4 gi|58253948|gb|AAV42185.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM] gi|227868993|gb|EEJ76414.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796] Length = 205 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLIVSD--DNNVQLSARNLAKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204 >gi|227499194|ref|ZP_03929329.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21] gi|226904641|gb|EEH90559.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21] Length = 209 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 4/209 (1%) Query: 1 MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++++ +L G+ G I + + +F ++ + ++ + + Q +R G +K R V Sbjct: 1 MPKVAIYDLTGKKTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S + GGG FGP P +P+K R LA+R ALS K Sbjct: 61 GGRKPWKQKGTGRARAGSVRSPLWVGGGTIFGPSPRSHAIDMPRKARRLAIRCALSSKVA 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLP 177 ++++D L + KTK V + + SN ALII + + N +L++RNI + L Sbjct: 121 DGSLVIVDGLSFADNKTKNTVEMLKGFEASNKKALIITDGE-NENVELSSRNIEKVKALS 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL K++L+K A+ +E+ Sbjct: 180 NDCLNVFDILNAEKVLLAKDAVARIEEVL 208 >gi|315640160|ref|ZP_07895282.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952] gi|315484137|gb|EFU74611.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K S Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + +++ + + L+ARN+PN++++ Sbjct: 121 NNLVAVEALSFDAPKTKEFKQVLANLSIDAKVLVVLEEGNDFVALSARNLPNVSVVSADN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSNNKVLATQTALTQIEEVL 206 >gi|325678593|ref|ZP_08158203.1| 50S ribosomal protein L4 [Ruminococcus albus 8] gi|324109643|gb|EGC03849.1| 50S ribosomal protein L4 [Ruminococcus albus 8] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ G +++ IF ++P + ++ ++ +R G + R+EV Sbjct: 1 MSQIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNYLANQRQGTQSTLTRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KK R LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKERRLAMKSALSTKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V++ + +KE KTK +V +A+ +I +D +A NIP + V Sbjct: 121 SNLIVVNEIETKEYKTKVMVDMLKAIGAEGKALIVTADVDAKVVKSAANIPGVKTATVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K V+S A++ +E+ + Sbjct: 181 LNVYDILNYDKFVVSSDAVKKIEEVY 206 >gi|238928154|ref|ZP_04659914.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531] gi|238884114|gb|EEQ47752.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS+S++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMSHNQVGEISLSDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D L KTK V ++ + N + + NIP + + G Sbjct: 121 GDFIVLDQLDFGAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|302382619|ref|YP_003818442.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264] gi|302193247|gb|ADL00819.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 102/206 (49%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LS NLDG+ G + +S+ IF + + +LAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSSINLDGKAAGDVELSDVIFGITDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGP+ LPKKVR+LALRHALS K + Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPIVRDHGFDLPKKVRALALRHALSSKVKT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KE KT L F L + LII G ++D NF LA+RNIP I++LP G Sbjct: 121 GDLVVVDALTVKEAKTSALRETFGKLGWTRTLIIAGPEVDANFALASRNIPQIHVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+KSA+EA+E + Sbjct: 181 LNVYDILRADKLVLTKSAVEAIEATY 206 >gi|83949794|ref|ZP_00958527.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM] gi|83837693|gb|EAP76989.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM] Length = 205 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H LPKKVR L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKVKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++I+ KT L + + L ALIIDG +++ F AARNI +++LP G Sbjct: 121 ELVIIEA-ADSAGKTSALAKQVKDLGWKRALIIDGAEVNAEFAKAARNIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|227550721|ref|ZP_03980770.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330] gi|257878726|ref|ZP_05658379.1| ribosomal protein L4 [Enterococcus faecium 1,230,933] gi|257881367|ref|ZP_05661020.1| ribosomal protein L4 [Enterococcus faecium 1,231,502] gi|257885635|ref|ZP_05665288.1| ribosomal protein L4 [Enterococcus faecium 1,231,501] gi|257888020|ref|ZP_05667673.1| ribosomal protein L4 [Enterococcus faecium 1,141,733] gi|257890585|ref|ZP_05670238.1| ribosomal protein L4 [Enterococcus faecium 1,231,410] gi|257893175|ref|ZP_05672828.1| ribosomal protein L4 [Enterococcus faecium 1,231,408] gi|257896361|ref|ZP_05676014.1| ribosomal protein L4 [Enterococcus faecium Com12] gi|257899335|ref|ZP_05678988.1| ribosomal protein L4 [Enterococcus faecium Com15] gi|258615210|ref|ZP_05712980.1| 50S ribosomal protein L4 [Enterococcus faecium DO] gi|261206994|ref|ZP_05921683.1| ribosomal protein L4 [Enterococcus faecium TC 6] gi|289565371|ref|ZP_06445821.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF] gi|293379447|ref|ZP_06625591.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1] gi|293553880|ref|ZP_06674486.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039] gi|293562947|ref|ZP_06677414.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162] gi|293567930|ref|ZP_06679271.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071] gi|293570685|ref|ZP_06681735.1| ribosomal protein L4/L1 family [Enterococcus faecium E980] gi|294615392|ref|ZP_06695265.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636] gi|294618319|ref|ZP_06697900.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679] gi|294621079|ref|ZP_06700270.1| ribosomal protein L4/L1 [Enterococcus faecium U0317] gi|314937609|ref|ZP_07844935.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a04] gi|314942892|ref|ZP_07849705.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133C] gi|314947972|ref|ZP_07851376.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0082] gi|314950889|ref|ZP_07853958.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133A] gi|314991463|ref|ZP_07856940.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133B] gi|314995016|ref|ZP_07860136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a01] gi|227180182|gb|EEI61154.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330] gi|257812954|gb|EEV41712.1| ribosomal protein L4 [Enterococcus faecium 1,230,933] gi|257817025|gb|EEV44353.1| ribosomal protein L4 [Enterococcus faecium 1,231,502] gi|257821491|gb|EEV48621.1| ribosomal protein L4 [Enterococcus faecium 1,231,501] gi|257824074|gb|EEV51006.1| ribosomal protein L4 [Enterococcus faecium 1,141,733] gi|257826945|gb|EEV53571.1| ribosomal protein L4 [Enterococcus faecium 1,231,410] gi|257829554|gb|EEV56161.1| ribosomal protein L4 [Enterococcus faecium 1,231,408] gi|257832926|gb|EEV59347.1| ribosomal protein L4 [Enterococcus faecium Com12] gi|257837247|gb|EEV62321.1| ribosomal protein L4 [Enterococcus faecium Com15] gi|260078622|gb|EEW66324.1| ribosomal protein L4 [Enterococcus faecium TC 6] gi|289162861|gb|EFD10711.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF] gi|291291686|gb|ADD91677.1| 50S ribosomal protein L4 [Enterococcus faecium] gi|291589515|gb|EFF21322.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071] gi|291591766|gb|EFF23402.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636] gi|291595413|gb|EFF26725.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679] gi|291599315|gb|EFF30341.1| ribosomal protein L4/L1 [Enterococcus faecium U0317] gi|291601932|gb|EFF32178.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039] gi|291605073|gb|EFF34540.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162] gi|291609157|gb|EFF38429.1| ribosomal protein L4/L1 family [Enterococcus faecium E980] gi|292641970|gb|EFF60136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1] gi|313590742|gb|EFR69587.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a01] gi|313593943|gb|EFR72788.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133B] gi|313596898|gb|EFR75743.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133A] gi|313598364|gb|EFR77209.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133C] gi|313642986|gb|EFS07566.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0133a04] gi|313645570|gb|EFS10150.1| ribosomal protein L4/L1 family protein [Enterococcus faecium TX0082] Length = 207 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ I+ L KTK L + + +++ + + L+ARN+PN++++ Sbjct: 121 NNLVAIEGLNFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSNTKVLATQTALTQIEEVL 206 >gi|242278659|ref|YP_002990788.1| 50S ribosomal protein L4 [Desulfovibrio salexigens DSM 2638] gi|259491552|sp|C6C186|RL4_DESAD RecName: Full=50S ribosomal protein L4 gi|242121553|gb|ACS79249.1| ribosomal protein L4/L1e [Desulfovibrio salexigens DSM 2638] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + ++ G + ++ ++F + + IL V+R Q KR G +K R Sbjct: 1 MATITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGGG FGP P + KKVR LAL+ AL+ + Sbjct: 61 GAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ N+ E KTK V AL L AL++ D L+ARNIP I L+ Sbjct: 121 EKMMVVKNIDLPEIKTKLFVEVAEALGLEKALVVV-KDADNKLLLSARNIPGIKLITADQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYDIL+ +LV+ ++A + L++R K Sbjct: 180 LNVYDILKARQLVMLENAAQDLQERLK 206 >gi|160914558|ref|ZP_02076773.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991] gi|158433716|gb|EDP12005.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991] Length = 209 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + +G++ I++++ +F ++P Q + + Q R G +K R+EV+ Sbjct: 1 MPKMVVLSQNGKELKEITLADSVFGIEPNQQCIFDAIVMQRASVRQGTHDTKNRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRSYSYKLNKKVRRLALKSVLSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLD-RNFQLAARNIPNINLLPV 178 N + V+D E KTK ++ L + D N L+ RNIP + +L Sbjct: 121 NAMSVVDKFELAEPKTKAFNQIIADINAPKKTLFVVSENEDFENAFLSMRNIPTMMMLTA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINVYDI+ +K+V +++A++ +E+ Sbjct: 181 DGINVYDIVNANKIVFTEAAVKDVEEAL 208 >gi|89070556|ref|ZP_01157845.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516] gi|89043863|gb|EAR50061.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 124/206 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V LDG G + + E++F L+P+ IL RV+RWQ + G K K R E +Y+ Sbjct: 1 MKADVIKLDGGKAGSVELDEELFGLEPRTDILHRVVRWQRNNAQQGTHKVKTRRETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKQKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + E KT L + + L AL+IDG ++ +F AARN+ N+++LP G Sbjct: 121 ELVVIDTIEIAEAKTSQLAKQVKNLGWKRALVIDGAAVNEDFAKAARNLANLDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 181 NVYDILKSDTLVLTKAGVEALEARLK 206 >gi|159042833|ref|YP_001531627.1| 50S ribosomal protein L4 [Dinoroseobacter shibae DFL 12] gi|189029501|sp|A8LM49|RL4_DINSH RecName: Full=50S ribosomal protein L4 gi|157910593|gb|ABV92026.1| 50S ribosomal protein L4/L1e [Dinoroseobacter shibae DFL 12] Length = 205 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 129/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDGE G + + E +F L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGEAAGSVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FR GG GP P H LPKK R L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRKGGIYKGPTPRSHAHDLPKKFRKLGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + + E KT L + + L AL+IDG Q+D F AA NI +++LP G Sbjct: 121 ELVVID-MATSEGKTATLAKQIKNLGWKRALVIDGAQVDAGFAKAAANIDTLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|197104697|ref|YP_002130074.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1] gi|226730702|sp|B4R8L8|RL4_PHEZH RecName: Full=50S ribosomal protein L4 gi|196478117|gb|ACG77645.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1] Length = 212 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 99/207 (47%), Positives = 135/207 (65%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G I + +DIF ++ + IL R + WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKGGSIELPDDIFGIEEIRADILQRCVTWQLAKRRAGTHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ +QF GG KA GPV LPKKVR+LALRHALS K Sbjct: 61 GKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKVRALALRHALSSKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ E KT L F + ++NAL+I G Q+D N +LAARNIPN+++LP G Sbjct: 121 GSLIVLDSATLTEAKTAALRASFEKIGVTNALVIAGAQVDNNLKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+LR LVL+K A+ A++ RF+ Sbjct: 181 LNVYDVLRRRTLVLTKDAVAAIQARFQ 207 >gi|291166878|gb|EFE28924.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896] Length = 207 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++GE + +SE++F + + ++ +V++ KR+G +K R+EV Sbjct: 1 MPTVDVLNINGEKVSEMELSENLFGAEINEHVVYQVVKNHLANKRVGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S Q++GGG F P P + +PKK+R LAL+ L+DK Sbjct: 61 GAKPWRQKGTGRARQGSIRSPQWKGGGVVFAPKPRDYSYTVPKKIRRLALKSVLTDKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D++ E KT+ AL + ++ + RNI N+ + V Sbjct: 121 GNLVVVDDINLTEWKTREFAKMLSALKVGKKALVVTKDNSPEVVRSGRNIKNVKIAFVGT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL + LVL+K A+ E+ + Sbjct: 181 MNVYDILNANTLVLTKDAVAKAEEVY 206 >gi|260558288|ref|ZP_05830484.1| ribosomal protein L4 [Enterococcus faecium C68] gi|260075462|gb|EEW63768.1| ribosomal protein L4 [Enterococcus faecium C68] Length = 207 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ I+ L KTK L + + +++ + + L+ARN+PN++++ Sbjct: 121 NNLVAIEGLKFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSNTKVLATQTALTQIEEVL 206 >gi|257064319|ref|YP_003143991.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476] gi|256791972|gb|ACV22642.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476] Length = 207 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 102/207 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N GE + + +F ++P ++ V+R Q R G +K R EV Sbjct: 1 MATIEIKNASGEKASEVELESAVFGIEPNVHVMHTVVRSQQAAMRQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+ GGG FGP P + +K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNRKEVKLAMRSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+++ ++ TK V +A L I D N L+ RNIP +N++ V Sbjct: 121 GQLMVVEDFKFEKPCTKEAVAFLKANGLDRRTTIVIPNDDVNAYLSFRNIPKVNVISVGE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 N +++ LVL+ S ++ LE+ K Sbjct: 181 ANTMELIDNKVLVLTASTLKRLEEVLK 207 >gi|304438363|ref|ZP_07398304.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368729|gb|EFM22413.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V ++ G IS+++ F ++ G+L + + Q +R+G +K R V Sbjct: 1 MANVAVYDMAHNQVGEISLNDAFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LAL+ ALSDK + Sbjct: 61 GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D +V+D+L KTK V + + N + + NIP + + G Sbjct: 121 GDFIVLDHLDFDAPKTKAAVKLLSDFGVDAKSLFITADEAVNVERSTSNIPGVKAITASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV+DIL KL ++K AI +E+ F Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206 >gi|282882504|ref|ZP_06291125.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B] gi|281297646|gb|EFA90121.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G I V+++IF + ++ V++ +R G +K RSEV Sbjct: 1 MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG F P + PKKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L E KTK +V + + +I + N +ARNI + V+ Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSARNIEGVKTEFVKN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + LV++K A++ LE+ F Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206 >gi|327458432|gb|EGF04788.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ G + +++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D+L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++++ I +E+ Sbjct: 181 ASVLDIVNSDKLLVTQAVISKIEEVL 206 >gi|309777134|ref|ZP_07672097.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915004|gb|EFP60781.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 209 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G++ I++++ +F ++P Q + + Q R G +K R+EV Sbjct: 1 MPKMVVLSQTGKELKEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P + L KKVR LAL+ ALS+K Sbjct: 61 GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178 N + V+D + KTK ++ + + + N L+ RNIP + +L Sbjct: 121 NAMGVVDKFELEAPKTKAFNQIVADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDI+ +K+V +++A++ +E+ Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208 >gi|297836242|ref|XP_002886003.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata] gi|297331843|gb|EFH62262.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata] Length = 297 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 88 IPVTNFQSEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 147 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 148 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 207 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + + + L+++G +D +LA +N+ +N++P G+N Sbjct: 208 LVFDDLALPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 267 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL LV+S+ A+ + +R Sbjct: 268 VYSILLHDTLVMSRDAVNKIVER 290 >gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040] gi|122398432|sp|Q1GK36|RL4_SILST RecName: Full=50S ribosomal protein L4 gi|99036368|gb|ABF62980.1| LSU ribosomal protein L4P [Ruegeria sp. TM1040] Length = 205 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AA+NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+KSA+EALE R K Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205 >gi|260425505|ref|ZP_05779485.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45] gi|260423445|gb|EEX16695.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45] Length = 205 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + ++++IF L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGTAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR+L L+ ALS K S Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRALGLKMALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID E KTK L + ++L ALIIDG ++ F AA NI +++LP G Sbjct: 121 ALVVIDT-ADSEGKTKALAAQVKSLGWKRALIIDGAAVNEAFAKAAANIDGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|116334268|ref|YP_795795.1| 50S ribosomal protein L4 [Lactobacillus brevis ATCC 367] gi|122269050|sp|Q03PV8|RL4_LACBA RecName: Full=50S ribosomal protein L4 gi|116099615|gb|ABJ64764.1| LSU ribosomal protein L4P [Lactobacillus brevis ATCC 367] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + ++ DIF ++P + ++ + Q R G K RS V Sbjct: 1 MTSVALYKQDGSQNGNVELNADIFGVEPNENVVFDTILMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LPKKV LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYRLPKKVSRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +V+D L KTK L+++ ++ + LAARN+ N+ ++P +G Sbjct: 121 ESFVVVDGLAFDAPKTKEFAAVLAGLNVTTKTLVVLEDDNVTAALAARNLTNVKVIPAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI KLV+++ A+ +E+ Sbjct: 181 LNVLDIADADKLVITQPALSQVEEVL 206 >gi|90020608|ref|YP_526435.1| 50S ribosomal protein L4 [Saccharophagus degradans 2-40] gi|109893634|sp|Q21M56|RL4_SACD2 RecName: Full=50S ribosomal protein L4 gi|89950208|gb|ABD80223.1| LSU ribosomal protein L4P [Saccharophagus degradans 2-40] Length = 204 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ G G +SVSE F + Q ++ + + R G K R+ V+ G Sbjct: 1 MELSIATPQGAK-GTVSVSEAAFGREFNQDLVHQAVVAFMAGARQGTKAQKNRAAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P L KK+ A+R LS+ Sbjct: 60 KKPWRQKGTGRARAGTIRSPLWRSGGVTFAAEPRDHSQKLNKKMYRAAIRCILSELARQE 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + DL++ LII G + N LAARN+ +++ V G+ Sbjct: 120 RLVVVEEFDLDAPKTKDLVQKLAQFDLADVLII-GEDVSENLYLAARNLHKVDVRDVNGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K+V++ +A++ LE+ Sbjct: 179 DPVSLIRFDKVVVTVAALKKLEEVL 203 >gi|300814627|ref|ZP_07094878.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511246|gb|EFK38495.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N++G I V+++IF + ++ V++ +R G +K RSEV Sbjct: 1 MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG F P + PKKVR LAL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++I+V+D L E KTK +V + + +I + N ++RNI + V+ Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSSRNIEGVKTEFVKN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ + LV++K A++ LE+ F Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206 >gi|268609592|ref|ZP_06143319.1| 50S ribosomal protein L4 [Ruminococcus flavefaciens FD-1] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV ++ G+ +++++F + P +G++ + +R G + R+EV+ Sbjct: 1 MSTISVFDMTGKQVSETELNDEVFGITPNEGVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P +AL KKV+ LA++ ALS K Sbjct: 61 GRKPWRQKGTGHARQGSTRAPQWVHGGIALGPKPRDYRYALNKKVKRLAMKSALSTKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L + KTK +V +AL + +I + D +A NIP + V Sbjct: 121 NNMIVLDALTLESYKTKPVVEMLKALGVEGKALIVTAEADAKVIKSAANIPGVKTAAVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++ K+A+ +E+ + Sbjct: 181 LNVYDILNYDKFIVVKNAVGKIEEVY 206 >gi|227485524|ref|ZP_03915840.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172] gi|227236523|gb|EEI86538.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE+ G + ++E IFA K + + V++ Q KR G +K R+EV Sbjct: 1 MPKVNILNIKGENVGELELNETIFATKVSEHAVYEVIKNQLANKRQGTQSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + L KK+R AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYRLAKKLRRKALYSVLTSKLND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D+L + KTK AL+ + + D + RNI + + + Sbjct: 121 NELIVVDSLALENAKTKEAKAALVALNADRKAYVVTAEKDELVYRSFRNIEGVEVAEARL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++R KLV++K AI L++ F Sbjct: 181 INVYDLVRHDKLVITKDAIAKLQEVF 206 >gi|256618379|ref|ZP_05475225.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200] gi|256597906|gb|EEU17082.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q G K RS V Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLGQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++ ++ L KTK L + +++ + L+ARN+PN++++ Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ +K++ +++A+ +E+ Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206 >gi|114799746|ref|YP_761528.1| 50S ribosomal protein L4 [Hyphomonas neptunium ATCC 15444] gi|123128466|sp|Q0BYB5|RL4_HYPNA RecName: Full=50S ribosomal protein L4 gi|114739920|gb|ABI78045.1| ribosomal protein L4 [Hyphomonas neptunium ATCC 15444] Length = 214 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 130/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V+ L G+ G I + + IF + + + IL R +RWQ R++ G K+K RSEV T Sbjct: 1 MELAVKTLAGDAAGNIDLDDAIFGIDEIRGDILQRTVRWQLARRQAGTHKAKSRSEVNRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG+G ARH S++ F GGG A GP H LPKK+R +AL HALS K Sbjct: 61 TKKSIKQKGSGGARHGSRNAPIFVGGGIAHGPRVRSHAHDLPKKIRKMALAHALSSKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + IMVID KTK L+ F+ L + NALII G +++ NF AARNIPNI++LPV G Sbjct: 121 SSIMVIDTCELDSPKTKGLIQAFKDLGIENALIISGTEVNENFARAARNIPNIDVLPVAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LV++K A E ++ RF Sbjct: 181 LNVYDILRRRTLVITKEAAEGIKARF 206 >gi|84503641|ref|ZP_01001679.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597] gi|84387938|gb|EAQ00990.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597] Length = 205 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + ++IF L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGSSAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GPVP H LPKK R L L+HALS K Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVPRSHGHDLPKKFRKLGLKHALSAKVKEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++ID S+ KT L + +AL ALIIDG ++ F AA NI +++LP G Sbjct: 121 SLVIIDAAESE-GKTNALAKQVKALGWKRALIIDGAAVNEGFAKAAANIDGLDVLPSVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor] gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor] Length = 294 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 87 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 146 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 147 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 206 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R + D L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 207 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 266 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV++++AI + +R Sbjct: 267 SILQHDTLVMTRAAINRIVER 287 >gi|116748991|ref|YP_845678.1| 50S ribosomal protein L4/L1e [Syntrophobacter fumaroxidans MPOB] gi|166199918|sp|A0LIJ1|RL4_SYNFM RecName: Full=50S ribosomal protein L4 gi|116698055|gb|ABK17243.1| LSU ribosomal protein L4P [Syntrophobacter fumaroxidans MPOB] Length = 207 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N + + G + +S+ +FA+ + +L V+ +Q ++R G K+KGRS+VA Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGGG GP P +PKKVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D L ++ KT+ +LS L++ Q D Q +ARNIPN+ +L +G Sbjct: 121 RELTVLDQLQLEQIKTRDFAAILDRFELSKTLVVI-AQPDEKLQKSARNIPNVKVLRTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L ++L++ I +E+ Sbjct: 180 LNVYDLLNHRSVLLTRETIGKIEETL 205 >gi|259416401|ref|ZP_05740321.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B] gi|259347840|gb|EEW59617.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B] Length = 205 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL R++RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AA+NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+KSA+EALE R K Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205 >gi|217077284|ref|YP_002335002.1| 50S ribosomal protein L4 [Thermosipho africanus TCF52B] gi|226731434|sp|B7IHU7|RL4_THEAB RecName: Full=50S ribosomal protein L4 gi|217037139|gb|ACJ75661.1| ribosomal protein L4/L1 family [Thermosipho africanus TCF52B] Length = 221 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 14/220 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ N GE+ G I + +++FA++P ++ R + Q R G + +K R EV+ Sbjct: 1 MAKVSLFNSKGENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS + Sbjct: 61 GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDR--NFQLAARNIPNINLL 176 +++V+D + K KTK L + L L N L++ +++ N +++ RNIP + ++ Sbjct: 121 GNLIVVDEIKFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVI 180 Query: 177 PV----------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDIL KLVL + ++ +E+ Sbjct: 181 IADNPGVDRTNIDGLNVYDILNHDKLVLLQGTVQKIEEVL 220 >gi|255262953|ref|ZP_05342295.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62] gi|255105288|gb|EET47962.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62] Length = 206 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 125/206 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +DG G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKADAIKMDGGKAGSVDLDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTVRSHGHELTKKFRKLGLRHALSAKATAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID K+ KT L + + L ALIIDG +++ NF +AARNI +++LP G Sbjct: 121 ELVIIDVADLKDAKTSALAKQVKDLGWKRALIIDGAEVNENFAVAARNIDTVDILPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 181 NVYDILKSDTLVLTKAGVEALEARLK 206 >gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] gi|256849182|ref|ZP_05554615.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US] gi|262047198|ref|ZP_06020156.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US] gi|293380378|ref|ZP_06626449.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1] gi|295692161|ref|YP_003600771.1| 50S ribosomal protein l4 [Lactobacillus crispatus ST1] gi|227861138|gb|EEJ68787.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01] gi|256713958|gb|EEU28946.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US] gi|260572443|gb|EEX29005.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US] gi|290923061|gb|EFD99992.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1] gi|295030267|emb|CBL49746.1| 50S ribosomal protein L4 [Lactobacillus crispatus ST1] Length = 205 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNGLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L + A++ +E+ Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEEVL 204 >gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis] gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis] Length = 298 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R+ D + G++ + D+F + P+ IL +V+ WQ KRI +K K R+EV G K Sbjct: 73 SLRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKP 132 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+GRAR S +RGGG A GP P + +P K+R L+ AL+ K +D+ Sbjct: 133 RQQKGSGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDL 192 Query: 124 MVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGI 181 VID+L +YLV + + LI+D + L N A N+ IN++P G+ Sbjct: 193 HVIDSLEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENLFNATVNLKKINVIPAIGL 252 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +V+ +L+ +VL+ A++ LE++ Sbjct: 253 SVFGMLKHDTVVLTVGAVDFLEEKL 277 >gi|237786394|ref|YP_002907099.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385] gi|259491550|sp|C4LL51|RL4_CORK4 RecName: Full=50S ribosomal protein L4 gi|237759306|gb|ACR18556.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385] Length = 219 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V DG G + + +F ++ +L +V+ Q +R G +K R +V G Sbjct: 5 TLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 65 KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYDQRTPKKMKAAALRGALSDRARHDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+++LV + TK T L ++++ + D N +ARN+PN+++LP + Sbjct: 125 IHVVEDLVPGQTPSTKAARTFIGRLTDRKSVLVVLGREDVNSIKSARNLPNVHILPSDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L LV S A+ A +R Sbjct: 185 NTYDVLNSDDLVFSVEALNAFIER 208 >gi|154253178|ref|YP_001414002.1| 50S ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1] gi|171769628|sp|A7HWR2|RL4_PARL1 RecName: Full=50S ribosomal protein L4 gi|154157128|gb|ABS64345.1| ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1] Length = 206 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 103/206 (50%), Positives = 144/206 (69%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V L+ + G + +++ +FAL+P+ IL R++ WQ +++ G K+KGRSE+A TG Sbjct: 1 MKIDVTTLEAKKAGSVDLTDGVFALEPRGDILHRMVAWQLAKRQAGTHKTKGRSEIALTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + QFRGGGKAFGPV +PKKVR+LAL+ ALS K S+ Sbjct: 61 KKFVKQKGSGGARHGDRKAPQFRGGGKAFGPVVRSHAFDMPKKVRALALKLALSAKAKSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D E +TK F L L + LIIDG +LD NF LAARN+PN+++LPVQGI Sbjct: 121 NLVILDEAKLAEPRTKAAKDAFEKLGLKSVLIIDGAELDANFALAARNLPNVDVLPVQGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+K+A+E+LE RFK Sbjct: 181 NVYDILRREKLVLTKAAVESLEARFK 206 >gi|323465825|gb|ADX69512.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETVIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204 >gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera] Length = 278 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 69 IPVTNFHNEDKGFMXLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 128 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + Sbjct: 129 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 188 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + + + L++DG + +LA +N+ +N+LP G+N Sbjct: 189 LVFDDLEVPSHKTKNIVNYVKEMENXKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 248 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL LV+S+ A+ + +R Sbjct: 249 VYSILLHDTLVMSRBAVNKIVER 271 >gi|55821904|ref|YP_140346.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311] gi|55823820|ref|YP_142261.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066] gi|116628597|ref|YP_821216.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMD-9] gi|228478067|ref|ZP_04062678.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius SK126] gi|322515868|ref|ZP_08068810.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124] gi|81558868|sp|Q5LXR2|RL4_STRT1 RecName: Full=50S ribosomal protein L4 gi|81560055|sp|Q5M2B4|RL4_STRT2 RecName: Full=50S ribosomal protein L4 gi|122266809|sp|Q03IF2|RL4_STRTD RecName: Full=50S ribosomal protein L4 gi|55737889|gb|AAV61531.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311] gi|55739805|gb|AAV63446.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066] gi|116101874|gb|ABJ67020.1| LSU ribosomal protein L4P [Streptococcus thermophilus LMD-9] gi|228250247|gb|EEK09500.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius SK126] gi|312279258|gb|ADQ63915.1| 50S ribosomal protein L4 [Streptococcus thermophilus ND03] gi|322125655|gb|EFX96982.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFAAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206 >gi|322374046|ref|ZP_08048580.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150] gi|321277012|gb|EFX54083.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150] Length = 207 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206 >gi|297569421|ref|YP_003690765.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2] gi|296925336|gb|ADH86146.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2] Length = 207 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V N+ E G + + + +F ++ +L ++R Q +R G + +K R +V+ + Sbjct: 1 MAVTEVYNIKKEKVGDVELDDALFGVEVNPHLLHDIVRMQRANRRAGTACTKTRKDVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S+ +RGGG FGP P ++P+K R L LR ALS + Sbjct: 61 GKKPWRQKGTGRARAGSRKSPVWRGGGTVFGPRPRSYAFSMPRKARKLGLRMALSSRCAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D+ E KTK V + NALI+ + + ++RN+P ++P +G Sbjct: 121 NLLVVLDDFQLDEIKTKKFVEVMDGFSIDNALIVVPESI-ETLERSSRNVPGFKVMPTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +VL + IE L +R Sbjct: 180 LNVYDILLHKHIVLLQPCIEQLRERL 205 >gi|310829584|ref|YP_003961941.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612] gi|308741318|gb|ADO38978.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612] Length = 206 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G G + +SE +F ++P + ++ V+ KR G + RSEV Sbjct: 1 MPKMDILDVKGNVVGDVELSERVFGIEPNEPVVHEVVVALLANKRQGTKGTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG F P + KKVR+LA+R S K Sbjct: 61 GRKPWRQKGTGRARAGTSRSPLWIGGGVIFAPKSRDYSKKVNKKVRNLAMRSVFSAKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D L KTK +V A++ ALI+ + D +A NI + V Sbjct: 121 NELRVLDQLTMDAPKTKEMVGILSAINAPKALIVT-AEKDDAVVRSANNIQKVATTTVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ LV++K A+E +E+ + Sbjct: 180 LNVYDMLKYDVLVMTKDALEKIEEVY 205 >gi|212697254|ref|ZP_03305382.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM 7454] gi|212675703|gb|EEB35310.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM 7454] Length = 207 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + ++ Q KR G +K RSEV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +PKK++ AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMKRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK + + + D + RNI ++ Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKADKKAYVVIAENDDKVYRSFRNIEGCDVEKANL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR +KLV++K AI LE+ F Sbjct: 181 INVYDLLRHNKLVITKEAIAKLEEVF 206 >gi|21553676|gb|AAM62769.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 300 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 91 IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + + + L+++G +D +LA +N+ +N++P G+N Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL LV+S+ A+ + +R Sbjct: 271 VYSILLHDTLVMSRDAVNKIVER 293 >gi|289523368|ref|ZP_06440222.1| ribosomal protein L4/L1 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503060|gb|EFD24224.1| ribosomal protein L4/L1 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 208 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +DG+ G +++++D+FA + + +V+ +R G +K R EV Sbjct: 1 MPTVDVIGIDGQKVGEVALADDVFAARIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GG GP P + KKV+ LA++ ALS K Sbjct: 61 GRKPWRQKHTGRARHGSIRSPLWIKGGVVHGPKPRSYDQKVNKKVKQLAIKSALSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +++++ + + KTK + +I + + +AARNIP +L V Sbjct: 121 NKLILVEGIETMSPKTKDMCAFLANAQAQAKPLIVIHESLPSIYMAARNIPGTRVLHVDS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVY+IL L+L+K A + LE+ + Sbjct: 181 INVYEILNHEHLILTKGAAQRLEEVY 206 >gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group] Length = 353 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 116/201 (57%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 146 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 205 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 206 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 265 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V + L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 266 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 325 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV++++AI + +R Sbjct: 326 SILQHDTLVMTRNAINRIVER 346 >gi|126739690|ref|ZP_01755382.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6] gi|126719336|gb|EBA16046.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL R++RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRLVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI++ + E KT L + + L AL+IDG ++ +F A+RNI +++LP G Sbjct: 121 ELVVIED-AASEGKTAALAKQVKDLGWKRALVIDGASVNEDFLKASRNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|56698635|ref|YP_169012.1| 50S ribosomal protein L4 [Ruegeria pomeroyi DSS-3] gi|81558238|sp|Q5LLU7|RL4_SILPO RecName: Full=50S ribosomal protein L4 gi|56680372|gb|AAV97038.1| ribosomal protein L4 [Ruegeria pomeroyi DSS-3] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + G K +SEV+Y+ Sbjct: 1 MKLDVIKLDGTKAGNIDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKSPTFRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F AARNI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGAAVNEGFARAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+A+EALE R K Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205 >gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238] gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ LDG+ G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKADAIKLDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++D++ K+ KT L + AL LIID ++ NF +AARNI IN LPV G Sbjct: 121 ELVIVDSIDMKDAKTSALAKQVGALGWKRCLIID-ATVNENFAVAARNITTINALPVMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+ +EALE R K Sbjct: 180 NVYDILRSDTLVLTKAGVEALEARLK 205 >gi|257790718|ref|YP_003181324.1| 50S ribosomal protein L4/L1e [Eggerthella lenta DSM 2243] gi|317488571|ref|ZP_07947116.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA] gi|325832045|ref|ZP_08165142.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1] gi|257474615|gb|ACV54935.1| ribosomal protein L4/L1e [Eggerthella lenta DSM 2243] gi|316912313|gb|EFV33877.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA] gi|325486366|gb|EGC88818.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 103/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +++ G+ G ++ +F ++P ++ +V+R Q R G +K R +V Sbjct: 1 MTTIEIKDASGKKAGTADLAASVFGIEPNVPVMHQVVRAQRASWRQGTHDTKTRGQVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+ GGG FGP P + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D ++ TK V +AL L + D N L+ RNIP +N+LPV Sbjct: 121 GELFVVDAFNFEKPSTKAAVAALKALGLERRTTLVIDDEDVNTYLSFRNIPTVNILPVSA 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 N Y+++ LV + A++ +E+ Sbjct: 181 ANTYELIDNKALVFTADALKRIEEVL 206 >gi|161485627|ref|YP_064861.2| 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N + E I +++ IF + ++ IL V+R Q KR G + +K R EV Sbjct: 1 MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P L +KVR A+ ALS +F Sbjct: 61 GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+DN + KTK + + L+L+NALI+ N + RN+ +LP +G Sbjct: 121 GNLIVLDNFIMDAIKTKEFASTMKTLELANALIVMD-DASENLSKSCRNVHGYRILPAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K+VL K IE+LE R Sbjct: 180 LNVYDILLHKKVVLVKPVIESLEKRL 205 >gi|163740232|ref|ZP_02147626.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10] gi|161386090|gb|EDQ10465.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + ++F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKVGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N KT L + + L AL+IDG +D F AARNI +++LP G Sbjct: 121 ELVVIEN-ADSAGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|328884427|emb|CCA57666.1| LSU ribosomal protein L4p [Streptomyces venezuelae ATCC 10712] Length = 216 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 105/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + E+IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKTGTVELPEEIFGAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKVAALRGALSDRATH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGEISTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K+A+E+ Sbjct: 181 LNTYDVIVSDDVVFTKAALESF 202 >gi|86135763|ref|ZP_01054342.1| 50S ribosomal protein L4 [Roseobacter sp. MED193] gi|85826637|gb|EAQ46833.1| 50S ribosomal protein L4 [Roseobacter sp. MED193] Length = 205 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NLDG G I ++ D+F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVMNLDGSKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GPV H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI + + E KT L + L AL+IDG +++ F A+RNI +++LP G Sbjct: 121 ELVVISD-AAAEGKTGALAKQVANLGWKRALVIDGAEVNEGFLKASRNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGLEALEARLK 205 >gi|315497974|ref|YP_004086778.1| ribosomal protein l4/l1e [Asticcacaulis excentricus CB 48] gi|315415986|gb|ADU12627.1| ribosomal protein L4/L1e [Asticcacaulis excentricus CB 48] Length = 210 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 102/207 (49%), Positives = 134/207 (64%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G + VS+ +F L+ + ILARV+ WQ ++R G K + R+E + T Sbjct: 1 MKLDVITLDNGTAGSVDVSDAVFGLEEIRNDILARVVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKG+G ARH S+ QF GG +AFGPV L KKVR+L LRHALS K + Sbjct: 61 GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLQKKVRALGLRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D KT L +F L L NALII G ++D NF LA+RNIPNI++LP G Sbjct: 121 GALIVLDQATLDSAKTAALRAKFETLGLKNALIIAGPEVDTNFALASRNIPNIDVLPSAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+LR LVL+KSA+EA+E RFK Sbjct: 181 LNVYDVLRRHTLVLTKSAVEAIEARFK 207 >gi|81642546|sp|Q6AP70|RL4_DESPS RecName: Full=50S ribosomal protein L4 gi|50876014|emb|CAG35854.1| probable 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54] Length = 211 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N + E I +++ IF + ++ IL V+R Q KR G + +K R EV Sbjct: 5 MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 64 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S++ +RGGG FGP P L +KVR A+ ALS +F Sbjct: 65 GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 124 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+DN + KTK + + L+L+NALI+ N + RN+ +LP +G Sbjct: 125 GNLIVLDNFIMDAIKTKEFASTMKTLELANALIVMD-DASENLSKSCRNVHGYRILPAEG 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K+VL K IE+LE R Sbjct: 184 LNVYDILLHKKVVLVKPVIESLEKRL 209 >gi|163739438|ref|ZP_02146848.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107] gi|161387191|gb|EDQ11550.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107] Length = 205 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + ++F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N KT L + + L AL+IDG +D F AARNI +++LP G Sbjct: 121 ELVVIEN-ADSAGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|260102356|ref|ZP_05752593.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075] gi|260083800|gb|EEW67920.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075] gi|328463365|gb|EGF35038.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463] Length = 205 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204 >gi|294675857|ref|YP_003576472.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003] gi|294474677|gb|ADE84065.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003] Length = 206 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 123/206 (59%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I + E +F L+P+ IL RV+RWQ + + G G+S+V+Y+ Sbjct: 1 MKLDVIKLDGGTAGSIELDEALFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK FR GG GP P H L KK R+L LRHALS K S Sbjct: 61 KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLTKKFRALGLRHALSAKAKSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI+ E KT L + L L+IDG ++ NF LAARN+ I++LP G Sbjct: 121 SLVVIEAADMAEAKTALLAKAAKELGWKKVLVIDGASVNENFALAARNLDGIDVLPTMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206 >gi|254510767|ref|ZP_05122834.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11] gi|221534478|gb|EEE37466.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I ++ D+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FRGGG GPV H LPKK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VI+N E KT L + L AL+IDG ++ F A++NI +++LP G Sbjct: 121 ELVVIEN-AEAEGKTAALAKQVANLGWKRALVIDGATVNEGFLKASKNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+A+EALE R K Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205 >gi|161506874|ref|YP_001576828.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571] gi|172048368|sp|A8YXK6|RL4_LACH4 RecName: Full=50S ribosomal protein L4 gi|160347863|gb|ABX26537.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571] Length = 205 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L++ ++I D N QL+ARN+ + +PV G Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204 >gi|325848833|ref|ZP_08170343.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480477|gb|EGC83539.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 207 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE+ G I ++E +FA + + ++ Q KR G +K RSEV Sbjct: 1 MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG F P P + +P+K++ AL L+ K Sbjct: 61 GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPRKMKRKALYSVLTSKVND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V+D L KTK + + + D + RNI N+ Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKADKKAYVVIAENDDKVYRSFRNIEGCNVEKANL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+LR +KLV++K AI LE+ F Sbjct: 181 INVYDLLRHNKLVITKEAIAKLEEVF 206 >gi|256844430|ref|ZP_05549916.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN] gi|256613508|gb|EEU18711.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN] Length = 205 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P + ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSILNGLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L + A++ +E+ Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEEVL 204 >gi|154498884|ref|ZP_02037262.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC 29799] gi|150271724|gb|EDM98950.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC 29799] Length = 206 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V ++ G+ G + +S+ IF ++P ++ ++ R G + R+EV+ Sbjct: 1 MPKATVVDMTGKKVGEVDLSDAIFGIEPNVSVVHEAVKNHLANCRQGTQSALTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P + L KKV+ LAL+ ALS K Sbjct: 61 GIKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYSYTLNKKVKRLALKSALSAKAAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + A++ A+++ +++ N L+ARNIP + + Sbjct: 121 GNVIVVDGLNLDAVKTKNMAAFLGAVESKKAVLVT-NEVNENVVLSARNIPGVVTTTAKL 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VYDI+ ++ ++ K+A+ +E+ F Sbjct: 180 LSVYDIVNANQFIVDKAALAVIEEVF 205 >gi|315037531|ref|YP_004031099.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112] gi|325956004|ref|YP_004286614.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC] gi|312275664|gb|ADQ58304.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112] gi|325332569|gb|ADZ06477.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC] gi|327182827|gb|AEA31274.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1118] Length = 205 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + +PV G Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLIVTD--DNNVQLSARNLAKVKAVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+LS+ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILSQDAVKKIEEVL 204 >gi|218282170|ref|ZP_03488469.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989] gi|218216849|gb|EEC90387.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989] Length = 209 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N G G I +++ +F ++P Q + L Q +R G + +KGRSEV+ Sbjct: 1 MATIDVINQTGAVVGSIELNDAVFGIEPHQQAMYDALVMQMASRRQGTADTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +QFRGGG FG P + + KKVR LA++ ALS+K Sbjct: 61 GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRNYAYRINKKVRRLAVKSALSEKVQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR--NFQLAARNIPNINLLPV 178 V+D E KTK V+ A+ + + N L+ARNI ++ Sbjct: 121 TAFSVLDKFEIAEPKTKTFVSIIEAIQAPKKTLFVVADSEEATNVYLSARNIAGATVMAA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD++ +K+V++ +A++ +E+ Sbjct: 181 SAINTYDLVNANKVVMTSAAVKQVEEAL 208 >gi|116490659|ref|YP_810203.1| 50S ribosomal protein L4P [Oenococcus oeni PSU-1] gi|290890075|ref|ZP_06553158.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429] gi|122277157|sp|Q04G84|RL4_OENOB RecName: Full=50S ribosomal protein L4 gi|116091384|gb|ABJ56538.1| LSU ribosomal protein L4P [Oenococcus oeni PSU-1] gi|290480266|gb|EFD88907.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429] Length = 207 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 114/206 (55%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG G + +++ IFA++P + ++ + Q R G K RS V+ Sbjct: 1 MTKVALYKQDGTQAGEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+RGG + GP+P + + +K LAL+ LSDK + Sbjct: 61 GRKPWRQKGTGNARQGSIRAPQWRGGAISMGPIPRPYAYKINRKAYRLALKSVLSDKVSA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++ID L ++ TK + L+ + ++ + N +L+ARN+PN+ + G Sbjct: 121 KNFVIIDELNFEKPSTKAIADSLNKLEATKKTLLVVDDANENAKLSARNLPNVQVTTASG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+++ K+V+ +SA++ +E+ Sbjct: 181 VNVYDLVKAQKVVIVQSAVKQVEEVL 206 >gi|227894521|ref|ZP_04012326.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047] gi|227863680|gb|EEJ71101.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047] Length = 205 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + +G+D G +++++ +F ++P ++ + Q KR G SK K RS V Sbjct: 1 MANLKVMDQNGKDSGEVTLNDKVFGIEPNDSVVFEAIIRQRAGKRQGTSKVKNRSVVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D L KTK LV+ +L+ ++I D N QL+ARN+ + ++PV G Sbjct: 121 KDLIVLDKLTMSAPKTKELVSMLSSLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KL+L++ A++ +E+ Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204 >gi|149203512|ref|ZP_01880482.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035] gi|149143345|gb|EDM31384.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035] Length = 205 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH K+ FR GG GP P H LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D S KT L + + L L+IDG Q++ F AA NI +++LP G Sbjct: 121 ALVILDE-ASSNGKTGELAKQVKNLGWKRVLVIDGAQVNAEFARAAANIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|254463733|ref|ZP_05077144.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I] gi|206684641|gb|EDZ45123.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I] Length = 205 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G I +SED+F L+P+ IL RV+RWQ + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FR GG GPV H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++I++ + E KT L + + L ALIIDG ++ F A+RNI +++LP G Sbjct: 121 ELVIIED-AAAEGKTAALAKQVKNLGWKRALIIDGASVNEGFLQASRNIEGLDILPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|237821420|ref|ZP_04597265.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974M2] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G++ G + +S+ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGT RAR S Q+RGGG FGP P + LP+KVR LAL+ S+K Sbjct: 61 GRKPWRQKGTRRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +D L KT AL + + +++ + + L+ARN+PN+ + Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI KL+++++AI +E+ Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206 >gi|291532094|emb|CBK97679.1| LSU ribosomal protein L4P [Eubacterium siraeum 70/3] gi|291558165|emb|CBL35282.1| LSU ribosomal protein L4P [Eubacterium siraeum V10Sc8a] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV ++ G + ++++IF ++P ++ + +R G + R+EV+ Sbjct: 1 MAKISVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LAL+ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + E KTK +V +AL ALI+ +D +A NIP + Sbjct: 121 GSMIVVDSITADEFKTKTIVNMLKALSADKALIVLNS-VDEKVIKSAANIPGVKTTQANT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +K ++ K A+ +E+ + Sbjct: 180 LNVYDILKYNKFIVVKDAVATIEEVY 205 >gi|167749438|ref|ZP_02421565.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702] gi|167657610|gb|EDS01740.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV ++ G + ++++IF ++P ++ + +R G + R+EV+ Sbjct: 1 MAKVSVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KKV+ LAL+ ALS K Sbjct: 61 GKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ + E KTK +V +AL ALI+ +D +A NIP + Sbjct: 121 GSMIVVDSITADEFKTKTIVNMLKALSADKALIVLNS-VDEKVIKSAANIPGVKTTQANT 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ +K ++ K A+ +E+ + Sbjct: 180 LNVYDILKYNKFIVVKDAVATIEEVY 205 >gi|312862390|ref|ZP_07722633.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396] gi|311102033|gb|EFQ60233.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ L KT AL + + +++ + ++ +L+ARN+ N+ + Sbjct: 121 DKFVAVEALSFVAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI ++E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206 >gi|85703988|ref|ZP_01035091.1| 50S ribosomal protein L4 [Roseovarius sp. 217] gi|85671308|gb|EAQ26166.1| 50S ribosomal protein L4 [Roseovarius sp. 217] Length = 205 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + EDIF L+P+ IL RV+RWQ + + G K K RSE +Y+ Sbjct: 1 MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH K+ FR GG GP P H LPKKVR+L L+HALS K + Sbjct: 61 KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID + S KT L + + L AL+IDG Q++ F AA NI +++LP G Sbjct: 121 ELVIID-VASSNGKTGELAKQVKNLGWKRALVIDGAQVNAEFARAAANIEGLDVLPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LVL+K+ +EALE R K Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205 >gi|291537925|emb|CBL11036.1| LSU ribosomal protein L4P [Roseburia intestinalis XB6B4] Length = 198 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 1/198 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 ++G++ G + +++ +F ++ + ++ + Q R G K+K RSEV G K + QK Sbjct: 1 MEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRKPWRQK 60 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG AR S Q+ GG F PVP L KK + AL+ AL+ + + +V+D Sbjct: 61 GTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKFIVVDE 120 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L KTK V L + AL++ +D N +A N+P + +NV+D+L+ Sbjct: 121 LKLDSIKTKNFVQVLNNLKVEKALVVL-NDMDTNVIKSASNVPTVKTAQTNELNVFDVLK 179 Query: 189 CSKLVLSKSAIEALEDRF 206 +V++K A++ +E+ + Sbjct: 180 YDTVVVTKDAVKTIEEVY 197 >gi|18399235|ref|NP_565463.1| ribosomal protein L4 family protein [Arabidopsis thaliana] gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|330251866|gb|AEC06960.1| large subunit ribosomal protein L4 [Arabidopsis thaliana] Length = 300 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N E+KG + ++ D+F + ++ I+ V+RWQ +++ G +K SEV+ TG K Sbjct: 91 IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH + QFRGG GP P + K+VR L L+ AL+ + + Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V D+L KTK +V + + + L+++G +D +LA +N+ +N++P G+N Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL L++S+ A+ + +R Sbjct: 271 VYSILLHDTLLMSRDAVNKIVER 293 >gi|42518430|ref|NP_964360.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533] gi|227888852|ref|ZP_04006657.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200] gi|268318852|ref|YP_003292508.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785] gi|46577154|sp|P61064|RL4_LACJO RecName: Full=50S ribosomal protein L4 gi|41582715|gb|AAS08326.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533] gi|227850689|gb|EEJ60775.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200] gi|262397227|emb|CAX66241.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785] gi|329666693|gb|AEB92641.1| 50S ribosomal protein L4 [Lactobacillus johnsonii DPC 6026] Length = 205 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+ G + ++E+IF ++P + ++ + Q KR G S K RS V Sbjct: 1 MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ND++++D L + KTK L ++S +++ D+N QL+ +N+P + ++PV G Sbjct: 121 NDLIILDQLTLEAPKTKELKAILDNANVSGKVLVVSD--DKNVQLSGKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KLVL++ AI+ +E+ Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEEVL 204 >gi|218779761|ref|YP_002431079.1| 50S ribosomal protein L4 [Desulfatibacillum alkenivorans AK-01] gi|226730651|sp|B8FET4|RL4_DESAA RecName: Full=50S ribosomal protein L4 gi|218761145|gb|ACL03611.1| ribosomal protein L4/L1e [Desulfatibacillum alkenivorans AK-01] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N+ GE I ++++IF ++ + +L V+ Q +R G K RS+V + Sbjct: 1 MAKVEVCNMSGEKVSEIDLADEIFGVEVKGSVLHEVVVMQLANRRAGTVCVKNRSDVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTGRAR RGGG FGP P + +PKKVR AL+ ALS K Sbjct: 61 TRKLYRQKGTGRARKGDIKSPVLRGGGVVFGPHPRDYSYKVPKKVRKAALKMALSSKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+DN+ E KTK A+ + ALI+ + ++N +L+ARN+ + ++P G Sbjct: 121 NSLKVVDNMDLPEIKTKAFAEAMAAMGVDTALIVTTGE-EKNLELSARNVKGVKVMPTAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ L+L++ AIEA+E R Sbjct: 180 LNVYDILKYGNLILAQGAIEAIEGRL 205 >gi|163733827|ref|ZP_02141269.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149] gi|161392938|gb|EDQ17265.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149] Length = 205 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP H L KK R L L HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID++ S KT L + L ALIIDG ++ F AARNI +++LP G Sbjct: 121 ELVIIDDVSSD-GKTSALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|317054767|ref|YP_004103234.1| 50S ribosomal protein L4/L1e [Ruminococcus albus 7] gi|315447036|gb|ADU20600.1| ribosomal protein L4/L1e [Ruminococcus albus 7] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ G +++ IF ++P + ++ ++ +R G + R+EV Sbjct: 1 MSKIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNFLANQRQGTQSTLTRTEVQGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P ++L KK + LA++ A S K Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKEKRLAMKSAFSTKVID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++V++ + +KE KTK +V +A+ +I +D +A NIP + V Sbjct: 121 NNLIVVNEIETKEYKTKVMVDMLKAIGAQGKALIVTADVDAKVVKSAANIPGVKTATVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL K ++S A++ +E+ + Sbjct: 181 LNVYDILNYDKFIVSSEAVKKIEEVY 206 >gi|167771266|ref|ZP_02443319.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM 17241] gi|167666517|gb|EDS10647.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM 17241] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V ++ G+ I +S+ +F + P + + +R G + R+EV+ Sbjct: 1 MPKVQVFDMAGKAVSEIELSDAVFGITPNPVAVHACVVNYLANQRQGTQSTLTRTEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+R GG A GP P + L KK++ LA++ SDK Sbjct: 61 GRKPWRQKGTGHARQGSIRAPQWRKGGIALGPKPRSYRYTLNKKLKRLAIKSVFSDKVAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D++ + KTK +V +AL +I +LD+ +A NIP + V Sbjct: 121 SNLIVVDSIALEGFKTKAVVEMLKALGADKKALILMPELDQKLVKSAANIPGVKTALVNT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD++ C K ++ K A+ LE+ + Sbjct: 181 INVYDLVNCDKFIVCKDAVAKLEEVY 206 >gi|329898793|ref|ZP_08272465.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088] gi|328920745|gb|EGG28207.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088] Length = 205 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V G +SVS+ FA + + ++ +V+ R G K RSEV+ G Sbjct: 1 MELNVLKPGNASAGTVSVSDVAFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R LS+ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNRKMYRAAIRSILSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++++ + KTK LV + L N LI+ +++ N LA+RN+ +++ V+ + Sbjct: 121 RLLVVESMDVEAPKTKLLVKQLGEFGLDNVLIV-ASEVNENLYLASRNLHTVDVRDVESV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ E+ Sbjct: 180 DPVSLIAYDKVVVTVDAVKKFEEML 204 >gi|94987403|ref|YP_595336.1| 50S ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00] gi|166234679|sp|Q1MPR2|RL4_LAWIP RecName: Full=50S ribosomal protein L4 gi|94731652|emb|CAJ55015.1| ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 119/207 (57%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N E+ G I++S IF ++ Q IL V+R Q KR G K R V+ Sbjct: 1 MAIVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGGG FGP P + KK+RSLAL ALS +F Sbjct: 61 GAKPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++VIDN+V E KTK+ V L L ALI+ + + L+ RN+PN+ LL Sbjct: 121 ENLIVIDNIVLPEIKTKHFVGVANILGLHKALIVAPVESTQ-LLLSMRNVPNVKLLTYDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYDIL+ +LVL + A++ +E R K Sbjct: 180 LNVYDILKYKQLVLLEGAVQHIEARLK 206 >gi|126724862|ref|ZP_01740705.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150] gi|126706026|gb|EBA05116.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 90/205 (43%), Positives = 128/205 (62%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG+ G + ++ED+F L+ + IL RV+R+Q +++ G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGKKAGSVDLAEDLFGLEARADILHRVVRYQLAKRQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R+L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHAHDLNKKFRALGLRHALSAKAGAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D V + KT L + L AL+IDG +++ NF A+ NI +++LP G Sbjct: 121 QLVVLDEAVVADGKTGVLAKMVKELGWKRALVIDGAEVNANFAQASANIDGLDVLPSMGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LV++K+ +EALE R Sbjct: 181 NVYDILKRDTLVVTKAGLEALEARL 205 >gi|239636232|ref|ZP_04677236.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri L37603] gi|239598248|gb|EEQ80741.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri L37603] gi|330685172|gb|EGG96836.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU121] Length = 207 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 105/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V +DG G + +S+ +FA++P +L + Q R G K RS V Sbjct: 1 MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+RGGG FGP P + +PKK+R LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYGYKMPKKMRRLALRSALSFKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N V+D KTK L+ +++ D N +L+ARNIP + + QG Sbjct: 121 NGFTVVDAFGFDAPKTKEFKNVLTTLEQPKKVLVVVENEDVNVELSARNIPGVQVTTAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV DI +V++++A + +E+ Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206 >gi|83858565|ref|ZP_00952087.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633] gi|83853388|gb|EAP91240.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633] Length = 212 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LD G I +S+ +F ++ + IL R ++WQ R++ G K+K R E+A T Sbjct: 1 MKLDVVTLDAGKAGSIDLSDAVFGIEEVRADILQRAVKWQLSRRQAGTHKTKERGEIART 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG G ARH S++ F GGG A GP LPKKVR+LAL+HALS K + Sbjct: 61 KKKFGRQKGGGGARHGSRNAPIFVGGGVAHGPRVRSHATELPKKVRALALKHALSTKAGA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D E KTK L +F L SNALIIDG LD NF AARNIP I++LP QG Sbjct: 121 KQLVILDEARLDEAKTKALTEKFSKLGWSNALIIDGETLDENFARAARNIPLIDVLPAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K+A+E + +R Sbjct: 181 LNVYDVLRRDVLVLTKAAVEKINERL 206 >gi|309812335|ref|ZP_07706090.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185] gi|308433640|gb|EFP57517.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185] Length = 214 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + +G+ G + + DIF + ++ +V+ Q R G K+K R EV Sbjct: 1 MTTVDILSPEGKTSGSVELPADIFDVATNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARF 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++++V+ + TK L L++ ++D +L+ RN+PN+++L Sbjct: 121 ERIHVLESVVAGEAPSTKAAAKFLGTLSDRKNLLVVIDRMDSVSELSVRNLPNVHVLWSD 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L + +K+A +A Sbjct: 181 QLNTYDVLCADDIAFTKAAFDAF 203 >gi|269215704|ref|ZP_06159558.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122] gi|269131191|gb|EEZ62266.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ +++ G+ ++ +F ++P ++ +V+R Q R G +K R +V+ Sbjct: 1 MAKIEIKDASGKTVKEADLNAAVFGIEPNVPVMHQVVRSQQAALRQGTHSTKTRGQVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GGG FGP P + +K LA R ALS K Sbjct: 61 GRKPWRQKGTGRARQGTIRAPHWVGGGTVFGPHPRSYAFRVNRKEVKLAERSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ +E TK V +AL L I D L+ RNIPN+ ++PV Sbjct: 121 GQLTVVEGFDFEEPSTKKAVAALKALGLDRRTTIVIGNDDVVTYLSFRNIPNVTVIPVAD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + +I+ LVL+ +A+ LE+ Sbjct: 181 AHTLEIIDNKALVLTVAALNRLEEVL 206 >gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 289 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 76/201 (37%), Positives = 117/201 (58%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 82 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 141 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + + Sbjct: 142 KQKGTGRARHGTLRGCQFRGGATMHGPKPRSHAFKLQKKVRRLGLKIALSARTAEGKLCI 201 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V + +D + L++DG +D+ +LA +N+ +N++P G+NVY Sbjct: 202 FEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGDIDKKLKLATQNLHYVNVIPSIGLNVY 261 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV+++ AI + +R Sbjct: 262 SILQHDTLVMTRDAINRIVER 282 >gi|225850736|ref|YP_002730970.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1] gi|225645048|gb|ACO03234.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N+ E+ G + +S+ +F + ++ + V++WQ +R G + +K R+EV + Sbjct: 1 MEANVVNIKKENVGTVQLSDAVFNTEVKEHTVWEVIKWQLASRRAGTASTKTRAEVRGSR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKGTG ARH + + F GGG GP P +ALPKKVR AL+ LS K Sbjct: 61 RKILPQKGTGNARHGDRKANIFVGGGVVHGPHPRDYYYALPKKVRKKALKGVLSMKLRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ VI++ E KTK + + DL A +++ + D N + RN+P +L V+G Sbjct: 121 ELTVIEDFTFDEPKTKKAIEVLKNFDLDKAKVLLVLAEKDMNVIKSFRNLPKAKVLLVEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YDIL ++++KSA+E + +R Sbjct: 181 LNTYDILNADHVLVTKSAVEKINERL 206 >gi|254460398|ref|ZP_05073814.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium HTCC2083] gi|206676987|gb|EDZ41474.1| ribosomal protein L4/L1 family [Rhodobacteraceae bacterium HTCC2083] Length = 205 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGGKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GPV H LPKKVR+L L+ ALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHDLPKKVRALGLKLALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID + KT L + A+ ALIIDG ++ +F AARNI +++LP G Sbjct: 121 ELVVIDE-AAGAMKTSALAKQVSAMGWKRALIIDGASVNEDFMQAARNIEGLDILPSMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ IEALE R K Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205 >gi|307328031|ref|ZP_07607212.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113] gi|306886336|gb|EFN17341.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDTQVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V + TK T + L++ + D L+ARN+P +++L Sbjct: 121 ERIHVVTGVVDGDISTKAAKTLLGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202 >gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays] gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays] Length = 293 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 86 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 145 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTG+ARH + +QFRGG GP P L KKVR L L+ ALS + +++ Sbjct: 146 PQKGTGKARHGTLRGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLI 205 Query: 126 IDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++L KTK +V R +D S L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 206 FEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 265 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV++++AI + +R Sbjct: 266 SILQHDTLVMTRAAINRIVER 286 >gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114] gi|123172736|sp|Q16AF3|RL4_ROSDO RecName: Full=50S ribosomal protein L4 gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114] Length = 205 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + + E +F L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP H L KK R L L HALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID + S KT L + L ALIIDG ++ F AARNI +++LP G Sbjct: 121 ELVIIDEVSSD-GKTAALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ LV++K+ +EALE R K Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205 >gi|330718971|ref|ZP_08313571.1| 50S ribosomal protein L4 [Leuconostoc fallax KCTC 3537] Length = 207 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 110/203 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +F ++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQATEIELNDAVFGVEPNNAVVTDAVLMQRAALRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + + +K LAL+ ALS K Sbjct: 61 GKKPWKQKGTGRARQGSTRSPQWRGGGVVFGPTPRSYAYRINRKSYQLALKSALSQKVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D L + KTK L + + +++ + + N L+ARN+ N+ ++ +G Sbjct: 121 SKLLVVDALSFETPKTKAFGQVLANLSVDSKVLVIVDEDNDNAILSARNLNNVQVMTAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +SAIE ++ Sbjct: 181 INVLDVVNADKLVIVQSAIEEIQ 203 >gi|313888849|ref|ZP_07822510.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845218|gb|EFR32618.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 207 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++ G + +SE +FA + V++ KR G +K R+EV Sbjct: 1 MPKIQMIDIKGNPVEEVELSEGLFAAPVSTHAVYLVVKNILANKRQGTHSAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG F P + PKK R +AL+ L+ K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAKKPRDYSYTTPKKTRRVALKSVLTSKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++D++ +E KTK + + ++ +++ Q AARNI + Sbjct: 121 GEMILVDSIQMEEAKTKVFANILKNIGAGKKALVVVNDDEKDVQRAARNIAGVKTSRATD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L+ LV++KSA++ +E+ F Sbjct: 181 INVYDLLKYDNLVITKSALDVVEEVF 206 >gi|114771268|ref|ZP_01448688.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255] gi|114548193|gb|EAU51080.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255] Length = 206 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 126/206 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V LD + G I + + +F L+P+ IL RV+R+Q +++ G K K RSE +Y+ Sbjct: 1 MKANVIKLDAKSAGSIDLDDSVFGLEPRADILHRVVRYQLAKRQAGTHKVKTRSETSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++ FRGGG GP H L KK R L L+HALS K + Sbjct: 61 KKIYNQKGTGGARHGDRNAPIFRGGGVYKGPKVRSHAHDLTKKFRKLGLKHALSAKATAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++VID++ +K KT L L LIIDG ++ NF LA+RNI +++LP G Sbjct: 121 ELIVIDSVEAKTSKTADLAKVVTNLGWKKVLIIDGTDVNENFLLASRNIDGLDILPSAGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDIL+ + LVL+K+ EALE R K Sbjct: 181 NVYDILKSNTLVLTKAGAEALEARLK 206 >gi|271962633|ref|YP_003336829.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021] gi|270505808|gb|ACZ84086.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021] Length = 215 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++ G G + + DIF K ++ +V+ Q +R G K+K R EV+ Sbjct: 1 MSTIDVLDVSGAKTGTVDLPGDIFDAKVNIPLIHQVVVAQLAARRQGTHKAKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP+P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPLPRDYSQKTPKKMKAAALRGALSDRANG 120 Query: 121 NDIMVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ LV + KTK + R + + ++++ + D L+ RN P ++LL Sbjct: 121 GRVHVVSALVQGETPKTKAALESLRKITQTRSVLVVVDEGDELTWLSLRNAPEVHLLDAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +V ++ A + + R Sbjct: 181 QLNTYDVLCYDDVVFTQEAYDQVVTRL 207 >gi|144900885|emb|CAM77749.1| 50S ribosomal protein L4 [Magnetospirillum gryphiswaldense MSR-1] Length = 205 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V +LD + G I +S+D+F L + +L R++ +Q ++R G K+KG SE++ T Sbjct: 1 MKTKVISLDNQSVGEIDLSDDVFGLAVRNDLLHRMVSYQLSKRRSGTHKTKGISEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR S +QFRGG FGPV +PKKVR LAL+ ALS K Sbjct: 61 KKPFNQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAFDMPKKVRKLALKVALSAKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L +F+AL ++ L+IDG +D NF LA+RNIP++++LP G Sbjct: 121 KLVVLDNATAAAPKTKALAAQFKALGWASVLVIDGA-VDGNFALASRNIPHVDVLPEVGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K A+ ALE R K Sbjct: 180 NVYDILRRDTLVLTKDAVAALEARLK 205 >gi|294630894|ref|ZP_06709454.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14] gi|292834227|gb|EFF92576.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14] Length = 218 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF ++ ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGEKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVVEGEISTKAAKTLFGKISERKNLLLVADRSDEAAWLSARNLPQVHILEPG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 QLNTYDVLVSDDVVFTKAAFESF 203 >gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group] gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa Japonica Group] gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group] Length = 286 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 116/201 (57%), Gaps = 1/201 (0%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y Sbjct: 79 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 138 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 139 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 198 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V + L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 199 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 258 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV++++AI + +R Sbjct: 259 SILQHDTLVMTRNAINRIVER 279 >gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307] gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307] Length = 205 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ LDG+ G + + E IF L+P+ IL RV+RWQ + G K K RSEV Y+ Sbjct: 1 MKADAIKLDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH ++S FRGGG GP P H L KK R L LRHALS K + Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++DN+ K+ KT L AL LIID ++ +F +AARNI +IN LPV G Sbjct: 121 ELVIVDNIDIKDAKTSALAKTVGALGWKRCLIID-ATVNEDFAVAARNITSINALPVMGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR LVL+K+ +EALE R K Sbjct: 180 NVYDILRSDTLVLTKAGVEALEARLK 205 >gi|301118172|ref|XP_002906814.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4] gi|262108163|gb|EEY66215.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4] Length = 277 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 3 ELSVRNL--DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 EL + +L D +D G IS+ ++F + IL RV+RWQ +R G +K+K RSEV+ + Sbjct: 69 ELKMLSLAEDTQDLGSISMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGS 128 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG+GRAR Q+RGG + GPV ++LPKKVR++ LR ALS K Sbjct: 129 TRKPWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYSLPKKVRAMGLRVALSTKLRE 188 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D+L KTK + +AL + G +++ +F LA RNIP+++ L Sbjct: 189 GKLAIVDSLDVDITKTKDMKKLLGGRGWDHALFVGGEEVESSFVLATRNIPHVDTLAQNK 248 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVY IL+ L+++K A++ LE+R Sbjct: 249 INVYSILQKDLLIITKDAVKYLEERL 274 >gi|116628964|ref|YP_814136.1| 50S ribosomal protein L4 [Lactobacillus gasseri ATCC 33323] gi|238853482|ref|ZP_04643860.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4] gi|282852650|ref|ZP_06261992.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri 224-1] gi|300362388|ref|ZP_07058564.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri JV-V03] gi|311111236|ref|ZP_07712633.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri MV-22] gi|122274038|sp|Q046C4|RL4_LACGA RecName: Full=50S ribosomal protein L4 gi|116094546|gb|ABJ59698.1| LSU ribosomal protein L4P [Lactobacillus gasseri ATCC 33323] gi|238833922|gb|EEQ26181.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4] gi|282556392|gb|EFB62012.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri 224-1] gi|300353379|gb|EFJ69251.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri JV-V03] gi|311066390|gb|EFQ46730.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri MV-22] Length = 205 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+ G + ++E+IF ++P + ++ + Q KR G S K RS V Sbjct: 1 MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++++D L + KTK L ++S +++ D+N QL+ +N+P + ++PV G Sbjct: 121 KDLIILDQLTLEAPKTKELKAILDNANVSGKVLVVSD--DKNVQLSGKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KLVL++ AI+ +E+ Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEEVL 204 >gi|300812351|ref|ZP_07092786.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496656|gb|EFK31743.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 205 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTLDAPKTKDFIAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204 >gi|206901882|ref|YP_002250702.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12] gi|206740985|gb|ACI20043.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12] Length = 209 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V N E G I + E++F ++ + + + R G +K R EV + Sbjct: 1 MIQVPVYNQKAEKVGEIELKEELFGVEKRPDLFYTCVVMHLANGRQGTHSTKRRGEVNRS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR + + GGG+ FGP P + +PKK+R LA+R ALS K Sbjct: 61 GRKVWPQKGTGHARQGDRKAPHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++++D + + KTK LV L + ++I D N + AA N+ + + Sbjct: 121 NALIILDKIELSQPKTKELVNILNNFGLADSKVLIGVPAKDENLKRAAMNLEKVKTMIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ L+L+ AI LE+ F Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207 >gi|224370690|ref|YP_002604854.1| 50S ribosomal protein L4 [Desulfobacterium autotrophicum HRM2] gi|259491553|sp|C0Q9X2|RL4_DESAH RecName: Full=50S ribosomal protein L4 gi|223693407|gb|ACN16690.1| RplD [Desulfobacterium autotrophicum HRM2] Length = 207 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N GE +++++F++ ++ +L V+R Q R+R G +KSKGRSEV+ + Sbjct: 1 MAAVDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S RGGG FGP P +A+PKKVR+LAL+ ALS K + Sbjct: 61 TRKLYRQKGTGNARSGSVKSPLRRGGGVIFGPAPRSYAYAIPKKVRALALKMALSSKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ VID KTK + L L N LI+ DRN L+ARNIP++ ++ +G Sbjct: 121 NELSVIDTFAMDSIKTKEFDSIIDHLGLKNTLIVIDGD-DRNLVLSARNIPDVKVIRTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ L+L +SAI+ +E RF Sbjct: 180 LNVYDILKYDNLLLIESAIKEIEGRF 205 >gi|28377833|ref|NP_784725.1| 50S ribosomal protein L4 [Lactobacillus plantarum WCFS1] gi|254556018|ref|YP_003062435.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1] gi|300767822|ref|ZP_07077732.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180012|ref|YP_003924140.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum ST-III] gi|46577245|sp|Q88XY5|RL4_LACPL RecName: Full=50S ribosomal protein L4 gi|28270666|emb|CAD63572.1| ribosomal protein L4 [Lactobacillus plantarum WCFS1] gi|254044945|gb|ACT61738.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1] gi|300494807|gb|EFK29965.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045503|gb|ADN98046.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 207 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G +++++ +F ++P + ++ + Q R G K RS Sbjct: 1 MTSVALFKQDGTQNGDVTLNDAVFGVEPNENVVFDAILMQRASMRQGTHAVKNRSARRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+R GG FGP P + LPKKV LAL+ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRKGGIVFGPTPRSYSYKLPKKVMRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++ +D+L KTK V L++ ++ + + LA RN+PN+ +L +G Sbjct: 121 NSLVAVDSLAFDAPKTKDFVNVLNNLNVDTKTLVLVEEDNEKAALAGRNLPNVKILKAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D+ KLV+++ A++ LE+ Sbjct: 181 VNVLDVANSDKLVVTQKALDQLEEAL 206 >gi|225869537|ref|YP_002745484.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047] gi|254803754|sp|C0M6G6|RL4_STRE4 RecName: Full=50S ribosomal protein L4 gi|225698941|emb|CAW91969.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047] Length = 207 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++DIF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDDIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206 >gi|313123112|ref|YP_004033371.1| 50S ribosomal protein l4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279675|gb|ADQ60394.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684721|gb|EGD26875.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 205 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK V L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTLDAPKTKDFVAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204 >gi|295099236|emb|CBK88325.1| LSU ribosomal protein L4P [Eubacterium cylindroides T2-87] Length = 209 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N G G + +++ +F ++P Q L L Q +R G + +KGRSEV+ Sbjct: 1 MATIDVINQTGAVVGSMELNDAVFGIEPNQQSLFDALVMQQASRRQGTADTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S +QFRGGG FG P + + KKVR LA++ ALS+K + Sbjct: 61 GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRSYKYTINKKVRRLAVKSALSEKLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR--NFQLAARNIPNINLLPV 178 + V+D E KTK V+ A+ + + + N L+ARNIP + +L Sbjct: 121 QALSVLDKFEISEPKTKTFVSIMEAIKAPKKTLFVVAENEEATNAYLSARNIPGVMMLTS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 GINV+D++ + +V++ +A++ +E+ Sbjct: 181 TGINVFDLVNANAIVMTSAAVKEVEEAL 208 >gi|312880371|ref|ZP_07740171.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260] gi|310783662|gb|EFQ24060.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 96/206 (46%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N G+ G +S+ +F+ + +V+ R+G +K R EV Sbjct: 1 MPRVKQVNFQGDVIGEFELSDAVFSAPVHAPAMHQVVVAHLANCRLGTHDTKDRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG A GP P + KKVR LALR AL+ K Sbjct: 61 GRKPWRQKHTGRARQGSTRSPIWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D KTK ++ + ++ + D +A NIP +L V Sbjct: 121 EVLLVLDRFDLDAPKTKAMLAFLGKVQSGKKPLLVTHESDPRVHKSAANIPGAAVLHVDS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +L+++ A +E+ F Sbjct: 181 LNVYDLLHHDQLIVTAEAARKIEEVF 206 >gi|330470172|ref|YP_004407915.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032] gi|328813143|gb|AEB47315.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032] Length = 216 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N +G G + + DIF ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVDVLNSEGTKTGSVELPGDIFDVQANVPLMHQVVVAQLAAARQGTHKTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ VS ++ TK + + + +++ +D ++ RN P ++L+ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALAALTKVTEARRVLVVLSSVDELNWVSLRNEPRVHLIEAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K A++ Sbjct: 181 QLNTYDVLVADDVVFTKEALDEF 203 >gi|222099968|ref|YP_002534536.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359] gi|254803761|sp|B9K887|RL4_THENN RecName: Full=50S ribosomal protein L4 gi|221572358|gb|ACM23170.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359] Length = 235 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG A GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIID--GCQLDRNFQLAARNIPNINLL 176 N ++V+++L + KTK L + LDL ALI+ + N +L+ +N+PN+ ++ Sbjct: 121 NKLLVLEDLKLERPKTKSLKEILQNLDLADKKALIVLPWKEEGYVNVKLSGKNLPNVKVI 180 Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+D+L+ L+L++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILTRDMVAKIEEVL 225 >gi|77918316|ref|YP_356131.1| 50S ribosomal protein L4 [Pelobacter carbinolicus DSM 2380] gi|109893615|sp|Q3A6P6|RL4_PELCD RecName: Full=50S ribosomal protein L4 gi|77544399|gb|ABA87961.1| LSU ribosomal protein L4P [Pelobacter carbinolicus DSM 2380] Length = 206 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V +++ +S+++F + ++ ++ ++R+Q +R G S +K RS VA Sbjct: 1 MAKIAVYDINRNQVSERELSDEVFNAEVKEYLIHDMVRYQLAARRQGTSAAKNRSAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + F GGG AFGP P L +KV+ ALR ALS +F Sbjct: 61 GKKPYRQKGTGNARQGTIRAPHFVGGGAAFGPSPRDFSFKLNRKVKKAALRSALSARFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++ ++ TK +V +LSN L++ G + +RN +L+ARN+P++ +L +G Sbjct: 121 ERVAVLNDFQLEKIGTKAVVEVLNRFELSNVLVVVG-EDNRNLELSARNLPHVKVLKAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NVYD++ LV+++ A+E LE Sbjct: 180 VNVYDLMNHRNLVVTEGAVEQLE 202 >gi|169335630|ref|ZP_02862823.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM 17244] gi|169258368|gb|EDS72334.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM 17244] Length = 205 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 112/206 (54%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V N+ GE +S++ DIF ++P ++ + ++ +R G +K R+EV G Sbjct: 1 MKADVLNVKGEVVESVSLNNDIFKIEPNMPVVHQYVKAYLANQRQGTQSAKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG AF P P ++ KK++ LA++ S K Sbjct: 61 KKPWRQKGTGRARVGSSRNPVWTGGGVAFAPKPRDYSQSINKKMKRLAMKSVFSAKVNDK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ ++D L KTK +V F L ++ L++ + D+N + RNI + V + Sbjct: 121 ELFILDELKFDAPKTKAMVEVFDNLKINKTLVVI-AENDKNVVNSVRNIKDAKCATVGTL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVY++L+ + L+L+K A+ +E+ +K Sbjct: 180 NVYEMLKYNNLILTKDALTKIEEVYK 205 >gi|225027479|ref|ZP_03716671.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353] gi|224955214|gb|EEG36423.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353] Length = 198 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 1/198 (0%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68 ++G G I +S+ IFA+ + ++ + + Q KR G K+K RSEV G K + QK Sbjct: 1 MEGAQVGTIELSDSIFAVPVNEHLVHQAVVAQLANKRQGTQKAKTRSEVRGGGRKPWRQK 60 Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 GTG AR S Q+ GGG F P P + KK + LA++ L+ K + +V+D Sbjct: 61 GTGHARQGSIRAPQWTGGGVVFAPTPRDYSVKMNKKEKQLAMKSVLTSKVNESKFIVLDE 120 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L E KTK + L + ALI+ + D +A N+P + + INVYDIL+ Sbjct: 121 LKLAEIKTKQIKAVLDNLKVEKALIVT-KEKDDVVVKSANNLPKVATTALNNINVYDILK 179 Query: 189 CSKLVLSKSAIEALEDRF 206 +V++ A+ A+E+ + Sbjct: 180 YDTVVVTSEAVAAIEEVY 197 >gi|300022542|ref|YP_003755153.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888] gi|299524363|gb|ADJ22832.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 111/206 (53%), Positives = 143/206 (69%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V NLD G I ++++IF L+ + ++ R++R+Q+ ++ G ++ RSEVA TG Sbjct: 1 MKAEVTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM QKGTG ARH KS QFRGGGKAFGP P LPKKVR+LALRHALS K + Sbjct: 61 KKMTKQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+VID + E KT L +F L L NALIIDG +L+ F AARNIPNI++LPVQGI Sbjct: 121 EIVVIDK-ATSEGKTGALKAQFAKLSLDNALIIDGAELEPTFARAARNIPNIDVLPVQGI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVL+++A+ ALE RFK Sbjct: 180 NVYDILRRRKLVLTRAAVAALEARFK 205 >gi|325104867|ref|YP_004274521.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145] gi|324973715|gb|ADY52699.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145] Length = 209 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPEGIFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKELARKSALSYKAQG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + AL+ SN ++ + + N LA+RN+P ++ Sbjct: 121 NSILVLEDFNFETPKTKNFLNLLSALNSSNEKTLVVLAEGNENVYLASRNLPKAKVVVAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +KLVL+ +++ LE+ Sbjct: 181 DLNTYDVLDAAKLVLTTGSVKTLEEAL 207 >gi|223983922|ref|ZP_03634082.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM 12042] gi|223964114|gb|EEF68466.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM 12042] Length = 209 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V NL+ ++ I ++E +F ++P Q ++ L Q R G +K R EV+ Sbjct: 1 MPKLNVYNLEAKEIREIELAEAVFGIEPNQQVMFDALIMQRANMRQGTHDTKSRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG AFGP P + L +KVR LALR LS+K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGIAFGPTPRSYAYRLNRKVRRLALRSLLSEKVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALII-DGCQLDRNFQLAARNIPNINLLPV 178 N+++V+D L KTK V A L + D + N ++ RNIPN LL V Sbjct: 121 NNLVVVDALKFDAIKTKEFVKVMDAFKFEGKTLFVADIAEDFDNAFMSLRNIPNAALLTV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N +DI KLV++++A + F Sbjct: 181 EELNAFDIANAQKLVMTEAAANKAGEVF 208 >gi|255554769|ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis] gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4, putative [Ricinus communis] Length = 294 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 117/203 (57%), Gaps = 1/203 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 85 IPVTNFLNEDKGFMVLAGDVFDVPIKKHIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 144 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRARH + QFRGG GP P KKVR L L+ AL+ + + Sbjct: 145 PYRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKCNKKVRRLGLKIALTARAAEGKL 204 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V ++L KTK +V + + + L++DG ++ +LAA+N+ +N+LP G+N Sbjct: 205 LVFEDLEIPTHKTKNIVNYVKQMEETKKLLLVDGGPINEKLKLAAQNLHYVNVLPSIGLN 264 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL LV+S+ A+ + +R Sbjct: 265 VYSILLHDTLVMSRDAVNRIVER 287 >gi|148544695|ref|YP_001272065.1| 50S ribosomal protein L4 [Lactobacillus reuteri DSM 20016] gi|184154048|ref|YP_001842389.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112] gi|194466952|ref|ZP_03072939.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23] gi|227363818|ref|ZP_03847925.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3] gi|227543622|ref|ZP_03973671.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A] gi|300909349|ref|ZP_07126810.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri SD2112] gi|325683029|ref|ZP_08162545.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A] gi|166990950|sp|A5VLK4|RL4_LACRD RecName: Full=50S ribosomal protein L4 gi|226730679|sp|B2G8X7|RL4_LACRJ RecName: Full=50S ribosomal protein L4 gi|148531729|gb|ABQ83728.1| LSU ribosomal protein L4P [Lactobacillus reuteri DSM 20016] gi|183225392|dbj|BAG25909.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112] gi|194453988|gb|EDX42885.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23] gi|227071175|gb|EEI09491.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3] gi|227186462|gb|EEI66533.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A] gi|300893214|gb|EFK86573.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri SD2112] gi|324977379|gb|EGC14330.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A] Length = 207 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ +F ++P + ++ + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTVELNDAVFGVEPNENVVFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P ++LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +V+D L KTK L+++ ++ D+N L+ARN+ N ++ G Sbjct: 121 NSFVVVDALNFDAPKTKEFADVMGNLNVAEKTLVVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ +++ K+V++KSA+ +E+ Sbjct: 181 VNILNVVDNQKIVITKSALSQVEEVL 206 >gi|297159598|gb|ADI09310.1| 50S ribosomal protein L4 [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVIEGEVSTKAAKTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202 >gi|296268551|ref|YP_003651183.1| 50S ribosomal protein L4/L1e [Thermobispora bispora DSM 43833] gi|296091338|gb|ADG87290.1| ribosomal protein L4/L1e [Thermobispora bispora DSM 43833] Length = 216 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 1/205 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + +G G + + E+IF K ++ +V+ Q +R G +K R +V+ G Sbjct: 4 TIDVLDANGAKAGTVELPEEIFGAKVNVPLMHQVVVAQLAARRQGTHATKTRGDVSGGGK 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 64 KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRASCGR 123 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ NL++ KTK + R + + +++ + D + RN+P ++LL + Sbjct: 124 VHVVTNLITGDTPKTKVALAALRKVTQAPRVLVVVDENDELTWRSLRNVPEVHLLDAGQL 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N YD+L +V ++ A E + R Sbjct: 184 NTYDVLVNDDVVFTREAFEQVVARL 208 >gi|104773543|ref|YP_618523.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513540|ref|YP_812446.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275690|sp|Q04C14|RL4_LACDB RecName: Full=50S ribosomal protein L4 gi|122397384|sp|Q1GBL7|RL4_LACDA RecName: Full=50S ribosomal protein L4 gi|103422624|emb|CAI97232.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092855|gb|ABJ58008.1| LSU ribosomal protein L4P [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125176|gb|ADY84506.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 205 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + +G + G +++++++F+++P + ++ + Q KR G SK K RS V Sbjct: 1 MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P +++P+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KT+ V L L +++ D+N QL+A+N+P + ++PV G Sbjct: 121 QNLVVLDKLTMDAPKTRDFVAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D + KLVL++ ++ +E+ Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204 >gi|229821622|ref|YP_002883148.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333] gi|229567535|gb|ACQ81386.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333] Length = 221 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 101/200 (50%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + D+F ++ ++ +V+ Q R G K+K R EV G Sbjct: 8 TVDVIDAKGKKSGTADLPADVFDVQTNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGK 67 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ ++ Sbjct: 68 KPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARADR 127 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 + V+ V+ TK + + + +++ + D L+ RN+P ++L+ +N Sbjct: 128 VHVVSGFVADAPSTKAALAVLGQVTEAERVLVVLERTDTTAWLSLRNVPAVHLIHPDQLN 187 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V ++ A+E Sbjct: 188 TYDVLVSDDVVFTRGALEQF 207 >gi|225867666|ref|YP_002743614.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus] gi|259491569|sp|C0MCB1|RL4_STRS7 RecName: Full=50S ribosomal protein L4 gi|225700942|emb|CAW97646.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus] Length = 207 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206 >gi|315125263|ref|YP_004067266.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913] gi|315013776|gb|ADT67114.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913] Length = 201 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFGLEAPKTKELVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200 >gi|116513053|ref|YP_811960.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris SK11] gi|123125252|sp|Q02W25|RL4_LACLS RecName: Full=50S ribosomal protein L4 gi|116108707|gb|ABJ73847.1| LSU ribosomal protein L4P [Lactococcus lactis subsp. cremoris SK11] Length = 208 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ +D L KT AL + L++ + + +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207 >gi|260655382|ref|ZP_05860870.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33 E1] gi|260629830|gb|EEX48024.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33 E1] Length = 207 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N GE G + +S+ +F + + +V+ Q R G + +K R EV Sbjct: 1 MPVIKILNFAGEVVGDLELSDAVFGVPFHSSAIHQVVVAQQANARQGTACAKDRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG GP P + KKVR+LA+R ALS + Sbjct: 61 GRKPWRQKHTGRARAGSIRSPLWAGGGVVHGPKPRDYFLKVNKKVRALAMRSALSVRAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++ + TK +++ A+ LI+ + + N +A NI + +L + Sbjct: 121 SRLFAVEGFSLEAPSTKKMLSFLAAVGARKPLIVLDSR-NENVIRSAANIQGVKVLHMDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++R LV + + ++ LE+ + Sbjct: 180 INVLDLVRHDGLVATTAVLKRLEEVY 205 >gi|126322913|ref|XP_001367717.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 426 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 6/211 (2%) Query: 2 IELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 ++ V +L G G+ + D+FA+ P+ IL V WQ KRI +K+K R+EV Sbjct: 195 VQAWVESLQGYEKTRVGLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEVR 254 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDK 117 G K + QKG+GRARH S +RGGG A GP P + LP KVR L L+ AL+ K Sbjct: 255 GGGRKPWRQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVK 314 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINL 175 +D+ ++D+L +YL+ R S L+ ++ +N A N+ INL Sbjct: 315 LMQDDLHIVDSLELPTSDPRYLLDLVRHRYWGDSVLLVDVDEEMPQNIVSAVSNLKTINL 374 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+NV+ +L+ LVL+ + + LE + Sbjct: 375 VPAVGLNVHSMLKHQTLVLTLNTVAFLEKKL 405 >gi|119468279|ref|ZP_01611405.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7] gi|119448272|gb|EAW29536.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7] Length = 201 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFGLEAPKTKDLVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200 >gi|162446958|ref|YP_001620090.1| 50S ribosomal protein L4 [Acholeplasma laidlawii PG-8A] gi|189029489|sp|A9NED4|RL4_ACHLI RecName: Full=50S ribosomal protein L4 gi|161985065|gb|ABX80714.1| large subunit ribosomal protein L4 [Acholeplasma laidlawii PG-8A] Length = 207 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ N GE +++++ IF + P Q +L V+ Q R G +K+K R+EV Sbjct: 1 MPTLNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP+P + +KV+ LAL+ ALS + Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++DN+ E KTK + L L + I+ +D+N LA+ N+P + V Sbjct: 121 ENLVLVDNITVAEPKTKLFIEIMNNLKLDDRSIVLVDSVDKNLLLASNNLPGAVVREVSQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++VY++L+ ++VL++ A++ E+ Sbjct: 181 VSVYELLKFKQVVLTQGAVKYYEEVL 206 >gi|119502925|ref|ZP_01625010.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080] gi|119461271|gb|EAW42361.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080] Length = 205 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G +SVSE FA + + ++ +V+ R G K RSEVA G Sbjct: 1 MELNIVKPGNAAGGTVSVSEATFAREYNEALVHQVVTAYLAGGRQGTRAQKTRSEVAGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P H + KK+ A+R LS+ ++ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQDHSHKVNKKMYRAAMRSILSELARTD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ ++ KTK L+ + + DL N LI+ G +D+N LAARN+ + + V Sbjct: 121 RLVVVESFDMEQPKTKLLLQQLKGFDLENVLIV-GNVVDQNLYLAARNLHKVEVCDVDAA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ E+ Sbjct: 180 DPVSLIAFDKVMVTVDAVKKFEEAL 204 >gi|302536252|ref|ZP_07288594.1| 50S ribosomal protein L4 [Streptomyces sp. C] gi|302445147|gb|EFL16963.1| 50S ribosomal protein L4 [Streptomyces sp. C] Length = 216 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNLLLVAERSDELAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A+E+ Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202 >gi|256847764|ref|ZP_05553209.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN] gi|256715453|gb|EEU30429.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN] Length = 207 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N DG G I +++ IF ++ + + Q R G K RS V Sbjct: 1 MTSVALFNQDGSQNGNIDLNDAIFGVEVNENAEYESIIRQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYNYRLPRKVRQLAIKSALSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D++ KTK + L ++ ++I D+N L+ARN+ +N++ G Sbjct: 121 DKFVVVDSINFDAPKTKEFASVLDNLKVNEKVLIVVTDDDKNAGLSARNLSKVNVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ +++ K+V++KSA+ +E+ Sbjct: 181 VNILNVVDAQKIVITKSALSQVEEVL 206 >gi|192359371|ref|YP_001981209.1| 50S ribosomal protein L4 [Cellvibrio japonicus Ueda107] gi|226730635|sp|B3PK38|RL4_CELJU RecName: Full=50S ribosomal protein L4 gi|190685536|gb|ACE83214.1| ribosomal protein L4/L1 family [Cellvibrio japonicus Ueda107] Length = 204 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G G ++VSE F + Q ++ + + R G K R+EV+ G Sbjct: 1 MELKIVNPGGAQ-GTVNVSEVAFGREFNQDLVHQAVVAYMAGARQGTKAQKTRAEVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F P L +K+ AL+ LS+ + Sbjct: 60 KKPWRQKGTGRARAGTIRSPIWRGGGVTFAAKPRDFEQKLNRKMYRAALQCILSELNRQD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK LV + DL++ALI+ L N LA+RN+ + + VQG+ Sbjct: 120 RLIVVESFDVDAPKTKALVQKLAQYDLTDALIVT-EDLSENLYLASRNLHKVGVSDVQGV 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ E+ Sbjct: 179 DPVSLIGYDKVVVTVPALKKFEEIL 203 >gi|167645579|ref|YP_001683242.1| 50S ribosomal protein L4 [Caulobacter sp. K31] gi|189029494|sp|B0T2C3|RL4_CAUSK RecName: Full=50S ribosomal protein L4 gi|167348009|gb|ABZ70744.1| ribosomal protein L4/L1e [Caulobacter sp. K31] Length = 212 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 102/206 (49%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V NLDG G + + + IF + + IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R++ALRHALS K S Sbjct: 61 GKKMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V+D V + KT L F + L NAL+I G ++D NF+LAARNIPNI++LP G Sbjct: 121 GSIIVLDTAVLTDPKTAALRANFDKIGLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRHTLVLTKDAVEAISARF 206 >gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] Length = 215 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V N + EDKG ++++ DIF + ++ I+ V++WQ ++R G +K R EVA + K Sbjct: 6 LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 ++ QKGTG+ARH S+ QFRGGG A GP P + L KKVR L L+ ALS + + Sbjct: 66 IHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGIN 182 M+ DN+ KT+ L+ L LI+DG + + R LA RN+ +N++P +G+N Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S +A+ +EDR Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209 >gi|295838405|ref|ZP_06825338.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74] gi|302519660|ref|ZP_07272002.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78] gi|197695798|gb|EDY42731.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74] gi|302428555|gb|EFL00371.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78] Length = 216 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPRVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|220930966|ref|YP_002507874.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168] gi|254803739|sp|B8D0C5|RL4_HALOH RecName: Full=50S ribosomal protein L4 gi|219992276|gb|ACL68879.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168] Length = 209 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G G I +++++F + + ++ +V+ Q R G + +K R EV+ Sbjct: 1 MPQVAKYDTTGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P + +PKKV+ LALR LS K + Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++D L KTK +V L+L ++I D N L+ARNIP + L V Sbjct: 121 EELIILDELKFDTPKTKQVVELLSNLNLEGKKVLIILPDKDANIYLSARNIPGVKTLVVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N +D+L +V+S+ A++ +E+ Sbjct: 181 ALNAFDLLNNDCIVMSEEAVKRVEEVL 207 >gi|15674080|ref|NP_268255.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403] gi|281492758|ref|YP_003354738.1| 50S ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis KF147] gi|46577289|sp|Q9CDW3|RL4_LACLA RecName: Full=50S ribosomal protein L4 gi|12725152|gb|AAK06196.1|AE006438_10 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403] gi|281376410|gb|ADA65896.1| LSU ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis KF147] gi|326407631|gb|ADZ64702.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis CV56] Length = 208 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ +D L KT AL + L++ + + +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFTAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLANVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207 >gi|94266252|ref|ZP_01289959.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1] gi|93453178|gb|EAT03642.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1] Length = 207 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + N E G I +++ + L+ +L ++R Q +R G + +K R EV+ + Sbjct: 1 MAVTEIYNTSKEKVGEIDLNDQLVKLEVNPHLLHDIVRMQRANRRAGTAATKTRKEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR ++ +RGGG FGP P +P+K R L LR A+S ++ Sbjct: 61 SKKPWRQKGTGRARAGTRKSPVWRGGGTVFGPQPRDYSFRMPRKARRLGLRMAISARYQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+++ E KTK V + NALI+ +L N + ++RN+P +LP +G Sbjct: 121 DMLLVLEDFQLDEIKTKKFVEVMDNFAIDNALIVVAERL-ENLERSSRNVPGFKVLPAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL ++L K ++ LE+R Sbjct: 180 LNVYDILLHKHIILLKPSVGQLEERL 205 >gi|290958150|ref|YP_003489332.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22] gi|260647676|emb|CBG70781.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22] Length = 219 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF ++ ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKVSIPLIHQVVVAQNAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ + + TK + F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVIEGENPSTKAAKSLFGKISERKNLLLVVERADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V ++ A+E+ Sbjct: 181 GQLNTYDVIVSDDVVFTQGALESF 204 >gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus] gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus] Length = 312 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ + + E GV+ + D+F++ + IL V WQ KRI +K K R+EV G K Sbjct: 87 SLGSYESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKSRAEVRGGGGKP 146 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K + + Sbjct: 147 WKQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKIALTAKLAQDYL 206 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGI 181 VID L YL + ++++I G + N A N+ +N++P G+ Sbjct: 207 HVIDTLEIPTPDPHYLEELLKHRQWGDSVLIVDVGEEFSHNVLQATANLKTVNIIPAIGL 266 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ LVL+ A++ LE + Sbjct: 267 NVHSMLKHESLVLTLEAVKFLEKKL 291 >gi|318058127|ref|ZP_07976850.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actG] gi|318076020|ref|ZP_07983352.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actF] Length = 216 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ ++ E TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLIAERSDEAAWLSARNLPRVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|125625142|ref|YP_001033625.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris MG1363] gi|166234678|sp|A2RNQ4|RL4_LACLM RecName: Full=50S ribosomal protein L4 gi|124493950|emb|CAL98945.1| 50S ribosomal protein L4 (BL4) [Lactococcus lactis subsp. cremoris MG1363] gi|300071950|gb|ADJ61350.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris NZ9000] Length = 208 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S+ DG G +++++ +F ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVTD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ +D L KT AL + L++ + + +L+ARN+ N+ + Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL++ +SA+ +E+ Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207 >gi|307110022|gb|EFN58259.1| hypothetical protein CHLNCDRAFT_142203 [Chlorella variabilis] Length = 322 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 8/212 (3%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + +L + G +++ DIF + ++ IL RV+RWQ +++ G K+K RSEV G K Sbjct: 101 VPLYDLSRQPVGTVTLGGDIFDVPIRRDILHRVVRWQLAKRQQGTHKTKTRSEVRGGGRK 160 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG+GR+R + Q+RGGG A GPVP H LPK+VR L L+ ALS K + Sbjct: 161 PRPQKGSGRSRQGTIRAPQWRGGGVAHGPVPRSHEHDLPKRVRRLGLQCALSAKAWERRL 220 Query: 124 MVIDNLVSKECKTKYLVTRFRAL----DLSNALIID----GCQLDRNFQLAARNIPNINL 175 +V+D+L E KTK ++ AL + L+ D G + A N+P ++ Sbjct: 221 LVVDSLQPAEPKTKVMLDNVDALLADAPRRSVLLCDSSKLGEDGGEVLRRTAANLPWVDC 280 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 +P QG+NVY IL+ LVL+K A++ L +R + Sbjct: 281 IPQQGLNVYSILQRDYLVLTKRAVDLLMERLR 312 >gi|320009101|gb|ADW03951.1| ribosomal protein L4/L1e [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGGISTKAAKTLFGKISERSNLLLVVERADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|260905720|ref|ZP_05914042.1| LSU ribosomal protein L4P [Brevibacterium linens BL2] Length = 217 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G G + + +IF ++ ++ +V+ Q R G K+K RSEV G Sbjct: 6 TVDVVDAAGAKTGSVELPAEIFGVQTNVPLIHQVVVAQLAAARQGTHKTKTRSEVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTG AR S Q+ GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 66 KPYRQKGTGNARQGSIRAPQYNGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARLDQ 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ NL++ + TK L ++ + D + + RN+P++++L + Sbjct: 126 VFVVKNLITGEAPSTKQAKLALAGLSDRKNTLVVLDRDDELTERSVRNLPHVHVLTSDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V ++SA+E Sbjct: 186 NTYDVLIADDIVFTESALETF 206 >gi|217967370|ref|YP_002352876.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724] gi|217336469|gb|ACK42262.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724] Length = 209 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V N E G I + E++F ++ + + + R G +K RSEV + Sbjct: 1 MIQVPVYNQKAEKVGEIELKEELFGVERRPDLFYTCVVMHLANGRQGTHSTKRRSEVNRS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR + + + GGG+ FGP P + +PKK+R LA+R ALS K Sbjct: 61 GRKVWPQKGTGHARQGDRKATHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + + KTK LV L + ++I D N + AA N+ + + Sbjct: 121 NNLIILDKIELPQPKTKELVNILNNFGLADSKVLIGVPTKDENLKKAAMNLERVKTMIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L+ L+L+ AI LE+ F Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207 >gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus] gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b [Rattus norvegicus] Length = 294 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV+ G K Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEVSGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 188 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 GLNVYSMLKHQTLVLTLPSVAFLEDKL 273 >gi|145596433|ref|YP_001160730.1| ribosomal protein L4/L1e [Salinispora tropica CNB-440] gi|145305770|gb|ABP56352.1| LSU ribosomal protein L4P [Salinispora tropica CNB-440] Length = 216 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++G G + + DIF + ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVLTVEGTKAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V++ V+ ++ TK + L + +++ D ++ RN P ++L+ Sbjct: 121 DKVHVVEAFVAGEKPSTKAALATLAKLTEARRVLVVLSSTDELNWVSLRNEPRVHLIESG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K A+E Sbjct: 181 QLNTYDVLLADDVVFTKEALEEF 203 >gi|154249816|ref|YP_001410641.1| 50S ribosomal protein L4 [Fervidobacterium nodosum Rt17-B1] gi|171769378|sp|A7HM51|RL4_FERNB RecName: Full=50S ribosomal protein L4 gi|154153752|gb|ABS60984.1| ribosomal protein L4/L1e [Fervidobacterium nodosum Rt17-B1] Length = 223 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 15/221 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N+ GE G I +++++F ++P ++ R + Q R G + +K R EVA Sbjct: 1 MAQVTLYNIKGEKIGNIEIADEVFNVEPNLDVMWRYIDMQLTNSRAGTASTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG A GP P + L KK++ LAL+ ALS +F Sbjct: 61 GRKPWPQKHTGRARQGSIRAIHWRHGGVAHGPKPRNYLKRLNKKMKKLALKSALSARFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIID--GCQLDRNFQLAARNIPNINLL 176 +++V+ ++ ++ +TK + + L + L + ++ N +L+ RNIP + ++ Sbjct: 121 GNLIVVSDIRFEKAQTKQMREVLKNLGIADEKVLFVLPRKEEVYENVKLSGRNIPGVKVI 180 Query: 177 PV-----------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYDI+ SK+VL++ + +E+ Sbjct: 181 IADNPNNGNPVNIDGLNVYDIINSSKVVLTEGTVRKIEEVL 221 >gi|304321441|ref|YP_003855084.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503] gi|303300343|gb|ADM09942.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503] Length = 220 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LD G + + +DIF L+P+ IL R + WQ +++ G K+K R EV T Sbjct: 1 MQIDVLTLDASKAGDLDLRDDIFGLEPRADILHRYVVWQQAKRQQGTHKAKERGEVTGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH ++ QF GGGKA GP H LPKKVR LALRHALS K + Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFVGGGKAHGPRVRSHAHDLPKKVRRLALRHALSAKQGAA 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++ID + KTK L + + L + N+L+ID +D F AARN+ +++LPV G Sbjct: 121 ELIIIDEATVADVKTKVLAEKLQKLGVRNSLVID-QSVDEGFARAARNLDGVDVLPVIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR KL+L+++A+E L R Sbjct: 180 NVYDILRHDKLILTRAAVEGLYARL 204 >gi|195977209|ref|YP_002122453.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226730727|sp|B4U501|RL4_STREM RecName: Full=50S ribosomal protein L4 gi|195973914|gb|ACG61440.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 207 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + +++ IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++L KT AL + +++ + + L+ARN+PN+ + Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +V DI+ KL+++K AI +E+ Sbjct: 181 ASVLDIVSADKLLVTKEAISTIEEVL 206 >gi|77359117|ref|YP_338692.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis TAC125] gi|109893622|sp|Q3IF24|RL4_PSEHT RecName: Full=50S ribosomal protein L4 gi|76874028|emb|CAI85249.1| 50S ribosomal subunit protein L4 [Pseudoalteromonas haloplanktis TAC125] gi|332038836|gb|EGI75278.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis ANT/505] Length = 201 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELAIKDASGG----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + +K+ A++ LS+ Sbjct: 57 KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK LV + + L+L + LI+ ++D N L+ARN+ ++ V GI Sbjct: 117 RLIVVESFALAAPKTKELVAKLKELELKDVLIVT-EEVDENLFLSARNLYKVDTRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200 >gi|227530206|ref|ZP_03960255.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540] gi|227349881|gb|EEJ40172.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540] Length = 207 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ DIF ++P + + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIDLNADIFGIEPNENAEFEAILRQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P ++LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L ++ +++ D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMDNLKVAEKVLVVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ ++ K+V++KSA+ +E+ Sbjct: 181 VNILSVVDSQKIVITKSALSQVEEVL 206 >gi|238061120|ref|ZP_04605829.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149] gi|57547708|gb|AAW52547.1| RplD [Micromonospora sp. ATCC 39149] gi|237882931|gb|EEP71759.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149] Length = 216 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G G + + IF ++ ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVLNVEGAKSGSVELPAGIFDVQANIALMHQVVVAQLAAARQGTHKAKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ VS ++ TK + L + +++ D ++ RN P ++L+ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLAKLTEAPRVLVVLSSSDELNWVSLRNEPRVHLIEAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K A++ Sbjct: 181 QLNTYDVLVADDVVFTKDALDEF 203 >gi|320094579|ref|ZP_08026345.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978494|gb|EFW10071.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str. F0338] Length = 216 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V +L+G+ + + +IF + ++ +V+ Q R G +K R +V+ G K Sbjct: 9 VDVLDLEGKKAATVDLPAEIFDVPTNIPLMHQVVVAQLAAARQGTHSTKTRGQVSGGGRK 68 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG AR S QF GGG GP P PKK++ ALR ALSD+ ++ I Sbjct: 69 PFRQKGTGNARQGSIRAPQFTGGGVVHGPKPRDYEQRTPKKMKRGALRSALSDRARADRI 128 Query: 124 MVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ + TK + RA+ ++ + D+ L+ RN+P +++L V +N Sbjct: 129 HVVTALFEGDKPSTKAALASLRAIVDDRQALVVLERGDQLTALSLRNVPEVHVLWVDQLN 188 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V +++A+E+ Sbjct: 189 TYDVLDADDIVFTQAALESF 208 >gi|239929513|ref|ZP_04686466.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] gi|291437838|ref|ZP_06577228.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] gi|291340733|gb|EFE67689.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672] Length = 219 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF ++ ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ +V + TK + F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVTGVVEGETPSTKAAKSLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204 >gi|88860958|ref|ZP_01135594.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2] gi|88817171|gb|EAR26990.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2] Length = 201 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELTLKDASGA----LEVSEATFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A++ LS+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSQKVNRKMYRGAIKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L + LI+ ++D N L++RN+ +++ V GI Sbjct: 117 RLVVVESFGIEAPKTKQLVAKLKELELKDVLIVT-EEVDENLFLSSRNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ LE+ Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEESL 200 >gi|312884702|ref|ZP_07744403.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367615|gb|EFP95166.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122] Length = 200 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDAAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEEML 199 >gi|239905859|ref|YP_002952598.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1] gi|259491554|sp|C4XLX4|RL4_DESMR RecName: Full=50S ribosomal protein L4 gi|239795723|dbj|BAH74712.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1] Length = 210 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N ++ G + ++ ++F ++ Q +L V+R Q KR G K R+ V+ Sbjct: 1 MANVKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++++D + E KTK + ALI+ + D N +L+ARN+P I ++ Sbjct: 121 DQLVLLDAIAFPEVKTKLMAKVVSDFSWKKALIVL-PESDNNLELSARNLPGIKVVRQDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L +V+ K A +++R Sbjct: 180 LNVYDVLLHDHVVMMKDAALKVQERL 205 >gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Pongo abelii] Length = 311 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKMALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LED+ Sbjct: 248 LNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|323342790|ref|ZP_08083022.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463902|gb|EFY09096.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 209 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + NL+G+ + ++E +F ++P + + Q R G K+K R+EV Sbjct: 1 MPKLDILNLEGKSLRELELNEAVFGIEPNNQTIFEAVVMQQASLRQGTHKTKNRTEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++L +KVR LALR ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYKYSLNRKVRRLALRSALSQKVMD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLD-RNFQLAARNIPNINLLPV 178 +++ V++NL + KTK + AL L+ L + + + N L+ RN+ N +L V Sbjct: 121 SEMSVVENLTVENVKTKEFIAVMDALKLNKKTLFVVSAEENIDNAYLSMRNLSNTMMLDV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALE--DRF 206 QG+NVYDI+ C ++V ++ A A+E + Sbjct: 181 QGLNVYDIVNCDQIVFTEKA--AIEAGEVL 208 >gi|154507863|ref|ZP_02043505.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC 17982] gi|153797497|gb|EDN79917.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC 17982] Length = 216 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V +L G+ G + + IF + ++ +V+ Q R G +K R EVA G Sbjct: 8 NVDVIDLKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGEVAGGGK 67 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTG AR S F GGG GP P PKK++ ALR ALSD+ ++ Sbjct: 68 KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ + TK + RA+ ++ + + L+ RN+P +++L + Sbjct: 128 IHVVTALFEGDKPSTKAALAALRAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +++A+E+ Sbjct: 188 NTYDVLDADDIVFTQAALESF 208 >gi|159039833|ref|YP_001539086.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205] gi|157918668|gb|ABW00096.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205] Length = 216 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++G G + + DIF + ++ +V+ Q R G K+K R EVA Sbjct: 1 MTTVDVHTVEGTTAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRTRA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ V+ ++ TK + L + +++ D ++ RN P ++L+ Sbjct: 121 GKLHVVEAFVAGEKPSTKAALATLAKLTDARRVLVVLSSTDELNWVSLRNEPRVHLIESG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V ++ A++ Sbjct: 181 QLNTYDVLVADDVVFTREALDEF 203 >gi|54307542|ref|YP_128562.1| 50S ribosomal protein L4 [Photobacterium profundum SS9] gi|90415163|ref|ZP_01223112.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK] gi|81615627|sp|Q6LVB5|RL4_PHOPR RecName: Full=50S ribosomal protein L4 gi|46911962|emb|CAG18760.1| putative ribosomal protein L4 [Photobacterium profundum SS9] gi|90323710|gb|EAS40342.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK] Length = 200 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRTGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L + + LDLS+ LI+ G +LD N LAARN+ +++ I Sbjct: 116 RLIVVDNFSVEAPKTKELAAKLKELDLSDVLIVTG-ELDENLFLAARNLYKVDVRDAATI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ +A++ +E+ Sbjct: 175 DPVSLIAFDKIVMTAAAVKQVEEML 199 >gi|315605900|ref|ZP_07880931.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str. F0310] gi|315312182|gb|EFU60268.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str. F0310] Length = 216 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V +L G+ G +S+ IF + ++ +V+ Q R G +K R +VA G Sbjct: 8 NVDVIDLTGKKVGSVSLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGQVAGGGK 67 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTG AR S F GGG GP P PKK++ ALR ALSD+ ++ Sbjct: 68 KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ ++ TK + RA+ ++ + + L+ RN+P +++L + Sbjct: 128 IHVVTALFEGEKPSTKAALAALRAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +++A+E+ Sbjct: 188 NTYDVLDADDIVFTQAALESF 208 >gi|16125498|ref|NP_420062.1| 50S ribosomal protein L4 [Caulobacter crescentus CB15] gi|221234244|ref|YP_002516680.1| 50S ribosomal protein L4 [Caulobacter crescentus NA1000] gi|46577288|sp|Q9A8V2|RL4_CAUCR RecName: Full=50S ribosomal protein L4 gi|254803724|sp|B8H4D5|RL4_CAUCN RecName: Full=50S ribosomal protein L4 gi|13422580|gb|AAK23230.1| ribosomal protein L4 [Caulobacter crescentus CB15] gi|220963416|gb|ACL94772.1| LSU ribosomal protein L1E-L4P [Caulobacter crescentus NA1000] Length = 212 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G + + + IF + + + IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKAGSVDLDDAIFGIDEIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R+LALRHALS K + Sbjct: 61 SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D++ E KT L F + L NAL+I G ++D NF+LAARNIPN+++LP G Sbjct: 121 GSLVVVDSVALTEAKTAALRATFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206 >gi|237806876|ref|YP_002891316.1| 50S ribosomal protein L4 [Tolumonas auensis DSM 9187] gi|259491579|sp|C4L7T1|RL4_TOLAT RecName: Full=50S ribosomal protein L4 gi|237499137|gb|ACQ91730.1| ribosomal protein L4/L1e [Tolumonas auensis DSM 9187] Length = 201 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELVLKDAQ----SALQVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F P + +K+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRGGGVTFAAKPQDHSQKVNRKMYRGAIQSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L+T+ +ALDL + LI+ +++ N LAARN+ +++ V GI Sbjct: 117 RLVVVEKFGVDAPKTKELLTKLQALDLKDVLIVT-PEVEENLFLAARNLYKVDVRDVTGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEML 200 >gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius] Length = 302 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D E G++ + DIFA+ + IL V WQ KRI + +K RSEV G K + QKG Sbjct: 82 DSEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRSEVRGGGRKPWKQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S +RGGG + GP P + LP K+R L+ ALS K + + V+D Sbjct: 142 SGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKIRVQGLKIALSSKLAQDYLHVVDT 201 Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L +YL+ R +++I + N A ++ +N++P G+NV+ + Sbjct: 202 LNIPTPDPEYLMDLIRFRYWGESVLIVDACEEFPENILQATESLKTVNVIPAIGLNVHSM 261 Query: 187 LRCSKLVLSKSAIEALEDRF 206 L+ LVL+ A++ LE++ Sbjct: 262 LKHEVLVLTLEAVKFLENKL 281 >gi|256827415|ref|YP_003151374.1| 50S ribosomal protein L4P [Cryptobacterium curtum DSM 15641] gi|256583558|gb|ACU94692.1| LSU ribosomal protein L4P [Cryptobacterium curtum DSM 15641] Length = 207 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 104/206 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+++ G+ V ++ +F ++P ++ +V+R Q R G + R +V Sbjct: 1 MANIEVKDVSGKKVEVRDLNAGVFGIEPNVHVMHQVVRAQRASWRQGTHDTLTRGQVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+D+ +E KTK +AL ++ + D N LA RN+PN+ ++PV Sbjct: 121 GELFVVDSFGFEEPKTKSAAAALKALGITGRTTLVIGNEDVNTYLAFRNLPNVEVIPVMA 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 N YD + L+ + A+ +E+ Sbjct: 181 GNTYDFVNNKALIFTAEALSRIEEVL 206 >gi|28897032|ref|NP_796637.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633] gi|91229294|ref|ZP_01262911.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01] gi|153840338|ref|ZP_01993005.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810] gi|260877950|ref|ZP_05890305.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034] gi|260897590|ref|ZP_05906086.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466] gi|260899520|ref|ZP_05907915.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037] gi|262392515|ref|YP_003284369.1| 50S ribosomal protein L4p [Vibrio sp. Ex25] gi|269964733|ref|ZP_06178971.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B] gi|46577240|sp|Q87T12|RL4_VIBPA RecName: Full=50S ribosomal protein L4 gi|28805240|dbj|BAC58521.1| ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633] gi|91187419|gb|EAS73767.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01] gi|149745996|gb|EDM57126.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810] gi|262336109|gb|ACY49904.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. Ex25] gi|269830632|gb|EEZ84853.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B] gi|308087513|gb|EFO37208.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466] gi|308090091|gb|EFO39786.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034] gi|308108798|gb|EFO46338.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037] gi|328471835|gb|EGF42712.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus 10329] Length = 200 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199 >gi|301772042|ref|XP_002921423.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Ailuropoda melanoleuca] gi|281337408|gb|EFB12992.1| hypothetical protein PANDA_010325 [Ailuropoda melanoleuca] Length = 294 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + ++F++ P+ IL +V+ WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPEVFSIAPRLDILHQVVTWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GR+RH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WPQKGSGRSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + R+R + L++D + +N AA + NL+P Sbjct: 188 HIVDSLELPTSDPQYLTELARYRRWG-DSVLLVDLAHDDMPQNIVAAASGLKTFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ + LE + Sbjct: 247 GLNVYSMLKHQTLVLTLQTVAFLEQKL 273 >gi|317485821|ref|ZP_07944685.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia 3_1_6] gi|316922927|gb|EFV44149.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia 3_1_6] Length = 206 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + D ++G ++++ ++F + + IL V+R Q KR G +K R+ V+ Sbjct: 1 MAVVKVYDQDKTEQGELTLTPEVFEVAVRPEILHLVVRAQLAAKRAGTHSTKTRAMVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KK+R LALR ALS + Sbjct: 61 GVKPWRQKGTGRARAGSNRSPVWRGGAILFGPQPRKYDFKVNKKIRKLALRMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+ E KTK L LS ALII + RN L++RN+P I L Sbjct: 121 DNLLVVKGFDLPEAKTKVFAKIAGNLGLSKALII-APEESRNLVLSSRNLPGITLTTPDQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ +LVL + A+E +E R K Sbjct: 180 LSVYEILKHKQLVLLEGAVEPVETRLK 206 >gi|119478131|ref|ZP_01618210.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143] gi|119448837|gb|EAW30080.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143] Length = 206 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+ + + G + VS+ FA + + ++ +V+ R G K RS V+ Sbjct: 1 MELATFTVGKKKATGSVEVSDGTFAKEYNEDLVHQVVTSYLAGARQGTRAQKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +R GG F P + +K+ ALR LS+ Sbjct: 61 GKKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRSILSELARQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L KE KTK L+ L AL++ L N LA+RN+ ++ + V+G Sbjct: 121 ERLIVVDELSLKEPKTKLLIKMLGGFGLERALLV-SDDLSENLYLASRNLYKVDAVDVEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N ++ K+V++ A++ E+ Sbjct: 180 VNPVSLVGAEKVVITVPALKKFEEML 205 >gi|260770914|ref|ZP_05879843.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972] gi|260614151|gb|EEX39341.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972] gi|315178960|gb|ADT85874.1| 50S ribosomal protein L4 [Vibrio furnissii NCTC 11218] Length = 200 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGANA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + L+L++ LI+ G ++D N LAARN+ +++ V GI Sbjct: 116 RLIVVEEFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVSGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199 >gi|118470088|ref|YP_885820.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155] gi|166234688|sp|A0QSD2|RL4_MYCS2 RecName: Full=50S ribosomal protein L4 gi|118171375|gb|ABK72271.1| ribosomal protein L4/L1 family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ G + + ++F ++P ++ +V+ Q KR G +K R EV+ G Sbjct: 4 KVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGK 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ ++ Sbjct: 64 KPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDR 123 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV + TK T L + +++ + D + RN+P ++++ + Sbjct: 124 IHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L +V S A+ A Sbjct: 184 NTYDVLNADDVVFSVEALNA 203 >gi|297625783|ref|YP_003687546.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921548|emb|CBL56102.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 233 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 1/199 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N +G+ G + + ++F + ++ +V+ Q R G +K R+EV+ G K Sbjct: 7 IDVVNAEGKKAGSVELPGELFDAQANVPLMHQVVTAQLAAARQGTHSTKTRAEVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S Q+ GGG + GP P PKK+ + ALR ALSD+ I Sbjct: 67 PWRQKGTGRARQGSIRSPQWAGGGISHGPQPREYSQRTPKKMVATALRGALSDRAREGRI 126 Query: 124 MVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ V + TK L +++ + D N L+ RN+ ++++ +N Sbjct: 127 HVVSEFVGGDKPSTKSAAKVIAGLGDYGRVLVVLERSDENNWLSMRNLIGVHVVSWDQLN 186 Query: 183 VYDILRCSKLVLSKSAIEA 201 YD+L +V S+SAI+A Sbjct: 187 TYDVLLADAIVFSESAIKA 205 >gi|253991687|ref|YP_003043043.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783137|emb|CAQ86302.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica] Length = 201 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII G ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMSLEDVLIITG-EVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|240167704|ref|ZP_04746363.1| 50S ribosomal protein L4 [Mycobacterium kansasii ATCC 12478] Length = 225 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ +G I + ++F + ++ +V+ Q R G +K R +V+ G Sbjct: 7 KIDVKTPAGKVEGSIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 66 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 67 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 126 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV+ + TK T L L++ + D + RN+P +++L + Sbjct: 127 IHAVTELVAGQTPSTKSAKTFLATLTDRKQLLVVIGRDDETAAKSVRNLPGVHVLSPDQL 186 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S +A+ A Sbjct: 187 NTYDVLRADDVVFSVAALNA 206 >gi|83648851|ref|YP_437286.1| 50S ribosomal protein L4 [Hahella chejuensis KCTC 2396] gi|109893598|sp|Q2S913|RL4_HAHCH RecName: Full=50S ribosomal protein L4 gi|83636894|gb|ABC32861.1| Ribosomal protein L4 [Hahella chejuensis KCTC 2396] Length = 202 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ +G KG +SVS+ FA + ++ +V+ R G K RS+V+ G Sbjct: 1 MELTI---NGAGKGTVSVSDVAFARDFNEALVHQVVTAYLAGGRQGSKAQKTRSQVSGGG 57 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +RGGGK F P+ + KK+ A++ LS+ Sbjct: 58 KKPWRQKGSGRARAGTIRSPIWRGGGKTFAATPLDHSQKVNKKMYRAAMQSILSELVRQE 117 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + + KTK + + L L N LI+ +D+N LA+RNIP++++ I Sbjct: 118 RLVVVEEMAVEAPKTKQFNAKLKDLGLENVLIVADA-VDQNLYLASRNIPHVDVCDAVAI 176 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N ++ K++++ SA++ +E+ Sbjct: 177 NPVSLIAHDKVLVTVSALKKIEEML 201 >gi|116617330|ref|YP_817701.1| 50S ribosomal protein L4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272469|sp|Q03ZP4|RL4_LEUMM RecName: Full=50S ribosomal protein L4 gi|116096177|gb|ABJ61328.1| LSU ribosomal protein L4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 207 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L + KT+ L ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 NKLVVVDALSFEAPKTQDFKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] Length = 215 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 1/204 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V N + EDKG ++++ DIF + ++ I+ V++WQ ++R G +K R EVA + K Sbjct: 6 LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG+ARH S+ QFRGGG A GP P + L KKVR L L+ ALS + + Sbjct: 66 INKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGIN 182 M+ DN+ KT+ L+ L LI+DG + + R LA RN+ +N++P +G+N Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL LV+S +A+ +EDR Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209 >gi|302869971|ref|YP_003838608.1| 50S ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029] gi|315501432|ref|YP_004080319.1| ribosomal protein l4/l1e [Micromonospora sp. L5] gi|302572830|gb|ADL49032.1| ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029] gi|315408051|gb|ADU06168.1| ribosomal protein L4/L1e [Micromonospora sp. L5] Length = 221 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 6/208 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N++G G + + DIF + ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVDVINVEGAKSGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYKQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN-----IN 174 + V++ VS ++ TK + L + +++ D ++ RN+ N ++ Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLTKLTQARRVLVVLSSTDELNWVSLRNLRNARDSRVH 180 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEAL 202 L+ +N YD+L +V +K A++ Sbjct: 181 LIEAGQLNTYDVLVADDVVFTKEALDEF 208 >gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio] gi|82192851|sp|Q503X2|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio] Length = 302 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 3/200 (1%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D + GV+ + D+F++ + IL V WQ KRI + K R+EV G K + QK Sbjct: 82 DSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKR 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 TGRARH S +RGGG GP P + LP KVR L+ ALS K + + ++D+ Sbjct: 142 TGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDS 201 Query: 129 LVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L +YL + ++++I G + +N A ++ +N++P G+NV+ + Sbjct: 202 LEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSL 261 Query: 187 LRCSKLVLSKSAIEALEDRF 206 L+ LVL+ A++ LE + Sbjct: 262 LKHESLVLTLEAVKFLEKKL 281 >gi|293190258|ref|ZP_06608754.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus F0309] gi|292821074|gb|EFF80027.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus F0309] Length = 216 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + + IF + ++ +V+ Q R G +K R EVA G Sbjct: 8 NVDVIDIKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGEVAGGGK 67 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTG AR S F GGG GP P PKK++ ALR ALSD+ ++ Sbjct: 68 KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ + TK + A+ ++ + + L+ RN+P +++L + Sbjct: 128 IHVVTALFEGDKPSTKAALAALSAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +++A+E+ Sbjct: 188 NTYDVLDADDIVFTQAALESF 208 >gi|114570344|ref|YP_757024.1| 50S ribosomal protein L4 [Maricaulis maris MCS10] gi|122315785|sp|Q0ANQ1|RL4_MARMM RecName: Full=50S ribosomal protein L4 gi|114340806|gb|ABI66086.1| LSU ribosomal protein L4P [Maricaulis maris MCS10] Length = 211 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V+ L +D G I + + +F ++ + +L RV++WQ ++ G K+ GRSE+ T Sbjct: 1 MKIEVKTLAAKDAGAIDLDDAVFGIEEVRSDLLQRVVKWQLAARQQGTHKTLGRSEINRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 + QKG G ARH ++S QF GGGKA GP H LPKKVR+L LRHALS K + Sbjct: 61 KKRFGRQKGGGTARHGARSAPQFVGGGKAHGPRVRSHAHELPKKVRALGLRHALSAKLGA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ID+ +TK L T F L +SNAL+I G +++ NF AARN+P I++LP QG Sbjct: 121 KSLVIIDDAALDAPQTKALRTSFEGLGISNALVISGAEVNENFAKAARNLPCIDVLPAQG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K+A+E + R Sbjct: 181 LNVYDVLRRDTLVLTKAAVEQIHARL 206 >gi|117618764|ref|YP_854840.1| 50S ribosomal protein L4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|330827884|ref|YP_004390836.1| 50S ribosomal protein L4 [Aeromonas veronii B565] gi|166234629|sp|A0KF22|RL4_AERHH RecName: Full=50S ribosomal protein L4 gi|117560171|gb|ABK37119.1| ribosomal protein L4/L1 family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|328803020|gb|AEB48219.1| 50S ribosomal protein L4 [Aeromonas veronii B565] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ + R G RSEV+ G Sbjct: 1 MELVMKDAK----SALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ A+R LS+ Sbjct: 57 KKPWRQKGTGRARAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L+ + + ++L++ LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFGIEAPKTKELIAKLKEMELTDVLIVT-AEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEML 200 >gi|302558993|ref|ZP_07311335.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000] gi|302476611|gb|EFL39704.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000] Length = 219 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF ++ ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ + + TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVIEGETPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204 >gi|302543360|ref|ZP_07295702.1| ribosomal protein L4/L1 family protein [Streptomyces hygroscopicus ATCC 53653] gi|302460978|gb|EFL24071.1| ribosomal protein L4/L1 family protein [Streptomyces himastatinicus ATCC 53653] Length = 217 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPTEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+ +V + TK + +++ + D L+ARN+P +++L Sbjct: 121 SRVHVVTGVVEGDISTKAAKVLLGKISQRKHVLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A+E+ Sbjct: 181 LNTYDVLVSDDVVFTKAALESF 202 >gi|259500893|ref|ZP_05743795.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335] gi|302190654|ref|ZP_07266908.1| 50S ribosomal protein L4 [Lactobacillus iners AB-1] gi|309803686|ref|ZP_07697776.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d] gi|309804951|ref|ZP_07699009.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c] gi|309806704|ref|ZP_07700699.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b] gi|309808465|ref|ZP_07702364.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a] gi|309809135|ref|ZP_07703008.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D] gi|312871314|ref|ZP_07731412.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a] gi|312872623|ref|ZP_07732688.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1] gi|312874014|ref|ZP_07734049.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d] gi|312874786|ref|ZP_07734805.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b] gi|315654025|ref|ZP_07906941.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195] gi|325912358|ref|ZP_08174754.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D] gi|325913218|ref|ZP_08175587.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B] gi|329920653|ref|ZP_08277340.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G] gi|259167587|gb|EEW52082.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335] gi|308164284|gb|EFO66541.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d] gi|308165711|gb|EFO67936.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c] gi|308166884|gb|EFO69068.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b] gi|308168293|gb|EFO70412.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a] gi|308170580|gb|EFO72600.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D] gi|311089531|gb|EFQ47956.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b] gi|311090354|gb|EFQ48763.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d] gi|311091665|gb|EFQ50044.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1] gi|311093328|gb|EFQ51674.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a] gi|315488721|gb|EFU78367.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195] gi|325475829|gb|EGC78999.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D] gi|325477482|gb|EGC80625.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B] gi|328935911|gb|EGG32371.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G] Length = 204 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V + G+ G + +++ IF ++P ++ + Q KR G +K RS V+ G Sbjct: 1 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S Q+RGGG FGP P +P+K R LA++ LS K Sbjct: 61 KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+D L KTK L F A+ +S +++ D+N QL+ +N+P + ++PV G+ Sbjct: 121 NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSD--DKNVQLSGKNLPQVKVVPVNGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV D + KL+L++ AI+ +E+ Sbjct: 179 NVVDAVDYEKLLLTQDAIKRIEEVL 203 >gi|145300934|ref|YP_001143775.1| 50S ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida A449] gi|166234630|sp|A4ST05|RL4_AERS4 RecName: Full=50S ribosomal protein L4 gi|142853706|gb|ABO92027.1| ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida A449] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ + R G RSEV+ G Sbjct: 1 MELVMKDAK----SALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ A+R LS+ Sbjct: 57 KKPWRQKGTGRARAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L+ + + ++L++ LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFGIEAPKTKELIAKLKEMELTDVLIVT-AEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 176 DPVSLIAFDKVLMTAEAVKQIEEML 200 >gi|78357299|ref|YP_388748.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109893592|sp|Q30Z43|RL4_DESDG RecName: Full=50S ribosomal protein L4 gi|78219704|gb|ABB39053.1| LSU ribosomal protein L4P [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 206 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + D ++ G ++++ ++F ++ + IL V+R Q KR G K RS ++ Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KKVR LAL+ ALS + Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV+ + E KTK++V AL L AL++ ++D L+ARNIP I L+ + Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALGLGKALVVT-PEMDDKLVLSARNIPGITLMTPEQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V++IL+ ++LVL + A+E +++R K Sbjct: 180 LSVFEILKHAQLVLLEGAVEPVQERLK 206 >gi|260779502|ref|ZP_05888392.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC BAA-450] gi|260604311|gb|EEX30615.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC BAA-450] Length = 200 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVAGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITAEAVKQVEEML 199 >gi|90409446|ref|ZP_01217510.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3] gi|90309448|gb|EAS37669.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VS+ F + + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVLKDAQ----SALEVSDATFGREFNEALVHQVVVAYAAGARQGTRAQKNRSDVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG F P + +K+ A+R LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWVGGGVTFAARPQDHSQKVNRKMYRGAVRSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++N KTK L + + +DL + LII +LD N LAARN+ +++ VQGI Sbjct: 117 RLIVVENFTVSAPKTKELKAKLKEMDLKDVLIIT-EELDENLFLAARNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ SA++ +E+ Sbjct: 176 DPVSLIAFDKVVVTASAVKKIEESL 200 >gi|73986986|ref|XP_854013.1| PREDICTED: similar to mitochondrial ribosomal protein L4 isoform a [Canis familiaris] Length = 294 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + ++F+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GR+RH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WPQKGSGRSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL R +++++ + +N A + NL+P G Sbjct: 188 HIVDSLELPTSDPQYLTELARYRHWGDSVLLVDLAYENMPQNIVAATTGLKTFNLIPAVG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY +L+ LVL+ + LE++ Sbjct: 248 LNVYSMLKHQTLVLTLQTLAFLEEKL 273 >gi|269837067|ref|YP_003319295.1| 50S ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745] gi|269786330|gb|ACZ38473.1| ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745] Length = 209 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V ++ G++ G I +++ +F ++P ++ + Q R+G +K R EV G Sbjct: 1 MQVPVYDVTGQETGQIELADSVFGIEPNVPVMHQAYVRQMANARLGTHDTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRARH S +RGGG FGP P +P+K+R LA+R LS K ++ Sbjct: 61 RKPWRQKGTGRARHGSIRSPLWRGGGVVFGPHPRKYTQRMPRKMRRLAIRSVLSAKMKAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V++ L E +TK ++ L + + +I + N + A N+ ++ +LP Q Sbjct: 121 QVVVVEGLTELEPRTKAMIQTLARLPKGDARSTLILVDEPRENLRRGANNLEHVRVLPAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N+ D+L+ +L+L++ A++ + Sbjct: 181 YVNMRDVLKYERLLLTREAVDVI 203 >gi|22478084|gb|AAH37064.1| Mrpl4 protein [Mus musculus] Length = 306 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 80 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 139 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 140 WQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 199 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 200 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAV 258 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 259 GLNVYSMLKHQTLVLTLPSVAFLEDKL 285 >gi|283853154|ref|ZP_06370407.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B] gi|283571412|gb|EFC19419.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B] Length = 210 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + ++ G + + ++F ++ Q +L V+R Q KR G K R+ V+ Sbjct: 1 MANIKLYDQGNQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D L E KTK +V L ALI+ D N +L+ARNIP I ++ Sbjct: 121 ASLVLVDTLAVPEVKTKLMVKVTSDFGLKKALIVLPA-SDNNLELSARNIPGIKVVREDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LV+ K A +++R Sbjct: 180 LNVYDILRHDHLVMVKDAALKVQERL 205 >gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus] gi|81881827|sp|Q9DCU6|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus] gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus] gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus] gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus] gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus] Length = 294 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + ++R S+ L++D ++ +N A + + NL+P Sbjct: 188 HIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAV 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 GLNVYSMLKHQTLVLTLPSVAFLEDKL 273 >gi|262273378|ref|ZP_06051192.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886] gi|262222356|gb|EEY73667.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886] Length = 200 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN KTK L+ + + L+L+ ALI+ ++D N LAARN+ +++ GI Sbjct: 116 RLIVVDNFSVAAPKTKELIAKLKELELTEALIVT-AEVDENLFLAARNLYKVDVRDAAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ +A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAAAVKQVEEML 199 >gi|56461023|ref|YP_156304.1| 50S ribosomal protein L4 [Idiomarina loihiensis L2TR] gi|81600116|sp|Q5QXZ1|RL4_IDILO RecName: Full=50S ribosomal protein L4 gi|56180033|gb|AAV82755.1| Ribosomal protein L4 [Idiomarina loihiensis L2TR] Length = 201 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELTLKDAKGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGATFAAKPQNHSQKVNKKMYRGAIKSILSELIRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ E KTK L + + +DL++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLIVVEKFGVDEPKTKQLAAKLKEMDLNDVLIVT-KEVDENLFLASRNLHKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEEVL 200 >gi|295111421|emb|CBL28171.1| LSU ribosomal protein L4P [Synergistetes bacterium SGP1] Length = 207 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + G+ G + +SE +F + +V+ R G K R +V+ Sbjct: 1 MPTIKVVDFSGQSAGEMELSEVVFGAPIHVAAMHQVVVAHLANCRQGTHAVKTRGDVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GG A GP + KKVR LAL ALS K Sbjct: 61 GKKPWRQKHTGRARQGSTRSPLWVHGGVAHGPKMRDYSQKVNKKVRRLALLSALSVKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ + + TK + A+ AL+I N + RNIP L V Sbjct: 121 AQMLVVRGMEMEAPSTKTMKGFMDAIGAEKALVIYSGNG-ENVARSVRNIPGARYLNVAS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L LV++ + LE+ + Sbjct: 180 INVYDLLNSRTLVVTPEVVARLEEVY 205 >gi|159901427|ref|YP_001547674.1| 50S ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779] gi|159894466|gb|ABX07546.1| ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779] Length = 209 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N G+ G + + + IF ++P ++ + + Q R+G +K R EV + Sbjct: 1 MEAKLYNQAGQAIGTLELQDYIFGIEPNIPVMHQAVIRQLANARLGTHSTKTRGEVRGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR + GGG GP P A+P+K+R LA+R ALS K+ N Sbjct: 61 RKLYRQKGTGRARQGAIRAPHHSGGGVVHGPKPRKYTKAMPRKMRRLAVRSALSAKYAEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+ +D+L KTK + + L L + ++ + N L+A N+PN+ L Sbjct: 121 QIIFLDDLSLNAPKTKDFLALLKNLPLVGDKTLVALGEKSDNITLSASNLPNVKTLLAAY 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NV D+L L+L KSA+ +E Sbjct: 181 LNVRDLLTYDTLILPKSALSVVE 203 >gi|148982484|ref|ZP_01816780.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3] gi|145960449|gb|EDK25828.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+LS+ LI+ G ++D N LAARN+ ++ V G+ Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELSDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEEML 199 >gi|15642590|ref|NP_232223.1| 50S ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729002|ref|ZP_01682005.1| ribosomal protein L4 [Vibrio cholerae V52] gi|147673082|ref|YP_001218089.1| 50S ribosomal protein L4 [Vibrio cholerae O395] gi|153827401|ref|ZP_01980068.1| ribosomal protein L4 [Vibrio cholerae MZO-2] gi|227082712|ref|YP_002811263.1| ribosomal protein L4 [Vibrio cholerae M66-2] gi|229507353|ref|ZP_04396858.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286] gi|229509724|ref|ZP_04399205.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33] gi|229513518|ref|ZP_04402982.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21] gi|229516848|ref|ZP_04406294.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9] gi|229521661|ref|ZP_04411079.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80] gi|229524576|ref|ZP_04413981.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis VL426] gi|229527475|ref|ZP_04416867.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)] gi|229606859|ref|YP_002877507.1| 50S ribosomal protein L4 [Vibrio cholerae MJ-1236] gi|254851135|ref|ZP_05240485.1| ribosomal protein L4 [Vibrio cholerae MO10] gi|255744436|ref|ZP_05418388.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101] gi|258620528|ref|ZP_05715566.1| 50S ribosomal protein L4 [Vibrio mimicus VM573] gi|258625741|ref|ZP_05720620.1| 50S ribosomal protein L4 [Vibrio mimicus VM603] gi|261211150|ref|ZP_05925439.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341] gi|262166616|ref|ZP_06034353.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223] gi|262170154|ref|ZP_06037843.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27] gi|262170468|ref|ZP_06038146.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451] gi|262401882|ref|ZP_06078447.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586] gi|298500581|ref|ZP_07010385.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757] gi|46396660|sp|Q9KNY5|RL4_VIBCH RecName: Full=50S ribosomal protein L4 gi|172047550|sp|A5F548|RL4_VIBC3 RecName: Full=50S ribosomal protein L4 gi|254803763|sp|C3LRQ7|RL4_VIBCM RecName: Full=50S ribosomal protein L4 gi|9657182|gb|AAF95736.1| ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628725|gb|EAX61193.1| ribosomal protein L4 [Vibrio cholerae V52] gi|146314965|gb|ABQ19504.1| ribosomal protein L4 [Vibrio cholerae O395] gi|149738674|gb|EDM53016.1| ribosomal protein L4 [Vibrio cholerae MZO-2] gi|227010600|gb|ACP06812.1| ribosomal protein L4 [Vibrio cholerae M66-2] gi|227014484|gb|ACP10694.1| ribosomal protein L4 [Vibrio cholerae O395] gi|229335107|gb|EEO00592.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)] gi|229338157|gb|EEO03174.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis VL426] gi|229341255|gb|EEO06259.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80] gi|229345911|gb|EEO10883.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9] gi|229349395|gb|EEO14351.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21] gi|229353198|gb|EEO18137.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33] gi|229354858|gb|EEO19779.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286] gi|229369514|gb|ACQ59937.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae MJ-1236] gi|254846840|gb|EET25254.1| ribosomal protein L4 [Vibrio cholerae MO10] gi|255737961|gb|EET93354.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101] gi|258581979|gb|EEW06849.1| 50S ribosomal protein L4 [Vibrio mimicus VM603] gi|258587407|gb|EEW12118.1| 50S ribosomal protein L4 [Vibrio mimicus VM573] gi|260839651|gb|EEX66262.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341] gi|261891544|gb|EEY37530.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451] gi|262021562|gb|EEY40274.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27] gi|262026332|gb|EEY45000.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223] gi|262351854|gb|EEZ00985.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586] gi|297540750|gb|EFH76807.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757] gi|327485077|gb|AEA79484.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae LMA3894-4] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGANA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++N + KTK LV + + L+L++ LI+ G ++D N LAARN+ +++ V GI Sbjct: 116 RLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199 >gi|3122740|sp|O06114|RL4_MYCSM RecName: Full=50S ribosomal protein L4 gi|2113890|emb|CAA73669.1| ribosomal protein L4 [Mycobacterium smegmatis] Length = 215 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ G + + ++F ++P ++ +V+ Q KR G +K R EV+ G Sbjct: 4 KVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGK 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKG+GRAR S QF GGG GP P PKK+ + ALR ALSD+ ++ Sbjct: 64 KPYRQKGSGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDR 123 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV + TK T L + +++ + D + RN+P ++++ + Sbjct: 124 IHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L +V S A+ A Sbjct: 184 NTYDVLNADDVVFSVEALNA 203 >gi|261250416|ref|ZP_05942991.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891] gi|260938985|gb|EEX94972.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITADAVKQVEEML 199 >gi|82697333|ref|NP_001032527.1| 39S ribosomal protein L4, mitochondrial [Bos taurus] gi|108864722|sp|Q32PI6|RM04_BOVIN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|81294225|gb|AAI08103.1| Mitochondrial ribosomal protein L4 [Bos taurus] gi|296485803|gb|DAA27918.1| 39S ribosomal protein L4, mitochondrial [Bos taurus] Length = 294 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+F+ P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K +D+ Sbjct: 128 WQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 ++D+L +YL + R+R + L +D + +N A + NL+P Sbjct: 188 HIVDSLELPTTDPQYLMELARYRRWG-DSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAI 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+ +L+ LVL+ + LE++ Sbjct: 247 GLNVHSMLKHQTLVLTLPTVAFLEEKL 273 >gi|317507410|ref|ZP_07965144.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC BAA-974] gi|316254295|gb|EFV13631.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ DG+ G + +IF +L +V+ Q R G K+K R EV+ G Sbjct: 4 TVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKAKTRGEVSGGGK 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S F GGG GPVP PKK+++ ALR ALSD+ Sbjct: 64 KPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGER 123 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I ++D LV+ + TK ++ + L++ + D + RN+P+ ++L + Sbjct: 124 IHIVDELVAGQTPSTKKASAFLDSISIRPRLLVVLGRADEAGLKSVRNLPHAHILTPDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 N YD+L+ +V S A+ + K Sbjct: 184 NTYDVLKSDDIVFSLEALTTFIEHHK 209 >gi|329889130|ref|ZP_08267473.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568] gi|328844431|gb|EGF93995.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568] Length = 212 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 103/206 (50%), Positives = 142/206 (68%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++LSV LDG+ G + +S+ +F + + +LAR + WQ ++R G K + R+E + T Sbjct: 1 MKLSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH S+ QF GG +AFGPV ++LPKKVR+LALRHALS K + Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGYSLPKKVRALALRHALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 D++V+D++ KE KT L F L + ALII G +++ NF LAARNIP+I++LP G Sbjct: 121 GDLVVVDSVSVKEAKTASLRETFGKLGWTKALIIAGPEVETNFGLAARNIPHIDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KLVL+K+A+EA+E RF Sbjct: 181 LNVYDILRADKLVLTKAAVEAIEARF 206 >gi|303246994|ref|ZP_07333270.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ] gi|302491701|gb|EFL51584.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ] Length = 210 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++ G + ++ ++F ++ Q +L V+R Q KR G K RS V+ Sbjct: 1 MANVKVYDQGRQEIGDVELAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRSTVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG GP P + +KVR LALR ALS K Sbjct: 61 GKKPWRQKGTGRARAGSTRSPIWRGGAIVHGPQPRDYGFKVNRKVRLLALRMALSAKLGD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++++D L E KTK++ L ALI+ D N +L+ARN+P I ++ Sbjct: 121 DSLVLVDALSVPEVKTKHMAKVTSDFGLKKALIVL-PASDNNLELSARNLPGIKVVREDM 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LV+ K A +++R Sbjct: 180 LNVYDVLRHDHLVMVKDAALKVQERL 205 >gi|300174030|ref|YP_003773196.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811] gi|299888409|emb|CBL92377.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811] Length = 207 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I + + +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELDDAVFAVEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVTE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L + ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLSNVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|258542028|ref|YP_003187461.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01] gi|256633106|dbj|BAH99081.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01] gi|256636163|dbj|BAI02132.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-03] gi|256639218|dbj|BAI05180.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-07] gi|256642272|dbj|BAI08227.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-22] gi|256645327|dbj|BAI11275.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-26] gi|256648382|dbj|BAI14323.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-32] gi|256651435|dbj|BAI17369.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654426|dbj|BAI20353.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-12] Length = 204 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ ++ LD G ++ ++IFA+ P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KT L + ++L ++ALI+D +D NF AARN+P I++LP G Sbjct: 121 KLIVLQSASGVD-KTSELAKKLKSLGWTSALIVDAA-VDENFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203 >gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens] gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens] gi|74733471|sp|Q9BYD3|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt; Short=MRP-L4 gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens] gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens] gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens] gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens] Length = 311 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV+ +L+ LVL+ + LED+ Sbjct: 248 LNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|119947125|ref|YP_944805.1| 50S ribosomal protein L4 [Psychromonas ingrahamii 37] gi|166199850|sp|A1T0E1|RL4_PSYIN RecName: Full=50S ribosomal protein L4 gi|119865729|gb|ABM05206.1| LSU ribosomal protein L4P [Psychromonas ingrahamii 37] Length = 201 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVLKDAQ----SALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG F P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARSGTIRSPIWVGGGVTFAARPQDHSQKVNKKMYRGAVKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KT+ L + + LDL + LII +LD N LAARN+ +++ VQGI Sbjct: 117 RLIVVEKFSVEAPKTQELKAKLKELDLKDVLIIT-EELDENLFLAARNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ +E+ Sbjct: 176 DPVSLIAFDKVLVTAAAVKKIEESL 200 >gi|237728654|ref|ZP_04559135.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2] gi|261342789|ref|ZP_05970647.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus ATCC 35316] gi|226909276|gb|EEH95194.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2] gi|288314967|gb|EFC53905.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus ATCC 35316] Length = 201 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVESFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|46579715|ref|YP_010523.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough] gi|120602808|ref|YP_967208.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris DP4] gi|81566853|sp|Q72CH9|RL4_DESVH RecName: Full=50S ribosomal protein L4 gi|166234662|sp|A1VEB5|RL4_DESVV RecName: Full=50S ribosomal protein L4 gi|46449130|gb|AAS95782.1| ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough] gi|120563037|gb|ABM28781.1| LSU ribosomal protein L4P [Desulfovibrio vulgaris DP4] gi|311233506|gb|ADP86360.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris RCH1] Length = 206 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G I+++ ++F ++ + IL V+R Q R G +K R+ V+ Sbjct: 1 MAVVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KKVR LALR ALS + Sbjct: 61 GLKPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+ E KTK L L ALII + + L+ RNIP I + + Sbjct: 121 SNLLVVKGFELPEVKTKLFAKIADTLGLDKALII-APEENTTLALSVRNIPGITIATPEQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ +LVL + A+ +++DR K Sbjct: 180 LSVYEILKHKQLVLVEGAVASVQDRLK 206 >gi|261367802|ref|ZP_05980685.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile DSM 15176] gi|282570600|gb|EFB76135.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile DSM 15176] Length = 206 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++G+ + +S+ +F + P + + + +R G +K R EV Sbjct: 1 MAQFDVVDMNGKKVSTVELSDAVFGITPNEKAVHEAVVNFLANQRQGTQNTKIRKEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KKV+ LAL ALSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYYYTINKKVKRLALLSALSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++++D + + KTK +V A+ +I LD F +A NIP + G Sbjct: 121 GNLIIVDKIAADAYKTKTVVAFLAAVGAGKKNLIVNDALDEKFVKSAANIPGVKT-AATG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD++ KL+LS A + LE+ + Sbjct: 180 VNTYDVVNADKLILSVDAAKKLEEVY 205 >gi|194213187|ref|XP_001493119.2| PREDICTED: similar to Mitochondrial ribosomal protein L4 [Equus caballus] Length = 326 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 100 SLRGYEQERVGLTELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKP 159 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ ALS K +D+ Sbjct: 160 WPQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALSVKLAQDDL 219 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQ 179 V+D+L + +YL + R+R + L++D + + A + NL+P Sbjct: 220 HVVDSLELPSAEPQYLAELARYRRWG-DSVLLVDLEHEDMPPSIVAATSCLKTFNLVPAI 278 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+ +L+ LVL+ + LED+ Sbjct: 279 GLNVHSMLKHQTLVLTLRTVAFLEDKL 305 >gi|326692236|ref|ZP_08229241.1| 50S ribosomal protein L4 [Leuconostoc argentinum KCTC 3773] Length = 207 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKSYQLALKSVLSQKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L + ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|254785080|ref|YP_003072508.1| 50S ribosomal protein L4 [Teredinibacter turnerae T7901] gi|259491576|sp|C5BQ62|RL4_TERTT RecName: Full=50S ribosomal protein L4 gi|237685352|gb|ACR12616.1| ribosomal protein L4 [Teredinibacter turnerae T7901] Length = 204 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ G G ++VSE F + Q ++ + + R G K R+ V+ G Sbjct: 1 MELSIVTPQGAK-GTVAVSEVAFGKEFNQDLVHQAVVAYMAGSRQGTKAQKNRAAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P L KK+ ALR LS+ Sbjct: 60 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPRDFEQKLNKKMYRAALRCILSELARQE 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + DL++ALI+ Q+ N LAARN+ +++ VQ I Sbjct: 120 RLVVVEEFDLDAPKTKILVQKLAEYDLTDALIV-SEQVSENLYLAARNLHKVDVRDVQAI 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K+V++ SA++ LE+ Sbjct: 179 DPVSLIRFEKVVMTVSAVKKLEEVL 203 >gi|126666812|ref|ZP_01737789.1| Ribosomal protein L4 [Marinobacter sp. ELB17] gi|126628857|gb|EAZ99477.1| Ribosomal protein L4 [Marinobacter sp. ELB17] Length = 201 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G +G I+VSE FA + ++ +V+ R G K RSEV G Sbjct: 1 MELTIT---GSGQG-ITVSEATFAKDFNEALVHQVVVAYMAAGRQGTKAQKTRSEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R LS+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPRSYEQKVNRKMYRAAMRSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ KTK + + LSN LI+ LD+N LA+RN+P++++ V G+ Sbjct: 117 RLIVVDDFSIDTPKTKAFTAKLADMGLSNVLIL-SENLDQNLHLASRNVPHVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLVAHEKIVVTVPALKKIEEML 200 >gi|329298532|ref|ZP_08255868.1| 50S ribosomal protein L4 [Plautia stali symbiont] Length = 201 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAACARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVESFSVEAPKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200 >gi|323492120|ref|ZP_08097282.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546] gi|323313681|gb|EGA66783.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546] Length = 200 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEEML 199 >gi|295688907|ref|YP_003592600.1| 50S 50S ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756] gi|295430810|gb|ADG09982.1| ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756] Length = 212 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 134/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V LDG G + + + IF + + IL RV+ WQ ++R G K + R+EV+ T Sbjct: 1 MKLDVIKLDGGKAGSVDLDDAIFGIDDIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG ARH S+ +QF GG KA GPV LPKK+R+LAL+HALS K S Sbjct: 61 SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALKHALSSKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ V + KT L F + L NAL+I G ++D NF+LAARNIPN+++LP G Sbjct: 121 GSLVVLDSAVLTDPKTAALRANFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR LVL+K A+EA+ RF Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206 >gi|126657989|ref|ZP_01729141.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110] gi|126620627|gb|EAZ91344.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110] Length = 210 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGEEVGQATLELKVAKDETASHLLHRAVVRHLANARQGTASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+ + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFGLKMNRKERRLALRTAIGSRA-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + KTK L + + + + + D N L+ARNI + ++ Sbjct: 119 EDMIVVENFAEQLPQPKTKELASALGRWGVEPNQKVALVLVETDENIYLSARNICYLKIM 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ A+ +++ + Sbjct: 179 RADSLNVYDLLDADKIVITSEALTKIQEVY 208 >gi|59710844|ref|YP_203620.1| 50S ribosomal protein L4 [Vibrio fischeri ES114] gi|197334113|ref|YP_002154997.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11] gi|75431860|sp|Q5E8B4|RL4_VIBF1 RecName: Full=50S ribosomal protein L4 gi|226731442|sp|B5FG10|RL4_VIBFM RecName: Full=50S ribosomal protein L4 gi|59478945|gb|AAW84732.1| 50S ribosomal subunit protein L4 [Vibrio fischeri ES114] gi|197315603|gb|ACH65050.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11] Length = 200 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ + Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ +E+ Sbjct: 175 DPVSLVAFDKVLMTAAAVKQVEEML 199 >gi|320526870|ref|ZP_08028060.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204] gi|320132838|gb|EFW25378.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204] Length = 209 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 108/208 (51%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N + + I +S+ +F ++P Q + + R G + R+EV+ T Sbjct: 1 MAKIDVFNQEAKAVKSIELSDAVFGIEPNQQAMYDAILVYQAGLRQGTHATLTRAEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+R GG AFGP P L +KVR LALR ALS+K Sbjct: 61 GKKPFRQKGTGRARQGSTRATQWRHGGIAFGPQPRKYDFKLNRKVRQLALRSALSEKLQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLD-RNFQLAARNIPNINLLPV 178 + + V++NL E KTK V A L + D N ++ RNIPN ++ V Sbjct: 121 SSLTVLENLSFDEIKTKKAVALMNAFGFDRKTLFVAEADEDFDNAYVSMRNIPNALVVTV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDI+ K+V ++ A E + F Sbjct: 181 SSLNVYDIVNADKVVFTEKAAEKAGEVF 208 >gi|170017942|ref|YP_001728861.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20] gi|226730683|sp|B1MW13|RL4_LEUCK RecName: Full=50S ribosomal protein L4 gi|169804799|gb|ACA83417.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20] Length = 207 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 107/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKAYQLALKSVLSQKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L + ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLTNVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|163804108|ref|ZP_02197892.1| 50S ribosomal protein L4 [Vibrio sp. AND4] gi|269959692|ref|ZP_06174072.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3] gi|323495505|ref|ZP_08100579.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326] gi|159172078|gb|EDP57033.1| 50S ribosomal protein L4 [Vibrio sp. AND4] gi|269835615|gb|EEZ89694.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3] gi|323319386|gb|EGA72323.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326] Length = 200 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199 >gi|269925832|ref|YP_003322455.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798] gi|269789492|gb|ACZ41633.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798] Length = 223 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V NL+G+ + VS+ +F ++P ++ + L Q R G ++ R+EV+ G Sbjct: 1 MQLPVYNLNGDIVSQLEVSDLVFGIQPNLAVMHQALVRQLANARTGTHDTRTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S Q+RGGG FGP P +P+K+R LALR ALS K Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWRGGGVVFGPHPRSYEQRMPRKMRRLALRSALSQKVAEE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ L E +TK ++ L L ++I + + Q A N+PN+ ++ Sbjct: 121 RLLVVTGLSEIEPRTKAMIAALEKLGLAGQKVLIATNGRNESVQKAGSNLPNVKVIHASN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ D+L+ L L A+ +L++ Sbjct: 181 LNIADLLKYDYLFLEDGAVNSLQEIL 206 >gi|309789666|ref|ZP_07684247.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6] gi|308228402|gb|EFO82049.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6] Length = 220 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 3/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ N GE G I+++E IF ++P ++ + + Q R+G ++GR EV+ + Sbjct: 1 MEATLYNQAGEQIGSIALNESIFGIEPNVPVMHQYVVMQRANARLGTHNTRGRGEVSGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S GGG A GP P +PKK+R LA+R ALS K +N Sbjct: 61 KKLYRQKGTGRARQGSIRAPHRMGGGIAHGPHPRSYRLNMPKKMRRLAVRSALSAKLAAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR---NFQLAARNIPNINLLPV 178 I +D L ++ +TK +V +A LS +I Q + N +L+A N+P++ +L Sbjct: 121 QIRFVDALTLEKPRTKDMVAFLKAHTLSGKTLIVIDQKNAQTGNVRLSANNLPDVQILLA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L C +VL K+A+ +E Sbjct: 181 HYLNVRDLLTCDTVVLPKAAVAVIE 205 >gi|302553543|ref|ZP_07305885.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736] gi|302471161|gb|EFL34254.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736] Length = 218 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF ++ ++ +V+ Q R G K+K R EV Sbjct: 1 MSTVDILSPAGDKAGSVELPAEIFDVEKVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ +V + TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HNRIHVVSGVVEGENPSTKSAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|317049839|ref|YP_004117487.1| 50S ribosomal protein L4/L1e [Pantoea sp. At-9b] gi|316951456|gb|ADU70931.1| ribosomal protein L4/L1e [Pantoea sp. At-9b] Length = 201 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVESFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200 >gi|227431340|ref|ZP_03913393.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352933|gb|EEJ43106.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 207 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 108/203 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG I +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L K KT+ L L ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 NKLVVVDALSFKAPKTQDLKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|21223083|ref|NP_628862.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)] gi|256785822|ref|ZP_05524253.1| 50S ribosomal protein L4 [Streptomyces lividans TK24] gi|289769714|ref|ZP_06529092.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24] gi|46577292|sp|Q9L0D9|RL4_STRCO RecName: Full=50S ribosomal protein L4 gi|7321293|emb|CAB82071.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)] gi|289699913|gb|EFD67342.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24] Length = 219 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF ++ ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I V+ + + TK T F + L++ + D L+ARN+P I++L Sbjct: 121 HNRIHVVTGVIEGENPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQIHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|330993847|ref|ZP_08317779.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1] gi|329759115|gb|EGG75627.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1] Length = 204 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ LD G S+ ++IFA P+ ILARV+ WQ ++R G K KG E++ T Sbjct: 1 MDYEIKTLDNGSAGTASLPDEIFAATPRPDILARVVHWQLAKRRAGTHKVKGMGEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLIFALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + K+ L + + L ++ALI+D ++ NF AARN+P I++LP G Sbjct: 121 KLVVLDA-ATASGKSAELAKKLKVLGWTSALIVDAA-VEENFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203 >gi|323340375|ref|ZP_08080632.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644] gi|323092151|gb|EFZ34766.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644] Length = 207 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ +F ++P ++ + Q R G K RS V Sbjct: 1 MPTVALFKQDGTQNGDVQLNDAVFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG FGP P + LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L + KTK LD+ + +++ ++ LAARN+ N+ ++P +G Sbjct: 121 NSLVVVDALTFEAPKTKAFAEVLNNLDVKSKVLVVLEDDNKTAALAARNLANVTVIPAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ KLV++K A+ +E+ Sbjct: 181 LNVLDVVNNDKLVITKGALSQVEEVL 206 >gi|319948722|ref|ZP_08022843.1| 50S ribosomal protein L4 [Dietzia cinnamea P4] gi|319437624|gb|EFV92623.1| 50S ribosomal protein L4 [Dietzia cinnamea P4] Length = 229 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L VR G G + + +IF ++P ++ +V+ Q R G +K R EV+ G Sbjct: 11 KLDVRTPAGSTDGSVELPAEIFGVEPNLPLMHQVVVAQLAAARQGTHSTKTRGEVSGGGR 70 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+++ ALR ALSD+ S Sbjct: 71 KPFRQKGTGRARQGSTRAPAYTGGGTVHGPKPRDYSQRTPKKMKAAALRGALSDRAASER 130 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ V ++ T + L +I + D +A N+ +++ + + Sbjct: 131 IHVVTEFVEGQKPSTSGVRDFLGTLSDRKKFLIVVGREDLAAWRSAANLDHVHPIAPDQL 190 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A++A Sbjct: 191 NTYDVLNADDVVFSVEALDAF 211 >gi|296533988|ref|ZP_06896504.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC 49957] gi|296265654|gb|EFH11763.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC 49957] Length = 206 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LD G I + + +FA P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MQLPVITLDNGQAGEIDLPDALFAAAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV ++L KKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEG 120 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KT + ++ +AL +AL++D Q++ F A RN+ N+N+LP G Sbjct: 121 KLVVLDTAALGADAKTSAMASKVKALGWKSALVVD-AQVEDGFGRAVRNLKNVNVLPSMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ L +++ A++AL++R Sbjct: 180 ANVYDILKHDVLAVTRQAVDALKERL 205 >gi|328675408|gb|AEB28083.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida 3523] Length = 207 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK + +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLKLETPKTKEFKSIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|120402317|ref|YP_952146.1| 50S ribosomal protein L4 [Mycobacterium vanbaalenii PYR-1] gi|119955135|gb|ABM12140.1| LSU ribosomal protein L4P [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ VR G+ G I + ++F ++P ++ +V+ Q KR G +K R EV+ G Sbjct: 7 KIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGGK 66 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ ALR ALSD+ ++ Sbjct: 67 KPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRARNDR 126 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I I +V + TK + L +++ + D L+ RN+P ++++ + Sbjct: 127 IHAITEIVEGQTPSTKSAKSFLATLTDRRQVLVVIGRADEASALSVRNLPGVHVISPDQL 186 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L+ +V S A+ A Sbjct: 187 NTYDVLKADDVVFSVEALNA 206 >gi|260772097|ref|ZP_05881014.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14] gi|260612964|gb|EEX38166.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14] Length = 200 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGANA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSVKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK L + + L+L++ LI+ G ++D N LAARN+ +++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELAAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ +A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199 >gi|224542239|ref|ZP_03682778.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM 15897] gi|224524781|gb|EEF93886.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM 15897] Length = 215 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 118/207 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +++ N +GE + ++E++F ++P + V+ Q R G K K R EV+ Sbjct: 9 MLNIALFNQNGEKLNDLELNENVFGIEPNNQAIFDVVLLQRASLRQGTHKVKNRHEVSGG 68 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + KKV++LALR LS K Sbjct: 69 GKKPWRQKGTGRARQGSIRAPQWRGGGIVFGPTPRSYDFKINKKVKNLALRSVLSQKVID 128 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ +D + + KTK +V + +I +L+ N L+ARN+P + ++ Sbjct: 129 QELVALDAIAFETIKTKNVVNFLGNFENPRKTLIVVDKLEENLVLSARNVPGVKVIEASN 188 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD++ C+KL++++ AI+A+E+ K Sbjct: 189 VNVYDVMDCTKLMMTEKAIKAVEEVLK 215 >gi|255530515|ref|YP_003090887.1| 50S ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366] gi|255343499|gb|ACU02825.1| ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366] Length = 209 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++SLA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKSLARKSALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+++ KTK + AL+L+N ++ + N L++RNI + ++ Sbjct: 121 NNVVVLEDFTFDTIKTKNYINLVSALNLTNEKTLLVLPTQNNNIYLSSRNIQKVKVITAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L C KL+L+ +++ LE+ F Sbjct: 181 QLNTYDVLNCGKLLLTADSVKTLEEAF 207 >gi|146313384|ref|YP_001178458.1| 50S ribosomal protein L4 [Enterobacter sp. 638] gi|166990949|sp|A4WFC7|RL4_ENT38 RecName: Full=50S ribosomal protein L4 gi|145320260|gb|ABP62407.1| LSU ribosomal protein L4P [Enterobacter sp. 638] Length = 201 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|58038854|ref|YP_190818.1| 50S ribosomal protein L4 [Gluconobacter oxydans 621H] gi|81557183|sp|Q5FTY4|RL4_GLUOX RecName: Full=50S ribosomal protein L4 gi|58001268|gb|AAW60162.1| LSU ribosomal protein L4P [Gluconobacter oxydans 621H] Length = 204 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ LD G +++ E+IFA+ P+ I+ARV+ WQ ++R G ++KG E++ T Sbjct: 1 MEYDIKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KT+ + +AL ++ALI+DG +D F A N+P I++LP G Sbjct: 121 KLIVLDA-ANGVTKTREAAAKIKALGWTSALIVDGA-VDEQFARAIANLPKIDVLPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL LV++++ +E L++R Sbjct: 179 NVYDILNHDVLVITRAGLEGLKERL 203 >gi|110004230|emb|CAK98568.1| 50s ribosomal protein l4 [Spiroplasma citri] Length = 208 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + G ISV++ I+ ++P Q + + Q R G K+K R+EV+ G Sbjct: 1 MKLQVLDAKGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQAAMRQGTHKTKTRTEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P + KKVR LA++ ALS K Sbjct: 61 KKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKNYLKHVNKKVRKLAIKSALSLKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +IM+ID + TK +V L + L+I + D ++RNI +N++ Sbjct: 121 KNIMIIDQFGIDKPSTKAMVEVLNNLKVNGEKLLIITTEGDEVNFKSSRNIEKVNIITST 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 GIN+YD+L +KL++++ A++A+E+ + Sbjct: 181 GINIYDLLNANKLLVTEQAVKAIEEVY 207 >gi|114319620|ref|YP_741303.1| 50S ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1] gi|122312455|sp|Q0ABH4|RL4_ALHEH RecName: Full=50S ribosomal protein L4 gi|114226014|gb|ABI55813.1| LSU ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1] Length = 205 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +RN G+ G + V++ F + ++ ++ +V+ R G K R+EV G Sbjct: 1 MELQLRNAQGQTDGSVQVADAAFGDRFREALIHQVVVAYLAGARAGTRAQKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + + GGG+AF P + KK+ ALR S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIWVGGGRAFAARPQDHGQKVNKKMYRGALRSIFSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++++ E KT L + L + LI+ ++D+N LAARN+P +++ V G+ Sbjct: 121 RLVVVESIGVDEPKTAKLAAQLEQLGVERPLIV-ADEVDQNLYLAARNLPGVDVRDVPGL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++V++ A+ +E+ Sbjct: 180 DPVALVGAEQVVITVQALRQVEEWL 204 >gi|309389932|gb|ADO77812.1| LSU ribosomal protein L4P [Halanaerobium praevalens DSM 2228] Length = 209 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N G++ + ++E +F K + ++ +V+ Q +R G + +K R +V Sbjct: 1 MPQVTKFNQSGKELEKVELNESVFNDKINKHVVHQVVNAQLAARRGGNASTKTRGKVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P L KK+R LALR L+DK Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWVGGGITFGPSPRSYDKKLTKKMRRLALRSVLTDKVER 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D L + KTK +V L+L ++I + D+N L+ARNIP + L Sbjct: 121 DELILVDKLELDQPKTKAVVNILADLNLEDKKVVIVMPEKDKNLYLSARNIPKVKTLLAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L ++ + A++ +E+ Sbjct: 181 SINAYDLLDNEMVIFIEEAVKMVEEVL 207 >gi|224118096|ref|XP_002331557.1| predicted protein [Populus trichocarpa] gi|222873781|gb|EEF10912.1| predicted protein [Populus trichocarpa] Length = 285 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG++ ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 71 IPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 130 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD-----KF 118 Y QKGTGRARH + QFRGG GP P L KKVR L L+ AL+ +F Sbjct: 131 PYRQKGTGRARHGTLRGPQFRGGAVMHGPKPRSHAFKLNKKVRRLGLKIALTAPIILIEF 190 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + ++V ++L KTK +V + + L++DG ++ +LA +N+ +NLLP Sbjct: 191 LNAQLLVFEDLEVPTHKTKNIVNYVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNLLP 250 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 G+NVY IL+ LV+S+ A+ + +R Sbjct: 251 SIGLNVYSILQHDTLVMSRDAVNKIVER 278 >gi|254038480|ref|ZP_04872536.1| ribosomal protein L4 [Escherichia sp. 1_1_43] gi|226838986|gb|EEH71009.1| ribosomal protein L4 [Escherichia sp. 1_1_43] Length = 201 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K RSEV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|84394647|ref|ZP_00993339.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01] gi|86148880|ref|ZP_01067132.1| 50S ribosomal protein L4 [Vibrio sp. MED222] gi|218710748|ref|YP_002418369.1| 50S ribosomal protein L4 [Vibrio splendidus LGP32] gi|254803764|sp|B7VLF6|RL4_VIBSL RecName: Full=50S ribosomal protein L4 gi|84374729|gb|EAP91684.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01] gi|85833332|gb|EAQ51538.1| 50S ribosomal protein L4 [Vibrio sp. MED222] gi|218323767|emb|CAV20124.1| Ribosomal protein L4 [Vibrio splendidus LGP32] Length = 200 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELIRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V G+ Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEEML 199 >gi|297201730|ref|ZP_06919127.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083] gi|197710895|gb|EDY54929.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083] Length = 218 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G+ G + + +IF ++ +L +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPSGDTAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +N I V+ + + TK T F + L++ + D L+ARN+P +++L Sbjct: 121 NNRIHVVSGVIEGESPSTKAAKTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|134103263|ref|YP_001108924.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] gi|291007944|ref|ZP_06565917.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] gi|166990952|sp|A4FPM4|RL4_SACEN RecName: Full=50S ribosomal protein L4 gi|133915886|emb|CAM05999.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L VR DG+ G + + +IF ++ ++ +V+ Q R G +K R +V+ G Sbjct: 3 VTLDVRTPDGKTDGTVELPAEIFDVQANIALMHQVVVAQLAAGRQGTHATKTRGQVSGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QF GGG GP P PKK++ ALR ALSD+ + Sbjct: 63 KKPYRQKGTGNARQGSIRAPQFTGGGTVHGPQPRDYSQRTPKKMKVAALRGALSDRVRAG 122 Query: 122 DIMVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ ++V ++ TK T R + +++ + + L+ RN+ N++L+ Sbjct: 123 QLHVVSHVVGGEQPSTKQARTAVRTWTEAKRVLVVLNKSEETSWLSLRNLQNVHLIDPSQ 182 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E Sbjct: 183 LNTYDVLVNDDVVFTKAAFERF 204 >gi|296392586|ref|YP_003657470.1| 50S ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985] gi|296179733|gb|ADG96639.1| ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985] Length = 218 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 1/206 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ DG+ G + +IF +L +V+ Q R G K K R EV+ G Sbjct: 4 TVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKVKTRGEVSGGGR 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S F GGG GPVP PKK+++ ALR ALSD+ Sbjct: 64 KPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGGR 123 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + ++D LV+ + TK ++ L++ + D + RN+P+ ++L + Sbjct: 124 VHIVDELVAGQSPSTKKASAFLDSIASRPRLLVVLGRADETGLKSVRNLPHAHILTPDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 N YD+L+ +V S A+ + K Sbjct: 184 NTYDVLKSDDIVFSLEALTTFIEHHK 209 >gi|259502532|ref|ZP_05745434.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041] gi|259169484|gb|EEW53979.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041] Length = 207 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ +F ++P Q + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L+++ ++ + D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALVVVTEDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ ++ K++++KSA+ +E+ Sbjct: 181 VNILNVADAQKVIITKSALSQVEEVL 206 >gi|323189076|gb|EFZ74360.1| 50S ribosomal protein L4 [Escherichia coli RN587/1] Length = 201 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTVDAVKQVEEML 200 >gi|307154841|ref|YP_003890225.1| 50S ribosomal protein L4/L1e [Cyanothece sp. PCC 7822] gi|306985069|gb|ADN16950.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7822] Length = 210 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V+N DG++ G + + + IL R + Q R G + +K RSEV Sbjct: 1 MVNCVVKNWDGDEVGQTPLELKVAKEETASHILHRAVVRQLANARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL+++ Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYNLKMNRKERRLALRTALNNQA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 ++++++N + KT+ L + + + +++ ++ N L+ARNI N+ ++ Sbjct: 119 ENLIIVENFGEQFPQPKTRELASALARWGVTEKDKVLLILSEIPENVGLSARNICNVKVI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L SKLV + A+E + + + Sbjct: 179 KADSLNVYDLLTASKLVATSDALEKILEVY 208 >gi|24114597|ref|NP_709107.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 301] gi|30065380|ref|NP_839551.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T] gi|110807166|ref|YP_690686.1| 50S ribosomal protein L4 [Shigella flexneri 5 str. 8401] gi|46577238|sp|Q83PY4|RL4_SHIFL RecName: Full=50S ribosomal protein L4 gi|123342428|sp|Q0SZY4|RL4_SHIF8 RecName: Full=50S ribosomal protein L4 gi|24053795|gb|AAN44814.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 301] gi|30043642|gb|AAP19362.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 2457T] gi|110616714|gb|ABF05381.1| 50S ribosomal subunit protein L4 [Shigella flexneri 5 str. 8401] gi|281602684|gb|ADA75668.1| 50S ribosomal protein L4 [Shigella flexneri 2002017] gi|313647371|gb|EFS11823.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLQKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|269955436|ref|YP_003325225.1| 50S ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM 15894] gi|269304117|gb|ACZ29667.1| ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM 15894] Length = 232 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + ++F + ++ +V+ Q R G +K R EV G Sbjct: 5 TVDVLDAQGKKAGQAELPAEVFDVVTNVPLIHQVVVAQRAAARQGTHATKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 65 KPYKQKGTGRARQGSTRAPQFAGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRARAGR 124 Query: 123 IMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ TK + L +++ + D L+ RN+P ++LL + Sbjct: 125 VHVVTGFGIDGTPSTKTALQTLSVLSERRHVLVVTERSDEATILSLRNVPTVHLLVADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V ++ A+ A Sbjct: 185 NTYDVLVSDDVVFTQGALAAF 205 >gi|145225624|ref|YP_001136302.1| 50S ribosomal protein L4 [Mycobacterium gilvum PYR-GCK] gi|315445977|ref|YP_004078856.1| 50S ribosomal protein L4P [Mycobacterium sp. Spyr1] gi|145218110|gb|ABP47514.1| LSU ribosomal protein L4P [Mycobacterium gilvum PYR-GCK] gi|315264280|gb|ADU01022.1| LSU ribosomal protein L4P [Mycobacterium sp. Spyr1] Length = 218 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V G+ G + + +F +P ++ +V+ Q KR G +K R+ V+ G Sbjct: 5 TIDVVTPAGKKDGTVELPAALFDAEPNIALMHQVVTAQLAAKRQGTHATKTRAMVSGGGK 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ ++ Sbjct: 65 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPQPRDYSQRTPKKMIAAALRSALSDRARNDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I I +V + TK L +++ + D L+ RN+P ++++ + Sbjct: 125 IHAITEVVEGQSPSTKSAKAFLATLTDRKQVLVVIGRADETSALSVRNLPGVHVISPDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L+ +V S A+ A Sbjct: 185 NTYDVLKADDVVFSVEALNA 204 >gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933] gi|15833438|ref|NP_312211.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. Sakai] gi|16131198|ref|NP_417778.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|16762844|ref|NP_458461.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766728|ref|NP_462343.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26249913|ref|NP_755953.1| 50S ribosomal protein L4 [Escherichia coli CFT073] gi|29144331|ref|NP_807673.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415358|ref|YP_152433.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181943|ref|YP_218360.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74313838|ref|YP_312257.1| 50S ribosomal protein L4 [Shigella sonnei Ss046] gi|82545682|ref|YP_409629.1| 50S ribosomal protein L4 [Shigella boydii Sb227] gi|82778615|ref|YP_404964.1| 50S ribosomal protein L4 [Shigella dysenteriae Sd197] gi|89110691|ref|AP_004471.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. W3110] gi|91212755|ref|YP_542741.1| 50S ribosomal protein L4 [Escherichia coli UTI89] gi|110643558|ref|YP_671288.1| 50S ribosomal protein L4 [Escherichia coli 536] gi|117625597|ref|YP_858920.1| 50S ribosomal protein L4 [Escherichia coli APEC O1] gi|156932233|ref|YP_001436149.1| 50S ribosomal protein L4 [Cronobacter sakazakii ATCC BAA-894] gi|157148899|ref|YP_001456217.1| 50S ribosomal protein L4 [Citrobacter koseri ATCC BAA-895] gi|157156089|ref|YP_001464787.1| 50S ribosomal protein L4 [Escherichia coli E24377A] gi|157162793|ref|YP_001460111.1| 50S ribosomal protein L4 [Escherichia coli HS] gi|161506007|ref|YP_001573120.1| 50S ribosomal protein L4 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168260851|ref|ZP_02682824.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468002|ref|ZP_02701839.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168752800|ref|ZP_02777822.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113] gi|168753086|ref|ZP_02778093.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401] gi|168769184|ref|ZP_02794191.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486] gi|168778201|ref|ZP_02803208.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196] gi|168784352|ref|ZP_02809359.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076] gi|168785137|ref|ZP_02810144.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869] gi|170018445|ref|YP_001723399.1| 50S ribosomal protein L4 [Escherichia coli ATCC 8739] gi|170082838|ref|YP_001732158.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. DH10B] gi|170679638|ref|YP_001745581.1| 50S ribosomal protein L4 [Escherichia coli SMS-3-5] gi|170769547|ref|ZP_02904000.1| ribosomal protein L4 [Escherichia albertii TW07627] gi|187732957|ref|YP_001882003.1| 50S ribosomal protein L4 [Shigella boydii CDC 3083-94] gi|188493095|ref|ZP_03000365.1| ribosomal protein L4 [Escherichia coli 53638] gi|194435462|ref|ZP_03067627.1| ribosomal protein L4 [Shigella dysenteriae 1012] gi|194445826|ref|YP_002042689.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447625|ref|YP_002047462.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472387|ref|ZP_03078371.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736512|ref|YP_002116381.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195939868|ref|ZP_03085250.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. EC4024] gi|197248901|ref|YP_002148358.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262161|ref|ZP_03162235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364288|ref|YP_002143925.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243728|ref|YP_002217401.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386551|ref|ZP_03213163.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354933|ref|YP_002228734.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858681|ref|YP_002245332.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208805624|ref|ZP_03247961.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206] gi|208813906|ref|ZP_03255235.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045] gi|208819842|ref|ZP_03260162.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042] gi|209398551|ref|YP_002272775.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115] gi|209920785|ref|YP_002294869.1| 50S ribosomal protein L4 [Escherichia coli SE11] gi|213021588|ref|ZP_03336035.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052954|ref|ZP_03345832.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423717|ref|ZP_03356697.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425751|ref|ZP_03358501.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213865565|ref|ZP_03387684.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488619|ref|YP_002331050.1| 50S ribosomal protein L4 [Escherichia coli O127:H6 str. E2348/69] gi|217326437|ref|ZP_03442521.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588] gi|218550594|ref|YP_002384385.1| 50S ribosomal protein L4 [Escherichia fergusonii ATCC 35469] gi|218555876|ref|YP_002388789.1| 50S ribosomal protein L4 [Escherichia coli IAI1] gi|218560380|ref|YP_002393293.1| 50S ribosomal protein L4 [Escherichia coli S88] gi|218691605|ref|YP_002399817.1| 50S ribosomal protein L4 [Escherichia coli ED1a] gi|218697011|ref|YP_002404678.1| 50S ribosomal protein L4 [Escherichia coli 55989] gi|218702081|ref|YP_002409710.1| 50S ribosomal protein L4 [Escherichia coli IAI39] gi|218706926|ref|YP_002414445.1| 50S ribosomal protein L4 [Escherichia coli UMN026] gi|224585234|ref|YP_002639033.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883450|ref|ZP_04001255.1| 50S ribosomal protein L4 [Escherichia coli 83972] gi|237703049|ref|ZP_04533530.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA] gi|238902410|ref|YP_002928206.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952] gi|253771857|ref|YP_003034688.1| 50S ribosomal protein L4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163247|ref|YP_003046355.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606] gi|254795256|ref|YP_003080093.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. TW14359] gi|256020678|ref|ZP_05434543.1| 50S ribosomal protein L4 [Shigella sp. D9] gi|256025953|ref|ZP_05439818.1| 50S ribosomal protein L4 [Escherichia sp. 4_1_40B] gi|260599638|ref|YP_003212209.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032] gi|260846117|ref|YP_003223895.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str. 12009] gi|260857440|ref|YP_003231331.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str. 11368] gi|260870062|ref|YP_003236464.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str. 11128] gi|261224624|ref|ZP_05938905.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. FRIK2000] gi|261254482|ref|ZP_05947015.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. FRIK966] gi|283788045|ref|YP_003367910.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168] gi|283835736|ref|ZP_06355477.1| hypothetical protein CIT292_10128 [Citrobacter youngae ATCC 29220] gi|289824751|ref|ZP_06544216.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291284677|ref|YP_003501495.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615] gi|293406916|ref|ZP_06650840.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412] gi|293412738|ref|ZP_06655406.1| 50S ribosomal protein L4/L1 [Escherichia coli B354] gi|293416736|ref|ZP_06659373.1| 50S ribosomal protein L4/L1 [Escherichia coli B185] gi|293453637|ref|ZP_06664056.1| 50S ribosomal protein L4/L1 [Escherichia coli B088] gi|297516597|ref|ZP_06934983.1| 50S ribosomal protein L4 [Escherichia coli OP50] gi|298382656|ref|ZP_06992251.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302] gi|300815471|ref|ZP_07095696.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1] gi|300822878|ref|ZP_07103014.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7] gi|300896667|ref|ZP_07115183.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1] gi|300903567|ref|ZP_07121489.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1] gi|300918292|ref|ZP_07134896.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1] gi|300921872|ref|ZP_07138028.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1] gi|300932212|ref|ZP_07147491.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1] gi|300935317|ref|ZP_07150327.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1] gi|300946541|ref|ZP_07160806.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1] gi|300954806|ref|ZP_07167233.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1] gi|300973998|ref|ZP_07172405.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1] gi|300979890|ref|ZP_07174766.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1] gi|301018817|ref|ZP_07183061.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1] gi|301021131|ref|ZP_07185171.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1] gi|301046090|ref|ZP_07193268.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1] gi|301305528|ref|ZP_07211620.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1] gi|301325114|ref|ZP_07218648.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1] gi|301643861|ref|ZP_07243892.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1] gi|306816338|ref|ZP_07450476.1| 50S ribosomal protein L4 [Escherichia coli NC101] gi|307140002|ref|ZP_07499358.1| 50S ribosomal protein L4 [Escherichia coli H736] gi|307315102|ref|ZP_07594685.1| ribosomal protein L4/L1e [Escherichia coli W] gi|309785641|ref|ZP_07680272.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617] gi|309794594|ref|ZP_07689016.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7] gi|311277726|ref|YP_003939957.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1] gi|312968356|ref|ZP_07782566.1| 50S ribosomal protein L4 [Escherichia coli 2362-75] gi|312972420|ref|ZP_07786594.1| 50S ribosomal protein L4 [Escherichia coli 1827-70] gi|331644015|ref|ZP_08345144.1| ribosomal protein L4/L1 family protein [Escherichia coli H736] gi|331649116|ref|ZP_08350202.1| ribosomal protein L4/L1 family protein [Escherichia coli M605] gi|331654912|ref|ZP_08355911.1| ribosomal protein L4/L1 family protein [Escherichia coli M718] gi|331659609|ref|ZP_08360547.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206] gi|331664932|ref|ZP_08365833.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143] gi|331670148|ref|ZP_08370987.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271] gi|331674821|ref|ZP_08375578.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280] gi|331679388|ref|ZP_08380058.1| ribosomal protein L4/L1 family protein [Escherichia coli H591] gi|331684961|ref|ZP_08385547.1| ribosomal protein L4/L1 family protein [Escherichia coli H299] gi|46397662|sp|P60723|RL4_ECOLI RecName: Full=50S ribosomal protein L4 gi|46397663|sp|P60724|RL4_ECOL6 RecName: Full=50S ribosomal protein L4 gi|46397664|sp|P60725|RL4_ECO57 RecName: Full=50S ribosomal protein L4 gi|46397665|sp|P60726|RL4_SALTY RecName: Full=50S ribosomal protein L4 gi|46397666|sp|P60727|RL4_SALTI RecName: Full=50S ribosomal protein L4 gi|75480349|sp|Q57J33|RL4_SALCH RecName: Full=50S ribosomal protein L4 gi|81599606|sp|Q5PIV3|RL4_SALPA RecName: Full=50S ribosomal protein L4 gi|109893636|sp|Q31VV7|RL4_SHIBS RecName: Full=50S ribosomal protein L4 gi|109893637|sp|Q32B32|RL4_SHIDS RecName: Full=50S ribosomal protein L4 gi|109893638|sp|Q3YWU0|RL4_SHISS RecName: Full=50S ribosomal protein L4 gi|122422184|sp|Q1R604|RL4_ECOUT RecName: Full=50S ribosomal protein L4 gi|122957940|sp|Q0TCE2|RL4_ECOL5 RecName: Full=50S ribosomal protein L4 gi|166234654|sp|A8AQL8|RL4_CITK8 RecName: Full=50S ribosomal protein L4 gi|166234664|sp|A1AGK6|RL4_ECOK1 RecName: Full=50S ribosomal protein L4 gi|166234665|sp|A7MPH8|RL4_ENTS8 RecName: Full=50S ribosomal protein L4 gi|166990947|sp|A7ZSK8|RL4_ECO24 RecName: Full=50S ribosomal protein L4 gi|166990948|sp|A8A5C4|RL4_ECOHS RecName: Full=50S ribosomal protein L4 gi|189029502|sp|B1IPY0|RL4_ECOLC RecName: Full=50S ribosomal protein L4 gi|189042882|sp|A9MN48|RL4_SALAR RecName: Full=50S ribosomal protein L4 gi|226730655|sp|B7MCT4|RL4_ECO45 RecName: Full=50S ribosomal protein L4 gi|226730656|sp|B5YTP0|RL4_ECO5E RecName: Full=50S ribosomal protein L4 gi|226730657|sp|B7NLN8|RL4_ECO7I RecName: Full=50S ribosomal protein L4 gi|226730658|sp|B7M1N3|RL4_ECO8A RecName: Full=50S ribosomal protein L4 gi|226730659|sp|B1X6H0|RL4_ECODH RecName: Full=50S ribosomal protein L4 gi|226730660|sp|B7NDU0|RL4_ECOLU RecName: Full=50S ribosomal protein L4 gi|226730661|sp|B6I233|RL4_ECOSE RecName: Full=50S ribosomal protein L4 gi|226730662|sp|B1LHD3|RL4_ECOSM RecName: Full=50S ribosomal protein L4 gi|226730664|sp|B7LRT5|RL4_ESCF3 RecName: Full=50S ribosomal protein L4 gi|226730716|sp|B5F8F1|RL4_SALA4 RecName: Full=50S ribosomal protein L4 gi|226730717|sp|B5FJL3|RL4_SALDC RecName: Full=50S ribosomal protein L4 gi|226730718|sp|B5R290|RL4_SALEP RecName: Full=50S ribosomal protein L4 gi|226730719|sp|B5RH16|RL4_SALG2 RecName: Full=50S ribosomal protein L4 gi|226730720|sp|B4TKL4|RL4_SALHS RecName: Full=50S ribosomal protein L4 gi|226730721|sp|B4SUT9|RL4_SALNS RecName: Full=50S ribosomal protein L4 gi|226730722|sp|B5BGY5|RL4_SALPK RecName: Full=50S ribosomal protein L4 gi|226730723|sp|B4TXE1|RL4_SALSV RecName: Full=50S ribosomal protein L4 gi|226730726|sp|B2U2T7|RL4_SHIB3 RecName: Full=50S ribosomal protein L4 gi|254803733|sp|B7UK43|RL4_ECO27 RecName: Full=50S ribosomal protein L4 gi|254803734|sp|B7L4K8|RL4_ECO55 RecName: Full=50S ribosomal protein L4 gi|254803735|sp|B7N1A3|RL4_ECO81 RecName: Full=50S ribosomal protein L4 gi|254803751|sp|C0Q0B5|RL4_SALPC RecName: Full=50S ribosomal protein L4 gi|259491555|sp|C4ZUH4|RL4_ECOBW RecName: Full=50S ribosomal protein L4 gi|25294998|pir||AB1006 50S ribosomal chain protein L4 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|33357904|pdb|1P85|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome gi|33357932|pdb|1P86|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome gi|83754066|pdb|2AW4|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|83754122|pdb|2AWB|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666575|pdb|1VS6|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666627|pdb|1VS8|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138095|pdb|2I2T|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138149|pdb|2I2V|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|119390349|pdb|2J28|E Chain E, Model Of E. Coli Srp Bound To 70s Rncs gi|157836052|pdb|2QOV|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836104|pdb|2QOX|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836156|pdb|2QOZ|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836208|pdb|2QP1|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|158429727|pdb|2QAM|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429779|pdb|2QAO|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429837|pdb|2QBA|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429889|pdb|2QBC|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429941|pdb|2QBE|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429994|pdb|2QBG|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430047|pdb|2QBI|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430100|pdb|2QBK|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431400|pdb|2Z4L|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431453|pdb|2Z4N|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|168988735|pdb|2VHM|E Chain E, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) gi|168988766|pdb|2VHN|E Chain E, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) gi|169404607|pdb|2RDO|E Chain E, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound gi|197107305|pdb|3DF2|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|197107357|pdb|3DF4|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|209870358|pdb|3BBX|E Chain E, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex gi|224510763|pdb|3FIK|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. gi|256032399|pdb|3E1B|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre- Accommodation State gi|256032456|pdb|3E1D|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Post- Accommodation State gi|257097346|pdb|3I1N|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097398|pdb|3I1P|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097452|pdb|3I1R|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097506|pdb|3I1T|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097561|pdb|3I20|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097616|pdb|3I22|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|290560336|pdb|3KCR|E Chain E, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4 gi|294662254|pdb|2WWQ|E Chain E, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2). gi|308198359|pdb|1VT2|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|308198733|pdb|3ORB|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101. gi|308388011|pdb|3OFQ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|308388042|pdb|3OFR|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. gi|309320069|pdb|3OFC|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound. gi|309320100|pdb|3OFD|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|309320173|pdb|3OFZ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin. gi|309320204|pdb|3OG0|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|315113658|pdb|3OAS|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|315113689|pdb|3OAT|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound. gi|326634214|pdb|3IZT|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. gi|326634247|pdb|3IZU|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon gi|329666020|pdb|3J01|E Chain E, Structure Of The Ribosome-Secye Complex In The Membrane Environment gi|12517951|gb|AAG58440.1|AE005557_9 50S ribosomal subunit protein L4, regulates expression of S10 operon [Escherichia coli O157:H7 str. EDL933] gi|26110341|gb|AAN82527.1|AE016767_287 50S ribosomal protein L4 [Escherichia coli CFT073] gi|42828|emb|CAA26461.1| unnamed protein product [Escherichia coli] gi|606253|gb|AAA58116.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|1789715|gb|AAC76344.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. MG1655] gi|13363657|dbj|BAB37607.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Escherichia coli O157:H7 str. Sakai] gi|16421996|gb|AAL22302.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505150|emb|CAD08174.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhi] gi|29139969|gb|AAO71533.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129615|gb|AAV79121.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129576|gb|AAX67279.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73857315|gb|AAZ90022.1| 50S ribosomal subunit protein L4 [Shigella sonnei Ss046] gi|81242763|gb|ABB63473.1| 50S ribosomal subunit protein L4 [Shigella dysenteriae Sd197] gi|81247093|gb|ABB67801.1| 50S ribosomal subunit protein L4 [Shigella boydii Sb227] gi|85676722|dbj|BAE77972.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K12 substr. W3110] gi|91074329|gb|ABE09210.1| 50S ribosomal subunit protein L4 [Escherichia coli UTI89] gi|110345150|gb|ABG71387.1| 50S ribosomal protein L4 [Escherichia coli 536] gi|115514721|gb|ABJ02796.1| 50S ribosomal protein L4 [Escherichia coli APEC O1] gi|156530487|gb|ABU75313.1| hypothetical protein ESA_00004 [Cronobacter sakazakii ATCC BAA-894] gi|157068473|gb|ABV07728.1| ribosomal protein L4 [Escherichia coli HS] gi|157078119|gb|ABV17827.1| ribosomal protein L4 [Escherichia coli E24377A] gi|157086104|gb|ABV15782.1| hypothetical protein CKO_04737 [Citrobacter koseri ATCC BAA-895] gi|160867354|gb|ABX23977.1| hypothetical protein SARI_04188 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|169753373|gb|ACA76072.1| ribosomal protein L4/L1e [Escherichia coli ATCC 8739] gi|169890673|gb|ACB04380.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12 substr. DH10B] gi|170121604|gb|EDS90535.1| ribosomal protein L4 [Escherichia albertii TW07627] gi|170517356|gb|ACB15534.1| ribosomal protein L4 [Escherichia coli SMS-3-5] gi|187429949|gb|ACD09223.1| ribosomal protein L4 [Shigella boydii CDC 3083-94] gi|187766785|gb|EDU30629.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196] gi|188013517|gb|EDU51639.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113] gi|188488294|gb|EDU63397.1| ribosomal protein L4 [Escherichia coli 53638] gi|188998466|gb|EDU67464.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076] gi|189359198|gb|EDU77617.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401] gi|189361739|gb|EDU80158.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486] gi|189374367|gb|EDU92783.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869] gi|194404489|gb|ACF64711.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405929|gb|ACF66148.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194416295|gb|EDX32499.1| ribosomal protein L4 [Shigella dysenteriae 1012] gi|194458751|gb|EDX47590.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712014|gb|ACF91235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628920|gb|EDX48330.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095765|emb|CAR61335.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212604|gb|ACH50001.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240416|gb|EDY23036.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938244|gb|ACH75577.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603649|gb|EDZ02194.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274714|emb|CAR39770.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205350182|gb|EDZ36813.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710484|emb|CAR34842.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208725425|gb|EDZ75026.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206] gi|208735183|gb|EDZ83870.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045] gi|208739965|gb|EDZ87647.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042] gi|209159951|gb|ACI37384.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115] gi|209757048|gb|ACI76836.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757050|gb|ACI76837.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757052|gb|ACI76838.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757054|gb|ACI76839.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209757056|gb|ACI76840.1| 50S ribosomal subunit protein L4 [Escherichia coli] gi|209914044|dbj|BAG79118.1| 50S ribosomal protein L4 [Escherichia coli SE11] gi|215266691|emb|CAS11130.1| 50S ribosomal subunit protein L4 [Escherichia coli O127:H6 str. E2348/69] gi|217322658|gb|EEC31082.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588] gi|218353743|emb|CAV00036.1| 50S ribosomal subunit protein L4 [Escherichia coli 55989] gi|218358135|emb|CAQ90782.1| 50S ribosomal subunit protein L4 [Escherichia fergusonii ATCC 35469] gi|218362644|emb|CAR00270.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI1] gi|218367149|emb|CAR04923.1| 50S ribosomal subunit protein L4 [Escherichia coli S88] gi|218372067|emb|CAR19927.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI39] gi|218429169|emb|CAR10121.2| 50S ribosomal subunit protein L4 [Escherichia coli ED1a] gi|218434023|emb|CAR14940.1| 50S ribosomal subunit protein L4 [Escherichia coli UMN026] gi|222035028|emb|CAP77771.1| 50S ribosomal protein L4 [Escherichia coli LF82] gi|224469762|gb|ACN47592.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226902313|gb|EEH88572.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA] gi|227839594|gb|EEJ50060.1| 50S ribosomal protein L4 [Escherichia coli 83972] gi|238859876|gb|ACR61874.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952] gi|242378846|emb|CAQ33638.1| 50S ribosomal subunit protein L4, subunit of 50S ribosomal subunit and ribosome [Escherichia coli BL21(DE3)] gi|253322901|gb|ACT27503.1| ribosomal protein L4/L1e [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975148|gb|ACT40819.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606] gi|253979304|gb|ACT44974.1| 50S ribosomal protein L4 [Escherichia coli BL21(DE3)] gi|254594656|gb|ACT74017.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str. TW14359] gi|257756089|dbj|BAI27591.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str. 11368] gi|257761264|dbj|BAI32761.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str. 12009] gi|257766418|dbj|BAI37913.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str. 11128] gi|260218815|emb|CBA34170.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032] gi|260447662|gb|ACX38084.1| ribosomal protein L4/L1e [Escherichia coli DH1] gi|261248595|emb|CBG26433.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995648|gb|ACY90533.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180354|dbj|BAI56684.1| 50S ribosomal protein L4 [Escherichia coli SE15] gi|282951499|emb|CBG91198.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168] gi|284923325|emb|CBG36419.1| 50S ribosomal subunit protein L4 [Escherichia coli 042] gi|290764550|gb|ADD58511.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615] gi|291068415|gb|EFE06524.1| ribosomal protein L4/L1 family protein [Citrobacter youngae ATCC 29220] gi|291321763|gb|EFE61194.1| 50S ribosomal protein L4/L1 [Escherichia coli B088] gi|291425727|gb|EFE98761.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412] gi|291431312|gb|EFF04297.1| 50S ribosomal protein L4/L1 [Escherichia coli B185] gi|291468385|gb|EFF10878.1| 50S ribosomal protein L4/L1 [Escherichia coli B354] gi|294490448|gb|ADE89204.1| ribosomal protein L4 [Escherichia coli IHE3034] gi|295096960|emb|CBK86050.1| LSU ribosomal protein L4P [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298276492|gb|EFI18010.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302] gi|299881661|gb|EFI89872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1] gi|300301916|gb|EFJ58301.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1] gi|300309008|gb|EFJ63528.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1] gi|300318235|gb|EFJ68019.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1] gi|300359498|gb|EFJ75368.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1] gi|300399527|gb|EFJ83065.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1] gi|300404440|gb|EFJ87978.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1] gi|300409401|gb|EFJ92939.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1] gi|300414553|gb|EFJ97863.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1] gi|300421720|gb|EFK05031.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1] gi|300453787|gb|EFK17407.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1] gi|300459473|gb|EFK22966.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1] gi|300460036|gb|EFK23529.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1] gi|300524644|gb|EFK45713.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7] gi|300532363|gb|EFK53425.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1] gi|300839223|gb|EFK66983.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1] gi|300847993|gb|EFK75753.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1] gi|301077764|gb|EFK92570.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1] gi|301159982|emb|CBW19501.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305850734|gb|EFM51191.1| 50S ribosomal protein L4 [Escherichia coli NC101] gi|306905451|gb|EFN35986.1| ribosomal protein L4/L1e [Escherichia coli W] gi|307555406|gb|ADN48181.1| 50S ribosomal subunit protein L4 [Escherichia coli ABU 83972] gi|307628354|gb|ADN72658.1| 50S ribosomal protein L4 [Escherichia coli UM146] gi|308121644|gb|EFO58906.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7] gi|308746921|gb|ADO46673.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1] gi|308926761|gb|EFP72237.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617] gi|309703731|emb|CBJ03072.1| 50S ribosomal subunit protein L4 [Escherichia coli ETEC H10407] gi|310334797|gb|EFQ01002.1| 50S ribosomal protein L4 [Escherichia coli 1827-70] gi|312287181|gb|EFR15091.1| 50S ribosomal protein L4 [Escherichia coli 2362-75] gi|312914462|dbj|BAJ38436.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312947870|gb|ADR28697.1| 50S ribosomal protein L4 [Escherichia coli O83:H1 str. NRG 857C] gi|315062611|gb|ADT76938.1| 50S ribosomal subunit protein L4 [Escherichia coli W] gi|315137894|dbj|BAJ45053.1| 50S ribosomal protein L4 [Escherichia coli DH1] gi|315255902|gb|EFU35870.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 85-1] gi|315284606|gb|EFU44051.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 110-3] gi|315292364|gb|EFU51716.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 153-1] gi|315298617|gb|EFU57872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 16-3] gi|315616996|gb|EFU97608.1| 50S ribosomal protein L4 [Escherichia coli 3431] gi|320087884|emb|CBY97647.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320173960|gb|EFW49136.1| LSU ribosomal protein L4p (L1e) [Shigella dysenteriae CDC 74-1112] gi|320180153|gb|EFW55092.1| LSU ribosomal protein L4p (L1e) [Shigella boydii ATCC 9905] gi|320187037|gb|EFW61749.1| LSU ribosomal protein L4p (L1e) [Shigella flexneri CDC 796-83] gi|320191650|gb|EFW66300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str. EC1212] gi|320199503|gb|EFW74093.1| LSU ribosomal protein L4p (L1e) [Escherichia coli EC4100B] gi|320639624|gb|EFX09218.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. G5101] gi|320645122|gb|EFX14138.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. 493-89] gi|320650433|gb|EFX18899.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. H 2687] gi|320655958|gb|EFX23878.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661410|gb|EFX28825.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. USDA 5905] gi|320666432|gb|EFX33415.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. LSU-61] gi|321226486|gb|EFX51536.1| LSU ribosomal protein L4p (L1e) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615020|gb|EFY11944.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617307|gb|EFY14208.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625529|gb|EFY22354.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626371|gb|EFY23180.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632117|gb|EFY28870.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635004|gb|EFY31727.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643295|gb|EFY39862.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646621|gb|EFY43128.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649967|gb|EFY46386.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652684|gb|EFY49024.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659559|gb|EFY55803.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665499|gb|EFY61686.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670393|gb|EFY66532.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670466|gb|EFY66600.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675042|gb|EFY71125.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681579|gb|EFY77608.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685923|gb|EFY81912.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716430|gb|EFZ08001.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131797|gb|ADX19227.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323154157|gb|EFZ40360.1| 50S ribosomal protein L4 [Escherichia coli EPECa14] gi|323162998|gb|EFZ48833.1| 50S ribosomal protein L4 [Escherichia coli E128010] gi|323173955|gb|EFZ59583.1| 50S ribosomal protein L4 [Escherichia coli LT-68] gi|323179145|gb|EFZ64719.1| 50S ribosomal protein L4 [Escherichia coli 1180] gi|323182797|gb|EFZ68198.1| 50S ribosomal protein L4 [Escherichia coli 1357] gi|323194031|gb|EFZ79231.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196451|gb|EFZ81602.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202310|gb|EFZ87355.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207341|gb|EFZ92291.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211223|gb|EFZ96068.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216068|gb|EGA00799.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223441|gb|EGA07769.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226829|gb|EGA11019.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231809|gb|EGA15919.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233238|gb|EGA17333.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237305|gb|EGA21370.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245540|gb|EGA29539.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249046|gb|EGA32968.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250669|gb|EGA34550.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256898|gb|EGA40612.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263047|gb|EGA46594.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266047|gb|EGA49542.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272804|gb|EGA56207.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376802|gb|ADX49070.1| ribosomal protein L4/L1e [Escherichia coli KO11] gi|323934483|gb|EGB30891.1| ribosomal protein L4/L1 family protein [Escherichia coli E1520] gi|323939259|gb|EGB35471.1| ribosomal protein L4/L1 family protein [Escherichia coli E482] gi|323944260|gb|EGB40336.1| ribosomal protein L4/L1 family protein [Escherichia coli H120] gi|323950233|gb|EGB46115.1| ribosomal protein L4/L1 family protein [Escherichia coli H252] gi|323954558|gb|EGB50341.1| ribosomal protein L4/L1 family protein [Escherichia coli H263] gi|323959530|gb|EGB55183.1| ribosomal protein L4/L1 family protein [Escherichia coli H489] gi|323966281|gb|EGB61716.1| ribosomal protein L4/L1 family protein [Escherichia coli M863] gi|323970123|gb|EGB65397.1| ribosomal protein L4/L1 family protein [Escherichia coli TA007] gi|323974728|gb|EGB69841.1| ribosomal protein L4/L1 family protein [Escherichia coli TW10509] gi|324009010|gb|EGB78229.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 57-2] gi|324014935|gb|EGB84154.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 60-1] gi|324017863|gb|EGB87082.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 117-3] gi|324111998|gb|EGC05977.1| ribosomal protein L4/L1 family protein [Escherichia fergusonii B253] gi|324116291|gb|EGC10211.1| ribosomal protein L4/L1 family protein [Escherichia coli E1167] gi|325498884|gb|EGC96743.1| 50S ribosomal protein L4 [Escherichia fergusonii ECD227] gi|326344551|gb|EGD68300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str. 1125] gi|326625182|gb|EGE31527.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630082|gb|EGE36425.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327250967|gb|EGE62660.1| 50S ribosomal protein L4 [Escherichia coli STEC_7v] gi|330909361|gb|EGH37875.1| LSU ribosomal protein L4p (L1e) [Escherichia coli AA86] gi|331036309|gb|EGI08535.1| ribosomal protein L4/L1 family protein [Escherichia coli H736] gi|331041614|gb|EGI13758.1| ribosomal protein L4/L1 family protein [Escherichia coli M605] gi|331046927|gb|EGI19005.1| ribosomal protein L4/L1 family protein [Escherichia coli M718] gi|331052824|gb|EGI24857.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206] gi|331057442|gb|EGI29428.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143] gi|331062210|gb|EGI34130.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271] gi|331067730|gb|EGI39128.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280] gi|331072560|gb|EGI43885.1| ribosomal protein L4/L1 family protein [Escherichia coli H591] gi|331077332|gb|EGI48544.1| ribosomal protein L4/L1 family protein [Escherichia coli H299] gi|332085470|gb|EGI90636.1| 50S ribosomal protein L4 [Shigella boydii 5216-82] gi|332085827|gb|EGI90991.1| 50S ribosomal protein L4 [Shigella dysenteriae 155-74] gi|332090535|gb|EGI95633.1| 50S ribosomal protein L4 [Shigella boydii 3594-74] gi|332104226|gb|EGJ07572.1| 50S ribosomal subunit protein L4 [Shigella sp. D9] gi|223250|prf||0701225A ribosomal protein L4 Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|296168558|ref|ZP_06850362.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896621|gb|EFG76260.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 217 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 2/203 (0%) Query: 1 MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++ V+ DG+ +G I + ++F ++ +V+ Q R G +K R EV+ Sbjct: 1 MALKIDVKTPDGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGEVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ Sbjct: 61 GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYAQRTPKKMIAAALRGALSDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I + +V+ + TK L ++I + D + RN+P +++L Sbjct: 121 NGRIHAVTEIVAGQTPSTKNARAFLGTLTDRKKVLIVIGRSDEAGAKSVRNLPGVHILTP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V S A+ A Sbjct: 181 DQLNTYDVLLSDDVVFSVEALNA 203 >gi|152972226|ref|YP_001337372.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578232|ref|YP_002236282.1| ribosomal protein L4 [Klebsiella pneumoniae 342] gi|238896815|ref|YP_002921560.1| 50S ribosomal protein L4 [Klebsiella pneumoniae NTUH-K2044] gi|288933267|ref|YP_003437326.1| ribosomal protein L4/L1e [Klebsiella variicola At-22] gi|290512070|ref|ZP_06551438.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55] gi|330002293|ref|ZP_08304287.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3] gi|166234677|sp|A6TEX1|RL4_KLEP7 RecName: Full=50S ribosomal protein L4 gi|226730676|sp|B5XN95|RL4_KLEP3 RecName: Full=50S ribosomal protein L4 gi|150957075|gb|ABR79105.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567290|gb|ACI09066.1| ribosomal protein L4 [Klebsiella pneumoniae 342] gi|238549142|dbj|BAH65493.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288887996|gb|ADC56314.1| ribosomal protein L4/L1e [Klebsiella variicola At-22] gi|289775860|gb|EFD83860.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55] gi|328537366|gb|EGF63616.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+E+ +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|91205876|ref|YP_538231.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C] gi|157826765|ref|YP_001495829.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389] gi|109893633|sp|Q1RHM2|RL4_RICBR RecName: Full=50S ribosomal protein L4 gi|166199856|sp|A8GVB5|RL4_RICB8 RecName: Full=50S ribosomal protein L4 gi|91069420|gb|ABE05142.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C] gi|157802069|gb|ABV78792.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389] Length = 207 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + NL E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG GPV LPKKVR L L HALS+KF Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLETPKTSNLVNILNKFQGKSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R K Sbjct: 181 ANVYDIIRHEYVLLSQEAVNVLEERLK 207 >gi|114327219|ref|YP_744376.1| 50S ribosomal protein L4 [Granulibacter bethesdensis CGDNIH1] gi|122327801|sp|Q0BUP9|RL4_GRABC RecName: Full=50S ribosomal protein L4 gi|114315393|gb|ABI61453.1| LSU ribosomal protein L1E (= L4P) [Granulibacter bethesdensis CGDNIH1] Length = 215 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 84/205 (40%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ ++ LD G + ++IFA P+ I+ARV+ WQ +R G K KG EV+ T Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID E KT+ L + RAL +ALI+DG +D F A+R++ +++LP G Sbjct: 121 KLVVIDTAAGME-KTRDLAAKLRALGWRSALIVDGASVDEGFARASRSLLAVDVLPTIGA 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++ + +EAL+ R Sbjct: 180 NVYDILNHDVLAITVAGVEALKARL 204 >gi|85713374|ref|ZP_01044383.1| 50S ribosomal protein L4 [Idiomarina baltica OS145] gi|85692802|gb|EAQ30791.1| 50S ribosomal protein L4 [Idiomarina baltica OS145] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ G + VSE F + + ++ +V+ + R G K RSEVA G Sbjct: 1 MELTLKDAKGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQNHEQKVNKKMYRGAVKSILSELIRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++N + KTK LV + + L+L++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLQVVENFELEAPKTKQLVAKLKELNLNDVLIVT-KEVDENLFLASRNLHKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++ A++ LE+ Sbjct: 176 DPVSLIAFENVLMTADAVKQLEEVL 200 >gi|262045176|ref|ZP_06018203.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037496|gb|EEW38740.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+E+ +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTTDAVKQVEEML 200 >gi|37528542|ref|NP_931887.1| 50S ribosomal protein L4 [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577173|sp|Q7MYF2|RL4_PHOLL RecName: Full=50S ribosomal protein L4 gi|36787980|emb|CAE17097.1| 50S ribosomal protein L [Photorhabdus luminescens subsp. laumondii TTO1] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMALEDVLIIT-NEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|304570676|ref|YP_001805429.2| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142] Length = 210 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + +K R+EV Sbjct: 1 MVDCNVKNWQGEEVGQTTLELKVAKDETASHLLHRAVVRHLANARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+ + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAIGSRV-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + KTK L + + + + + D N L+ARN+ ++ +L Sbjct: 119 EDMIVVENFAEQLPQPKTKELASALTRWGVEPTQKVALVLVETDANIYLSARNLCHVKIL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ AI +++ + Sbjct: 179 RADSLNVYDLLDADKIVITSEAISKIQEVY 208 >gi|242237860|ref|YP_002986041.1| 50S ribosomal protein L4 [Dickeya dadantii Ech703] gi|251787972|ref|YP_003002693.1| 50S ribosomal protein L4 [Dickeya zeae Ech1591] gi|271502245|ref|YP_003335271.1| 50S ribosomal protein L4/L1e [Dickeya dadantii Ech586] gi|242129917|gb|ACS84219.1| ribosomal protein L4/L1e [Dickeya dadantii Ech703] gi|247536593|gb|ACT05214.1| ribosomal protein L4/L1e [Dickeya zeae Ech1591] gi|270345800|gb|ACZ78565.1| ribosomal protein L4/L1e [Dickeya dadantii Ech586] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + L L + LII G +LD N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|239943578|ref|ZP_04695515.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] gi|239990031|ref|ZP_04710695.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 11379] gi|291447045|ref|ZP_06586435.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] gi|291349992|gb|EFE76896.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 101/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKSLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|258591317|emb|CBE67616.1| 50S ribosomal subunit protein L4 [NC10 bacterium 'Dutch sediment'] Length = 211 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 2/203 (0%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 + +G +++ E +F ++ V+R Q +R G + ++ RSEV G K + Sbjct: 8 LDTNGVKTTDVTLDEMVFGAVGPSHLMHDVVRMQLANRRQGTASTRRRSEVRGGGKKPWK 67 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR ++ +RGGG FGP P + +P++VR+ ALR ALS+K + +V+ Sbjct: 68 QKGTGRARSGTRRSPLWRGGGTVFGPQPRSYAYEIPRQVRASALRTALSEKVRAGQFVVV 127 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPVQGINVY 184 D L E TK L + + Q+ D ++ RN+P++ L+P G+NVY Sbjct: 128 DGLSLAEPSTKAFKALLTRLGVQGRALFVTDQVHQDDAVSMSCRNLPDVTLVPTAGLNVY 187 Query: 185 DILRCSKLVLSKSAIEALEDRFK 207 DILR L+++K A+ A+E+ +K Sbjct: 188 DILRHDTLIMTKGAVSAVEEAWK 210 >gi|294814468|ref|ZP_06773111.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|326442857|ref|ZP_08217591.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|294327067|gb|EFG08710.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] Length = 216 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 121 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V +++A E Sbjct: 181 LNTYDVIRSEDVVFTQAAFETF 202 >gi|238754176|ref|ZP_04615534.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473] gi|238763729|ref|ZP_04624688.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638] gi|238698031|gb|EEP90789.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638] gi|238707672|gb|EEQ00032.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473] Length = 201 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LII G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|149279663|ref|ZP_01885792.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39] gi|149229699|gb|EDM35089.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39] Length = 209 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKVLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V+++ KTK V AL+L ++ + N L++RNI ++ Sbjct: 121 NNVVVLEDFSFDSIKTKNYVNLVSALNLAGEKTLLVLPSQNNNIYLSSRNIQKAKVITAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L C KL+L+ +++ LE+ F Sbjct: 181 QLNTYDVLNCGKLLLTADSLKTLEEAF 207 >gi|188996238|ref|YP_001930489.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1] gi|188931305|gb|ACD65935.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1] Length = 208 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N E G I++ EDIF + QG + V++W KR G + +K R+EVA + Sbjct: 1 MEFNVVNNKNEVIGKINLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRARH + F GGG A GP P ALPKKVR L+ L+ K +N Sbjct: 61 RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D+ + KTK + ++ L N +++ + N + RNIP + +L +G Sbjct: 121 ELIVVDDFNFEAPKTKNAIEVLKSFGLENSKVLLVLPEKLENVIKSFRNIPKVKILLAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L K+++ KSA+E +++R Sbjct: 181 INSYDVLNNDKVIIFKSALEKIQERL 206 >gi|322796484|gb|EFZ18991.1| hypothetical protein SINV_11616 [Solenopsis invicta] Length = 287 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ ++ + G++++ I+A P+ I+ + +RWQ + + + +K R+EV G K Sbjct: 62 NLNTIEEKKLGLVTLHPHIYATAPRIDIVHQNVRWQKMYRWVSYAHTKTRAEVRGGGRKP 121 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S ++GGG A GP P + LP R L LS K +D+ Sbjct: 122 WPQKGTGRARHGSIRSPLWKGGGIAHGPRSPTPHFYMLPFYTRVAGLTSMLSIKLAQDDL 181 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLLPVQGI 181 +ID L + Y+ + + L +D + N LA I ++NL+PV G+ Sbjct: 182 HIIDELEIPTSEPSYVEQLVEERNWGPSVLFVDSYDIMPPNITLATDKIKHVNLMPVYGL 241 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY +L+ + LVL++ A +E++ Sbjct: 242 NVYSMLKHNTLVLTEKAARLIEEKL 266 >gi|89076769|ref|ZP_01163042.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34] gi|89047582|gb|EAR53196.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34] Length = 200 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ G +LD N LAARN+ +++ I Sbjct: 116 RLIVVDNFTLEAPKTKALVAKLKELELTDALIVTG-ELDENLFLAARNLYKVDVRDAAAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ +A++A+E+ Sbjct: 175 DPVSLIAFDKIVMTAAAVKAVEEML 199 >gi|88704377|ref|ZP_01102091.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71] gi|88701428|gb|EAQ98533.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71] Length = 205 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ E G +SVS+ FA + + ++ +V+ R G K RS+V+ G Sbjct: 1 MELSILKPGNESAGTLSVSDANFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ AL+ +S+ + Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIMSELTRQD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK LV + +++AL+I Q++ N LA+RN+ +++ VQ I Sbjct: 121 RLVVVETLDLDAPKTKLLVNQLDGYGVNSALLI-ADQVNENLYLASRNLQKVDVRDVQAI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + +L K++++ AI+ +E+ Sbjct: 180 DPVSLLAHDKVMVTVDAIKKIEEML 204 >gi|254391392|ref|ZP_05006595.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] gi|197705082|gb|EDY50894.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 4 MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ + Sbjct: 64 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 123 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ +V TK T F + L++ + D L+ARN+P +++L Sbjct: 124 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V +++A E Sbjct: 184 LNTYDVIRSEDVVFTQAAFETF 205 >gi|312870511|ref|ZP_07730630.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3] gi|311093973|gb|EFQ52298.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3] Length = 207 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I ++ +F ++P Q + Q R G K RS V+ Sbjct: 1 MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + LP+KVR LA++ ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+D L KTK L+++ +I D+N L+ARN+ N ++ G Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALIVVTDDDKNAALSARNLANATVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ ++ K++++KSA+ +E+ Sbjct: 181 VNILNVADAQKVIITKSALSQVEEVL 206 >gi|167854922|ref|ZP_02477698.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755] gi|219871731|ref|YP_002476106.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165] gi|254803737|sp|B8F756|RL4_HAEPS RecName: Full=50S ribosomal protein L4 gi|167853989|gb|EDS25227.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755] gi|219691935|gb|ACL33158.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165] Length = 200 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V +SVSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGATA-----LSVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D KTK LV + + + L++ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKDMALTDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITVDAVKQIEEML 199 >gi|182436626|ref|YP_001824345.1| 50S ribosomal protein L4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777248|ref|ZP_08236513.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1] gi|178465142|dbj|BAG19662.1| putative 50S ribosomal protein L4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657581|gb|EGE42427.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 101/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVDLPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|312144246|ref|YP_003995692.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus'] gi|311904897|gb|ADQ15338.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus'] Length = 209 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G + ++ +++ +F K + ++ +V+ Q +R G + +K R+ V Sbjct: 1 MPQVTKFDQSGNELDMVDLNDSVFNNKINEHVVHQVVNAQLAARRSGTASTKNRANVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S + GGG FGP P L KK++ LAL+ L+DK Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWVGGGVTFGPSPRSYDKKLTKKMKRLALKSVLTDKVNR 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D + E KTK ++ L+L ++I + D N L+ARNIPN+ L Sbjct: 121 DEVVLVDKIALSEPKTKAVIKILADLNLEDKKVLIVMPEKDDNLYLSARNIPNVKTLLAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L ++ + A++ +E+ Sbjct: 181 SINAYDLLDNEMIIFIEEAVKMIEEVL 207 >gi|258651364|ref|YP_003200520.1| 50S ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233] gi|258554589|gb|ACV77531.1| ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233] Length = 248 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G + + ++IF + ++ +V+ Q R G K+K R EV+ Sbjct: 1 MTTVQITDPAGAAGATVELPDEIFNVPANVPLMHQVVVAQLAAARQGTHKAKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP+P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPLPRDYTQRTPKKMKAAALRGALSDRARG 120 Query: 121 NDIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ V+++L TK + ++ + +++ D + RN+PN++LL Sbjct: 121 GNVHVLESLSVDGTPSTKKALGALHSVSTARKILVVLQFGDEIGWKSLRNVPNVHLLWAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A+E Sbjct: 181 QLNTYDVLDSDDVVFTRAALEEF 203 >gi|318607743|emb|CBY29241.1| LSU ribosomal protein L4p (L1e) [Yersinia enterocolitica subsp. palearctica Y11] Length = 201 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LII G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|290968243|ref|ZP_06559786.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781725|gb|EFD94310.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 207 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S N+ G G I +++ +F ++ + ++ + L Q +R+G +K R V Sbjct: 1 MPKVSTYNITGAKTGEIELNDSVFGVEVNEAVMRQALLRQLANERLGTHSTKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG +GP P +P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARVGSSRSPLWVGGGTVWGPHPRSYAQKMPRKARRLAVKSALSDKVNT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D + KTK +V + + ++ D ARNI + + +G Sbjct: 121 NELFVLDEIKLAAAKTKEVVALIKNFQFTGEKVLFVTDNDEIVIRCARNIEGVKAISTEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L +KL ++KSA+ +E+ Sbjct: 181 VNIFDLLHYTKLFVTKSAVAKIEEVL 206 >gi|329938231|ref|ZP_08287682.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045] gi|329302720|gb|EGG46610.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045] Length = 219 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + GE G + + +IF ++ ++ +V+ Q+ R G K+K R EV Sbjct: 1 MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I V+ +V + TK T F + L++ + D L+ARN+P +++L Sbjct: 121 HDRIHVVTGVVEGETASTKAARTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|300933009|ref|ZP_07148265.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100] Length = 217 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG+ G + + IF + ++ +V+ Q KR G +K R +V G Sbjct: 5 KLDVHTADGKTNGSVELPASIFDAEVSVALMHQVVTAQLAAKRQGTHATKARGDVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ Sbjct: 65 KPWRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRARHAR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+++LV + TK L ++++ + D N + + RN+PN++ L + Sbjct: 125 IHVVEDLVPGQTPSTKSARGFLERLTDRKSVLVVLGREDINSRKSVRNLPNVHTLVSDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205 >gi|296111430|ref|YP_003621812.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154] gi|295832962|gb|ADG40843.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154] Length = 207 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 106/203 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V DG + +++ +FA++P ++ + Q R G K RS V+ Sbjct: 1 MTKVAVLKQDGSQAAELELNDAVFAIEPNNTVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P + + +K LAL+ LS K Sbjct: 61 GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KT+ L ++ + + N L+ARN+ N+ ++ +G Sbjct: 121 GKLVVVDALTFEAPKTQDFKKVLTNLAADTKTLVVVDENNENAILSARNLANVQVMTTKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 INV D++ KLV+ +S+IE ++ Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203 >gi|160902255|ref|YP_001567836.1| 50S ribosomal protein L4 [Petrotoga mobilis SJ95] gi|189029512|sp|A9BHA4|RL4_PETMO RecName: Full=50S ribosomal protein L4 gi|160359899|gb|ABX31513.1| ribosomal protein L4/L1e [Petrotoga mobilis SJ95] Length = 221 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 14/219 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ E G + + ++IF + P +L R + Q KR G + +K RSEV+ Sbjct: 1 MSQIDIYNIQNEKVGTLDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S FR GG FGP P L KK++ LAL+ ALS ++ Sbjct: 61 GRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID----GCQLDRNFQLAARNIPNINLL 176 N+++V+D + ++ +TK + + + ++ + NF+L+ARN+P + ++ Sbjct: 121 NNLIVLDEVKFEKPRTKDVKNILSKFGMEDTKVLFLFPYHQEQYENFKLSARNLPKVKVI 180 Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALEDR 205 V G+NV+D++ K+VL+K + +E+ Sbjct: 181 IADNPGQNKKNVDGLNVFDLINSEKIVLTKEMVNKIEEV 219 >gi|307170893|gb|EFN63004.1| 39S ribosomal protein L4, mitochondrial [Camponotus floridanus] Length = 285 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + NLD + G+I++ I+A P+ I+ + +RWQ + + + +K R+EV Sbjct: 55 QVWLENLDTVEEKKLGLITLHPHIYAAAPRIDIIHQNVRWQKMYRWVCYAHTKTRAEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S +RGGG A GP P + LP R L LS K Sbjct: 115 GGRKPWPQKGTGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFYTRVAGLTSTLSVKL 174 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ +++ L + Y+ + + L +D + N LA I ++NL+ Sbjct: 175 AQDDLHIVNELEIPTSEPSYIEQLIEKRNWGPSVLFVDSYDIMPTNITLATDEIKHVNLM 234 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ + LVL++ A +E++ Sbjct: 235 PVYGLNVYSMLKHNTLVLTEKAARLIEEKL 264 >gi|238752686|ref|ZP_04614157.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380] gi|238783170|ref|ZP_04627196.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970] gi|238709113|gb|EEQ01360.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380] gi|238715966|gb|EEQ07952.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|261866794|ref|YP_003254716.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D11S-1] gi|2500232|sp|P55836|RL4_ACTAC RecName: Full=50S ribosomal protein L4 gi|1841323|dbj|BAA10948.1| ribosomal protein L4 [Actinobacillus actinomycetemcomitans] gi|261412126|gb|ACX81497.1| ribosomal protein L4/L1 family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 200 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D KTK LV + + L L + LII LD N LAARN+ +++ QGI Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKELALEDVLIIT-ASLDENLFLAARNLYKVDVRDAQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|87122972|ref|ZP_01078833.1| 50S ribosomal protein L4 [Marinomonas sp. MED121] gi|86161740|gb|EAQ63044.1| 50S ribosomal protein L4 [Marinomonas sp. MED121] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 2/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G + G + VSE FA + + ++ +V+ R G K RS+VA G K + Sbjct: 3 LNLTGTE-GTLEVSEVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSDVAGGGRKPWK 61 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKG+GRAR + +R GG F P + KK+ A+R S+ + ++V+ Sbjct: 62 QKGSGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVV 121 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + L + KTK + L++ NALI+ +LD N LAARNIPN+++ I+ + Sbjct: 122 EELSLEAPKTKLFKAKMAELNIENALIV-SAELDENLFLAARNIPNVDVRDAASIDPVSL 180 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ A++ +E+ Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200 >gi|308047992|ref|YP_003911558.1| 50S ribosomal protein L4P [Ferrimonas balearica DSM 9799] gi|307630182|gb|ADN74484.1| LSU ribosomal protein L4P [Ferrimonas balearica DSM 9799] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 109/205 (53%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ + R G K R+EV TG Sbjct: 1 MELVMKDAQ----SALEVSETTFGREFNEALVHQVVVAYAANARQGTRAQKTRAEVTGTG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG +F P + KK+ ALR LS+ + Sbjct: 57 KKPWRQKGTGRARSGTVKSPIWRSGGVSFAAKPQDHGQKVNKKMYRAALRSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + L+L++ LI+ G ++D N LA+RN+ +++ GI Sbjct: 117 RLIVVEKFAVEAPKTKELVGKLKELELNDVLIVTG-EVDENLFLASRNLYKVDVRDADGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E++ Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEKL 200 >gi|93005315|ref|YP_579752.1| 50S ribosomal protein L4 [Psychrobacter cryohalolentis K5] gi|109893625|sp|Q1QDI5|RL4_PSYCK RecName: Full=50S ribosomal protein L4 gi|92392993|gb|ABE74268.1| LSU ribosomal protein L4P [Psychrobacter cryohalolentis K5] Length = 200 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 99/190 (52%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S+ F + + ++ +V+ R G K R+EV+ G K + QKGTGRAR Sbjct: 11 VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG+AF P + +K+ A++ L++ +++++ + KT Sbjct: 71 SIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILVEEISVSGPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L+ S ALI+ ++D N LAARNIP++N+L ++ ++ K++++ Sbjct: 131 KELIAKLGELNASRALIVT-KEVDENLYLAARNIPHVNVLDTSEVDPVSLIAFDKVIMTV 189 Query: 197 SAIEALEDRF 206 A + E+ Sbjct: 190 EAAKQFEEAL 199 >gi|329114216|ref|ZP_08242978.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001] gi|326696292|gb|EGE47971.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001] Length = 204 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 121/205 (59%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ ++ LD G ++ ++IFA+ P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KT L + ++L ++ALI+D +D +F AARN+P I++LP G Sbjct: 121 KLIVLQSASGVD-KTSELAKKLKSLGWTSALIVDAA-VDESFGRAARNLPKIDILPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203 >gi|238913846|ref|ZP_04657683.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-DLDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|162149173|ref|YP_001603634.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|209545083|ref|YP_002277312.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|189029506|sp|A9H3R2|RL4_GLUDA RecName: Full=50S ribosomal protein L4 gi|161787750|emb|CAP57346.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5] gi|209532760|gb|ACI52697.1| ribosomal protein L4/L1e [Gluconacetobacter diazotrophicus PAl 5] Length = 204 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ LD G + ++IF + P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MDYEIKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S Q+R GG GPV + LPKKVR L L ALS K Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + +T L + +AL +ALI+D ++ NF AARN+P I+ LP G Sbjct: 121 KLVVLDA-ATASGRTSELAAKVKALGWKSALIVD-ATVEENFGRAARNLPKIDALPTIGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L ++++ +E L++R Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203 >gi|221133615|ref|ZP_03559920.1| 50S ribosomal protein L4 [Glaciecola sp. HTCC2999] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ + + VS+ F + + ++ +V+ R G K RSEV G Sbjct: 1 MELTLKDAN----SALEVSDATFGREFNEALVHQVVVAFGAGARQGTKAQKTRSEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG+AF P + KK+ A+R LS+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIRSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L+ DL++ LI+ ++D N LA+RN+ +++ VQGI Sbjct: 117 RLIVVEKFGVEAPKTKELLNALSTYDLNDVLIVT-PEVDENLFLASRNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLITADAVKQLEEAL 200 >gi|227115271|ref|ZP_03828927.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis carolinensis] Length = 314 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 2/204 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+++ D G+ + D+FA+ P+ IL V WQ KRI +K+K R+EV G K Sbjct: 90 SLKHYDARHMGLADLHPDVFAVMPRIDILHTVATWQRNFKRISYAKTKTRAEVRGGGRKP 149 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG A GP P + LP KVR L+ AL+ K +++ Sbjct: 150 WRQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYFYMLPMKVRVQGLKVALTVKLAQDNL 209 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+D+L +YL+ R + L + ++ N + AA ++ I +LP+ G+N Sbjct: 210 HVVDSLEIPTSDPQYLMDLARYRHWGTSVLFVHVNEIPENIKSAANDLKTITILPITGLN 269 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 V+ +L+ LVL+ + LE + Sbjct: 270 VHSMLKYETLVLTLDTVSFLEKKL 293 >gi|260891593|ref|ZP_05902856.1| hypothetical protein GCWU000323_02808 [Leptotrichia hofstadii F0254] gi|260858701|gb|EEX73201.1| ribosomal protein L4/L1 family protein [Leptotrichia hofstadii F0254] Length = 214 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ LDG G I V+ D+F ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKINE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRN-----FQLAARNIPNI 173 +++V+D+ + KTK + +AL+ L I D L+ RNI + Sbjct: 121 GNVIVLDDFTLETPKTKTFINFAKALNFDGVKQLYITNDDTDNIDRDYFLYLSTRNIEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + +++Y +++ K++L+K A+ +E+ Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEEVL 213 >gi|317153957|ref|YP_004122005.1| 50S ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2] gi|316944208|gb|ADU63259.1| ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2] Length = 206 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V + + + G I ++ ++F ++ Q IL V+R Q KR G +K R + Sbjct: 1 MAKLQVVDQNNQKVGDIELAPEVFEVEIQPEILNLVVRAQRAAKRSGTHATKTRGMKSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KK+R LAL+ ALS + Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWRGGAVLFGPQPRDYSFKVNKKIRKLALQMALSSRVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+ ++ E KTK L L LI+ D N L+ARN+P I ++ Sbjct: 121 DKVTVVKSIDLAEIKTKAFAAVVEKLGLGKTLIVL-KDADLNLALSARNVPGIKVIEADK 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+L +LV+ ++A + +++R K Sbjct: 180 LNVYDVLLYPELVMFEAAAQDVQERLK 206 >gi|117924156|ref|YP_864773.1| 50S ribosomal protein L4P [Magnetococcus sp. MC-1] gi|166234681|sp|A0L5X4|RL4_MAGSM RecName: Full=50S ribosomal protein L4 gi|117607912|gb|ABK43367.1| LSU ribosomal protein L4P [Magnetococcus sp. MC-1] Length = 207 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 117/206 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI++ V++ + ++ ++E +F + + +L + +Q ++R+G + GRS+V Sbjct: 1 MIQVPVKDANNQEVRSTELNESVFGREIRADLLGMAVNYQLAKRRLGTATVLGRSDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + QFR GG FGP H L KKVR LAL+ ALS K S Sbjct: 61 GKKPYRQKGTGNARQGTIRAPQFRTGGIVFGPQQRDYSHKLNKKVRKLALQTALSVKASS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK + L + + + +L L+ARNIPN+ + V G Sbjct: 121 EEMVVVDKLELASIKTKEMKALLSTLGAARSTFLVVKELSNEIVLSARNIPNVMVADVDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LR KLV+++ A+ +LE++ Sbjct: 181 VNVYDLLRYEKLVITEEAVRSLEEKL 206 >gi|197287069|ref|YP_002152941.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320] gi|227354933|ref|ZP_03839347.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906] gi|226730708|sp|B4F1I5|RL4_PROMH RecName: Full=50S ribosomal protein L4 gi|194684556|emb|CAR46382.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320] gi|227165015|gb|EEI49854.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906] Length = 201 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ ++D N LAARN+ +++ I Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVT-AEVDENLYLAARNLYKVDVRDAATI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|291280147|ref|YP_003496982.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1] gi|290754849|dbj|BAI81226.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1] Length = 209 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N + + +++ + I + + ++ V+ Q +R G +K R EV Sbjct: 1 MAVIEVLNQENKKVKEVNLDDSIISYPVKPWLMHEVVVMQLACRRAGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + +PKK AL+ AL K Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWVGGGTIFGPKPRDYSYKMPKKKVKNALKSALRAKLED 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + +I++L + KTK V + + +++ +LD A RNIP + LL V+G Sbjct: 121 NALKIIESLNVENGKTKEAVAILKNFGANRKVLVVYNELDEKVIRAFRNIPYVKLLNVKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++ +++ + + + + Sbjct: 181 LNVYDLINARTILMLEDCLPRITEVL 206 >gi|27364214|ref|NP_759742.1| 50S ribosomal protein L4 [Vibrio vulnificus CMCP6] gi|37678560|ref|NP_933169.1| 50S ribosomal protein L4 [Vibrio vulnificus YJ016] gi|320157600|ref|YP_004189979.1| 50S ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O] gi|46577170|sp|Q7MPI7|RL4_VIBVY RecName: Full=50S ribosomal protein L4 gi|46577257|sp|Q8DE40|RL4_VIBVU RecName: Full=50S ribosomal protein L4 gi|27360332|gb|AAO09269.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus CMCP6] gi|37197300|dbj|BAC93140.1| ribosomal protein L4 [Vibrio vulnificus YJ016] gi|319932912|gb|ADV87776.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O] Length = 200 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKG-----AAALTVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 175 DPVSLIAFNKVLMTADAVKQVEEML 199 >gi|282857361|ref|ZP_06266598.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455] gi|282584861|gb|EFB90192.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455] Length = 207 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N+ GE G ++S+++F + +V+ Q R G + +K R EV Sbjct: 1 MPVIKIMNISGEVVGEKTLSDEVFGASVHVSAMHQVVVAQLAHARQGTASTKMRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S + GGG GP P + KKVR+LA+R ALS + Sbjct: 61 GKKPWKQKHTGRARAGSSRSPLWVGGGVVHGPKPRSYDLKVNKKVRALAMRSALSMRVIE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++N + TK + +L L + Q D N +A NIP +L V Sbjct: 121 QSLCAVENFGFEAPSTKKMKGFIDSLKAKKILFLLD-QRDENVVRSASNIPGAKVLHVDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INV D++ +V + + +E LE+ + Sbjct: 180 INVLDLVHHDHVVATPAVLEKLEEVY 205 >gi|327332710|gb|EGE74444.1| 50S ribosomal protein L4 [Propionibacterium acnes HL097PA1] Length = 301 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|33152957|ref|NP_874310.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP] gi|46577205|sp|Q7VKD3|RL4_HAEDU RecName: Full=50S ribosomal protein L4 gi|33149182|gb|AAP96699.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP] Length = 200 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK+LV + + L L++ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFEVEAPKTKFLVQKLKDLALNDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITTDAVKQIEEML 199 >gi|290477191|ref|YP_003470106.1| 50S ribosomal subunit protein L4 [Xenorhabdus bovienii SS-2004] gi|289176539|emb|CBJ83348.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Xenorhabdus bovienii SS-2004] Length = 201 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ Sbjct: 57 KKPWRQKGTGRARAGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LI+ G ++D N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMALQDVLIVTG-EVDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|313836022|gb|EFS73736.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA2] gi|314929561|gb|EFS93392.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL044PA1] gi|314970554|gb|EFT14652.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA3] gi|328906229|gb|EGG26004.1| ribosomal protein L4/L1 family protein [Propionibacterium sp. P08] Length = 301 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDVFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I ++ +LV + TK L + +++ + D L+ RN+ +++L + Sbjct: 126 IFIVTSLVDGDKPSTKQAKAVLSGLAELSKVLVVLARSDEVDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ +A Sbjct: 186 NTYDVVNSRTIVFSQAGFDAF 206 >gi|300721366|ref|YP_003710637.1| 50S ribosomal subunit protein L4 [Xenorhabdus nematophila ATCC 19061] gi|297627854|emb|CBJ88400.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Xenorhabdus nematophila ATCC 19061] Length = 201 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK LV + + + L + LI+ G ++D N LAARN+ +++ GI Sbjct: 117 RLIIVEKFSVEAPKTKLLVQKLKEMALEDVLIVTG-EVDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200 >gi|296119210|ref|ZP_06837780.1| ribosomal protein L4/L1 family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967836|gb|EFG81091.1| ribosomal protein L4/L1 family protein [Corynebacterium ammoniagenes DSM 20306] Length = 221 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V+ +G+ G + + +IF + ++ +V+ Q R G +K R EV G Sbjct: 5 KLDVQTAEGKTNGSVELPAEIFDAEVSIALMHQVVNAQLAAARQGTHSTKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPKPRDYAQRTPKKMIKAALFGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI+ LV+ + TK L +++ + D N + +A N+PN+++L + Sbjct: 125 IHVIEELVAGQTPSTKSAKAFIERLTDRKTILLVVGREDLNARRSANNLPNVHILDAGQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V S A+ + +R Sbjct: 185 NTYDVLNADDVVFSVEALHSFINR 208 >gi|149184312|ref|ZP_01862630.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21] gi|148831632|gb|EDL50065.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21] Length = 207 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G I +++D+F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKASGDIELNDDVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G +L KK+R+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRGAPIFIGGGKAHGARKRDFEQSLNKKIRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L K+ KTK L F S LIIDG ++ F+ AA N+P +N+LP G Sbjct: 121 -LVVVDSLELKDAKTKALKGHFDKNGWSGKVLIIDGESVNDGFKKAAGNLPGVNVLPAMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEGRF 205 >gi|329118599|ref|ZP_08247303.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200] gi|327465334|gb|EGF11615.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200] Length = 206 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ G +SVS+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKVINAQGQVSGSLSVSDALFAREYNEALVHQLVTAYLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VI+ L + KTK + + L L + QLD N L++RN+PN+ +L Q Sbjct: 121 DRLCVIEQLAAATPKTKDFAEQVKNFGLEQVLFVT-KQLDENVYLSSRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K AIE LE+++ Sbjct: 180 IDPYSLLRYKKVVVTKDAIEQLEEQW 205 >gi|312889366|ref|ZP_07748920.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603] gi|311298243|gb|EFQ75358.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603] Length = 208 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNVSGKETGASVHLPESVFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKALD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK + L+LS+ ++ + N L++RN+ ++ Sbjct: 121 NSIVVLEDFTFDAVKTKTYIQFVADLNLSDEKTLLVLPSANNNIYLSSRNLKKSKVITAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ YD+L KL+L+ +++ LE+ Sbjct: 181 QLSTYDVLNAGKLLLTTDSVKTLEEAL 207 >gi|304399290|ref|ZP_07381156.1| ribosomal protein L4/L1e [Pantoea sp. aB] gi|308188356|ref|YP_003932487.1| 50S ribosomal protein L4 [Pantoea vagans C9-1] gi|304353216|gb|EFM17597.1| ribosomal protein L4/L1e [Pantoea sp. aB] gi|308058866|gb|ADO11038.1| 50S ribosomal protein L4 [Pantoea vagans C9-1] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVESFAVEAPKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDASGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|238758765|ref|ZP_04619939.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236] gi|238792939|ref|ZP_04636569.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909] gi|238703062|gb|EEP95605.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236] gi|238727793|gb|EEQ19317.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL063PA1] Length = 301 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSEAGLDAF 206 >gi|72163044|ref|YP_290701.1| 50S ribosomal protein L4 [Thermobifida fusca YX] gi|109893650|sp|Q47LJ4|RL4_THEFY RecName: Full=50S ribosomal protein L4 gi|71916776|gb|AAZ56678.1| LSU ribosomal protein L4P [Thermobifida fusca YX] Length = 222 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 3/200 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V++ +G KG + + ++IFA K ++ +V+ Q R G +K R EV Sbjct: 1 MATIEVKDREGAAKGSVELPDEIFAQKVNIPLIHQVVVAQQAAGRQGTHSTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALS++ Sbjct: 61 GKKPYRQKGTGRARQGSVRAPQFTGGGTVHGPKPRDYAQRTPKKMKAAALRGALSNRAQH 120 Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 I V+ V ++ TK + R + S+ +++ + D++ +LA RN+P +++L Sbjct: 121 GRIHVVSEFVPEDVTTKRTQTALKTLRKITDSDKVLVVLSREDQHNRLALRNLPEVHILD 180 Query: 178 VQGINVYDILRCSKLVLSKS 197 +N YD+L +V +++ Sbjct: 181 ANQVNTYDVLYADDIVFTEA 200 >gi|307132838|ref|YP_003884854.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937] gi|306530367|gb|ADN00298.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + L L + LII G +LD N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLFKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|241667386|ref|ZP_04754964.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875935|ref|ZP_05248645.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841956|gb|EET20370.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 207 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G + GV+ V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLRLETPKTKEFKAIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|331005013|ref|ZP_08328420.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989] gi|330421179|gb|EGG95438.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989] Length = 205 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ELS+ G G + VSE F + Q ++ + + R G K R+ V+ Sbjct: 1 MMELSISTPKGAK-GTVEVSELTFGKEFNQDLVHQAVVSYQAAARQGSKAQKNRAAVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKG+GRAR + +R GG F P + +K+ A+R LS+ Sbjct: 60 GAKPWKQKGSGRARAGTSRGPIWRSGGVTFAAQPRNYEQKINRKMYRAAMRCILSELARQ 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V++ + KTK L++ D++ ALI+ +++ N LA+RN+ ++++ QG Sbjct: 120 DRLIVVEPIQLDAPKTKGLISYLAQFDVAEALIVT-EEVNANLYLASRNLHKVDVIDAQG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N ++ +++++ A++ +E+ Sbjct: 179 VNPLSLVGFDRVMITVDALKKVEEAL 204 >gi|108797987|ref|YP_638184.1| 50S ribosomal protein L4 [Mycobacterium sp. MCS] gi|119867083|ref|YP_937035.1| 50S ribosomal protein L4 [Mycobacterium sp. KMS] gi|126433649|ref|YP_001069340.1| 50S ribosomal protein L4 [Mycobacterium sp. JLS] gi|122977349|sp|Q1BDA6|RL4_MYCSS RecName: Full=50S ribosomal protein L4 gi|166234689|sp|A3PVC2|RL4_MYCSJ RecName: Full=50S ribosomal protein L4 gi|166234690|sp|A1UBN7|RL4_MYCSK RecName: Full=50S ribosomal protein L4 gi|108768406|gb|ABG07128.1| LSU ribosomal protein L4P [Mycobacterium sp. MCS] gi|119693172|gb|ABL90245.1| LSU ribosomal protein L4P [Mycobacterium sp. KMS] gi|126233449|gb|ABN96849.1| LSU ribosomal protein L4P [Mycobacterium sp. JLS] Length = 219 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 2/203 (0%) Query: 1 MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + V+ G G + + ++F ++ ++ +V+ Q KR G +K R EV+ Sbjct: 1 MATTIEVKTPAGTTDGSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I + LV + TK L +++ + D + + RN+P ++++ Sbjct: 121 NGRIHAVTELVEGQTPSTKSAKAFLSTLTERKQVLVVIGRADETSERSVRNLPGVHIISP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+L+ +V S A+ A Sbjct: 181 DQLNTYDVLKADDVVFSVEALNA 203 >gi|227328948|ref|ZP_03832972.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|251793828|ref|YP_003008560.1| 50S ribosomal protein L4 [Aggregatibacter aphrophilus NJ8700] gi|315633456|ref|ZP_07888746.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393] gi|247535227|gb|ACS98473.1| ribosomal protein L4/L1 family [Aggregatibacter aphrophilus NJ8700] gi|315477498|gb|EFU68240.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393] Length = 200 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D KTK LV + + L L + LII LD N LAARN+ +++ QGI Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKELALEDVLIIT-ASLDENLFLAARNLYKVDVRDAQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|238788909|ref|ZP_04632699.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641] gi|238797237|ref|ZP_04640738.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969] gi|238718874|gb|EEQ10689.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969] gi|238722936|gb|EEQ14586.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LI+ +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVT-SELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|301059224|ref|ZP_07200161.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2] gi|300446659|gb|EFK10487.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2] Length = 207 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 117/206 (56%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V NL E + +++D+F++ ++ +L +V+ Q R G + SK R+ V + Sbjct: 1 MTVLDVYNLQKEKVSEVELNKDVFSVPIKKHVLHQVVVAQLAGHRTGTAASKNRAAVKGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K++ QKGTGRAR S +GGG AFGP P +PKKVR ALR AL+DK Sbjct: 61 GAKLWRQKGTGRARVGKASSPTRKGGGVAFGPSPRSYDQKIPKKVRKSALRMALTDKVQC 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VID+ E KTK+ V D+ ALI+ + N + +++N+P I ++ +G Sbjct: 121 EQLFVIDDFTLPEIKTKHFVEAMNQFDVQKALIVT-NEKSENLEKSSKNVPKIKVMRSEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ L L + A++ +++ Sbjct: 180 LNVYDILKHDTLFLERMAVDKIQEAL 205 >gi|239787564|emb|CAX84032.1| 50S ribosomal protein L4 [uncultured bacterium] Length = 217 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 119/205 (58%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIE V + + +++S F + + +L RV+ +Q ++R+G + +K R EV Sbjct: 1 MIEFPVVDAANQTSHTVNLSSHAFGCEVRGDLLTRVVHYQLAKRRLGTASTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR + Q+R GG FGP P + +K R+L LR ALS K + Sbjct: 61 GHKPYRQKGTGNARQGTIRAPQYRTGGVVFGPHPRDYSVKMNRKERALGLRTALSAKREA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ + E KT+ ++ L+ +N+++I + D + +ARN+P ++++ V G Sbjct: 121 EELIVLTDFGLTEIKTRSMLQVLTRLNAANSVLIVLPESDERIERSARNLPGVDVIQVDG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NVYD+L KL+++++A++ LE R Sbjct: 181 VNVYDLLVHEKLLMTEAALQKLEAR 205 >gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax] Length = 302 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ + + E G++ + D+FAL + IL V WQ KRI + +K RSEV G K Sbjct: 77 TLVSHESEPLGLVDLHPDVFALPARIDILHEVELWQRNYKRISHANTKVRSEVRGGGKKP 136 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG + GP P + +P KVR L+ ALS K N + Sbjct: 137 WNQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMIPIKVRVQGLKIALSSKLAQNYL 196 Query: 124 MVIDNLVSKECKTKYLVTRFRALDL-SNALIID-GCQLDRNFQLAARNIPNINLLPVQGI 181 V+D+L +YLV R + L++D L N A + +N++P G+ Sbjct: 197 HVVDSLNIPTPDPQYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVIPAIGL 256 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ LVL+ A++ LE++ Sbjct: 257 NVHSMLKHEVLVLTLEAVKFLENKL 281 >gi|308272978|emb|CBX29582.1| 50S ribosomal protein L4 [uncultured Desulfobacterium sp.] Length = 207 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 123/206 (59%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V NL+GE + +++ IF + + +L V+ Q +R G + K RS+V + Sbjct: 1 MSLIDVYNLNGEKVSQLELTDSIFNIPVKPSVLHEVVTMQLACRRAGSASVKHRSDVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTGRAR RGGG FGP P + +PKK++ LAL+ ALS K + Sbjct: 61 TRKLFRQKGTGRARRGDIKSPLLRGGGSIFGPDPRSYSYKVPKKIKKLALKMALSSKTIN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N+++VID +E KTK + L + ALII +L+ + +L++RN+P+I ++ +G Sbjct: 121 NNLIVIDKFELEEAKTKNFIAVINTLKIKKALIIT-EKLNESLELSSRNVPDIKVMRFEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ KL+L +++I+ +E R Sbjct: 180 LNVYDILKYDKLILLETSIKGIEGRL 205 >gi|254506493|ref|ZP_05118635.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16] gi|219550667|gb|EED27650.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16] Length = 197 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + + ++ +V+ + R G K RSEV+ G+K + QKGTGRAR Sbjct: 8 LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + +R GG F P + KK+ A++ LS+ ++V+DN + KT Sbjct: 68 TIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVDNFSVEAPKT 127 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+L++ALI+ ++D N LAARN+ ++ V GI+ ++ K+V++ Sbjct: 128 KELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGIDPVSLIAFDKVVMTA 186 Query: 197 SAIEALEDRF 206 A++ +E+ Sbjct: 187 EAVKQVEEML 196 >gi|315109231|gb|EFT81207.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL030PA2] Length = 301 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|322831073|ref|YP_004211100.1| ribosomal protein L4/L1e [Rahnella sp. Y9602] gi|321166274|gb|ADW71973.1| ribosomal protein L4/L1e [Rahnella sp. Y9602] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVVKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|311896569|dbj|BAJ28977.1| putative ribosomal protein L4 [Kitasatospora setae KM-6054] Length = 225 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPAGDKAGSLELPAEIFDAKVSVPLMHQVVVAQLAAARQGTHKVKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+ + ALR AL+D+ Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMIAAALRSALTDRARH 120 Query: 121 NDIMVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+ + ++ TK F + L++ + D L+ARN+PN+++L Sbjct: 121 ERIHVVTGVTATEAPSTKAAKVLFGKISERKNLLLVVEREDELGILSARNLPNVHILDAG 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E Sbjct: 181 QLNTYDVLVSDDVVFTQAAFERF 203 >gi|227538717|ref|ZP_03968766.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300] gi|300770250|ref|ZP_07080129.1| ribosomal protein L4/L1 family protein [Sphingobacterium spiritivorum ATCC 33861] gi|227241636|gb|EEI91651.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300] gi|300762726|gb|EFK59543.1| ribosomal protein L4/L1 family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 209 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V NL G++ G + + E +F L+P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVLNLSGKETGAKVQLPESVFGLEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR S F GGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TRKLHKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+D + KTK V+ AL++++ ++ D N L++RN+ ++ Sbjct: 121 NNIVVLDAVSFDTIKTKNYVSLVAALNVADEKTLLVLPAYDNNVYLSSRNLKKAKVVSAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L +KL+L+ +++ LE+ F Sbjct: 181 QLNTYDVLNATKLLLTTDSVKTLEEAF 207 >gi|116667437|pdb|2GYA|C Chain C, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 gi|116667489|pdb|2GYC|C Chain C, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 Length = 198 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 5/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEE 198 >gi|269796254|ref|YP_003315709.1| 50S ribosomal protein L4P [Sanguibacter keddieii DSM 10542] gi|269098439|gb|ACZ22875.1| LSU ribosomal protein L4P [Sanguibacter keddieii DSM 10542] Length = 234 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + ++F ++ ++ +V+ Q R G +K R EV G Sbjct: 6 TVDVIDAKGKKAGTADLPAEVFDVQTNIPLIHQVVVAQLAAARQGTHDTKNRGEVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 66 KPYKQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARAGR 125 Query: 123 IMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ TK +T L +++ + D + RN ++LL + Sbjct: 126 IHVVTGFGIDGSPSTKQALTSLANLAPRRNVLVVLERGDELTVKSLRNAEQVHLLVADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V +K A++A Sbjct: 186 NTYDVLVSDDVVFTKGALDAF 206 >gi|56707479|ref|YP_169375.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89255671|ref|YP_513032.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica LVS] gi|110669950|ref|YP_666507.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC198] gi|115314172|ref|YP_762895.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica OSU18] gi|118496853|ref|YP_897903.1| 50S ribosomal protein L4 [Francisella tularensis subsp. novicida U112] gi|134302584|ref|YP_001122555.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis WY96-3418] gi|156501621|ref|YP_001427686.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009888|ref|ZP_02274819.1| ribosomal protein L4/L1 family [Francisella tularensis subsp. holarctica FSC200] gi|254370828|ref|ZP_04986833.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC033] gi|290953210|ref|ZP_06557831.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica URFT1] gi|295313578|ref|ZP_06804167.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica URFT1] gi|81597928|sp|Q5NHW7|RL4_FRATT RecName: Full=50S ribosomal protein L4 gi|109893596|sp|Q2A5G9|RL4_FRATH RecName: Full=50S ribosomal protein L4 gi|122325786|sp|Q0BNS6|RL4_FRATO RecName: Full=50S ribosomal protein L4 gi|123063580|sp|Q14JB9|RL4_FRAT1 RecName: Full=50S ribosomal protein L4 gi|166234667|sp|A7N9S7|RL4_FRATF RecName: Full=50S ribosomal protein L4 gi|166234668|sp|A0Q4I4|RL4_FRATN RecName: Full=50S ribosomal protein L4 gi|166234669|sp|A4IZT3|RL4_FRATW RecName: Full=50S ribosomal protein L4 gi|56603971|emb|CAG44959.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89143502|emb|CAJ78678.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica LVS] gi|110320283|emb|CAL08342.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC198] gi|115129071|gb|ABI82258.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica OSU18] gi|118422759|gb|ABK89149.1| 50S ribosomal protein L4 [Francisella novicida U112] gi|134050361|gb|ABO47432.1| ribosomal protein L4 [Francisella tularensis subsp. tularensis WY96-3418] gi|151569071|gb|EDN34725.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis FSC033] gi|156252224|gb|ABU60730.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|282158623|gb|ADA78014.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis NE061598] gi|328676322|gb|AEB27192.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida Fx1] Length = 207 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|183600752|ref|ZP_02962245.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827] gi|188019730|gb|EDU57770.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827] Length = 201 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|50843317|ref|YP_056544.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202] gi|81611203|sp|Q6A6M7|RL4_PROAC RecName: Full=50S ribosomal protein L4 gi|50840919|gb|AAT83586.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202] gi|315106072|gb|EFT78048.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL030PA1] Length = 301 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|289427743|ref|ZP_06429455.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J165] gi|295131386|ref|YP_003582049.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137] gi|289159234|gb|EFD07426.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J165] gi|291376076|gb|ADD99930.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137] gi|313763237|gb|EFS34601.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL013PA1] gi|313773096|gb|EFS39062.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL074PA1] gi|313793259|gb|EFS41317.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA1] gi|313801097|gb|EFS42365.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA2] gi|313808838|gb|EFS47292.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA2] gi|313810368|gb|EFS48082.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL083PA1] gi|313812296|gb|EFS50010.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL025PA1] gi|313816573|gb|EFS54287.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL059PA1] gi|313818018|gb|EFS55732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL046PA2] gi|313819931|gb|EFS57645.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA1] gi|313823421|gb|EFS61135.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA2] gi|313828365|gb|EFS66079.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL063PA2] gi|313830135|gb|EFS67849.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL007PA1] gi|313832594|gb|EFS70308.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL056PA1] gi|313837950|gb|EFS75664.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL086PA1] gi|314914333|gb|EFS78164.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA4] gi|314917653|gb|EFS81484.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA1] gi|314919615|gb|EFS83446.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA3] gi|314925787|gb|EFS89618.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL036PA3] gi|314930206|gb|EFS94037.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL067PA1] gi|314957187|gb|EFT01291.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL027PA1] gi|314957763|gb|EFT01866.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA1] gi|314960867|gb|EFT04968.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA2] gi|314963541|gb|EFT07641.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL082PA1] gi|314969876|gb|EFT13974.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL037PA1] gi|314973016|gb|EFT17112.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL053PA1] gi|314975512|gb|EFT19607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL045PA1] gi|314979746|gb|EFT23840.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL072PA2] gi|314984888|gb|EFT28980.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA1] gi|314986054|gb|EFT30146.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA2] gi|314988670|gb|EFT32761.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL005PA3] gi|315077164|gb|EFT49231.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL053PA2] gi|315079849|gb|EFT51825.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL078PA1] gi|315083217|gb|EFT55193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL027PA2] gi|315086829|gb|EFT58805.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL002PA3] gi|315089922|gb|EFT61898.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL072PA1] gi|315096756|gb|EFT68732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL038PA1] gi|315097984|gb|EFT69960.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL059PA2] gi|315100627|gb|EFT72603.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL046PA1] gi|327325170|gb|EGE66976.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA3] gi|327325200|gb|EGE67005.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA2] gi|327444001|gb|EGE90655.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL043PA1] gi|327449371|gb|EGE96025.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL013PA2] gi|327449401|gb|EGE96055.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL043PA2] gi|327451422|gb|EGE98076.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA3] gi|327451603|gb|EGE98257.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL092PA1] gi|327451890|gb|EGE98544.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL083PA2] gi|328752104|gb|EGF65720.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL087PA1] gi|328755500|gb|EGF69116.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL025PA2] gi|328756284|gb|EGF69900.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL020PA1] gi|328761382|gb|EGF74909.1| 50S ribosomal protein L4 [Propionibacterium acnes HL099PA1] Length = 301 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|309973731|gb|ADO96932.1| 50S ribosomal protein L4 [Haemophilus influenzae R2846] Length = 200 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L + +ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKGLAVEDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199 >gi|163847924|ref|YP_001635968.1| 50S ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl] gi|222525804|ref|YP_002570275.1| 50S ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl] gi|163669213|gb|ABY35579.1| ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl] gi|222449683|gb|ACM53949.1| ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl] Length = 222 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ N GE G I VS+ IF ++P ++ + + Q+ R+G ++GR EV + Sbjct: 1 MQATLYNQAGEQVGAIEVSDYIFGIEPNVAVMHQYVVMQNANARLGTHNTRGRGEVKGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P A+P+K+R L +R ALS KF ++ Sbjct: 61 RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRLAMPRKMRRLGVRSALSAKFAAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQ--LDRNFQLAARNIPNINLLP 177 I +D L + +TK + +A L L++ + + N + +A N+P + L Sbjct: 121 QIRFVDELTFERPRTKDFIAFLKAHGLADKKTLVVIDSKSPANENLRRSANNLPQVKTLL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L +V+ K+A+E +E Sbjct: 181 AHYLNVRDLLVYDHIVMPKAAVEVVE 206 >gi|161616465|ref|YP_001590430.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|296105027|ref|YP_003615173.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|161365829|gb|ABX69597.1| hypothetical protein SPAB_04280 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|295059486|gb|ADF64224.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 8 LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +R GG F P + KK+ AL+ LS+ + ++V++ + KT Sbjct: 68 SIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKT 127 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V++ Sbjct: 128 KLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTA 186 Query: 197 SAIEALEDRF 206 A++ +E+ Sbjct: 187 DAVKQVEEML 196 >gi|22127861|ref|NP_671284.1| 50S ribosomal protein L4 [Yersinia pestis KIM 10] gi|45440068|ref|NP_991607.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str. 91001] gi|108809253|ref|YP_653169.1| 50S ribosomal protein L4 [Yersinia pestis Antiqua] gi|108814018|ref|YP_649785.1| 50S ribosomal protein L4 [Yersinia pestis Nepal516] gi|145597453|ref|YP_001161528.1| 50S ribosomal protein L4 [Yersinia pestis Pestoides F] gi|150260742|ref|ZP_01917470.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125] gi|153948290|ref|YP_001402862.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758] gi|161760556|ref|YP_072178.2| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953] gi|162418449|ref|YP_001605176.1| 50S ribosomal protein L4 [Yersinia pestis Angola] gi|165927876|ref|ZP_02223708.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. F1991016] gi|166010562|ref|ZP_02231460.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213330|ref|ZP_02239365.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398762|ref|ZP_02304286.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418684|ref|ZP_02310437.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425739|ref|ZP_02317492.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022545|ref|YP_001719050.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis YPIII] gi|186897183|ref|YP_001874295.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis PB1/+] gi|218927416|ref|YP_002345291.1| 50S ribosomal protein L4 [Yersinia pestis CO92] gi|229836308|ref|ZP_04456475.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A] gi|229840068|ref|ZP_04460227.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842150|ref|ZP_04462305.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. India 195] gi|229904550|ref|ZP_04519661.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516] gi|270488234|ref|ZP_06205308.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27] gi|294502290|ref|YP_003566352.1| 50S ribosomal protein L4 [Yersinia pestis Z176003] gi|46397669|sp|P60730|RL4_YERPE RecName: Full=50S ribosomal protein L4 gi|46397670|sp|P60731|RL4_YERPS RecName: Full=50S ribosomal protein L4 gi|122382705|sp|Q1C2U8|RL4_YERPA RecName: Full=50S ribosomal protein L4 gi|122384011|sp|Q1CCU5|RL4_YERPN RecName: Full=50S ribosomal protein L4 gi|166199926|sp|A4TGZ3|RL4_YERPP RecName: Full=50S ribosomal protein L4 gi|166990955|sp|A7FNN4|RL4_YERP3 RecName: Full=50S ribosomal protein L4 gi|226731449|sp|B2K5M9|RL4_YERPB RecName: Full=50S ribosomal protein L4 gi|226731450|sp|A9R8Z7|RL4_YERPG RecName: Full=50S ribosomal protein L4 gi|226731451|sp|B1JIW2|RL4_YERPY RecName: Full=50S ribosomal protein L4 gi|21960996|gb|AAM87535.1|AE014002_8 50S ribosomal subunit protein L4 [Yersinia pestis KIM 10] gi|48646|emb|CAA32543.1| ribosomal protein L4 (AA 1 - 201) [Yersinia pseudotuberculosis] gi|45434923|gb|AAS60484.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str. 91001] gi|108777666|gb|ABG20185.1| LSU ribosomal protein L4P [Yersinia pestis Nepal516] gi|108781166|gb|ABG15224.1| LSU ribosomal protein L4P [Yersinia pestis Antiqua] gi|115346027|emb|CAL18893.1| 50S ribosomal protein L4 [Yersinia pestis CO92] gi|145209149|gb|ABP38556.1| LSU ribosomal protein L4P [Yersinia pestis Pestoides F] gi|149290150|gb|EDM40227.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125] gi|152959785|gb|ABS47246.1| ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758] gi|162351264|gb|ABX85212.1| ribosomal protein L4 [Yersinia pestis Angola] gi|165920152|gb|EDR37453.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990652|gb|EDR42953.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205628|gb|EDR50108.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. B42003004] gi|166962678|gb|EDR58699.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051266|gb|EDR62674.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055429|gb|EDR65223.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749079|gb|ACA66597.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis YPIII] gi|186700209|gb|ACC90838.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis PB1/+] gi|229678668|gb|EEO74773.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516] gi|229690460|gb|EEO82514.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. India 195] gi|229696434|gb|EEO86481.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706376|gb|EEO92383.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A] gi|262360370|gb|ACY57091.1| 50S ribosomal protein L4 [Yersinia pestis D106004] gi|262364322|gb|ACY60879.1| 50S ribosomal protein L4 [Yersinia pestis D182038] gi|270336738|gb|EFA47515.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27] gi|294352749|gb|ADE63090.1| 50S ribosomal protein L4 [Yersinia pestis Z176003] gi|320013343|gb|ADV96914.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 201 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVMKDAPGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|332018616|gb|EGI59197.1| 39S ribosomal protein L4, mitochondrial [Acromyrmex echinatior] Length = 286 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ ++ + G++++ I+A P+ I+ + +RWQ + + + +K R+EV G K Sbjct: 61 NLNTIEEKKLGLVTLHPHIYAAAPRIDIIHQNIRWQRMYRWVSYAHTKTRAEVRGGGRKP 120 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP R L LS K +D+ Sbjct: 121 WPQKGTGRARHGSIRSPLWRGGGVAHGPRSPTPHFYMLPFYTRIAGLTATLSVKLAQDDL 180 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLLPVQGI 181 ++D L + Y+ + + L++D + N LA I ++N++PV G+ Sbjct: 181 HIVDELEIPTSEPSYVEQLIEERNWGPSILLVDSYDIMPTNITLATDKIKHVNIMPVYGL 240 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY +L+ + LVL++ A +E++ Sbjct: 241 NVYSMLKHNTLVLTEKAARLIEEKL 265 >gi|307214236|gb|EFN89342.1| 39S ribosomal protein L4, mitochondrial [Harpegnathos saltator] Length = 285 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + NLD + G +++ IFA P+ I+ + +RWQ + + + +K R+EV Sbjct: 55 QVWLENLDTIKEKKLGFVTLHPHIFAATPRIDIIHQNVRWQKMYRWVCYAHTKTRTEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S +RGGG+A GP P + LP R L LS K Sbjct: 115 GGRKPWPQKGTGRARHGSIRSPLWRGGGRAHGPRSPTPHFYMLPFFTRVAGLTSMLSVKL 174 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ +I+NL + Y+ + + LI+D + +N LA I +INL+ Sbjct: 175 AQDDLHIINNLEIPTSECSYIEQLVEERNWGPSVLIVDSYDIMPKNITLATDEIKHINLM 234 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ + LVL++ A +E++ Sbjct: 235 PVYGLNVYSMLKHNTLVLTEQAARLIEEKL 264 >gi|123444097|ref|YP_001008067.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163258|ref|YP_004299835.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166199925|sp|A1JS46|RL4_YERE8 RecName: Full=50S ribosomal protein L4 gi|122091058|emb|CAL13941.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325667488|gb|ADZ44132.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861854|emb|CBX72025.1| 50S ribosomal protein L4 [Yersinia enterocolitica W22703] Length = 201 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELIVKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LII G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|294638051|ref|ZP_06716311.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC 23685] gi|291088843|gb|EFE21404.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC 23685] Length = 201 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVSFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALDDVLIVT-SEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|254294439|ref|YP_003060462.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814] gi|254042970|gb|ACT59765.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814] Length = 309 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V NLD + G + +++ +F ++ + IL R++R+Q +++ G K++ RSEV T Sbjct: 1 MKLDVINLDAKKAGSVELNDAVFGIEDVRPDILQRMVRYQLAKRQAGTHKTQTRSEVNKT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 ++ QKG G ARH S++ F GGG A GP H L KK R+LAL+HALS K Sbjct: 61 KTRFGRQKGGGGARHGSRNAPIFVGGGVAHGPKVRSHAHDLTKKFRALALKHALSAKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V++ E KTK L +F AL L NAL+I G LD NF AARNIPNI++LP G Sbjct: 121 SSLIVLEEAAVSEVKTKALRAQFEALGLKNALVIGGESLDDNFAKAARNIPNIDVLPFAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++R LVL+K A++A+ RF Sbjct: 181 LNVYDVMRRHTLVLTKEAVDAVHARF 206 >gi|149922210|ref|ZP_01910648.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1] gi|149816950|gb|EDM76435.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1] Length = 218 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L+V++L+G D I VS+++FA + ++ +L V+RWQ +KR G +K+K RSEV T Sbjct: 1 MAKLNVKDLEGNDVAEIEVSDEVFAAEVKEHLLWEVVRWQRAKKRAGTAKTKERSEVHGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 SKMY QKGTG ARH S+ V+ FRGGG+ GP P ++ KK R+ ALR ALS + Sbjct: 61 RSKMYRQKGTGNARHGSRRVNVFRGGGQVHGPRPRDYTFSVNKKARAGALRSALSLRASE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++VI + + KT+ L L+ +L++DG + + +ARN+P + +G Sbjct: 121 GNLVVIRDFEVPDAKTRNLAAALGKLNAPKSLLVDGGD-NMSLARSARNLPTAQHIVPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR KL++S+S++ ALE R Sbjct: 180 VNVYDILRFPKLLISESSLRALEARL 205 >gi|314924184|gb|EFS88015.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL001PA1] gi|314965094|gb|EFT09193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL082PA2] gi|315093674|gb|EFT65650.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL060PA1] gi|315103968|gb|EFT75944.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL050PA2] gi|327326711|gb|EGE68497.1| 50S ribosomal protein L4 [Propionibacterium acnes HL103PA1] Length = 301 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK + +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGVAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|54113207|gb|AAV29237.1| NT02FT0099 [synthetic construct] Length = 207 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNLKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|15603279|ref|NP_246353.1| 50S ribosomal protein L4 [Pasteurella multocida subsp. multocida str. Pm70] gi|46577290|sp|Q9CL33|RL4_PASMU RecName: Full=50S ribosomal protein L4 gi|12721789|gb|AAK03498.1| RpL4 [Pasteurella multocida subsp. multocida str. Pm70] Length = 200 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + L L + LII LD N LAARN+ +++ VQGI Sbjct: 116 RLIVVEKFEVEAPKTKVLVQKLKELALEDVLIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|156973052|ref|YP_001443959.1| 50S ribosomal protein L4 [Vibrio harveyi ATCC BAA-1116] gi|166199924|sp|A7MWI4|RL4_VIBHB RecName: Full=50S ribosomal protein L4 gi|156524646|gb|ABU69732.1| hypothetical protein VIBHAR_00731 [Vibrio harveyi ATCC BAA-1116] Length = 200 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKSQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199 >gi|257125037|ref|YP_003163151.1| 50S ribosomal protein L4 [Leptotrichia buccalis C-1013-b] gi|257048976|gb|ACV38160.1| ribosomal protein L4/L1e [Leptotrichia buccalis C-1013-b] Length = 214 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 7/213 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ LDG G I V+ D+F ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKISE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRN-----FQLAARNIPNI 173 +++V+D+ + KTK + +AL+ A L + D L+ RNI + Sbjct: 121 GNVIVLDDFALEIPKTKTFIDFAKALNFDGAKQLYVTNDDTDNIDRDYFLYLSTRNIEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + +++Y +++ K++L+K A+ +E+ Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEEVL 213 >gi|239995001|ref|ZP_04715525.1| 50S ribosomal protein L4 [Alteromonas macleodii ATCC 27126] gi|332139849|ref|YP_004425587.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|332139862|ref|YP_004425600.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|226730609|sp|B4S092|RL4_ALTMD RecName: Full=50S ribosomal protein L4 gi|327549871|gb|AEA96589.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] gi|327549884|gb|AEA96602.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep ecotype'] Length = 201 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ + VSE F + + ++ +V+ R G K R+EV G Sbjct: 1 MELTLKDAQ----SALEVSEATFGREFNEALVHQVVVAYGAGARQGTKAQKTRAEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG+AF P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIKSILSELIRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L++ +L++ LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLVVVEKFGVDAPKTKALISALNEYELNDVLIVT-PEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ LE+ Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEEAL 200 >gi|212708982|ref|ZP_03317110.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM 30120] gi|212688348|gb|EEB47876.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM 30120] Length = 201 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALQDVLIIT-AELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|219849886|ref|YP_002464319.1| 50S ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485] gi|219544145|gb|ACL25883.1| ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485] Length = 222 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ N GE G I VS+ IF ++P ++ + + Q+ R+G ++GR EV + Sbjct: 1 MQATLYNQAGEQVGSIEVSDYIFGIEPNVPVMHQYVVMQNANARLGTHNTRGRGEVKGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P ++P+K+R L +R ALS KF +N Sbjct: 61 RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRVSMPRKMRRLGVRSALSVKFAAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQ--LDRNFQLAARNIPNINLLP 177 I ID L + +TK V +A L L++ + + N + +A N+P + L Sbjct: 121 QIRFIDELTFPQPRTKDFVAFLQAHGLADKKTLVVIDSKSPANENLRRSANNLPKVKTLL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +NV D+L +++ K+A++ +E Sbjct: 181 AHYLNVRDLLVYDHIIMPKAAVQVVE 206 >gi|256825885|ref|YP_003149845.1| 50S ribosomal protein L4P [Kytococcus sedentarius DSM 20547] gi|256689278|gb|ACV07080.1| LSU ribosomal protein L4P [Kytococcus sedentarius DSM 20547] Length = 223 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF + ++ +V+ Q R G +K R+EV Sbjct: 1 MPTIDIISPAGKATGSVELPAEIFDVAANVPLIHQVVVAQLAAARQGTHSTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGIVHGPQPRDYAQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+ L +K + R L++ + D ++ RN+ N++ L Sbjct: 121 GRIHVLSAVLEGDAPSSKAVNALLRGQTERRNLLVVLERGDELSLMSLRNLQNVHALFAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD++ + + A++A Sbjct: 181 QLNTYDVMCADDVFFTAGALDAF 203 >gi|209693925|ref|YP_002261853.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238] gi|226730608|sp|B6EPS6|RL4_ALISL RecName: Full=50S ribosomal protein L4 gi|208007876|emb|CAQ78006.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238] Length = 200 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKG-----AAALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ + Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSLKVNKKMYRGALKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK LV + + L+L++ LI+ G ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVEDFSIEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ +A++ +E+ Sbjct: 175 DPVSLVAFNKVLMTAAAVKQVEEML 199 >gi|320540608|ref|ZP_08040258.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str. Tucson] gi|320029539|gb|EFW11568.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str. Tucson] Length = 201 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|197294630|ref|YP_001799171.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense] gi|226730703|sp|B1VAE7|RL4_PHYAS RecName: Full=50S ribosomal protein L4 gi|171853957|emb|CAM11920.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense] Length = 207 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V N G+ + ++F ++P Q L V+ Q R G +K R+ V+ Sbjct: 1 MPKYNVINQLGDLISTKDLKSNVFDIQPHQQALYDVINAQRAAMRQGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KV LAL+ ALS F Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVVFGPSPRNYSVKVNQKVSHLALKSALSSHFRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++++D+ K+K + L++++ +I +RN LA+RN+P + L Sbjct: 121 NQLILVDDFNLDTHKSKDFQKTLQKLNVTSKALIIVTNSNRNLTLASRNLPYVTLETAAH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C L+L+ A+ E+ K Sbjct: 181 ASVYQILNCKNLILTLDAVAYFEEVLK 207 >gi|109896799|ref|YP_660054.1| 50S ribosomal protein L4 [Pseudoalteromonas atlantica T6c] gi|122972346|sp|Q15YN8|RL4_PSEA6 RecName: Full=50S ribosomal protein L4 gi|109699080|gb|ABG39000.1| LSU ribosomal protein L4P [Pseudoalteromonas atlantica T6c] gi|332172250|gb|AEE21504.1| ribosomal protein L4/L1e [Glaciecola agarilytica 4H-3-7+YE-5] Length = 201 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + + ++ +V+ R G K RSEV G Sbjct: 1 MELVLKDAQ----SALEVSEATFGREFNEALVHQVVVAFGAGARQGSKAQKTRSEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 57 AKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIQSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L+++ L+LS+ LI+ ++D N LAARN+ +++ VQGI Sbjct: 117 RLIVVEKFSVEAPKTKELLSKLNGLELSDVLIVT-SEVDENLFLAARNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ALE+ Sbjct: 176 DPVSLIAFEKVLITADAVKALEEAL 200 >gi|289424792|ref|ZP_06426574.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes SK187] gi|289154755|gb|EFD03438.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes SK187] Length = 301 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ +LV + TK L +++ + D L+ RN+ +++L + Sbjct: 126 MFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|253690182|ref|YP_003019372.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491565|sp|C6DG73|RL4_PECCP RecName: Full=50S ribosomal protein L4 gi|251756760|gb|ACT14836.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 201 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ I Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|94498477|ref|ZP_01305033.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58] gi|94422020|gb|EAT07065.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58] Length = 207 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 85/205 (41%), Positives = 124/205 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ LD + G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVNVQTLDAQTAGELELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRKAPIFIGGGKAHGARARDFGHDLNKKVRALGLKMALSAKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ E KTK LV L+L+ AL IDG ++ +F A+ NI +NLLP G Sbjct: 121 SLIVLDSFDVAEGKTKTLVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205 >gi|32035714|ref|ZP_00135595.1| COG0088: Ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209225|ref|YP_001054450.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae L20] gi|165977197|ref|YP_001652790.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190151115|ref|YP_001969640.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250013|ref|ZP_07336215.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253187|ref|ZP_07339336.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246690|ref|ZP_07528760.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248832|ref|ZP_07530845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251059|ref|ZP_07532983.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253445|ref|ZP_07535316.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255675|ref|ZP_07537479.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257858|ref|ZP_07539615.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260127|ref|ZP_07541837.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262256|ref|ZP_07543905.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264465|ref|ZP_07546050.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322515634|ref|ZP_08068612.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976] gi|166234628|sp|A3N359|RL4_ACTP2 RecName: Full=50S ribosomal protein L4 gi|226730606|sp|B3GZ12|RL4_ACTP7 RecName: Full=50S ribosomal protein L4 gi|226730607|sp|B0BST2|RL4_ACTPJ RecName: Full=50S ribosomal protein L4 gi|126098017|gb|ABN74845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877298|gb|ABY70346.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916246|gb|ACE62498.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647869|gb|EFL78076.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651076|gb|EFL81230.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852390|gb|EFM84625.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854759|gb|EFM86949.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856889|gb|EFM89021.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859124|gb|EFM91166.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861352|gb|EFM93342.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863764|gb|EFM95690.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865773|gb|EFM97651.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868019|gb|EFM99846.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870162|gb|EFN01921.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322118285|gb|EFX90568.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976] Length = 200 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + L L++ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFEIEAPKTKVLVQKLKDLALNDALIIT-ANLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVITADAVKQIEEML 199 >gi|254421500|ref|ZP_05035218.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335] gi|196188989|gb|EDX83953.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335] Length = 210 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G +S+ + + + I+ R L Q R G + +K R+EV Sbjct: 1 MVDCVVKNWQGEEAGSVSLELKVASEENASHIVHRALVRQINNGRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYTTKMNRKERRLALRTAFQSRA-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 N++ V+ + ++ + KTK + ++ S +++ + + N L+ RN+PN+ ++ Sbjct: 119 NEMTVVKDFAAELTQPKTKEALAALTRWEIDASAKVLMVFSERNDNVYLSLRNVPNVRMI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YDIL LV+++SA+E +++ + Sbjct: 179 DATNLNIYDILHADSLVVTESALEKIQEVY 208 >gi|71065060|ref|YP_263787.1| 50S ribosomal protein L4 [Psychrobacter arcticus 273-4] gi|109893624|sp|Q4FUF5|RL4_PSYA2 RecName: Full=50S ribosomal protein L4 gi|71038045|gb|AAZ18353.1| LSU ribosomal protein L4P [Psychrobacter arcticus 273-4] Length = 200 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S+ F + + ++ +V+ R G K R+EV+ G K + QKGTGRAR Sbjct: 11 VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +RGGG+AF P + +K+ A++ L++ +++++ + KT Sbjct: 71 SIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILVEEISVSGPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L ALI+ ++D N LAARNIP++N+L ++ ++ K+++S Sbjct: 131 KELIAKLNELGAPRALIVT-KEVDENLYLAARNIPHVNVLDTSEVDPVSLIAFDKVIMSV 189 Query: 197 SAIEALEDRF 206 A + E+ Sbjct: 190 EAAKQFEEAL 199 >gi|184155990|ref|YP_001844330.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956] gi|227515488|ref|ZP_03945537.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931] gi|260662753|ref|ZP_05863647.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN] gi|226730678|sp|B2GDW8|RL4_LACF3 RecName: Full=50S ribosomal protein L4 gi|183227334|dbj|BAG27850.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956] gi|227086101|gb|EEI21413.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931] gi|260552834|gb|EEX25833.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN] Length = 207 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 111/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G + +++ +F+++ + + Q R G K RS V Sbjct: 1 MTSVALFKQDGSQNGTVELNDSVFSVEANESAEFDAILRQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S QFRGGG FGP P +ALP+KVR LA++ ALS K + Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPTPRSYNYALPRKVRQLAIKSALSQKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +V+D L KTK L +S +++ D+N QL+ARN+P ++ G Sbjct: 121 DKFVVVDGLNFDAPKTKEFAGVMNNLKVSERVLVVVTDEDKNAQLSARNLPKTTVVTPAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N+ +++ K+++++SA+ +E+ Sbjct: 181 VNILNVVDAQKIIITQSALSQVEEVL 206 >gi|228470744|ref|ZP_04055595.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3] gi|228307601|gb|EEK16597.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3] Length = 207 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N IMV+D L + KTK V+ +AL++ + Q++ L+ARNIP ++++ Q Sbjct: 121 NQIMVLDQLSFEAPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVSIIRAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L C K+V ++ A+ + + F Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|19551747|ref|NP_599749.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|62389402|ref|YP_224804.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|145294658|ref|YP_001137479.1| 50S ribosomal protein L4 [Corynebacterium glutamicum R] gi|46577275|sp|Q8NT08|RL4_CORGL RecName: Full=50S ribosomal protein L4 gi|166234660|sp|A4QBI0|RL4_CORGB RecName: Full=50S ribosomal protein L4 gi|21323272|dbj|BAB97900.1| Ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032] gi|41324736|emb|CAF19218.1| 50S RIBOSOMAL PROTEIN L4 [Corynebacterium glutamicum ATCC 13032] gi|140844578|dbj|BAF53577.1| hypothetical protein [Corynebacterium glutamicum R] Length = 218 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V+ DG G + + +IF + +L +V+ Q R G +K R EV G Sbjct: 5 KLDVQTADGNINGSVELPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARNAR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ LV + TK L ++++ + D N Q +A N+P +++L + Sbjct: 125 IHVVSELVPGQTPSTKSAKAFIERLTERKSVLLVVSREDINAQKSANNLPGVHILAADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L+ +V S A+ +R Sbjct: 185 NTYDVLKSDDVVFSVEALHTFINR 208 >gi|218440624|ref|YP_002378953.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7424] gi|226730648|sp|B7KHY8|RL4_CYAP7 RecName: Full=50S ribosomal protein L4 gi|218173352|gb|ACK72085.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7424] Length = 210 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V+N G++ G S+ + + IL R + R G + +K R+EV Sbjct: 1 MVNCVVKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL+ K Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALNSKA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 ++++++N + KTK L + + +++ ++ N L+ARNI N+ L+ Sbjct: 119 ENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 INVYDIL SKLV + A+ + + + Sbjct: 179 RADSINVYDILSASKLVATSDALAKILEVY 208 >gi|90581759|ref|ZP_01237543.1| 50S ribosomal protein L4 [Vibrio angustum S14] gi|330447036|ref|ZP_08310686.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|90437057|gb|EAS62264.1| 50S ribosomal protein L4 [Vibrio angustum S14] gi|328491227|dbj|GAA05183.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 200 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ G +L+ N LAARN+ +++ + I Sbjct: 116 RLIVVDNFALEAPKTKALVAKLKELELTDALIVTG-ELEENLFLAARNLYKVDVRDAKAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ +A++A+E+ Sbjct: 175 DPVSLIAFDKVVMTAAAVKAVEEML 199 >gi|51591269|emb|CAH22935.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953] Length = 197 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 1/192 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++VSE F + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 6 GALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 65 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +R GG F P + KK+ AL+ LS+ + +++++ + Sbjct: 66 AGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEAP 125 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI+ ++ K+V+ Sbjct: 126 KTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVVM 184 Query: 195 SKSAIEALEDRF 206 + A++ +E+ Sbjct: 185 TADAVKQVEEML 196 >gi|325267187|ref|ZP_08133854.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394] gi|324981350|gb|EGC16995.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394] Length = 206 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLINAQGQVSGSVAASDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L + KTK + + L L L + QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIESLSAATPKTKDFADQVKNLGLEQVLFVT-KQLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K+VL+K A+E LE+++ Sbjct: 180 ADPYSLLRYKKVVLTKEAVEQLEEQW 205 >gi|291619174|ref|YP_003521916.1| RplD [Pantoea ananatis LMG 20103] gi|291154204|gb|ADD78788.1| RplD [Pantoea ananatis LMG 20103] gi|327395505|dbj|BAK12927.1| 50S ribosomal protein L4 RplD [Pantoea ananatis AJ13355] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEQFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|307297393|ref|ZP_07577199.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2] gi|306916653|gb|EFN47035.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2] Length = 227 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N+ G+ G + +SE +F ++P + ++ R + Q +R G + +K RSEV Sbjct: 1 MAQADVVNIAGQKVGTVELSESVFNVEPNEDLMFRYVNMQLSGRRAGLASAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG GP P L KK++ +ALR ALS + Sbjct: 61 GRKPWAQKHTGRARVGSTRSPLWRHGGVIHGPKPKDWSMKLTKKMKKVALRSALSLRLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDR--NFQLAARNIPNINL 175 +++V+D+L KTK L L L L + Q D N +L+ +NI + + Sbjct: 121 GNLIVLDDLKFDRPKTKQLREVLNNLGLDKTQKTLFVLPWQKDEYQNVRLSGKNIYGVKV 180 Query: 176 LPV--------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 + G+NVYDI+ KLV++ + +E+ Sbjct: 181 IIADNPGNKAVNSKENIDGLNVYDIVNHEKLVITADLVRKIEEVL 225 >gi|284992873|ref|YP_003411427.1| 50S ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160] gi|284066118|gb|ADB77056.1| ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160] Length = 292 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ VR GE G +++ ++F ++ +V+ Q R G +K R +V+ G Sbjct: 17 QVDVRTPAGETSGSVTLPGELFDASANVSLMHQVVVAQLAAARQGTHATKTRGQVSGGGI 76 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ N Sbjct: 77 KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQKTPKKMKAAALRGALSDRARENR 136 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ V +TK + ++ + +++ + D ++ RN+P ++LL + Sbjct: 137 VHVVSTFVDGDAPRTKAALATLESITRAKRVLVVLDRDDVLNWVSLRNVPQVHLLEAGQL 196 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L ++V +++A+ Sbjct: 197 NTYDVLVADEVVFTEAALAEF 217 >gi|167626805|ref|YP_001677305.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189029504|sp|B0U0Y8|RL4_FRAP2 RecName: Full=50S ribosomal protein L4 gi|167596806|gb|ABZ86804.1| 50S ribosomal protein L4 [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 207 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G + GV+ V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ S+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK +L + + L + G + + N L++RN+ N+ + Sbjct: 121 RMTVVESLRLETPKTKEFKVIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +V +K AI+ +E++ Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206 >gi|152978142|ref|YP_001343771.1| 50S ribosomal protein L4 [Actinobacillus succinogenes 130Z] gi|171704188|sp|A6VLI9|RL4_ACTSZ RecName: Full=50S ribosomal protein L4 gi|150839865|gb|ABR73836.1| ribosomal protein L4/L1e [Actinobacillus succinogenes 130Z] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANNA----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L + + + L++ALII LD N LAARN+ +++ VQGI Sbjct: 117 RLVVVEKFEIDAPKTKVLAQKLKDMALNDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVVTVDAVKQIEEML 200 >gi|298243967|ref|ZP_06967774.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963] gi|297557021|gb|EFH90885.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V N+ GE + +SE +F + P +L +V+ Q +R G + +K RSEV+ Sbjct: 1 MPSTTVYNMAGEAVEQLELSEQVFGVTPNMAVLHQVVTAQLVNRRQGNASTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K Y QKGTGRAR S QFRGGG FGP P H +PKK+R LA+R LSDK + Sbjct: 61 NKKPYRQKGTGRARQGSTRAPQFRGGGTVFGPKPHPYHHDVPKKMRRLAIRSVLSDKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++++ L + +TK ++ + L +++ + D N L+ RNIP+ + V Sbjct: 121 QSLIIVNKLEMETPRTKDMLELLKKLPSSEGKKVLMMLPKRDENVVLSTRNIPSAKVQHV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 INV ++L+ +V++ + +E F Sbjct: 181 SSINVVELLKHDYIVMTPKTVRWIELVF 208 >gi|227832220|ref|YP_002833927.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] gi|262183925|ref|ZP_06043346.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] gi|254803728|sp|C3PKQ3|RL4_CORA7 RecName: Full=50S ribosomal protein L4 gi|227453236|gb|ACP31989.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975] Length = 220 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V+ DG+ G + + ++F + ++ +V+ Q R G K+K R EV G Sbjct: 5 KLDVQTADGKTNGTVELPAELFDTEASIALMHQVVNAQLAAARQGTHKTKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GPVP PK++ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKRMIKAALYGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV + TK L D N L++ G + D N + +A N+PN+ +L Sbjct: 125 IHVIEELVPGQTPSTKQAKAFIERLTDRKNVLLVIGRE-DINARRSANNLPNVQILDAGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 184 LNTYDVLYSDDVVFSVEALHTFVER 208 >gi|261346934|ref|ZP_05974578.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM 4541] gi|282564999|gb|EFB70534.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM 4541] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSAKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|260914679|ref|ZP_05921145.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325] gi|260631278|gb|EEX49463.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325] Length = 200 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK LV + + L L + LII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVDKFEVEAPKTKVLVQKLKELALEDVLIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|270264372|ref|ZP_06192638.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13] gi|270041508|gb|EFA14606.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13] Length = 201 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|50122950|ref|YP_052117.1| 50S ribosomal protein L4 [Pectobacterium atrosepticum SCRI1043] gi|81643768|sp|Q6CZX1|RL4_ERWCT RecName: Full=50S ribosomal protein L4 gi|49613476|emb|CAG76927.1| 50S ribosomal subunit protein L4 [Pectobacterium atrosepticum SCRI1043] Length = 201 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII G +LD N LAARN+ +++ I Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|254822786|ref|ZP_05227787.1| 50S ribosomal protein L4 [Mycobacterium intracellulare ATCC 13950] Length = 223 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ G Sbjct: 10 KIDVKTPAGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 69 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 70 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + +V+ + TK L +++ + D + RN+P +++L + Sbjct: 130 IHAVTEIVAGQTPSTKSARAFLGTLTERKQVLVVIGRSDEAGAKSVRNLPGVHILTPGQL 189 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S A+ A Sbjct: 190 NTYDVLRSDDVVFSVEALNA 209 >gi|46577159|sp|P61069|RL4_SPIKU RecName: Full=50S ribosomal protein L4 gi|34849394|gb|AAP58893.1| ribosomal protein L4 [Spiroplasma kunkelii CR2-3x] Length = 208 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + +G ISV++ I+ ++P Q + + Q R G K+K ++EV+ G Sbjct: 1 MKLQVLDANGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQASMRQGTHKTKTKTEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P + + KKVR LA++ A S K Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKKYLKHVNKKVRKLAIKSAFSLKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +IM+ID + TK +V L + L+I + D ++RNI +N++ Sbjct: 121 KNIMIIDQFGIDKPSTKAMVKVLNNLKVNGEKLLIITTEGDEVNFKSSRNIEKVNIITSA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 GIN+YD+L +KL++++ AI+A+E+ + Sbjct: 181 GINIYDLLNANKLLVTEQAIKAIEEVY 207 >gi|158317790|ref|YP_001510298.1| 50S ribosomal protein L4 [Frankia sp. EAN1pec] gi|158113195|gb|ABW15392.1| ribosomal protein L4/L1e [Frankia sp. EAN1pec] Length = 247 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V G D G + + +F + ++ +V+ Q R G +K R EV G Sbjct: 22 TVPVHAPAGGDAGSVELPGAVFDVPVNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGR 81 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N Sbjct: 82 KPYRQKGTGRARQGSLRAPQFTGGGIVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNR 141 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ +LV+ TK V +L + +++ + D L+ RN+ ++LL + Sbjct: 142 LHVVSSLVAGDTPSTKSAVAALTSLVDARRVLVVALRSDELTWLSLRNVAEVHLLDPGQL 201 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+L +V ++ A+ A Sbjct: 202 NTYDVLVSDDVVFTEGALAA 221 >gi|218885188|ref|YP_002434509.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226730654|sp|B8DN97|RL4_DESVM RecName: Full=50S ribosomal protein L4 gi|218756142|gb|ACL07041.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ ++F ++ + IL V+R R G +K R+ V+ Sbjct: 1 MAVVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KKVR LAL+ ALS + Sbjct: 61 GAKPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKVNKKVRQLALKMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++MV+ + E KTK AL L AL+I + D L+ARNIP I L+ Sbjct: 121 ENLMVVKGIELPEIKTKLFAKVAGALGLEKALVIT-AEADTTLALSARNIPGITLITADQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY+IL+ KLV+ + A+E+++ R K Sbjct: 180 LSVYEILKHPKLVMFEGAVESVQARLK 206 >gi|257054471|ref|YP_003132303.1| 50S ribosomal protein L4P [Saccharomonospora viridis DSM 43017] gi|256584343|gb|ACU95476.1| LSU ribosomal protein L4P [Saccharomonospora viridis DSM 43017] Length = 228 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + ++ GE +G + + +IF ++ ++ +V+ Q R G +K R EV G Sbjct: 3 ATVELKTPTGEAQGTVELPSEIFDVQANIPLMHQVVVAQMAAARQGTHDTKTRGEVRGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 63 RKPYRQKGTGRARQGSIRAPQFVGGGTVHGPTPRDYTQRTPKKMKAAALRGALSDRARAG 122 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +I LV+ ++ TK A+ + +++ + D +L+ARN+P ++LL Sbjct: 123 QVHIITELVTGEKPSTKAAKAALAAVTQAKRILVVLHRDDELGRLSARNLPYVHLLTPDQ 182 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A +A Sbjct: 183 LNTYDVLVNDDVVFTKAAFDAF 204 >gi|148652239|ref|YP_001279332.1| 50S ribosomal protein L4 [Psychrobacter sp. PRwf-1] gi|172048472|sp|A5WCJ1|RL4_PSYWF RecName: Full=50S ribosomal protein L4 gi|148571323|gb|ABQ93382.1| LSU ribosomal protein L4P [Psychrobacter sp. PRwf-1] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S+ F + + ++ +V+ R G K R+EV+ G K + QKGTGRAR Sbjct: 11 VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S + GGG+AF P + +K+ A++ L++ + ++++D++ KT Sbjct: 71 STRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQDRLILVDSITVSAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+++ L+ ALI+ ++D N LAARNIP++N+L ++ ++ K+++S Sbjct: 131 KELISKLAELNAPRALIVT-NEVDENLYLAARNIPHVNVLGTNEVDPVSLIAFDKVIMSV 189 Query: 197 SAIEALEDRF 206 A + E+ Sbjct: 190 DAAKQFEEAL 199 >gi|237743900|ref|ZP_04574381.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1] gi|256027489|ref|ZP_05441323.1| 50S ribosomal protein L4 [Fusobacterium sp. D11] gi|260495202|ref|ZP_05815330.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33] gi|289765451|ref|ZP_06524829.1| LSU ribosomal protein L1E [Fusobacterium sp. D11] gi|229432931|gb|EEO43143.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1] gi|260197259|gb|EEW94778.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33] gi|289717006|gb|EFD81018.1| LSU ribosomal protein L1E [Fusobacterium sp. D11] Length = 209 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL GE G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +I+V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208 >gi|148270423|ref|YP_001244883.1| 50S ribosomal protein L4 [Thermotoga petrophila RKU-1] gi|170289182|ref|YP_001739420.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2] gi|281412730|ref|YP_003346809.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10] gi|166199921|sp|A5IM84|RL4_THEP1 RecName: Full=50S ribosomal protein L4 gi|226731438|sp|B1LBN9|RL4_THESQ RecName: Full=50S ribosomal protein L4 gi|147735967|gb|ABQ47307.1| LSU ribosomal protein L4P [Thermotoga petrophila RKU-1] gi|170176685|gb|ACB09737.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2] gi|281373833|gb|ADA67395.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10] Length = 235 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG A GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDR---NFQLAARNIPNINLL 176 N + V+D+L + KTK+L + L LS +I D N +L+ +N+PN+ ++ Sbjct: 121 NKLFVLDDLKLERPKTKFLKEILQNLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVI 180 Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTQDMVSKIEEVL 225 >gi|306821619|ref|ZP_07455217.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550364|gb|EFM38357.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 208 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +++G+ + +SE +FA K + + ++ KR G +K R+EV Sbjct: 1 MPKIDVLDINGKVVEQMEISEALFAAKVNEHCVYEAVKNHLANKRQGTQCTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GGG F P P + + KK++ +AL+ L+DK + Sbjct: 61 GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYKINKKIKRIALKSVLTDKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V++ LV + KTK + L LS + + D + RNI +++ Sbjct: 121 NKLVVLNELVISDAKTKAFAQVMKNLQLSGVKTLFVTKENDPEVVRSGRNIKGVDITFAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YDI+ LV++K A+ ++ F Sbjct: 181 LINTYDIINHEVLVMTKDAVIKAQEVF 207 >gi|293393310|ref|ZP_06637624.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582] gi|291424220|gb|EFE97435.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|16272719|ref|NP_438937.1| 50S ribosomal protein L4 [Haemophilus influenzae Rd KW20] gi|68249374|ref|YP_248486.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP] gi|145630523|ref|ZP_01786303.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|145632131|ref|ZP_01787866.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655] gi|145634811|ref|ZP_01790519.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA] gi|145636666|ref|ZP_01792333.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] gi|145638422|ref|ZP_01794032.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII] gi|148826577|ref|YP_001291330.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE] gi|148827967|ref|YP_001292720.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG] gi|229844645|ref|ZP_04464784.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1] gi|229845828|ref|ZP_04465940.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1] gi|260579869|ref|ZP_05847699.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW] gi|260581596|ref|ZP_05849393.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127] gi|319775288|ref|YP_004137776.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047] gi|319897728|ref|YP_004135925.1| 50S ribosomal subunit protein l4 [Haemophilus influenzae F3031] gi|329122784|ref|ZP_08251356.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116] gi|1173051|sp|P44345|RL4_HAEIN RecName: Full=50S ribosomal protein L4 gi|81336199|sp|Q4QMC1|RL4_HAEI8 RecName: Full=50S ribosomal protein L4 gi|166234672|sp|A5UDU6|RL4_HAEIE RecName: Full=50S ribosomal protein L4 gi|166234673|sp|A5UHT1|RL4_HAEIG RecName: Full=50S ribosomal protein L4 gi|1573788|gb|AAC22437.1| ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd KW20] gi|68057573|gb|AAX87826.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP] gi|144983913|gb|EDJ91355.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|144987038|gb|EDJ93568.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655] gi|145267977|gb|EDK07973.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA] gi|145270192|gb|EDK10128.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH] gi|145272751|gb|EDK12658.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII] gi|148716737|gb|ABQ98947.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE] gi|148719209|gb|ABR00337.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG] gi|229810832|gb|EEP46549.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1] gi|229812359|gb|EEP48049.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1] gi|260093153|gb|EEW77086.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW] gi|260095189|gb|EEW79080.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127] gi|301169495|emb|CBW29096.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae 10810] gi|309751561|gb|ADO81545.1| 50S ribosomal protein L4 [Haemophilus influenzae R2866] gi|317433234|emb|CBY81609.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3031] gi|317449879|emb|CBY86090.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047] gi|327472048|gb|EGF17486.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L + +ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199 >gi|88801218|ref|ZP_01116759.1| 50S ribosomal protein L4 [Reinekea sp. MED297] gi|88776056|gb|EAR07290.1| 50S ribosomal protein L4 [Reinekea sp. MED297] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V N + + ++E F + + ++ +V+ R G +K RS VA G Sbjct: 1 MDIQVANAKSK----VELNEATFGNEFNEALVHQVVTAYMAGARQGTRATKNRSAVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + + GGG +F P + KK+ A++ LS+ Sbjct: 57 AKPWRQKGTGRARAGTIRSPIWVGGGHSFARAPQDWSQKVNKKMYRGAMKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++L + KTK + + + +D+SNAL++ +D+N L+ARN+P++ + V G+ Sbjct: 117 RLVVVEDLKFDKPKTKDFLAKMKEIDVSNALVV-ADDVDQNLYLSARNVPHVEVSDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N +++ K+V++ +AI L++ F Sbjct: 176 NPVNLVAYDKVVVTVAAINKLQEVF 200 >gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis] gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis] Length = 299 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 3/203 (1%) Query: 5 SVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 V + D + G+I +++ +F P+ IL RV+ WQ ++R G + K RSEV G K Sbjct: 87 WVTSFKDDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRK 146 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG +AR S FRGGG GP P + LPKKVR + LR ALS + D+ Sbjct: 147 PWPQKGLNKARQGSIRAPHFRGGGVVHGPKPRSYEYTLPKKVRRMGLRVALSVRLAQGDL 206 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 ++++ E + L+ +A+++DG +R F+ AA + +++ + +NV Sbjct: 207 HIVESFDDIE-DDQDLMPILDQRGWQSAVLVDGSPNERLFEAAAD-LDKVDVFYSENVNV 264 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 Y IL L+LS A++ LE+R Sbjct: 265 YSILLRHNLILSLDAVKQLEERL 287 >gi|152964658|ref|YP_001360442.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216] gi|151359175|gb|ABS02178.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216] Length = 234 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 I + +R DG G + + F + ++ +V+ Q R G +K R EV G Sbjct: 11 ITVPLRTADGGSNGTVELPAKDFGRQANISLIHQVVTAQLAAARQGTHSTKRRGEVRGGG 70 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 71 KKPYKQKGTGRARQGSLRAPQFTGGGIVHGPKPRDYSQRTPKKMKAAALRGALSDRVRHE 130 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L + + TK L +++ + D Q + RN+ N+++LP Sbjct: 131 RLHVVEGLAAGETPSTKTARALIATLSGRKNVLVVLTRDDDVSQKSLRNLDNVHVLPADQ 190 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+++ +V +++A++A Sbjct: 191 LNTYDVVKSDDVVFTRAALDAF 212 >gi|317494341|ref|ZP_07952755.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917591|gb|EFV38936.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ G ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|156743947|ref|YP_001434076.1| 50S ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941] gi|156235275|gb|ABU60058.1| ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941] Length = 221 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 111/199 (55%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N GE+ GVI +S+ +F ++P ++ + + Q R+G + GR EV + Sbjct: 1 MEAKLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P +P+K+R LA+R ALS + Sbjct: 61 RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRSYTKDMPRKMRRLAVRSALSARHRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+ +D L ++ +TK ++ AL+L+ +I + D + + +A N+PN+ L + Sbjct: 121 AILFLDRLTFEQPRTKDMIAVLNALNLTGKTLIVLDRKDEHVRRSANNLPNVKTLLAHYL 180 Query: 182 NVYDILRCSKLVLSKSAIE 200 NV D+L +V+ K+A++ Sbjct: 181 NVIDLLTHDHVVMLKAAVD 199 >gi|39938687|ref|NP_950453.1| 50S ribosomal protein L4 [Onion yellows phytoplasma OY-M] gi|46577157|sp|P61067|RL4_ONYPE RecName: Full=50S ribosomal protein L4 gi|39721796|dbj|BAD04286.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M] Length = 207 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 112/207 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G+ ++ +F +KP Q +L V+ Q R G +K R+ VA Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KVRSLAL+ ALS + + Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+DN+ KTK + L++++ +I Q+ LA+RN+ I L Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C +LVL+ +A+ E+ K Sbjct: 181 ASVYQILNCKQLVLTAAAVNYFEEVLK 207 >gi|149020530|gb|EDL78335.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_a [Rattus norvegicus] Length = 302 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 14/215 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQ--------QGILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRWSLTMKYKLDILHQVAVWQRNFKRISYAKTKTRAE 127 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115 V+ G K + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ Sbjct: 128 VSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALT 187 Query: 116 DKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIP 171 K +D+ ++D+L +YL + ++R S+ L++D ++ +N A + Sbjct: 188 VKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVMAATSRLN 246 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 SFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281 >gi|261823231|ref|YP_003261337.1| 50S ribosomal protein L4 [Pectobacterium wasabiae WPP163] gi|261607244|gb|ACX89730.1| ribosomal protein L4/L1e [Pectobacterium wasabiae WPP163] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ I Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|326773964|ref|ZP_08233246.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505] gi|326636103|gb|EGE37007.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505] Length = 214 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 2/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + + ++F ++ +V+ Q R G +K R +V G Sbjct: 6 TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 66 KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGR 125 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI V+ TK + R L AL+I Q D +L+ RN P ++L + Sbjct: 126 VHVITEFVTTTVPSTKNALVALRNLTDRKALVIVDRQ-DDLSRLSLRNAPEAHVLWADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L+ +V + S ++A Sbjct: 185 NTYDVLKSDDVVFTASGLDAF 205 >gi|319944794|ref|ZP_08019058.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599] gi|319742043|gb|EFV94466.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ N G+ G +SV + +F + ++ +++ R G K R+EV ++ Sbjct: 1 MELNILNDQGQKAGAVSVVDTVFGTDFNEPLIHQIVVAYQANARSGNRAQKDRTEVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + +K+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNKPDENFSQKVNRKMYRAGMRSILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+++L + KTK LV + + L + LI+ + D N LAARN+P++ +L + Sbjct: 121 DRLSVVESLKLEAPKTKLLVGKLNGMGLKSTLIVVDNE-DENLYLAARNLPHVLVLETRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ ++++K A+ +++ Sbjct: 180 IDPLSLVHYDNVLVTKQALAQIQEML 205 >gi|194246734|ref|YP_002004373.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali] gi|254803748|sp|B3QZZ2|RL4_PHYMT RecName: Full=50S ribosomal protein L4 gi|193807091|emb|CAP18529.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali] Length = 207 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 109/207 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ N G+ I + ++IF + + +L V+ Q R G +K R+ V+ Sbjct: 1 MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH + +RGGG AFGP P + +KVR LAL+ ALS K + Sbjct: 61 GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++IDN+ + KTK L++ +I L+ N L+ RN+ + L V Sbjct: 121 KNLILIDNINLETHKTKEFQNILDQLNIQQKTLILTKDLNHNLCLSIRNLSKVLLETVSH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++VY +L S ++L+K A E+ K Sbjct: 181 VSVYQLLSYSTIILTKEAANYFEENLK 207 >gi|19704965|ref|NP_602460.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329219|ref|ZP_06871720.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|46577280|sp|Q8RIF6|RL4_FUSNN RecName: Full=50S ribosomal protein L4 gi|19712867|gb|AAL93759.1| LSU ribosomal protein L1E [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153575|gb|EFG94392.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL GE G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEEVL 208 >gi|41410260|ref|NP_963096.1| 50S ribosomal protein L4 [Mycobacterium avium subsp. paratuberculosis K-10] gi|46577156|sp|P61066|RL4_MYCPA RecName: Full=50S ribosomal protein L4 gi|41399094|gb|AAS06712.1| RplD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 217 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 2/203 (0%) Query: 1 MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +L V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ Sbjct: 1 MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ Sbjct: 61 GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I I LVS + TK AL +++ + D + RN+P +++L Sbjct: 121 NGRIHAITELVSGQTPSTKSAKAFLGALTERKQVLVVIGRSDEAGAKSVRNLPGVHILAP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 181 DQLNTYDVLRADDVVFSVEALRA 203 >gi|294101629|ref|YP_003553487.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261] gi|293616609|gb|ADE56763.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261] Length = 207 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + GE + +S+ +FA + +V+ Q R G KGR EV Sbjct: 1 MPTVKLVSFQGEQVSDLQLSDSVFAAPIHVPAMHQVVVAQLANLRQGTHSCKGRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S + GGG A GP P + KKVR LALR ALS K Sbjct: 61 GRKPWRQKHTGRARHGSTRSPIWVGGGVAHGPSPRDYSQKVNKKVRRLALRSALSLKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D++ TK ++ + + LI+ + + + RNIP+ + V Sbjct: 121 NLLTVVDHIDLDTPSTKEMLGFIDKMGVKKPLIVLH-EPNDAVSKSVRNIPDARAINVGN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVYD+L L+L++ A+ +E+ + Sbjct: 180 INVYDLLNYQNLILTQEAVARIEEVY 205 >gi|292489848|ref|YP_003532738.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430] gi|292900890|ref|YP_003540259.1| 50S ribosomal protein L4 [Erwinia amylovora ATCC 49946] gi|291200738|emb|CBJ47871.1| 50S ribosomal subunit protein L4 [Erwinia amylovora ATCC 49946] gi|291555285|emb|CBA23587.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430] gi|312174030|emb|CBX82283.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora ATCC BAA-2158] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII G +L N LAARN+ +++ GI Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKDMALEDVLIITG-ELQENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|157372775|ref|YP_001480764.1| 50S ribosomal protein L4 [Serratia proteamaculans 568] gi|166990953|sp|A8GKJ6|RL4_SERP5 RecName: Full=50S ribosomal protein L4 gi|157324539|gb|ABV43636.1| ribosomal protein L4/L1e [Serratia proteamaculans 568] Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK L + + + L + LI+ G +LD N LAARN+ +++ V GI Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|284006162|emb|CBA71404.1| 50S ribosomal protein L4 [Arsenophonus nasoniae] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++VSE F + ++ +V+ + R G K R+EV+ +G K + QKGTGRAR Sbjct: 10 LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARAG 69 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +R GG F P + KK+ AL+ LS+ + ++V++ + KT Sbjct: 70 SVKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFALEAPKT 129 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + + L + LI+ ++D N LAARN+ +++ GI+ ++ K+V++ Sbjct: 130 KLLVQKLKEMALDDVLIVT-NEVDENLFLAARNLYKVDVRDAIGIDPVSLIAFDKVVMTA 188 Query: 197 SAIEALEDRF 206 A++ +E+ Sbjct: 189 DAVKQIEEML 198 >gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens] Length = 269 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N EDKG+ +++ D+F + + ++ RV+RWQ ++R G + +KG EV+ TG Sbjct: 57 VEVKVTNFQSEDKGLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHEVSGTG 116 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+GRARH S QFRGG GP P L K+VR L L+ ALS + Sbjct: 117 RKPGPQKGSGRARHGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRRLGLKVALSSRVAEG 176 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQ 179 + V D++ KT+ + + LI+D + ++ + A N+ +N+LP + Sbjct: 177 KLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCRATGNLHYVNVLPAK 236 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY IL+ LV+S AI +E+R Sbjct: 237 GLNVYSILQHDTLVMSVGAIRRIEERL 263 >gi|325577128|ref|ZP_08147612.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392] gi|301155331|emb|CBW14797.1| 50S ribosomal subunit protein L4 [Haemophilus parainfluenzae T3T1] gi|325160710|gb|EGC72831.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L + +ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199 >gi|237736171|ref|ZP_04566652.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817] gi|229421724|gb|EEO36771.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817] Length = 210 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176 D++V+D + KTK +V A++ +N + L D N L+ RN+ N +L Sbjct: 121 GDVLVLDG-TIETPKTKTIVALTNAINATNKQLFVVNDLAEMNDYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++++K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVIITKEALTTIEEVL 209 >gi|282855207|ref|ZP_06264539.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J139] gi|282581795|gb|EFB87180.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes J139] gi|314982252|gb|EFT26345.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA3] gi|315090439|gb|EFT62415.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes HL110PA4] Length = 301 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V ++ G+ G + D+F + ++ +V+ Q R G +K R +V+ G Sbjct: 6 TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q+ GGG GP P PKK+ + ALR ALSD N Sbjct: 66 KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ +LV + TK + +++ + D L+ RN+ +++L + Sbjct: 126 IFVVTSLVDGDKPSTKQAKVVLSGVAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V S++ ++A Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206 >gi|269122980|ref|YP_003305557.1| 50S ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112] gi|268314306|gb|ACZ00680.1| ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112] Length = 214 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 5/209 (2%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V NL+GE+KGV +VS +IF L+P + ++ VL + R G + +K R EV+ G Sbjct: 5 NLKVYNLNGEEKGVTTVSSEIFGLEPNKYVMHEVLTAELAASRAGTASTKTRGEVSGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S GGG GP P + KKVR LAL+ AL+ + + D Sbjct: 65 KPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYDKKVNKKVRKLALKSALAVRIQNGD 124 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL--SNALIID---GCQLDRNFQLAARNIPNINLLP 177 ++V+++ + KTK V +++ L I D N L+ RNI +L Sbjct: 125 VIVLEDYMLDTPKTKAFVNFTEKVNMVEDKKLFIVNDYLEDADWNLYLSVRNIEKTEILD 184 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++VY +L+ +K+V++K A+ +E+ Sbjct: 185 PRELSVYALLKFNKVVITKEALATIEEVL 213 >gi|152998270|ref|YP_001343105.1| 50S ribosomal protein L4 [Marinomonas sp. MWYL1] gi|189029508|sp|A6W391|RL4_MARMS RecName: Full=50S ribosomal protein L4 gi|150839194|gb|ABR73170.1| ribosomal protein L4/L1e [Marinomonas sp. MWYL1] Length = 201 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 2/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G + G + VS+ FA + + ++ +V+ R G K RSEVA G K + Sbjct: 3 LNLTGAE-GTVEVSDVAFAREYNEALVHQVVTSYLAGARQGSRAQKTRSEVAGGGRKPWK 61 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKG+GRAR + +R GG F P + KK+ A+R S+ + ++V+ Sbjct: 62 QKGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVV 121 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++L + KTK + + L++ NALI+ LD N LAARNIPN+++ I+ + Sbjct: 122 EDLKLEAPKTKLFIAKMAELNIENALIV-SHDLDDNLFLAARNIPNVDVRDAASIDPVSL 180 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ A++ +E+ Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200 >gi|89095537|ref|ZP_01168442.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92] gi|89080212|gb|EAR59479.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92] Length = 201 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 105/200 (52%), Gaps = 2/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G G + VS+ F + + ++ +V+ R G K RS V+ G+K + Sbjct: 3 LNLAGAK-GSVEVSDLAFGKEFNETLVHQVVTAYLAGGRQGTKAQKNRSAVSGGGAKPWR 61 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +R GG F P + KK+ A+R S+ ++V+ Sbjct: 62 QKGTGRARAGTSRSPIWRAGGVTFAAQPRDHSQKVNKKMFRAAMRCIFSELVRQERLVVV 121 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + + KTK V + L+L+NAL+I ++++N LAARN+P++++ G++ + Sbjct: 122 EEFAVESPKTKQFVAKLNELELNNALLIT-EEVEQNLYLAARNVPHVDVRDASGVDPVSL 180 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ +A++ +E++ Sbjct: 181 VGFDKVLVTVAALKKIEEKL 200 >gi|75906915|ref|YP_321211.1| 50S ribosomal protein L4 [Anabaena variabilis ATCC 29413] gi|109893575|sp|Q3MFC0|RL4_ANAVT RecName: Full=50S ribosomal protein L4 gi|75700640|gb|ABA20316.1| LSU ribosomal protein L4P [Anabaena variabilis ATCC 29413] Length = 210 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTALVSRI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+++++ KTK LV F + +++ + N L+ARNI N+ L+ Sbjct: 119 DDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ SA+E +++ + Sbjct: 179 AADQLNVYDLLHADKIVVTTSALEKIQEVY 208 >gi|304438906|ref|ZP_07398829.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372572|gb|EFM26155.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 229 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 22/229 (9%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK----------------------PQQGILARVLR 38 M ++ V ++ G + I + E+IF LK + + V++ Sbjct: 1 MTKVKVFDMTGAEVSEIELDENIFGLKEELTEEEIEKLVEEGNFDTENRINRHAVYLVVK 60 Query: 39 WQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV 98 Q KR G K R+EV G K + QKGTGRAR S Q+R GG F P Sbjct: 61 NQLANKRQGTHACKTRAEVRGGGRKPWRQKGTGRARQGSIRSPQWRKGGIVFAKKPRDYS 120 Query: 99 HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158 + PKKVR LAL+ L+ K N+I+VID++ KTK A+ + + + + Sbjct: 121 YTTPKKVRRLALKSVLTSKVNLNEIIVIDDIKMDNIKTKDFKNFLNAVGVKKSAYVVTAE 180 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 DRN L+ARNI + + INVYD+L+ LV+SK+A+ + + FK Sbjct: 181 HDRNVNLSARNIAGVKASEARLINVYDLLKHENLVISKAALGTVSEVFK 229 >gi|268593542|ref|ZP_06127763.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM 1131] gi|291310820|gb|EFE51273.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM 1131] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG +F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-AELDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|187932142|ref|YP_001892127.1| 50S ribosomal protein L4 [Francisella tularensis subsp. mediasiatica FSC147] gi|226730667|sp|B2SDY4|RL4_FRATM RecName: Full=50S ribosomal protein L4 gi|187713051|gb|ACD31348.1| 50S ribosomal protein L4 [Francisella tularensis subsp. mediasiatica FSC147] Length = 207 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++++L G++ G + V+E +FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + FR GG F P + +K+ S A++ LS+ Sbjct: 61 AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRLG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 + +++ L + KT+ + +L + + L + G + N L++RN+ N+ + Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN ++ +VL+K AI+ +E++ Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206 >gi|71278848|ref|YP_267621.1| 50S ribosomal protein L4 [Colwellia psychrerythraea 34H] gi|109893587|sp|Q487Z4|RL4_COLP3 RecName: Full=50S ribosomal protein L4 gi|71144588|gb|AAZ25061.1| ribosomal protein L4 [Colwellia psychrerythraea 34H] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+++ G + VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELSLKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + +K+ A+ LS+ Sbjct: 57 AKPWRQKGTGRARAGTTRGPIWRTGGVTFAAKPQDHSQKVNRKMYRGAIASILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++N + KTK LV + + L+L + LI+ ++D N L+ARN+ +++ V I Sbjct: 117 RLVVVENFSVETPKTKELVAKLKGLELKDVLIVT-KEVDENLFLSARNLYKVDVRDVAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E Sbjct: 176 DPVSLVGFEKVLITADAVKEIEGIL 200 >gi|300718704|ref|YP_003743507.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661] gi|299064540|emb|CAX61660.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII G +L+ N LAARN+ +++ GI Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|332176632|gb|AEE12322.1| ribosomal protein L4/L1e [Porphyromonas asaccharolytica DSM 20707] Length = 207 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N IMV+D L + KTK V+ +AL++ + Q++ L+ARNIP ++++ Q Sbjct: 121 NQIMVLDQLSFEAPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVSIVRAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L C K+V ++ A+ + + F Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|237510710|gb|ACQ99342.1| ribosomal protein L4 [Turicella otitidis] Length = 217 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG G + + +IF + + +V+ Q R G +K R EV G Sbjct: 5 KLDVHTADGNTNGQVELPSEIFEREASIELTHQVVVAQLAAARQGTHSTKTRGEVRGGGK 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK++ AL ALS++ ++ Sbjct: 65 KPYRQKGTGRARQGSIRAPQFTGGGIVHGPKPRDYSQRTPKKMKRAALHGALSNRAANDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V++ LV + TK + L N L++ + D N + +A N+P++++L Sbjct: 125 IHVVEELVPGTKPSTKAARSFLERLTGRKNVLLVVQAE-DLNARRSANNLPDVHILVPSQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+++ +V SK+A+EA DR Sbjct: 184 LNTYDVIKSDDVVFSKAALEAFIDR 208 >gi|25027079|ref|NP_737133.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|259506792|ref|ZP_05749692.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|46577270|sp|Q8FS79|RL4_COREF RecName: Full=50S ribosomal protein L4 gi|23492359|dbj|BAC17333.1| putative 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] gi|259165663|gb|EEW50217.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314] Length = 218 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ +G G + + +IF + +L +V+ Q R G +K R+EV G Sbjct: 5 TLDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYAQRTPKKMIKAALYGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LV + TK L ++++ + D N Q +A N+P +++L + Sbjct: 125 IHVISELVPGQAPSTKSAKAFIERLTERKSVLLVIGREDINAQKSANNLPGVHILAADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V S A+ +R Sbjct: 185 NTYDVLNSDDIVFSVEALHTFINR 208 >gi|238921441|ref|YP_002934956.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146] gi|269140569|ref|YP_003297270.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202] gi|259491556|sp|C5BGM4|RL4_EDWI9 RecName: Full=50S ribosomal protein L4 gi|238871010|gb|ACR70721.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146] gi|267986230|gb|ACY86059.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202] gi|304560358|gb|ADM43022.1| LSU ribosomal protein L4p (L1e) [Edwardsiella tarda FL6-60] Length = 201 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALDDVLIVT-SEVDENLFLAARNLFKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|300857763|ref|YP_003782746.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41] gi|300685217|gb|ADK28139.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41] gi|302205501|gb|ADL09843.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis C231] gi|302330056|gb|ADL20250.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis 1002] gi|308275737|gb|ADO25636.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis I19] Length = 217 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G+ G + + +IF + ++ +V+ Q KR G +K R+EV+ G Sbjct: 5 KLDVLTAEGKTDGQVELPAEIFDREASVALMHQVVNAQLAAKRQGTHSTKTRAEVSGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARHER 124 Query: 123 IMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI LV + + F R D N L++ G + D Q +ARN+P +++L Sbjct: 125 IHVITELVPGQTPSTKSARAFVERITDRRNVLLVVGRE-DTTAQKSARNLPGVHILFADQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L+ +V S A+ +R Sbjct: 184 LNTYDVLKSDDVVFSVEALNTFINR 208 >gi|261493008|ref|ZP_05989550.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495172|ref|ZP_05991635.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309148|gb|EEY10388.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311352|gb|EEY12513.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 200 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L + + + L++ALII +D N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFEIDAPKTKVLAQKLKDMALNDALIIT-ANVDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|213965010|ref|ZP_03393209.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum SK46] gi|213952546|gb|EEB63929.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum SK46] Length = 215 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G G + + +F + ++ +V+ Q R G K K R EV G Sbjct: 5 KLDVHTAEGGVNGSVELPASVFDAEVSIALMHQVVVAQRAAARQGTHKVKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GPVP PKK+ + ALR ALSD+ + Sbjct: 65 KPWRQKGTGRARQGSIRAPHWTGGGIVHGPVPRDYSQRTPKKMIAAALRGALSDRARHDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V++ LV + TK T L + +++ + D N + RN+P +++L + Sbjct: 125 IHVVEELVPGQTPSTKAARTFVERLTERHNVLVVLPREDVNSWKSVRNLPGVHILSEDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L+ ++ + A+ R Sbjct: 185 NTYDVLKADDVIFAVQALNDFITR 208 >gi|284929562|ref|YP_003422084.1| 50S ribosomal protein L4P [cyanobacterium UCYN-A] gi|284810006|gb|ADB95703.1| LSU ribosomal protein L4P [cyanobacterium UCYN-A] Length = 210 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE G ++++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGELVGQVTLNLKVAKEESSAHLLHRAVVRHLANARQGNACSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A+S + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAISSRI-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++++ + + + KTK+ + + + + D N L+ RN+ + +L Sbjct: 119 EDLIIVKDFIEQFPDPKTKHFTAALTRWGVESRKKVALILLETDNNIYLSVRNLSYVKIL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+L K+V++ A+ +++ + Sbjct: 179 RADSLNIYDLLNADKIVMTSEALVKIQEVY 208 >gi|329945685|ref|ZP_08293415.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str. F0386] gi|328528493|gb|EGF55467.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str. F0386] Length = 214 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 2/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + + ++F ++ +V+ Q R G +K R +V G Sbjct: 6 TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 66 KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGR 125 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI V+ TK + R L AL+I Q D +L+ RN P ++L + Sbjct: 126 VHVITEFVTTTVPSTKNALVALRNLTDRKALVIVDRQ-DDLSRLSLRNAPEAHVLWADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L+ +V + S ++A Sbjct: 185 NTYDVLKSDDVVFTASGLDAF 205 >gi|296113796|ref|YP_003627734.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4] gi|295921490|gb|ADG61841.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4] gi|326562141|gb|EGE12469.1| 50S ribosomal protein L4 [Moraxella catarrhalis 7169] gi|326564494|gb|EGE14720.1| 50S ribosomal protein L4 [Moraxella catarrhalis 46P47B1] gi|326565677|gb|EGE15840.1| 50S ribosomal protein L4 [Moraxella catarrhalis 12P80B1] gi|326566246|gb|EGE16398.1| 50S ribosomal protein L4 [Moraxella catarrhalis 103P14B1] gi|326567102|gb|EGE17224.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC1] gi|326568366|gb|EGE18446.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC7] gi|326572267|gb|EGE22262.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC8] gi|326574609|gb|EGE24549.1| 50S ribosomal protein L4 [Moraxella catarrhalis O35E] gi|326574865|gb|EGE24795.1| 50S ribosomal protein L4 [Moraxella catarrhalis 101P30B1] gi|326576189|gb|EGE26104.1| 50S ribosomal protein L4 [Moraxella catarrhalis CO72] Length = 200 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +SE F + + ++ +V+ R G K R EV+ G K + QKGTGRAR Sbjct: 11 VELSEITFGREFNEALVHQVVTAYLAGARQGTRAQKTRGEVSGGGKKPWRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S + GGG+AF P + +K+ A++ L++ ++++D++ KT Sbjct: 71 SIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQERLVLVDDIAVSAPKT 130 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K L+ + L+ ALI+ ++D N LAARNIP +N+L + ++ ++ K++++ Sbjct: 131 KELIAKLAELNAPRALIVTH-EVDENLYLAARNIPYVNVLGTREVDPVSLVSFDKVIMTV 189 Query: 197 SAIEALEDRF 206 A + E+ Sbjct: 190 EAAKQFEETL 199 >gi|313887073|ref|ZP_07820772.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica PR426713P-I] gi|312923484|gb|EFR34294.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica PR426713P-I] Length = 207 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ GED G I++ +F ++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKAKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR + + RGG + FGP P L KK+R LA R AL+ K Sbjct: 61 TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N IMV+D L + KTK V+ +AL++ + Q++ L+ARNIP +N++ Q Sbjct: 121 NQIMVLDQLSFETPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVNIVRAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L C K+V ++ A+ + + F Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207 >gi|312899044|ref|ZP_07758428.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis F0359] gi|310619829|gb|EFQ03405.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis F0359] Length = 207 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++S N+ G G + +++ +F ++ + ++ + + Q +R+G +K R V Sbjct: 1 MPKVSTYNIAGAQTGEMELNDSVFGVEVNEAVMRQAVLRQLANERLGTHATKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P +P+K R LA++ ALSDK + Sbjct: 61 GRKPWKQKGTGRARVGSTRSPLWVGGGTVFGPQPRSYEQKMPRKARRLAVKSALSDKVNT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N++ V+D +V KTK +V S ++ D ARN+ + + + Sbjct: 121 NELFVLDEIVLAAPKTKEVVKVVDNFKFSGEKVLFITDGDEVMARCARNLQGVKSVSTEN 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L +KL ++KSA+ +E+ Sbjct: 181 MNIFDLLHYTKLFITKSAVAKIEEVL 206 >gi|118466008|ref|YP_883605.1| 50S ribosomal protein L4 [Mycobacterium avium 104] gi|254776906|ref|ZP_05218422.1| 50S ribosomal protein L4 [Mycobacterium avium subsp. avium ATCC 25291] gi|166234686|sp|A0QL17|RL4_MYCA1 RecName: Full=50S ribosomal protein L4 gi|118167295|gb|ABK68192.1| ribosomal protein L4/L1 family protein [Mycobacterium avium 104] Length = 217 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 2/203 (0%) Query: 1 MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +L V+ G+ +G I + ++F ++ +V+ Q R G +K R +V+ Sbjct: 1 MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ Sbjct: 61 GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I I LVS + TK L +++ + D + RN+P +++L Sbjct: 121 NGRIHAITELVSGQTPSTKSAKAFLGTLTERKQVLVVIGRSDEAGAKSVRNLPGVHILAP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+LR +V S A+ A Sbjct: 181 DQLNTYDVLRADDVVFSVEALRA 203 >gi|326793559|ref|YP_004311379.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1] gi|326544323|gb|ADZ89543.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1] Length = 201 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 2/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G + G + VS+ FA + + ++ +V+ R G K RSEVA G K + Sbjct: 3 LNLTGAE-GTVEVSDVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVAGGGRKPWK 61 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKG+GRAR + +R GG F P + KK+ ALR S+ + ++V+ Sbjct: 62 QKGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAALRTIWSELARKDRLVVV 121 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + L KTK + L++ NAL++ LD N LAARNIPN+ + I+ + Sbjct: 122 EELKIDAPKTKLFKAKMAELNVENALVV-SHDLDDNLFLAARNIPNVGVCDAASIDPVSL 180 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ A++ +E+ Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200 >gi|85858147|ref|YP_460349.1| 50S ribosomal protein L4 [Syntrophus aciditrophicus SB] gi|109893644|sp|Q2LQA0|RL4_SYNAS RecName: Full=50S ribosomal protein L4 gi|85721238|gb|ABC76181.1| LSU ribosomal protein L4 [Syntrophus aciditrophicus SB] Length = 217 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V +++ I +++ +F + ++ V+R Q +R G + +KGRS+V+ Sbjct: 11 MLVAEVFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGG 70 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGGG FGPVP + +PKKVR ALR LS K+ Sbjct: 71 GKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQG 130 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ + E KTK L AL + + + + ++RNI I ++ +G Sbjct: 131 QKLVVLKDFPLDEIKTKKFKEVVDRFGLKKALFVT-EERNEFLEKSSRNIAGIKMVRSEG 189 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+L LV+ + A++ LE K Sbjct: 190 LNVYDVLNHEHLVIIEPAVKKLEGALK 216 >gi|297181139|gb|ADI17336.1| hypothetical protein [uncultured Oceanospirillales bacterium HF0070_21F08] Length = 200 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K R+ V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRAAVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F P + +K+ ALR S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPLWRGGGKTFAAEPRDFSQKVNRKMYRGALRCIFSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + ++ + L+LS+ LI+ ++D N LAARN+P +++ G++ ++ Sbjct: 122 EFNIDSPKTKQVASKLKDLELSSVLIVT-SEVDENLYLAARNLPKVDIRDASGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ A++ LE+ Sbjct: 181 AFEKVLVTVPALKQLEEAL 199 >gi|257440268|ref|ZP_05616023.1| ribosomal protein L4/L1 family protein [Faecalibacterium prausnitzii A2-165] gi|257197302|gb|EEU95586.1| ribosomal protein L4/L1 family protein [Faecalibacterium prausnitzii A2-165] Length = 207 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V +++G+ I +S+ +F + P + + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 121 GNMVVVDKFTCDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L KL++S A + LE+ Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206 >gi|16329940|ref|NP_440668.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803] gi|2500235|sp|P73319|RL4_SYNY3 RecName: Full=50S ribosomal protein L4 gi|1652426|dbj|BAA17348.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803] Length = 210 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 108/210 (51%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G S++ + + I+ R L Q R G + +K R+EV Sbjct: 1 MVDCIVKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A++ + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTAIASRA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 ++++V++ + KTK L T +++ ++ N L+ RNIP + +L Sbjct: 119 DNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENVFLSGRNIPYLKIL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YD+L +V + +A+E +++ + Sbjct: 179 RADNLNIYDVLVADTIVATATALEKIQEVY 208 >gi|294784803|ref|ZP_06750091.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27] gi|294486517|gb|EFG33879.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27] Length = 209 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++ +K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVIFTKEALAVVEEVL 208 >gi|85374464|ref|YP_458526.1| 50S ribosomal protein L4 [Erythrobacter litoralis HTCC2594] gi|122544174|sp|Q2N9B2|RL4_ERYLH RecName: Full=50S ribosomal protein L4 gi|84787547|gb|ABC63729.1| ribosomal protein L4 [Erythrobacter litoralis HTCC2594] Length = 207 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G + + + +F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKAAGDVELDDAVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K QKG+G ARH + F GGGKA G +L KK+R+L L+ ALS K Sbjct: 61 AKFGRQKGSGNARHGDRGAPIFIGGGKAHGARKRDFNPSLNKKIRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L K+ KTK L F + L+IDG ++ F AA N+P +N+LP G Sbjct: 121 -LVVVDSLDLKDAKTKVLKGHFDKAGWNGKVLVIDGESVNEGFSKAAGNLPGVNVLPAMG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205 >gi|227494546|ref|ZP_03924862.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436] gi|226832280|gb|EEH64663.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436] Length = 212 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + ++G+ G I + IF + ++ +V+ Q R G +K R +VA G Sbjct: 3 AKVEITGVNGKSAGTIELPAAIFDAETNVPLIHQVVVAQLAAARQGTHATKTRGQVAGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S F GGG GP P PKK+++ AL ALSD+ + Sbjct: 63 KKPYRQKGTGRARQGSIRAPHFTGGGVVHGPQPRDYSQRTPKKMKAGALYGALSDRARNG 122 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+ +V ++ TK T L L N L++ + D L+ RN+P +++L V Sbjct: 123 RIHVVTAVVEGEKPSTKAARTLLEGLCGLRNTLVVVSRE-DVTAVLSVRNLPQVHVLFVD 181 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD++R +V ++ A+E Sbjct: 182 QLNTYDVMRSENVVFTQVALETF 204 >gi|15607842|ref|NP_215216.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv] gi|15840109|ref|NP_335146.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CDC1551] gi|31791887|ref|NP_854380.1| 50S ribosomal protein L4 [Mycobacterium bovis AF2122/97] gi|121636624|ref|YP_976847.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660477|ref|YP_001282000.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|148821907|ref|YP_001286661.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis F11] gi|167967944|ref|ZP_02550221.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|215402486|ref|ZP_03414667.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 02_1987] gi|215410257|ref|ZP_03419065.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|215425944|ref|ZP_03423863.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T92] gi|215429542|ref|ZP_03427461.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|215444825|ref|ZP_03431577.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|218752352|ref|ZP_03531148.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis GM 1503] gi|219556551|ref|ZP_03535627.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|224989096|ref|YP_002643783.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253797645|ref|YP_003030646.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435] gi|254231022|ref|ZP_04924349.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C] gi|254363649|ref|ZP_04979695.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str. Haarlem] gi|254549663|ref|ZP_05140110.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185584|ref|ZP_05763058.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CPHL_A] gi|260199712|ref|ZP_05767203.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T46] gi|260203873|ref|ZP_05771364.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis K85] gi|289442103|ref|ZP_06431847.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46] gi|289446262|ref|ZP_06436006.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A] gi|289552959|ref|ZP_06442169.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605] gi|289568646|ref|ZP_06448873.1| ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|289573310|ref|ZP_06453537.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85] gi|289744426|ref|ZP_06503804.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987] gi|289749209|ref|ZP_06508587.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92] gi|289752749|ref|ZP_06512127.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|289756790|ref|ZP_06516168.1| ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|289760829|ref|ZP_06520207.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503] gi|294996197|ref|ZP_06801888.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 210] gi|297633201|ref|ZP_06950981.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 4207] gi|297730181|ref|ZP_06959299.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN R506] gi|298524193|ref|ZP_07011602.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|306774813|ref|ZP_07413150.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001] gi|306781455|ref|ZP_07419792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002] gi|306783354|ref|ZP_07421676.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003] gi|306787723|ref|ZP_07426045.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004] gi|306794490|ref|ZP_07432792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005] gi|306796456|ref|ZP_07434758.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006] gi|306802316|ref|ZP_07438984.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008] gi|306806526|ref|ZP_07443194.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007] gi|306966723|ref|ZP_07479384.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009] gi|306970915|ref|ZP_07483576.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010] gi|307078645|ref|ZP_07487815.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011] gi|307083209|ref|ZP_07492322.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012] gi|313657508|ref|ZP_07814388.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN V2475] gi|46397667|sp|P60728|RL4_MYCBO RecName: Full=50S ribosomal protein L4 gi|46397668|sp|P60729|RL4_MYCTU RecName: Full=50S ribosomal protein L4 gi|166234687|sp|A1KGI3|RL4_MYCBP RecName: Full=50S ribosomal protein L4 gi|166234691|sp|A5U088|RL4_MYCTA RecName: Full=50S ribosomal protein L4 gi|254803746|sp|C1AL36|RL4_MYCBT RecName: Full=50S ribosomal protein L4 gi|1806170|emb|CAB06465.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium tuberculosis H37Rv] gi|13880259|gb|AAK44960.1| ribosomal protein L4 [Mycobacterium tuberculosis CDC1551] gi|31617474|emb|CAD93584.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium bovis AF2122/97] gi|121492271|emb|CAL70738.1| Probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600081|gb|EAY59091.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C] gi|134149163|gb|EBA41208.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str. Haarlem] gi|148504629|gb|ABQ72438.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra] gi|148720434|gb|ABR05059.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis F11] gi|224772209|dbj|BAH25015.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319148|gb|ACT23751.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435] gi|289415022|gb|EFD12262.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46] gi|289419220|gb|EFD16421.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A] gi|289437591|gb|EFD20084.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605] gi|289537741|gb|EFD42319.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85] gi|289542400|gb|EFD46048.1| ribosomal protein L4 [Mycobacterium tuberculosis T17] gi|289684954|gb|EFD52442.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987] gi|289689796|gb|EFD57225.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92] gi|289693336|gb|EFD60765.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054] gi|289708335|gb|EFD72351.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503] gi|289712354|gb|EFD76366.1| ribosomal protein L4 [Mycobacterium tuberculosis T85] gi|298493987|gb|EFI29281.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A] gi|308216703|gb|EFO76102.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001] gi|308325755|gb|EFP14606.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002] gi|308331848|gb|EFP20699.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003] gi|308335635|gb|EFP24486.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004] gi|308337250|gb|EFP26101.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005] gi|308343116|gb|EFP31967.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006] gi|308347003|gb|EFP35854.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007] gi|308350982|gb|EFP39833.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008] gi|308355578|gb|EFP44429.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009] gi|308359536|gb|EFP48387.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010] gi|308363441|gb|EFP52292.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011] gi|308367079|gb|EFP55930.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012] gi|323720926|gb|EGB29992.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A] gi|326905076|gb|EGE52009.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148] gi|328457426|gb|AEB02849.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207] Length = 223 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ G I + ++F + ++ +V+ Q R G +K R EV+ G Sbjct: 10 KIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGR 69 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 70 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I I LV + TK +L +++ + D + RN+P +++L + Sbjct: 130 IHAITELVEGQNPSTKSARAFLASLTERKQVLVVIGRSDEAGAKSVRNLPGVHILAPDQL 189 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S A+ A Sbjct: 190 NTYDVLRADDVVFSVEALNA 209 >gi|121997648|ref|YP_001002435.1| 50S ribosomal protein L4 [Halorhodospira halophila SL1] gi|166234674|sp|A1WVC1|RL4_HALHL RecName: Full=50S ribosomal protein L4 gi|121589053|gb|ABM61633.1| LSU ribosomal protein L4P [Halorhodospira halophila SL1] Length = 205 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N GE G + VS+ F ++ ++ +V+ R G K RSEVA G Sbjct: 1 MELKLSNEKGEAAGQLEVSDQAFDAPFRESLVHQVVTAHLAGARAGTKAQKTRSEVAGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR + +RGGG+ F P + +K+ ALR LS+ + Sbjct: 61 KKPWRQKGTGNARAGTIRSPLWRGGGQTFAAKPRDFSQKVNRKMYRGALRSILSELARQD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ L KT+ L R L + LI+ ++D N +LAARN+P + ++ G+ Sbjct: 121 RLVVVKQLTVDAPKTRELKARLEGLGVREGLIVVD-EIDANLELAARNLPRLGVVDAAGV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++V+++SAI +E+ Sbjct: 180 DPASLVGAERVVITESAIRRVEEWL 204 >gi|293391696|ref|ZP_06636030.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952230|gb|EFE02349.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 200 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L L + LII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKELALEDVLIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K+V++ A++ +E+ Sbjct: 175 DPVSLIAFNKVVVTVDAVKQIEEML 199 >gi|254303419|ref|ZP_04970777.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323611|gb|EDK88861.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 209 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D V + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEEVL 208 >gi|224023619|ref|ZP_03641985.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM 18228] gi|224016841|gb|EEF74853.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM 18228] Length = 209 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GE+ G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEETGRKVTLNESIFGITPNDHAIYLDVKQYMASQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKALARKSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L +S L++ D+N L+ARN+ N++ Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVSGKKLLMVLSGADKNVYLSARNLERTNVMVAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++SA++A+E+ Sbjct: 181 ALNTYKVLDAETLVVTESALKAIEETL 207 >gi|160942900|ref|ZP_02090139.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii M21/2] gi|158445801|gb|EDP22804.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii M21/2] gi|295103926|emb|CBL01470.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii SL3/3] Length = 207 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V +++G+ I +S+ +F + P + + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 121 GNMVVVDKFACDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L KL++S A + LE+ Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206 >gi|325299131|ref|YP_004259048.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170] gi|324318684|gb|ADY36575.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170] Length = 209 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GE+ G + +++ IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGENTGRTVVLNDAIFGITPNDHAIYMAVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYSFKLNKKVKLLARKSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L + L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFETPKTKDFVNVVNNLKVAGKKLLVVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV++++A++A+E+ Sbjct: 181 ALNTYTVLNAETLVVTENALKAIEETL 207 >gi|85060255|ref|YP_455957.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans'] gi|109893639|sp|Q2NQM3|RL4_SODGM RecName: Full=50S ribosomal protein L4 gi|84780775|dbj|BAE75552.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans'] Length = 201 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGSRGQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ K KTK L + + + L + LII G +LD N LAARN+ +++ GI Sbjct: 117 RLIVVEQFSVKAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDANGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|227497182|ref|ZP_03927430.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434] gi|226833313|gb|EEH65696.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434] Length = 214 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 2/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + + + G+ G + +IF ++ ++ +V+ Q R G +K R V G Sbjct: 6 TVDIVDSKGKKTGSAELPAEIFDVETNIPLMHQVVVAQLAAARQGTHATKTRGAVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 66 KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGR 125 Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI S++ TK + R + AL++ + D L+ RN P ++ + Sbjct: 126 IHVITEFVTSEKPSTKSALGALRNITDRKALVV-ATRADELTALSLRNAPEALVIWADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V + +A+++ Sbjct: 185 NTYDVLVNDDVVFTAAALDSF 205 >gi|254429193|ref|ZP_05042900.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881] gi|196195362|gb|EDX90321.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881] Length = 200 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K RS+V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F VP + +K+ AL+ +S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + + + ++LS+ LI+ +D N LA+RN+P +++ QG++ ++ Sbjct: 122 EFTVDSPKTKTVAAKLKDMELSSVLIVTD-DVDENLFLASRNLPKVDVRDSQGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ A++ LE+ Sbjct: 181 AFEKVLITVPALKKLEEAL 199 >gi|255038090|ref|YP_003088711.1| 50S ribosomal protein L4 [Dyadobacter fermentans DSM 18053] gi|254950846|gb|ACT95546.1| ribosomal protein L4/L1e [Dyadobacter fermentans DSM 18053] Length = 209 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G ++VSE++F ++P + ++ +R G KSK R+EV+++ Sbjct: 1 MELSVLNIKGEDTGKKVTVSEEVFGIEPSTHAIYLDVKLYLANQRQGTHKSKERAEVSHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV++LA R ALS K + Sbjct: 61 TRKIKRQKGTGGARAGSIKSPVFVGGGRIFGPRPRTYGFKLNKKVKALARRSALSVKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V++ KTK + +L L+N ++ ++D N L++RNIP + V Sbjct: 121 NAVSVLEAFTFDAPKTKSYLNVLNSLSLANTKTLLILPEIDNNVYLSSRNIPKAKVTTVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD++ +L++S+SAI LE + Sbjct: 181 SVNTYDLMNADRLLISESAISILETQL 207 >gi|253581391|ref|ZP_04858617.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725] gi|251836755|gb|EES65289.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725] Length = 210 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIID---GCQLDRNFQLAARNIPNINLL 176 DI+V+D KTK ++ A++ + L + Q D N L+ RN+ N +L Sbjct: 121 GDILVLDG-TIDTPKTKTIIALTNAINATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209 >gi|282880999|ref|ZP_06289690.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS 5C-B1] gi|281305222|gb|EFA97291.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS 5C-B1] Length = 209 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYGFKLNKKVKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + ++ ++++N L+ARN+ ++ Sbjct: 121 NSILVVEDFNLDAPKTKDFVNIAKNLKVDGRKTLLVLPEVNKNVYLSARNLQQAEVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L L++++++++A+++ Sbjct: 181 TLNTYKVLNADVLIMTENSLKAIDEIL 207 >gi|90417570|ref|ZP_01225488.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207] gi|90330591|gb|EAS45887.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207] Length = 204 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G G + VSE F + Q ++ + + R G K RS V+ G Sbjct: 1 MELAIATPKGNK-GTVEVSELAFGTEFNQDLVHQTVVAFLAGARQGTRAQKNRSAVSGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +RGGG F P L +K+ A+R +S+ + Sbjct: 60 RKPHAQKGSGRARAGTIRSPIWRGGGVTFAATPQDHSQKLNRKMYRAAMRSIVSELARQD 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L+ + + L+ +I+ ++ N LA+RN+ +++ + Sbjct: 120 RLIVVEEFGIDAPKTKLLIAKLQEFSLTEVMIVT-EEVSENLYLASRNLHKVDVRDAAAV 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ LE+ Sbjct: 179 DPVSLINFDKVLVTVPALKKLEEIL 203 >gi|313112879|ref|ZP_07798525.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624784|gb|EFQ08093.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 207 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V +++G+ I +S+ +F + P + + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D E KTK +V A+ ++ +D F +A NI + Sbjct: 121 GNMVVVDKFACDEYKTKTVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L KL++S A + LE+ Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206 >gi|17231706|ref|NP_488254.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120] gi|46576839|sp|Q8YPI0|RL4_ANASP RecName: Full=50S ribosomal protein L4 gi|17133349|dbj|BAB75913.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120] Length = 210 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTAFVSRI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+++++ KTK LV F + +++ + N L+ARNI N+ L+ Sbjct: 119 DDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ SA+E +++ + Sbjct: 179 AADQLNVYDLLHADKIVVTTSALEKIQEVY 208 >gi|294789224|ref|ZP_06754463.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC 29453] gi|294482965|gb|EFG30653.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC 29453] Length = 206 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLINAQGQVSGSVAGSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+NL + KTK + + L L L I QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIENLSAATPKTKEFADQVKNLGLEQVLFIT-KQLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K+VL+K A+ LE+++ Sbjct: 180 ADPYSLLRYKKVVLTKEAVAQLEEQW 205 >gi|297564038|ref|YP_003683011.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848487|gb|ADH70505.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 3/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N +G KG + + + +FA + ++ +V+ Q R G +K R +V Sbjct: 1 MAQIEVKNPEGGTKGSVELPDTVFAQQVSIPLIHQVVNAQLAAGRQGTHATKTRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GKKPYRQKGTGRARQGSIRAPQYTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 I V+ V+++ ++K+ + R + S+ +++ + D + + A RN+ +++L Sbjct: 121 GRIHVVSQFVAEDLESKFTQTALKALRQVTESDKVLVVLARDDEHNRRALRNVEEVHILD 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++ Sbjct: 181 ADQVNTYDVLYSDDVVFTEAGYAEF 205 >gi|85709056|ref|ZP_01040122.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1] gi|85690590|gb|EAQ30593.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1] Length = 207 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ +DG+ G I +S+D+F ++P+ IL RV+ WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQKIDGKASGDIELSDDVFGVEPRADILHRVVTWQLENRRATARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + F GGGKA G +L KK+R+L L+ ALS K Sbjct: 61 KKFGAQKGSGGARHGDRGAPIFIGGGKAHGARKRDFNQSLNKKIRALGLKMALSTKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L KE KT+ L F L+IDG ++ F+ AA N+ +N+LP G Sbjct: 121 -LVVLDSLELKEAKTQALKGHFDKHGFAGKVLVIDGESVNDGFKQAAGNLKGVNVLPAAG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL L+L+K A+E LE RF Sbjct: 180 ANVYDILNHDTLILTKDAVEKLEARF 205 >gi|226305342|ref|YP_002765300.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4] gi|229489366|ref|ZP_04383229.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis SK121] gi|226184457|dbj|BAH32561.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4] gi|229323463|gb|EEN89221.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis SK121] Length = 224 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ G+ G + + +IF +L +V+ Q R G +K R +V G Sbjct: 9 TLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHSTKTRGDVRGGGK 68 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 69 KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 128 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LV+ + TK + + L++ + D + +N+ ++ + + Sbjct: 129 IHVITELVAGQTPSTKGAIAFLGEISDRKKLLLVVGRQDVAAWKSVQNLEGVHPIAPDQL 188 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 189 NTYDVLNADDVVFSVEALNAF 209 >gi|91791540|ref|YP_561191.1| 50S ribosomal protein L4 [Shewanella denitrificans OS217] gi|120596990|ref|YP_961564.1| 50S ribosomal protein L4 [Shewanella sp. W3-18-1] gi|126176354|ref|YP_001052503.1| 50S ribosomal protein L4 [Shewanella baltica OS155] gi|146294840|ref|YP_001185264.1| 50S ribosomal protein L4 [Shewanella putrefaciens CN-32] gi|152998750|ref|YP_001364431.1| 50S ribosomal protein L4 [Shewanella baltica OS185] gi|160873327|ref|YP_001552643.1| 50S ribosomal protein L4 [Shewanella baltica OS195] gi|217975200|ref|YP_002359951.1| 50S ribosomal protein L4 [Shewanella baltica OS223] gi|304412766|ref|ZP_07394368.1| ribosomal protein L4/L1e [Shewanella baltica OS183] gi|307307430|ref|ZP_07587165.1| ribosomal protein L4/L1e [Shewanella baltica BA175] gi|123357238|sp|Q12SV8|RL4_SHEDO RecName: Full=50S ribosomal protein L4 gi|166199861|sp|A3DA71|RL4_SHEB5 RecName: Full=50S ribosomal protein L4 gi|166199862|sp|A6WHS9|RL4_SHEB8 RecName: Full=50S ribosomal protein L4 gi|166199864|sp|A4YBY2|RL4_SHEPC RecName: Full=50S ribosomal protein L4 gi|166199908|sp|A1REB5|RL4_SHESW RecName: Full=50S ribosomal protein L4 gi|189042883|sp|A9KWA3|RL4_SHEB9 RecName: Full=50S ribosomal protein L4 gi|254803752|sp|B8EBK4|RL4_SHEB2 RecName: Full=50S ribosomal protein L4 gi|91713542|gb|ABE53468.1| LSU ribosomal protein L4P [Shewanella denitrificans OS217] gi|120557083|gb|ABM23010.1| LSU ribosomal protein L4P [Shewanella sp. W3-18-1] gi|125999559|gb|ABN63634.1| LSU ribosomal protein L4P [Shewanella baltica OS155] gi|145566530|gb|ABP77465.1| LSU ribosomal protein L4P [Shewanella putrefaciens CN-32] gi|151363368|gb|ABS06368.1| ribosomal protein L4/L1e [Shewanella baltica OS185] gi|160858849|gb|ABX47383.1| ribosomal protein L4/L1e [Shewanella baltica OS195] gi|217500335|gb|ACK48528.1| ribosomal protein L4/L1e [Shewanella baltica OS223] gi|304348846|gb|EFM13262.1| ribosomal protein L4/L1e [Shewanella baltica OS183] gi|306910218|gb|EFN40651.1| ribosomal protein L4/L1e [Shewanella baltica BA175] gi|315265554|gb|ADT92407.1| ribosomal protein L4/L1e [Shewanella baltica OS678] gi|319424581|gb|ADV52655.1| ribosomal protein L4/L1e [Shewanella putrefaciens 200] Length = 201 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQSA----LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +RGGG F + KK+ AL+ LS+ Sbjct: 57 KKPWRQKGTGRARAGSVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + +A++L + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ + ++++ A++ +E+ Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200 >gi|237742671|ref|ZP_04573152.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13] gi|256846066|ref|ZP_05551524.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2] gi|229430319|gb|EEO40531.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13] gi|256719625|gb|EEU33180.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2] Length = 209 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D + KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208 >gi|329901063|ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium IMCC9480] gi|327549263|gb|EGF33841.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G SK K R EV +T Sbjct: 1 MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ + + KTK L ++ + + L +++I +D N LA+RN+P++ ++ + Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++K+A+ +E+ Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEEML 206 >gi|195114622|ref|XP_002001866.1| GI14673 [Drosophila mojavensis] gi|193912441|gb|EDW11308.1| GI14673 [Drosophila mojavensis] Length = 911 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + + N+D G++ + D+FA +P+ ++ + WQ + + + +K R+EV Sbjct: 681 QAWIENVDAVTERKVGLMELHPDVFAAQPRVDVIQENIEWQRKYRYVSMAHTKTRAEVRG 740 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S F+GGG GP P + LP R + L LS K Sbjct: 741 GGRKPWPQKGMGRARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKL 800 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLL 176 +D+ +I+++ +++ + + + LI+D + N A +I +NL+ Sbjct: 801 AQDDLHIIEDVEIPTKDAQFIRDLIQERNWGPSVLIVDKHDVFPENICYATDSIGYVNLM 860 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+ A++ LE+R Sbjct: 861 PAYGLNVYSMLKHDTLVLTVEAVKHLEERL 890 >gi|225076396|ref|ZP_03719595.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens NRL30031/H210] gi|241759656|ref|ZP_04757757.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114] gi|261380560|ref|ZP_05985133.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703] gi|319639550|ref|ZP_07994297.1| 50S ribosomal protein L4 [Neisseria mucosa C102] gi|224952244|gb|EEG33453.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens NRL30031/H210] gi|241320028|gb|EER56409.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114] gi|284796528|gb|EFC51875.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703] gi|317399121|gb|EFV79795.1| 50S ribosomal protein L4 [Neisseria mucosa C102] Length = 206 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G ++VS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLAVSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVNHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|52426102|ref|YP_089239.1| 50S ribosomal protein L4 [Mannheimia succiniciproducens MBEL55E] gi|81609390|sp|Q65QV6|RL4_MANSM RecName: Full=50S ribosomal protein L4 gi|52308154|gb|AAU38654.1| RplD protein [Mannheimia succiniciproducens MBEL55E] Length = 200 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LAVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D KTK LV + + L L + LII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKDLALEDVLIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K+V++ A++ +E+ Sbjct: 175 DPVSLIAFNKVVVTVDAVKQIEEML 199 >gi|67923584|ref|ZP_00517056.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501] gi|67854554|gb|EAM49841.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501] Length = 210 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +V+N GE+ G ++ + + +L R + R G + SK R+EV Sbjct: 1 MVDCNVKNWQGEEVGQATLELKVAKEESASHLLHRAVVRHLANARQGNASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A++ + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSKKMNRKERRLALRTAIASRV-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + KTK L + + S + + + N L+ARN+ + +L Sbjct: 119 EDMIVVENFTEQLPQPKTKELASALARWGVEPSEKVALVLLEAGDNIYLSARNLCFVKIL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ ++ +++ + Sbjct: 179 RADSLNVYDLLNADKIVITSESLSKIQEVY 208 >gi|29831470|ref|NP_826104.1| 50S ribosomal protein L4 [Streptomyces avermitilis MA-4680] gi|46577225|sp|Q82DP4|RL4_STRAW RecName: Full=50S ribosomal protein L4 gi|29608585|dbj|BAC72639.1| putative ribosomal protein L4 [Streptomyces avermitilis MA-4680] Length = 221 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + + + G++ G + + +IF ++ +L +V+ Q R G K K R EV Sbjct: 1 MSTIDILSPSGDNAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALRHAL+D+ Sbjct: 61 GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120 Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I VI + + TK + + +++ + D L+ARN+P +++L Sbjct: 121 NARIHVITGVIEGETPSTKAAKSFLGKVSERKNVLLVIERSDEAALLSARNLPQVHILEP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204 >gi|227505215|ref|ZP_03935264.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940] gi|227198189|gb|EEI78237.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940] Length = 220 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V+ +G+ G + + +IF + ++ +V+ Q R G K+K R EV G Sbjct: 5 KLDVQTAEGKTNGSVELPAEIFDTEASIALMHQVVNAQLAAARQGTHKAKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG + GPVP PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGISHGPVPRDYSQRTPKKMIKAALFGALSDRARNER 124 Query: 123 IMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV + + F R + N L++ G + D N + +A N+PN+ +L Sbjct: 125 IHVIEELVPGQTPSTKAAKAFIERLTERKNVLLVVGRE-DINARRSANNLPNVQILDAGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ R Sbjct: 184 LNTYDVLYSDDVVFSVEALHTFVAR 208 >gi|284052649|ref|ZP_06382859.1| 50S ribosomal protein L4 [Arthrospira platensis str. Paraca] gi|291567785|dbj|BAI90057.1| 50S ribosomal protein L4 [Arthrospira platensis NIES-39] Length = 210 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +RN DGE+ G ++ + + I+ R L Q R G + +K RSEV Sbjct: 1 MVDCIIRNWDGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSRV-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 +DI+V++ V KTK L +S+ +++ + N L+ RN+ + + Sbjct: 119 DDIVVVEEFVTQLPRPKTKDLTAALERWGVSSSAKVLLVLPEKQENVYLSGRNVEKMRIC 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V + +A+ +++ + Sbjct: 179 LADSLNVYDVLAADKIVTTANALAKIQEVY 208 >gi|298491399|ref|YP_003721576.1| 50S ribosomal protein L4/L1e ['Nostoc azollae' 0708] gi|298233317|gb|ADI64453.1| ribosomal protein L4/L1e ['Nostoc azollae' 0708] Length = 210 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G S + + I+ R L Q R G + +K RSEV Sbjct: 1 MVESVVKNWQGEQVGETSFDLRVAKQETAAHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNLKLNRKERRLALRTAFVSRA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++ + KTK LV ++ ++ N L+ARNI N+ L+ Sbjct: 119 EDLIVVEEFSNELQRPKTKDLVAALARWGAAQEQKSLLILSEIAENVLLSARNIENLKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V++ +A+E +++ + Sbjct: 179 AADQLNVYDLLHADKIVVTPAALEKIQEVY 208 >gi|223041818|ref|ZP_03612008.1| 50S ribosomal protein L4 [Actinobacillus minor 202] gi|223017387|gb|EEF15808.1| 50S ribosomal protein L4 [Actinobacillus minor 202] Length = 200 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L L++ALII +D N LAARN+ +++ VQ I Sbjct: 116 RLVVVEKFEIDAPKTKALVQKLKDLALNDALIIT-ANVDENLFLAARNLYKVDVRDVQAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|189424411|ref|YP_001951588.1| 50S ribosomal protein L4 [Geobacter lovleyi SZ] gi|226730669|sp|B3E7T6|RL4_GEOLS RecName: Full=50S ribosomal protein L4 gi|189420670|gb|ACD95068.1| ribosomal protein L4/L1e [Geobacter lovleyi SZ] Length = 206 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ N++ E G +++ E IFA + ++ ++ + L+ Q +R G K+K R+EV+ Sbjct: 1 MPTIALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR Q+ GGG FGP P + KK R ALR LS + S Sbjct: 61 GKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + + TK + DL +LII + N L++RN+P + LL G Sbjct: 121 EKITVLDQIEFAKISTKDFAGFMKKFDLERSLIIT-EEPSTNLALSSRNVPYVKLLKADG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NV+D+L+ +V+++ A+ +E + Sbjct: 180 LNVFDVLKYQNIVMTEGAVRLVEGALQ 206 >gi|119511178|ref|ZP_01630295.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414] gi|119464166|gb|EAW45086.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414] Length = 212 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 8/212 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + I+ R L Q R G + +K RSEV Sbjct: 1 MVESVVKNWQGEQVGETTFELRVAKESTASHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYNQKLNRKERRLALRTAFVSRA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL---SNALIID-GCQLDRNFQLAARNIPNIN 174 +D++V+ + KTK LV + AL+I + N L+ARNI N+ Sbjct: 119 DDLIVVQDFSNELSRPKTKELVAALARWGAAPENKALLIMPIISSEDNVYLSARNIQNLK 178 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NVYD+L K+V++ SA+ +++ + Sbjct: 179 LIAADQLNVYDLLHADKIVITASALAKIQEVY 210 >gi|119484832|ref|ZP_01619314.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106] gi|119457650|gb|EAW38774.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106] Length = 210 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + VRN +GE G ++ + + I+ R L Q R G + SK R+EV Sbjct: 1 MADCVVRNWEGEQVGQANLELKVAKEENAAHIVHRALVRQMNNARQGSASSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSQKMNRKERRLALRTALQSRI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 DI+V++ KTK LV + + +++ + N L+ RNI + + Sbjct: 119 EDIVVVEEFLEQLPRPKTKDLVAAMSRWGIEPESKVLLVLPEKQENVYLSGRNIARMRIC 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL +V + +A+E +++ + Sbjct: 179 LADSLNVYDILHADNIVTTAAALEKIQEVY 208 >gi|257470827|ref|ZP_05634917.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] gi|317065031|ref|ZP_07929516.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] gi|313690707|gb|EFS27542.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185] Length = 210 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V + +F ++P Q +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIID---GCQLDRNFQLAARNIPNINLL 176 DI+V+D KTK ++ A++ + L + Q D N L+ RN+ N +L Sbjct: 121 GDILVLDG-TIDTPKTKTIIALTNAVNATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209 >gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus] Length = 302 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 14/215 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQ--------QGILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAE 127 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115 V+ G K + QKG+GRARH S +RGGG A GP P + LP KVR+L L+ AL+ Sbjct: 128 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALT 187 Query: 116 DKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIP 171 K +D+ ++D+L +YL + ++R S+ L++D ++ +N A + Sbjct: 188 VKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLN 246 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 SFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281 >gi|296282583|ref|ZP_06860581.1| 50S ribosomal protein L4 [Citromicrobium bathyomarinum JL354] Length = 207 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ +DG G I +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKIAVQKIDGGKAGEIELNDAVFGVEPRADILHRVVTWQLEKRRGTARPTRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG+G ARH + F GGGKA G +L KK+RSL LR ALS K Sbjct: 61 KKFGRQKGSGGARHGDRGAPIFIGGGKAHGARKRDFDPSLNKKIRSLGLRMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D+L K+ KTK L F L+IDG ++ F++AA N+P +N++P G Sbjct: 121 -LVIVDSLELKDAKTKALKGHFEKAGFNGKVLVIDGESVNDGFKMAAGNLPGVNVIPAVG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+K A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205 >gi|261400053|ref|ZP_05986178.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC 23970] gi|269210279|gb|EEZ76734.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC 23970] Length = 206 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|222056704|ref|YP_002539066.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32] gi|254803736|sp|B9M6U4|RL4_GEOSF RecName: Full=50S ribosomal protein L4 gi|221565993|gb|ACM21965.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32] Length = 207 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V N + G I +S+ +F + ++ ++ ++ Q +R G K R+ V+ + Sbjct: 1 MAKLDVYNTSHKKVGEIELSDAVFNDEVREYLIHEAVKIQLANRRAGTVAVKNRAAVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR K Q+ GGG AFGP P ++ KK R ALR ALS F + Sbjct: 61 GKKPFKQKGTGQARQGCKRAPQYPGGGVAFGPQPKTYNLSMNKKARRAALRSALSLLFKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + TK V + L AL++ + +RN +L+ARNI N+ +L +G Sbjct: 121 DKLTVLDAINLDTVSTKNFVGVLKGFSLDKALVVTDAE-NRNLELSARNIKNVKVLKTEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N++D+++ +++ +++++ +E + Sbjct: 180 LNIFDLMKYQRVIFTENSVRKVEGALQ 206 >gi|309379158|emb|CBX22289.1| 50S ribosomal protein L4 [Neisseria lactamica Y92-1009] Length = 206 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L + KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTVETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|262066303|ref|ZP_06025915.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum ATCC 33693] gi|294783641|ref|ZP_06748965.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA] gi|291379998|gb|EFE87516.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum ATCC 33693] gi|294480519|gb|EFG28296.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA] Length = 209 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL G+ G + V++ +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208 >gi|15828001|ref|NP_302264.1| 50S ribosomal protein L4 [Mycobacterium leprae TN] gi|221230478|ref|YP_002503894.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923] gi|3122749|sp|O32982|RL4_MYCLE RecName: Full=50S ribosomal protein L4 gi|254803747|sp|B8ZSB8|RL4_MYCLB RecName: Full=50S ribosomal protein L4 gi|2344834|emb|CAB11436.1| ribosomal protein L4 [Mycobacterium leprae] gi|13093554|emb|CAC30816.1| 50S ribosomal protein L4 [Mycobacterium leprae] gi|219933585|emb|CAR71958.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923] Length = 230 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 1/199 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ DG+ G I + ++F ++ +V+ Q R G +K R +V+ G Sbjct: 13 KIDVKTPDGKVDGTIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP PKK+ + ALR ALSD+ + Sbjct: 73 KPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKKMIAAALRGALSDRARNGR 132 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV K TK L +++ + D + RN+P ++LL + Sbjct: 133 IHAVTELVVGKTPSTKSAKEFLGTLTDRKQVLVVIGRSDETGAKSVRNLPGVHLLSPDQL 192 Query: 182 NVYDILRCSKLVLSKSAIE 200 N YD+LR LV S A+ Sbjct: 193 NTYDVLRADDLVFSVEALN 211 >gi|294010614|ref|YP_003544074.1| ribosomal protein L4 [Sphingobium japonicum UT26S] gi|292673944|dbj|BAI95462.1| ribosomal protein L4 [Sphingobium japonicum UT26S] Length = 207 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 123/205 (60%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LD G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVKVQTLDAAAAGEVELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DNL E KTK LV L+L+ AL IDG ++ +F A+ NI ++LLP G Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIIGVDLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205 >gi|226365596|ref|YP_002783379.1| 50S ribosomal protein L4 [Rhodococcus opacus B4] gi|226244086|dbj|BAH54434.1| 50S ribosomal protein L4 [Rhodococcus opacus B4] Length = 229 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ G+ G + + +IF +L +V+ Q R G +K R EV G Sbjct: 12 TLDVKVAGGKTNGTVELPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGK 71 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 72 KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 131 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LV+ + TK T + +++ + D + +N+ ++ + + Sbjct: 132 IHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVGRADIAAWKSVQNLEGVHPIAPDQL 191 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 192 NTYDVLNSDDVVFSVEALNAF 212 >gi|255324737|ref|ZP_05365851.1| ribosomal protein L4/L1 family protein [Corynebacterium tuberculostearicum SK141] gi|311740076|ref|ZP_07713910.1| ribosomal protein L4/L1 family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255298212|gb|EET77515.1| ribosomal protein L4/L1 family protein [Corynebacterium tuberculostearicum SK141] gi|311305149|gb|EFQ81218.1| ribosomal protein L4/L1 family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 217 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 5 KLDVHTSEGKTNGSVDLPAEIFDTEASIALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRDYAQRTPKKMIKAALFGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 125 IHVIEELVPGQKPSTKSAKAFLESLTERKNVLLVIGRE-DINARRSANNLPNVQILDAGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 184 LNTYDVLYSDDVVFSVEALHTFINR 208 >gi|238021592|ref|ZP_04602018.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147] gi|237866206|gb|EEP67248.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147] Length = 206 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + G+ G ++ S+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKLIDAKGQVSGSVAASDALFAREYNEALVHQLVVAFLANARSGNRAQKTRAEVNHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L + KTK + + L + L + QLD N L++RN+PN+ +L Sbjct: 121 ERLFVIESLSAATPKTKEFAEQVKNLGMEQVLFVT-KQLDENVYLSSRNLPNVLVLEATQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K A+ LE+++ Sbjct: 180 IDPYSLLRYKKVVITKEAVAQLEEQW 205 >gi|259909998|ref|YP_002650354.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96] gi|224965620|emb|CAX57152.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96] gi|283480095|emb|CAY76011.1| 50S ribosomal protein L4 (BL4) [Erwinia pyrifoliae DSM 12163] Length = 201 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L + LII G +L+ N LAARN+ +++ I Sbjct: 117 RLIVVEKFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAAI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|113460209|ref|YP_718266.1| 50S ribosomal protein L4 [Haemophilus somnus 129PT] gi|122945126|sp|Q0I162|RL4_HAES1 RecName: Full=50S ribosomal protein L4 gi|112822252|gb|ABI24341.1| LSU ribosomal protein L4P [Haemophilus somnus 129PT] Length = 200 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + + L++ALII LD N LAARN+ +++ VQ I Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKDMALTDALIIT-ASLDENLFLAARNLYKVDVRDVQAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ F Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEMF 199 >gi|255067457|ref|ZP_05319312.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256] gi|261364856|ref|ZP_05977739.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC 25996] gi|261378042|ref|ZP_05982615.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC 14685] gi|296313366|ref|ZP_06863307.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea ATCC 43768] gi|313667442|ref|YP_004047726.1| 50S ribosomal protein L4 [Neisseria lactamica ST-640] gi|255048252|gb|EET43716.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256] gi|269145492|gb|EEZ71910.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC 14685] gi|288566905|gb|EFC88465.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC 25996] gi|296840077|gb|EFH24015.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea ATCC 43768] gi|308388359|gb|ADO30679.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha710] gi|313004904|emb|CBN86330.1| 50S ribosomal protein L4 [Neisseria lactamica 020-06] gi|325131085|gb|EGC53808.1| ribosomal protein L4 [Neisseria meningitidis OX99.30304] gi|325137201|gb|EGC59796.1| ribosomal protein L4 [Neisseria meningitidis M0579] gi|325203022|gb|ADY98476.1| ribosomal protein L4 [Neisseria meningitidis M01-240149] gi|325207179|gb|ADZ02631.1| ribosomal protein L4 [Neisseria meningitidis NZ-05/33] Length = 206 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|183981054|ref|YP_001849345.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M] gi|226730696|sp|B2HSN2|RL4_MYCMM RecName: Full=50S ribosomal protein L4 gi|183174380|gb|ACC39490.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M] Length = 224 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E+ V+ DG+ G +++ ++F + ++ +V+ Q R G +K R +V+ G Sbjct: 13 EIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 73 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 132 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV+ + TK T + +++ + D+ + RN+P +++L + Sbjct: 133 IHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIGRDDQTGVKSVRNLPGVHILSPDQL 192 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S A+ A Sbjct: 193 NTYDVLRADDVVFSVEALNA 212 >gi|319778742|ref|YP_004129655.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9] gi|317108766|gb|ADU91512.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9] Length = 206 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ IS S+ IF + + ++ +++ R G K RSEV +T Sbjct: 1 MDLKLINDQGQSSETISASDAIFGREFNEALVHQLVVAYQANARGGNRAQKDRSEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L KK+ + +R S Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKLNKKMYRVGIRSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D KTK R + + L + LII LD N LA RN+P++ ++ + Sbjct: 121 DRIAVVDTFTFDSPKTKQAAARLKDMGLDSVLIITDS-LDENTYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+AI LE+ F Sbjct: 180 ADPLSLVHYKKVLITKAAIAQLEEMF 205 >gi|317050529|ref|YP_004111645.1| 50S ribosomal protein L4/L1e [Desulfurispirillum indicum S5] gi|316945613|gb|ADU65089.1| ribosomal protein L4/L1e [Desulfurispirillum indicum S5] Length = 207 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +SV N++ E G +++S+++F + ++ V+ Q +R G K RS V+ Sbjct: 1 MPVVSVINVNNEKVGEVALSDELFGGAVKPHLMHEVVVAQLAARRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 GSK + QKGTGRAR + +R GG FGP P + KKVR AL ALS+K Sbjct: 61 GSKPWRQKGTGRARAGTSRSPLWRTGGVIFGPTPRSYEKKVNKKVRRQALVSALSEKAAQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+V D+ + KTK F L ++ ++D LA RN+P + L+ +G Sbjct: 121 QSIVVFDDFALESPKTKLANQVFAKCSLDRKVLFVVDEMDSPKALAMRNLPFVKLIKPEG 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +NVYD++ L KS E L Sbjct: 181 LNVYDVVNAKVLAFEKSTAERL 202 >gi|195034530|ref|XP_001988917.1| GH11428 [Drosophila grimshawi] gi|193904917|gb|EDW03784.1| GH11428 [Drosophila grimshawi] Length = 923 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + N+D G++ + D+FA +P+ I+ + WQ + + + +K R+EV Sbjct: 693 QVWIENVDAVKERKVGMMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRG 752 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S F+GGG GP P + LP R L L LS K Sbjct: 753 GGRKPWPQKGMGRARHGSIRSPLFKGGGIVHGPRSPTSHFYMLPFYTRVLGLTSTLSVKL 812 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLL 176 +D+ +I+N+ +++ + + LIID ++ N A +I +NL+ Sbjct: 813 AQDDLHIIENVELPTRDAQFIRDLIAERNWGPSVLIIDKQEMFPENICYATDSIGYVNLM 872 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+ A++ LE R Sbjct: 873 PSFGLNVYSMLKHDTLVLTVEAVKHLEQRL 902 >gi|111220547|ref|YP_711341.1| 50S ribosomal protein L4 [Frankia alni ACN14a] gi|111148079|emb|CAJ59747.1| 50S ribosomal protein L4 [Frankia alni ACN14a] Length = 236 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +SV +G D G + +F + ++ +V+ Q R G +K R EV G Sbjct: 17 TVSVHAPNGGDGGSAELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGR 76 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N Sbjct: 77 KPYRQKGTGRARQGSLRAPQFTGGGVVHGPTPRSYDQRTPKKMKAAALRGALSDRARNNR 136 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ +LVS + TK VT R + + +++ + D + RN+ ++LL + Sbjct: 137 VHVVSSLVSGEAPSTKAAVTALRTVADTRRVLVVASRTDELTWKSLRNVAAVHLLDPGQL 196 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V ++ A+ A R Sbjct: 197 NTYDVLVSDDVVFTEEALAAFLAR 220 >gi|300088196|ref|YP_003758718.1| 50S ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527929|gb|ADJ26397.1| ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 210 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 115/202 (56%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N G+ ++VS+++FA+ ++ + + Q+ R G S ++ RSEV+ T Sbjct: 1 MEIPVYNTSGQVVRNVTVSDELFAVPMNDAVVHQAMVAQAANARQGTSSTRTRSEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KM+ QKGTG AR S+ GGG FGP P +LPKK+R LA+R LSDK S Sbjct: 61 QKMFRQKGTGEARAGSRKSGLRPGGGVIFGPKPRDYSKSLPKKMRRLAIRCLLSDKVASG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+D L KT+ + AL++ ++ II +D N L+ARN+P + P I Sbjct: 121 SLKVVDALALDAPKTREMTQVLTALEIGSSAIIATAGVDENVVLSARNLPRVKTTPANLI 180 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 NV D+L+ L+L++ A+E ++ Sbjct: 181 NVGDLLKYDTLLLTEQALEVVQ 202 >gi|295101415|emb|CBK98960.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii L2-6] Length = 207 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +V +++G+ I +S+ +F + P + + + +R G +K R EV+ Sbjct: 1 MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S Q+ GG A GP P + + KV+ LAL LSDK + Sbjct: 61 GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D E KTK +V+ A+ ++ +D F +A NI + Sbjct: 121 GNMVVVDKFACDEYKTKTVVSMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L KL++S A + LE+ Sbjct: 181 VNTYDVLNADKLIISVGAAKKLEEVL 206 >gi|188535277|ref|YP_001909074.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99] gi|226730663|sp|B2VK63|RL4_ERWT9 RecName: Full=50S ribosomal protein L4 gi|188030319|emb|CAO98208.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99] Length = 201 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKSQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + + + L + LII G +L+ N LAARN+ +++ GI Sbjct: 117 RLIVVEQFSLEAPKTKLLAEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200 >gi|92112555|ref|YP_572483.1| 50S ribosomal protein L4P [Chromohalobacter salexigens DSM 3043] gi|122420788|sp|Q1R0H4|RL4_CHRSD RecName: Full=50S ribosomal protein L4 gi|91795645|gb|ABE57784.1| LSU ribosomal protein L4P [Chromohalobacter salexigens DSM 3043] Length = 202 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 1/200 (0%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G D G + VS+ F + + ++ +V+ R G K RSEV G K + Sbjct: 3 LNLAGADAGTVEVSDATFGKEFNESLVHQVVTAYFAAGRQGTRAQKTRSEVRGGGKKPWR 62 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +R GG F P + +K+ A+R LS+ ++V+ Sbjct: 63 QKGTGRARAGTIRSPLWRSGGVTFAARPQDYTQKVNRKMYRAAMRSILSELVRQERLVVV 122 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D+ KTK LV + + LDL ALI+ +D LAARNIP ++++ V + + Sbjct: 123 DSFEVDAPKTKQLVAKLKDLDLEKALIVT-EDIDEKLFLAARNIPYVDVVDVAAADPVSL 181 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA+ E++ Sbjct: 182 VAFDKVLVTVSALRKFEEKL 201 >gi|294674770|ref|YP_003575386.1| 50S ribosomal protein L4 [Prevotella ruminicola 23] gi|294471640|gb|ADE81029.1| ribosomal protein L4 [Prevotella ruminicola 23] Length = 209 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ ++ G ++++E IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNIKCQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G ARH + RGGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARHGDINSPLLRGGGRVFGPTPRDYGFKLNKKVKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + + L + + + N L+ARN+ ++ Sbjct: 121 NAIVVVEDFTMEAPKTKEFINIAKNLKVDGKKTLFVMSGTNNNVYLSARNLQGTEVMEAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++ A+E + Sbjct: 181 LVNTYKVLNADALVITEKALETI 203 >gi|193211852|ref|YP_001997805.1| 50S ribosomal protein L4 [Chlorobaculum parvum NCIB 8327] gi|226730637|sp|B3QR77|RL4_CHLP8 RecName: Full=50S ribosomal protein L4 gi|193085329|gb|ACF10605.1| ribosomal protein L4/L1e [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G + G + ++++DIFA++ + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNIQGAETGEVVTLNDDIFAVEVSEHAMYLDVKAILANRRQGTHKTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +KV+ LA R ALS K + Sbjct: 61 GKKPYRQKGTGNARQGSSRSPIMVGGGTIFGPQPRSYEQKVNRKVKQLARRSALSSKAAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KT+ + + L L ++ D + RNI +N+ Sbjct: 121 GQIVVVEDFSLESIKTRPVADMLKNLGLAEKKTLLMMPHYDNVVSTSGRNIEKLNIQVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL ++ K+A++ +E+ Sbjct: 181 QASTYDILNSQAVLFQKAALQKIEETL 207 >gi|288942071|ref|YP_003444311.1| 50S ribosomal protein L4/L1e [Allochromatium vinosum DSM 180] gi|288897443|gb|ADC63279.1| ribosomal protein L4/L1e [Allochromatium vinosum DSM 180] Length = 203 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 3/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++RN G + VS+ +F ++ + G++ +V+ R G K R+ V+ G Sbjct: 1 MEIAIRNHTG--ASSVQVSDAVFGVEYKPGLVHQVVTAYMAGARAGTKAQKNRAAVSGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK + QKGTGRAR + +R GG F P + +K+ A+R LS+ + Sbjct: 59 SKPWRQKGTGRARAGTSRSPLWRSGGVTFAAQPRDYGQKVNRKMYRGAVRSILSELVRTE 118 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ L +E KTK L+ ++ DL++ALI+ D LAARN+P +++L Q + Sbjct: 119 RLVVVSELALEEAKTKALIALLKSHDLTDALILTDG-FDDTLYLAARNLPKVDVLSAQEV 177 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++ +++AI+ LE+R Sbjct: 178 DPVSLVAFETILATEAAIKKLEERL 202 >gi|240947883|ref|ZP_04752323.1| 50S ribosomal protein L4 [Actinobacillus minor NM305] gi|240297845|gb|EER48281.1| 50S ribosomal protein L4 [Actinobacillus minor NM305] Length = 200 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L L++ALII +D N LAARN+ +++ VQ I Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKDLALTDALIIT-ANVDENLFLAARNLYKVDVRDVQAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|149928570|ref|ZP_01916794.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105] gi|149822711|gb|EDM81974.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105] Length = 206 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ + VS+ +F + + ++ +++ R G + K RSEV + Sbjct: 1 MELKVISDSGQASQTVQVSDVVFGREYNEPLIHQLVVAYQANARQGTRQQKDRSEVRAST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR + S +RGGGK F P L KK+ + LS Sbjct: 61 RKPWKQKGTGRARAGAVSSPLWRGGGKTFPNSPDENFTQKLNKKMFRAGVCSILSQLSRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK L + + + L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLVVVESLDLEAPKTKLLDQKLKGMGLDSVLMIVDS-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V +++AI+ L++ + Sbjct: 180 ADPLSLIYFKKVVATRAAIDKLQEMY 205 >gi|53715465|ref|YP_101457.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46] gi|60683437|ref|YP_213581.1| 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343] gi|253566671|ref|ZP_04844124.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5] gi|255011647|ref|ZP_05283773.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] gi|265767549|ref|ZP_06095215.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16] gi|313149483|ref|ZP_07811676.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] gi|81313515|sp|Q5L8B0|RL4_BACFN RecName: Full=50S ribosomal protein L4 gi|81608233|sp|Q64NK9|RL4_BACFR RecName: Full=50S ribosomal protein L4 gi|52218330|dbj|BAD50923.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46] gi|60494871|emb|CAH09678.1| putative 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343] gi|251944843|gb|EES85318.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5] gi|263252854|gb|EEZ24366.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16] gi|301164922|emb|CBW24483.1| putative 50S ribosomal protein L4 [Bacteroides fragilis 638R] gi|313138250|gb|EFR55610.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12] Length = 208 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKTLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKVFVEMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++S+++A+ Sbjct: 181 GLNTYRVLNAGVVVLTESSLKAI 203 >gi|296130494|ref|YP_003637744.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109] gi|296022309|gb|ADG75545.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109] Length = 228 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + D+F + ++ +V+ Q R G +K R EV G Sbjct: 6 TVDVLDEKGKKAGTADLPGDVFDVTTNVPLIHQVVVAQLAAVRQGTHDTKTRGEVRGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 66 KPYKQKGTGRARQGSTRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARAGR 125 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ E TK + L +++ + D + RN+ ++LL + Sbjct: 126 VHVVTGFAPGEVPSTKAALAVLDNLSGRKNVLVVVERQDEITWKSLRNVERVHLLVADQL 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V ++ A++A Sbjct: 186 NTYDVLISDDVVFTQGALDAF 206 >gi|114561337|ref|YP_748850.1| 50S ribosomal protein L4 [Shewanella frigidimarina NCIMB 400] gi|122301114|sp|Q089Q3|RL4_SHEFN RecName: Full=50S ribosomal protein L4 gi|114332630|gb|ABI70012.1| LSU ribosomal protein L4P [Shewanella frigidimarina NCIMB 400] Length = 201 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQSA----LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +RGGG F + KK+ AL+ S+ Sbjct: 57 KKPWRQKGTGRARAGSVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + +A++L + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ + ++++ A++ +E+ Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200 >gi|269104013|ref|ZP_06156710.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp. damselae CIP 102761] gi|268163911|gb|EEZ42407.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp. damselae CIP 102761] Length = 200 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + ++ +V+ + R G K RS+V+ G Sbjct: 1 MELVVKGANA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG +F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARSGTMRSPIWRKGGVSFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++N + KTK LV + L+L++ALI+ G +LD N LAARN+ +++ + I Sbjct: 116 RLIVVENFSVEAPKTKALVAKLNELELTDALIVTG-ELDENLFLAARNLYKVDVRDAKAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++A+E+ Sbjct: 175 DPVSLIAFEKVVMTADAVKAVEEML 199 >gi|148655336|ref|YP_001275541.1| 50S ribosomal protein L4/L1e [Roseiflexus sp. RS-1] gi|148567446|gb|ABQ89591.1| LSU ribosomal protein L4P [Roseiflexus sp. RS-1] Length = 223 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 111/199 (55%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + N GE+ GVI +S+ +F ++P ++ + + Q R+G + GR EV + Sbjct: 1 MEARLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S +GGG A GP P A+P+K+R LA+R ALS ++ Sbjct: 61 RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRKYTKAMPRKMRRLAVRSALSARYRDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +D L ++ +TK ++ AL+L+ +I Q D + +A N+PN+ L + Sbjct: 121 AITFLDRLTFEKPRTKDMIAVLNALNLTGKTLIVLDQKDEYVRRSANNLPNVKTLLAHYL 180 Query: 182 NVYDILRCSKLVLSKSAIE 200 NV D+L +V+ ++A++ Sbjct: 181 NVIDLLTHDHIVMLQAAVD 199 >gi|326334544|ref|ZP_08200755.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693313|gb|EGD35241.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 209 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++SE +F ++P + ++ +R G KSK R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV+ LA R LS K Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRVFGPRPKDYTQKLNKKVKRLARRSVLSQKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KTK AL + + ++N L++RNIP++N + Sbjct: 121 GAIIVLEDFNFETPKTKDFTQILAALGIQDKKSLFVLADTNKNVYLSSRNIPSVNTVTAY 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+ + +VL +SA+E ++ Sbjct: 181 ELNTYDVANATNVVLLESAVEVIQSNL 207 >gi|225849547|ref|YP_002729712.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense Az-Fu1] gi|225643372|gb|ACN98422.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense Az-Fu1] Length = 208 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N E G +++ EDIF + QG + V++W KR G +K K R+EVA + Sbjct: 1 MEFNVVNNKNEIVGKVNLKEDIFQTQVNQGTVWEVIKWHLATKRAGTAKVKTRAEVAGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRARH + F GGG A GP P +ALPKKVR L+ L+ K +N Sbjct: 61 RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYYALPKKVRKKVLKGVLTYKLNNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++ + KTK V + L N +++ + N + RNIP + +L +G Sbjct: 121 ELIVVEDFNFDQPKTKNAVEVLKNFGLENSKVLLVLPEKLENVIKSFRNIPKVKILVSEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YDIL K+++ KSA+E +++R Sbjct: 181 LNSYDILNSEKVIIFKSALEKIQERL 206 >gi|85057801|ref|YP_456717.1| 50S ribosomal protein L4 [Aster yellows witches'-broom phytoplasma AYWB] gi|109893576|sp|Q2NIV5|RL4_AYWBP RecName: Full=50S ribosomal protein L4 gi|84789906|gb|ABC65638.1| LSU ribosomal protein L1E [Aster yellows witches'-broom phytoplasma AYWB] Length = 207 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 110/207 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ N G+ ++ +F +KP Q +L V+ Q R G +K R+ VA Sbjct: 1 MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRARH S +RGGG FGP P + +KVR LAL+ ALS + + Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRNYSVKVNQKVRILALKSALSLQVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N ++V+DN+ KTK + L++++ +I Q+ LA+RN+ I L Sbjct: 121 NQLVVLDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +VY IL C +LVL+ A+ E+ K Sbjct: 181 ASVYQILNCKQLVLTADAVNYFEEVLK 207 >gi|67458671|ref|YP_246295.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2] gi|75536864|sp|Q4UMS8|RL4_RICFE RecName: Full=50S ribosomal protein L4 gi|67004204|gb|AAY61130.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2] Length = 207 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+KF Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|296141114|ref|YP_003648357.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162] gi|296029248|gb|ADG80018.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162] Length = 217 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 1/198 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ DG+ G + + IF ++P ++ +V+ Q R G +K R EV G Sbjct: 5 TLDVKTADGKTDGTVELPAAIFDVEPNISLMHQVVIAQLAAARAGTHSTKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR AL+++ + Sbjct: 65 KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALTERVREDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ LV+ +E TK L ++ + D Q + +N+PN + + Sbjct: 125 IHVVTELVAGQEASTKTARLFLAQLSERKKFLVVVGREDLTAQRSVQNLPNAKWIYPDQL 184 Query: 182 NVYDILRCSKLVLSKSAI 199 N YD+L LV S+ A+ Sbjct: 185 NTYDVLDADDLVFSREAL 202 >gi|270307843|ref|YP_003329901.1| ribosomal protein L4 [Dehalococcoides sp. VS] gi|270153735|gb|ACZ61573.1| ribosomal protein L4 [Dehalococcoides sp. VS] Length = 210 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 109/203 (53%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE IS+SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ VID L +E KT+ + AL + + +I D NF +ARNIP++ P + Sbjct: 121 ELKVIDQLSFEEPKTRDMAKILAALQVISPALIAVDNPDTNFIKSARNIPSVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+L+ +LV+++ A+ +E+ Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203 >gi|189460685|ref|ZP_03009470.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136] gi|189432644|gb|EDV01629.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136] Length = 209 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKTLARKSALAYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L + L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFEAPKTKEFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++SA++A+E+ Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEETL 207 >gi|300779844|ref|ZP_07089700.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium ATCC 33030] gi|300533954|gb|EFK55013.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V DG KG + + ++F + ++ +V+ Q R G K+K R EV G Sbjct: 5 TLDVHTADGATKGTVELPAELFDREASVPLMHQVVNAQLAAARQGTHKTKTRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GPVP PKK+ AL AL+++ ++ Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKKMIKAALAGALTNRAQNDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V++ LV + TK L ++++ + D N +L+ARN+P + +L + Sbjct: 125 IHVVEELVPGQTPSTKSARAFVERLTDRKSVLLVIGREDVNSRLSARNLPGVTILEPGQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V S A+ R Sbjct: 185 NTYDVLNADDVVFSVEALHDFVGR 208 >gi|297192702|ref|ZP_06910100.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC 25486] gi|197721643|gb|EDY65551.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 103/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K K R EV Sbjct: 4 MSTIDILSPAGDKSGTVELPAEIFDAKVSIPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR AL+D+ Sbjct: 64 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARH 123 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK T F + L++ + D L+ARN+P +++L Sbjct: 124 SRIHVVSGVVEGEVSTKAAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEPGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A E+ Sbjct: 184 LNTYDVLVSDDVVFTKAAFESF 205 >gi|239980055|ref|ZP_04702579.1| 50S ribosomal protein L4 [Streptomyces albus J1074] gi|291451912|ref|ZP_06591302.1| 50S ribosomal protein L4 [Streptomyces albus J1074] gi|291354861|gb|EFE81763.1| 50S ribosomal protein L4 [Streptomyces albus J1074] Length = 217 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKSRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V E TK + +++ + D L+ARN+P +++L Sbjct: 121 DRIHVVTGVVEGEVSTKAAKGLLGKISERKNVLLVIERSDETALLSARNLPQVHILDPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A E+ Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202 >gi|307294975|ref|ZP_07574817.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1] gi|306879449|gb|EFN10667.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1] Length = 207 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 88/205 (42%), Positives = 126/205 (61%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ LD + G + +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKVNVQTLDAQAAGDLELNDAVFGVEPRTDILHRVVLWQLEKRRAPTRATRERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G H L KKVR+L L+ ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSTKAKNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DNL E KTK LV L+L+ AL IDG ++ +F A+ NI +NLLP G Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDILR LVL+++A+E LE RF Sbjct: 181 NVYDILRADSLVLTRAAVEKLEARF 205 >gi|157826062|ref|YP_001493782.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford] gi|166199855|sp|A8GPE9|RL4_RICAH RecName: Full=50S ribosomal protein L4 gi|157800020|gb|ABV75274.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford] Length = 207 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 123/207 (59%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + ++ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP V LPKKVR L L HALS+KF Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GRLLVIDSLKLDQPKTSALVNILSKFQGKSFFVIDGNEVDTNFSLAAKNIYNTAIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRYEYVLLSQEAVSVLEERLR 207 >gi|224827018|ref|ZP_03700115.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002] gi|224600684|gb|EEG06870.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ G+ + SE +F + + ++ +V+ R K R+EV ++ Sbjct: 1 MELKVINVQGQAVEGLQASEGLFGREYNEALVHQVVTAFLANARSANRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPIWRGGGRTFPNSPDENFSHKVNRKMFRAGMAAILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+DN + KTK V +++ + L I ++D N L++RN+PN+ ++ Q Sbjct: 121 ERLIVVDNFAVETPKTKEFVGLVKSMGIEQGLFIT-NEMDENLYLSSRNLPNVLVIETQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V+++ A++ LE+++ Sbjct: 180 VDPYSLLRFKKIVITRDAVKQLEEQW 205 >gi|261391679|emb|CAX49128.1| 50S ribosomal protein L4 [Neisseria meningitidis 8013] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205 >gi|326799128|ref|YP_004316947.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21] gi|326549892|gb|ADZ78277.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21] Length = 209 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N+ G++ G + + E +F + P + ++ +R G KSK R+E+A + Sbjct: 1 MEVQVLNISGKETGAKVQLPEAVFGVTPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG AR S F GGG+ FGP P L KK+++LA + ALS K Sbjct: 61 TRKLHKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+D + KTK V L+++N ++ L++N L++RN+ ++ Sbjct: 121 NNIVVLDEVNFDSIKTKNYVKLVNDLNVANEKTLLVLPALNKNVYLSSRNLKKTKVITAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L KL+L+ ++ LE+ F Sbjct: 181 DINTYDVLNAGKLLLTTETVKTLEEAF 207 >gi|302336381|ref|YP_003801588.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084] gi|301320221|gb|ADK68708.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084] Length = 208 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N++G+ G + +S+ +F + P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIEVKNVEGKAAGEVELSDSVFGITPNIPVMHQVVVAYEASMRQGTHSTKNRSSVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K Y QKGTGRAR + Q+ GGG FGP P + K + LA+R ALS K Sbjct: 61 GAKPYRQKGTGRARQGTIRAPQWVGGGVVFGPTPRSHAKRVNNKEKKLAMRSALSGKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D L KE KTK V +AL + + I D LA RN+P ++++ Sbjct: 121 SELILVDELYFKEPKTKLAVAALKALGIEGKRVTIVVADDDVITYLAFRNLPKVSIIAAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 N +++ LV+S + + LE+ Sbjct: 181 EANTRNLVDNGALVMSTAVAKQLEEVL 207 >gi|298370590|ref|ZP_06981905.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281200|gb|EFI22690.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMAAILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + R L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVRNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|59802159|ref|YP_208871.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090] gi|194099924|ref|YP_002003062.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945] gi|239997927|ref|ZP_04717851.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|240015095|ref|ZP_04722008.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI18] gi|240017544|ref|ZP_04724084.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA6140] gi|240081687|ref|ZP_04726230.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|240113965|ref|ZP_04728455.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|240116699|ref|ZP_04730761.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|240118921|ref|ZP_04732983.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|240122167|ref|ZP_04735129.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID24-1] gi|240124459|ref|ZP_04737415.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|240124672|ref|ZP_04737558.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|240129135|ref|ZP_04741796.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|254494720|ref|ZP_05107891.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291] gi|268593777|ref|ZP_06127944.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|268597784|ref|ZP_06131951.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|268600029|ref|ZP_06134196.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|268602367|ref|ZP_06136534.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|268604630|ref|ZP_06138797.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|268683088|ref|ZP_06149950.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|268683246|ref|ZP_06150108.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|268687518|ref|ZP_06154380.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|293398201|ref|ZP_06642406.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62] gi|75432357|sp|Q5F5S8|RL4_NEIG1 RecName: Full=50S ribosomal protein L4 gi|226730698|sp|B4RQX9|RL4_NEIG2 RecName: Full=50S ribosomal protein L4 gi|59719054|gb|AAW90459.1| putative 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090] gi|193935214|gb|ACF31038.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945] gi|226513760|gb|EEH63105.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291] gi|268547166|gb|EEZ42584.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02] gi|268551572|gb|EEZ46591.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19] gi|268584160|gb|EEZ48836.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11] gi|268586498|gb|EEZ51174.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18] gi|268588761|gb|EEZ53437.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1] gi|268623372|gb|EEZ55772.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332] gi|268623530|gb|EEZ55930.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679] gi|268627802|gb|EEZ60202.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035] gi|291611464|gb|EFF40534.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62] gi|317165377|gb|ADV08918.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae TCDC-NG08107] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L ++ KTK + + L L L + +LD N LA+RN+PN+ +L Q Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFVT-KRLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|24371830|ref|NP_715872.1| 50S ribosomal protein L4 [Shewanella oneidensis MR-1] gi|117918658|ref|YP_867850.1| 50S ribosomal protein L4 [Shewanella sp. ANA-3] gi|46577265|sp|Q8EK67|RL4_SHEON RecName: Full=50S ribosomal protein L4 gi|166199865|sp|A0KRM5|RL4_SHESA RecName: Full=50S ribosomal protein L4 gi|24345643|gb|AAN53317.1|AE015473_4 ribosomal protein L4 [Shewanella oneidensis MR-1] gi|117610990|gb|ABK46444.1| LSU ribosomal protein L4P [Shewanella sp. ANA-3] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQSA----LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +RGGG F + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGGVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + +A++L + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLVVVESFSVEAPKTKELKAKLKAMNLEDVLIVT-SEVDENLFLAARNLYKVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ + ++++ A++ +E+ Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200 >gi|225024791|ref|ZP_03713983.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC 23834] gi|224942498|gb|EEG23707.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC 23834] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G ++ S+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLAASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRTFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L KTK + + L + L + QLD N L++RN+PN+ +L Q Sbjct: 121 ERLFVIEELSVATPKTKAFAEQVKNLGMEQVLFVT-NQLDENVYLSSRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ Y +LR K+V++K A+ LE+++ Sbjct: 180 IDPYSLLRYKKVVVTKEAVAQLEEQW 205 >gi|330432123|gb|AEC17182.1| 50S ribosomal protein L4 [Gallibacterium anatis UMN179] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL ++ ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVTKDAQ----SALTVSETTFGREFNEALVHQVVVAYAAGARQGSRAQKSRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 57 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L +ALII +D N LAARN+ +++ VQGI Sbjct: 117 RLVVVEKFEVEAPKTKVLVQKLKQMALDDALIIT-ANVDENLYLAARNLYKVDVRDVQGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFEKVVMTVDAVKQIEEML 200 >gi|330812074|ref|YP_004356536.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380182|gb|AEA71532.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 200 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V+ G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ A+R L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|113968545|ref|YP_732338.1| 50S ribosomal protein L4 [Shewanella sp. MR-4] gi|114045708|ref|YP_736258.1| 50S ribosomal protein L4 [Shewanella sp. MR-7] gi|123030070|sp|Q0HNT6|RL4_SHESM RecName: Full=50S ribosomal protein L4 gi|123131840|sp|Q0I0A4|RL4_SHESR RecName: Full=50S ribosomal protein L4 gi|113883229|gb|ABI37281.1| LSU ribosomal protein L4P [Shewanella sp. MR-4] gi|113887150|gb|ABI41201.1| LSU ribosomal protein L4P [Shewanella sp. MR-7] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQSA----LEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +RGGG F + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGGVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + +A++L + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLVVVESFSVEAPKTKELKAKLKAMNLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ + ++++ A++ +E+ Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200 >gi|163752595|ref|ZP_02159774.1| 50S ribosomal protein L4 [Shewanella benthica KT99] gi|161327507|gb|EDP98714.1| 50S ribosomal protein L4 [Shewanella benthica KT99] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + A+DL + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVESFTVEAPKTKELKAKLAAMDLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200 >gi|311748513|ref|ZP_07722298.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1] gi|126577029|gb|EAZ81277.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1] Length = 209 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N GED G +S+SE+IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MELAVINHKGEDTGRKVSLSEEIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERNEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + ALS K Sbjct: 61 TKKIKKQKGTGSARAGSIKSPIFRGGGRVFGPSPRNYSFKLNKKLKQLARKSALSYKVKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V++NL + KTK + L L ++ + ++N L++RN+P ++ V Sbjct: 121 NSLSVLENLSFEAPKTKSYLALLNGLSLADKKTLVVIPEENKNVYLSSRNLPKSKVVTVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N Y +L LV+ + ++ LE Sbjct: 181 DVNTYQVLNADHLVICEGSVSMLE 204 >gi|227502655|ref|ZP_03932704.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725] gi|227076385|gb|EEI14348.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725] Length = 217 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 5 KLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 125 IHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGRE-DINARRSANNLPNVQILDAGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ R Sbjct: 184 LNTYDVLYSDDVVFSVEALHTFITR 208 >gi|297717844|gb|ADI50065.1| LSU ribosomal protein L4p [Candidatus Odyssella thessalonicensis L13] Length = 206 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V N++ + G I ++ +IF L+P+ IL+RV+ WQ ++R G K+K +V + Sbjct: 1 MKIDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH SK QFRGG FGPV ++LPKKVR L L+ ALS K + Sbjct: 61 RKIYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 +++V+D+ KTK L+ AL NAL+ID D AA N+ ++LP G Sbjct: 121 ELIVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLPHNG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDI+R KL+++K AI+ALE+R Sbjct: 181 ANVYDIMRKEKLIVTKEAIKALEERL 206 >gi|29348135|ref|NP_811638.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482] gi|253569591|ref|ZP_04847001.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6] gi|298386182|ref|ZP_06995739.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14] gi|46576805|sp|Q8A477|RL4_BACTN RecName: Full=50S ribosomal protein L4 gi|29340038|gb|AAO77832.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482] gi|251841610|gb|EES69691.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6] gi|298261410|gb|EFI04277.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14] Length = 208 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 116/203 (57%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ V + KTK V + L +S L++ + ++N L+ARNI N+ V Sbjct: 121 NALIVVEDFVFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|225020387|ref|ZP_03709579.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii ATCC 33806] gi|305679737|ref|ZP_07402547.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266] gi|224946776|gb|EEG27985.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii ATCC 33806] gi|305660357|gb|EFM49854.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ G G + + +IF + +L +V+ Q +R G +K R EV G Sbjct: 5 TLDVQTAAGSTAGQVELPAEIFDREVSISLLHQVVNAQLAARRQGTHSTKTRGEVRGGGK 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG + GP P PKK+ AL ALSD+ Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRNYSQRTPKKMIKAALYGALSDRARHAR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+D LV+ ++ TK + L ++ + D +L+ARN+P + + + Sbjct: 125 IHVVDELVAGQKPSTKSALAFLSRLTDRKKILFVVGRDDVTSRLSARNLPGVTIRYQDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V S A+ A R Sbjct: 185 NTYDVLYSDDVVFSVEALNAFIAR 208 >gi|306835220|ref|ZP_07468254.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens ATCC 49726] gi|304568900|gb|EFM44431.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens ATCC 49726] Length = 217 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G+ G + + +IF + ++ +V+ Q R G +K R +V G Sbjct: 5 KLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+ AL ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI+ LV ++ TK +L + N L++ G + D N + +A N+PN+ +L Sbjct: 125 IHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGRE-DINARRSANNLPNVQILDAGQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ R Sbjct: 184 LNTYDVLYSDDVVFSVEALHTFITR 208 >gi|256821663|ref|YP_003145626.1| 50S ribosomal protein L4/L1e [Kangiella koreensis DSM 16069] gi|256795202|gb|ACV25858.1| ribosomal protein L4/L1e [Kangiella koreensis DSM 16069] Length = 200 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +ELS+ + G I VSE F + + ++ +V+ R G K RS V+ G Sbjct: 1 MELSLTS-----GGAIKVSEVAFGREFNESLVHQVVVAYLAAARAGTRAQKNRSAVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A++ LS+ Sbjct: 56 KKPWRQKGTGRARAGTIRSPLWRKGGVTFAAQPQDYTQKVNRKMYRGAIQSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK L + + LD+ ALI+ +D N LA+RN+ +++ V + Sbjct: 116 RLIVVEDFSVSAPKTKELAAKLKELDVKEALIVTDS-VDENLFLASRNLYKVDVRDVNAL 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ AI+ +E+ Sbjct: 175 DPVSLIGFDKVIMTVPAIKKVEEML 199 >gi|167626038|ref|YP_001676332.1| 50S ribosomal protein L4 [Shewanella halifaxensis HAW-EB4] gi|189042884|sp|B0TM11|RL4_SHEHH RecName: Full=50S ribosomal protein L4 gi|167356060|gb|ABZ78673.1| ribosomal protein L4/L1e [Shewanella halifaxensis HAW-EB4] Length = 201 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ KTK L + A+ L + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLIVVESFGVDAPKTKELKAKLDAMQLQDVLIVT-PEVDENLFLAARNLYKVDVRDVAGV 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ AI+ +E+ Sbjct: 176 DPVSLIAFDKVLVTAEAIKQIEEML 200 >gi|170077684|ref|YP_001734322.1| 50S ribosomal protein L4 [Synechococcus sp. PCC 7002] gi|169885353|gb|ACA99066.1| ribosomal protein L4 [Synechococcus sp. PCC 7002] Length = 210 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +V+N GE+ G ++ + + I+ R L Q R G S +K R+EV Sbjct: 1 MVNCAVKNWQGEEVGQANLDFKVAKEENAAHIVHRALVRQLNNARQGTSSTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S ++GGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWKGGGVIFGPKPKEYNLKMNRKERRLALRTAFHS--RN 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N KTK LV +++ +++ ++ N L+ARNI ++ ++ Sbjct: 119 EDLIVVENFAEQFAAPKTKELVNAMTRWGVASGEKVLLVLAEMTDNVYLSARNIASVKMV 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+N++DIL K+V++ A+ +++ + Sbjct: 179 PADGLNIFDILNAGKIVVTSEALAKIQEVY 208 >gi|15676070|ref|NP_273201.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58] gi|121634017|ref|YP_974262.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18] gi|161870914|ref|YP_001600094.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442] gi|218767167|ref|YP_002341679.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491] gi|254805813|ref|YP_003084034.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14] gi|304388944|ref|ZP_07370991.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC 13091] gi|46577147|sp|P61056|RL4_NEIMA RecName: Full=50S ribosomal protein L4 gi|46577148|sp|P61057|RL4_NEIMB RecName: Full=50S ribosomal protein L4 gi|166234693|sp|A1KRH4|RL4_NEIMF RecName: Full=50S ribosomal protein L4 gi|189029510|sp|A9M3W5|RL4_NEIM0 RecName: Full=50S ribosomal protein L4 gi|7225361|gb|AAF40601.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58] gi|120865723|emb|CAM09452.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18] gi|121051175|emb|CAM07446.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491] gi|161596467|gb|ABX74127.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442] gi|254669355|emb|CBA08442.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14] gi|254670742|emb|CBA06975.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha153] gi|304337078|gb|EFM03265.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC 13091] gi|316985673|gb|EFV64619.1| ribosomal L4/L1 family protein [Neisseria meningitidis H44/76] gi|319411373|emb|CBY91784.1| 50S ribosomal protein L4 [Neisseria meningitidis WUE 2594] gi|325129062|gb|EGC51911.1| ribosomal protein L4 [Neisseria meningitidis N1568] gi|325133055|gb|EGC55727.1| ribosomal protein L4 [Neisseria meningitidis M6190] gi|325135149|gb|EGC57775.1| ribosomal protein L4 [Neisseria meningitidis M13399] gi|325139033|gb|EGC61579.1| ribosomal protein L4 [Neisseria meningitidis ES14902] gi|325141157|gb|EGC63657.1| ribosomal protein L4 [Neisseria meningitidis CU385] gi|325143233|gb|EGC65572.1| ribosomal protein L4 [Neisseria meningitidis 961-5945] gi|325145340|gb|EGC67617.1| ribosomal protein L4 [Neisseria meningitidis M01-240013] gi|325197430|gb|ADY92886.1| ribosomal protein L4 [Neisseria meningitidis G2136] gi|325199356|gb|ADY94811.1| ribosomal protein L4 [Neisseria meningitidis H44/76] gi|325203263|gb|ADY98716.1| ribosomal protein L4 [Neisseria meningitidis M01-240355] gi|325205236|gb|ADZ00689.1| ribosomal protein L4 [Neisseria meningitidis M04-240196] Length = 206 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I+ L ++ KTK + + L L L + QLD N LA+RN+PN+ +L Q Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|68536922|ref|YP_251627.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411] gi|109893588|sp|Q4JT48|RL4_CORJK RecName: Full=50S ribosomal protein L4 gi|68264521|emb|CAI38009.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411] Length = 217 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG+ G + + IF + ++ +V+ Q KR G +K R V+ G Sbjct: 5 KLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGMVSGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHDR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V++ LV + TK L ++++ + D + N+P ++ L + Sbjct: 125 IHVVEELVPGQTPSTKAARAFIERLTDRKSVLVVLTREDVTAWKSVNNLPQVHTLVNDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205 >gi|186684509|ref|YP_001867705.1| 50S ribosomal protein L4 [Nostoc punctiforme PCC 73102] gi|226730699|sp|B2ITQ4|RL4_NOSP7 RecName: Full=50S ribosomal protein L4 gi|186466961|gb|ACC82762.1| ribosomal protein L4/L1e [Nostoc punctiforme PCC 73102] Length = 212 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 8/212 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE G + + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESVVKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRLALRTAFVGRI-- 118 Query: 121 NDIMVIDNLVSK--ECKTKYLVTRFRALDL---SNALIIDGCQLD-RNFQLAARNIPNIN 174 +D++V++ ++ KTK LV + S AL+I D N L+ARNI N+ Sbjct: 119 DDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLK 178 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L+ +NV+D+L K+V++ SA+E +++ + Sbjct: 179 LIAANQLNVFDLLHADKIVVTASALEKIQEVY 210 >gi|228472296|ref|ZP_04057062.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC 33624] gi|228276499|gb|EEK15223.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC 33624] Length = 209 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++SE +F ++P + ++ +R G KSK R+EVA + Sbjct: 1 MEVAVVNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KKV+ LA R LS K Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLNKKVKRLARRSILSQKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KTK AL + + ++N L++RNIP++N + Sbjct: 121 GAIIVLEDFSLETPKTKDFTKILAALGIQDKKSLFVLADTNKNVYLSSRNIPSVNTVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N YDI +VL +S++E ++ Sbjct: 181 ELNTYDIANAKTVVLLESSVEVIQSNL 207 >gi|319443064|ref|ZP_07992220.1| 50S ribosomal protein L4 [Corynebacterium variabile DSM 44702] Length = 216 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L+V DG G + + IF ++P ++ +V+ Q KR G +K R +V G Sbjct: 5 TLNVHTADGSTNGTVELPASIFDVEPSVPLMHQVVVAQLAAKRQGTHATKTRGDVRGGGK 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S GGG GP P PKK+++ ALR AL+D+ + Sbjct: 65 KPFRQKGTGRARQGSTRAPHMTGGGTVHGPQPRDYDQRTPKKMKAAALRGALTDRVRNER 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +++ LV+ + TK + L +++ + D + N+P ++ L + Sbjct: 125 IHLVEELVAGQTPSTKSARSFLGRLTDRKTVLVVLGREDVTAWKSVNNLPAVHALSFDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V S A+ A ++ Sbjct: 185 NTYDVLNADDVVFSVEALNAFIEQ 208 >gi|110833259|ref|YP_692118.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2] gi|123050733|sp|Q0VSK2|RL4_ALCBS RecName: Full=50S ribosomal protein L4 gi|110646370|emb|CAL15846.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2] Length = 200 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G ++VSE F + ++ +V+ R G K RS+V+ G K + Q Sbjct: 2 NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +RGGGK F VP + +K+ AL+ +S+ ++V+D Sbjct: 62 KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK + + + ++L++ LI+ +D N +A+RN+P +++ QG++ ++ Sbjct: 122 EFTVDSPKTKAVAAKLKGMELTSVLIVTD-NVDENLFMASRNLPKVDVRDSQGVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ A++ LE+ Sbjct: 181 AFEKVLITVPALKKLEEAL 199 >gi|229587008|ref|YP_002845509.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5] gi|259491567|sp|C3PPA6|RL4_RICAE RecName: Full=50S ribosomal protein L4 gi|228022058|gb|ACP53766.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5] Length = 207 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 1 MKTKIFSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|154494381|ref|ZP_02033701.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC 43184] gi|154085825|gb|EDN84870.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC 43184] Length = 209 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK VT + L +++ L++ + + L+ARN+ N++ Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LVL++S++ +E F Sbjct: 181 ELNTYSVLNAVNLVLTESSVAVIEKLF 207 >gi|57234685|ref|YP_181219.1| 50S ribosomal protein L4 [Dehalococcoides ethenogenes 195] gi|109893590|sp|Q3Z980|RL4_DEHE1 RecName: Full=50S ribosomal protein L4 gi|57225133|gb|AAW40190.1| ribosomal protein L4 [Dehalococcoides ethenogenes 195] Length = 210 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 107/203 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE IS+SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ V+D L E KT+ + AL + + +I D NF +ARNIP + P + Sbjct: 121 ELKVVDQLSFDEPKTRDMAKILAALQVMSPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+LR +LV+++ A+ +E+ Sbjct: 181 NISDMLRNKQLVMTEEAVRQVEE 203 >gi|239618264|ref|YP_002941586.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1] gi|259491563|sp|C5CGR3|RL4_KOSOT RecName: Full=50S ribosomal protein L4 gi|239507095|gb|ACR80582.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N+ G G + + + IF ++P ++ R + Q +R G +K+K RSEV+ Sbjct: 1 MAQTDVLNVTGNKIGTVELKDSIFNIEPNYDVMFRYVDMQLANRRAGTAKAKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG GP P L KK++ LAL+ ALS +F Sbjct: 61 GRKPWPQKHTGRARTGSIRNPLWRHGGVIHGPKPKDWSKKLNKKMKKLALKSALSLRFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLD--RNFQLAARNIPNINL 175 +++V+D++ KTK + + L LS L I + D N +L+ RNIP + + Sbjct: 121 GNLVVVDDIKLDRPKTKQMREIVKNLGLSDAKKVLFILPWKRDEYENVKLSGRNIPGVKV 180 Query: 176 LPV--------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 + G+NV+DIL K+V + + +E+ Sbjct: 181 IIADNPGNLVNGRSSNIDGLNVFDILNHEKIVFTVDLVRKIEEVL 225 >gi|73748317|ref|YP_307556.1| 50S ribosomal protein L4 [Dehalococcoides sp. CBDB1] gi|147669097|ref|YP_001213915.1| 50S ribosomal protein L4 [Dehalococcoides sp. BAV1] gi|289432365|ref|YP_003462238.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT] gi|109893591|sp|Q3ZZM3|RL4_DEHSC RecName: Full=50S ribosomal protein L4 gi|189029500|sp|A5FRZ0|RL4_DEHSB RecName: Full=50S ribosomal protein L4 gi|73660033|emb|CAI82640.1| ribosomal protein L4 [Dehalococcoides sp. CBDB1] gi|146270045|gb|ABQ17037.1| LSU ribosomal protein L4P [Dehalococcoides sp. BAV1] gi|288946085|gb|ADC73782.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT] Length = 210 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 107/203 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N GE I++SED+F + + ++ + Q R G +K R EV + Sbjct: 1 MEIPVYNASGEIVKNINISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG AR + R GG AFGP P LPKK+R A+R LS K S Sbjct: 61 RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ VID L E KT+ + AL + + +I D NF +ARNIP + P + Sbjct: 121 ELKVIDQLSFDEPKTRDMAKILTALQVISPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N+ D+L+ +LV+++ A+ +E+ Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203 >gi|258406184|ref|YP_003198926.1| 50S ribosomal protein L4 [Desulfohalobium retbaense DSM 5692] gi|257798411|gb|ACV69348.1| ribosomal protein L4/L1e [Desulfohalobium retbaense DSM 5692] Length = 206 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + G +++S ++F + + IL +V+R Q KR G K RS + Sbjct: 1 MPVVQIVDKSNQAVGEVTLSSEVFEREVRAEILHQVVRSQLAAKRRGTVGVKTRSLIRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + GG GP + KKV+ LAL+ A+S + Sbjct: 61 GRKPWRQKGTGRARAGTVRSPIWTGGAIVHGPQARDYDIKVNKKVKRLALKMAMSSRLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++V+D++ +E KTK LDL LI+ + D +L+ARNIP + ++ Sbjct: 121 DNLVVVDSVTPEEVKTKSFRKIQEQLDLKKCLIVT-AEKDNTLELSARNIPGVTVMTWDN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N +D+L +LVL A+E +E++ Sbjct: 180 LNTFDVLNHDQLVLEAKAVEKIEEKL 205 >gi|1037104|gb|AAB41511.1| ribosomal protein L4 [Haemophilus influenzae] gi|1588630|prf||2209238A ribosomal protein L4 Length = 200 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGT RAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTARARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + L + +ALII LD N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDALIIT-ASLDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199 >gi|260579266|ref|ZP_05847150.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734] gi|258602618|gb|EEW15911.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734] Length = 217 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG+ G + + IF + ++ +V+ Q KR G +K R +V+ G Sbjct: 5 KLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGQVSGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG GP P PKK+++ ALR AL+D+ N Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHNR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V++ LV + TK T L ++++ + D + N+P ++ L + Sbjct: 125 IHVVEELVPGQTPSTKAARTFIERLTDRKSVLVVLTREDVTAWKSVNNLPQVHTLVNDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ A Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205 >gi|153805958|ref|ZP_01958626.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185] gi|149130635|gb|EDM21841.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185] Length = 208 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 NAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|23336502|ref|ZP_00121716.1| COG0088: Ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|23466131|ref|NP_696734.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705] gi|189440570|ref|YP_001955651.1| 50S ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|213693087|ref|YP_002323673.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546477|ref|ZP_03976526.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621011|ref|ZP_04664042.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454869|ref|YP_003662013.1| 50S ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum JDM301] gi|312133875|ref|YP_004001214.1| rpld [Bifidobacterium longum subsp. longum BBMN68] gi|317483449|ref|ZP_07942439.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689928|ref|YP_004209662.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis 157F] gi|322691869|ref|YP_004221439.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM 1217] gi|46576825|sp|Q8G416|RL4_BIFLO RecName: Full=50S ribosomal protein L4 gi|226730621|sp|B3DQ14|RL4_BIFLD RecName: Full=50S ribosomal protein L4 gi|254803717|sp|B7GND9|RL4_BIFLI RecName: Full=50S ribosomal protein L4 gi|23326867|gb|AAN25370.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705] gi|189429005|gb|ACD99153.1| Ribosomal protein L4 [Bifidobacterium longum DJO10A] gi|213524548|gb|ACJ53295.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227213026|gb|EEI80905.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516112|gb|EEQ55979.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516468|emb|CBK70084.1| LSU ribosomal protein L4P [Bifidobacterium longum subsp. longum F8] gi|296184301|gb|ADH01183.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum JDM301] gi|311773168|gb|ADQ02656.1| RplD [Bifidobacterium longum subsp. longum BBMN68] gi|316915135|gb|EFV36567.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456725|dbj|BAJ67347.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM 1217] gi|320459265|dbj|BAJ69886.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461264|dbj|BAJ71884.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis 157F] Length = 218 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + E +F + + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDAKGQATGTVEAPEALFGVSAEDVQAHIPLIHQVVTAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ALSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V++ E TK V + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVAVVE-FGITEPSTKAAVAALAPITADKFTTVVFTRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V +K A EA Sbjct: 183 FVDQLNTYDVITSQYVVFTKEAFEAF 208 >gi|170718247|ref|YP_001785267.1| 50S ribosomal protein L4 [Haemophilus somnus 2336] gi|189029507|sp|B0UX14|RL4_HAES2 RecName: Full=50S ribosomal protein L4 gi|168826376|gb|ACA31747.1| ribosomal protein L4/L1e [Haemophilus somnus 2336] Length = 200 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R GG F P + KK+ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK LV + + + L++ALII LD N LAARN+ +++ VQ I Sbjct: 116 RLVVVEKFEIDVPKTKVLVQKLKDMALTDALIIT-ASLDENLFLAARNLYKVDVRDVQAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ F Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEMF 199 >gi|313673466|ref|YP_004051577.1| ribosomal protein l4/l1e [Calditerrivibrio nitroreducens DSM 19672] gi|312940222|gb|ADR19414.1| ribosomal protein L4/L1e [Calditerrivibrio nitroreducens DSM 19672] Length = 207 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N E G + +S++I + ++ V++ Q +R G + R+ + Sbjct: 1 MALVDVLNTKNEKVGQVEISDNIMTYPVKPWLIHEVVKMQLACRRAGTHATLNRALIEGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P +++PKK ALR A+ KF Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYSYSMPKKKVKNALRSAVKAKFDD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++DN V + KTK A+ LS ++I ++D +A RN+P ++ L V+G Sbjct: 121 AAVKIVDNFVVESGKTKDAQKLLDAMGLSKRVLIVYSEIDDKTFMAFRNLPKVDFLNVKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++ +++ K A+ + + Sbjct: 181 LNVYDVVNADNIIIVKDALSYIMEVL 206 >gi|38233086|ref|NP_938853.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae NCTC 13129] gi|46577152|sp|P61062|RL4_CORDI RecName: Full=50S ribosomal protein L4 gi|38199345|emb|CAE48978.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae] Length = 217 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +G+ G + + +IF + +L +V+ Q KR G +K R+EV+ G Sbjct: 5 KLDVLTAEGKTDGQVELPAEIFDREASVALLHQVVNAQLAAKRQGTHSAKTRAEVSGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG + GP P PKK+ AL AL+D+ Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALFGALTDRARHER 124 Query: 123 IMVIDNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI LV+ + + F R D N L++ G + D Q +ARN+P +++L Sbjct: 125 IHVISELVAGQTPSTKSARSFIERITDRRNVLLVVGRE-DVTAQKSARNLPGVHILFADQ 183 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N YD+L +V S A+ +R Sbjct: 184 LNTYDVLYSDDVVFSVEALNTFINR 208 >gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens] gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens] Length = 220 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 + IL R + WQ ++R G +K+K R EV G K + QKG+GRAR S FRGGG Sbjct: 2 RIDILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGGT 61 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148 GP P P+KVRS+A+R ALS KF D+ ++D+ + KT+ L + Sbjct: 62 VHGPRPRSYDFTFPRKVRSMAIRVALSVKFAQGDLYIVDSFGLETHKTQNLKDLLDQRNW 121 Query: 149 SNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +AL++DG +D N +LAARNI ++LP +NV+ +L+ LVLS A++ L++R Sbjct: 122 YSALLVDGNTYVDENLRLAARNIQKCDVLPSYALNVHMMLKRHALVLSLPALKILQERL 180 >gi|212695304|ref|ZP_03303432.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855] gi|237711674|ref|ZP_04542155.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA] gi|237725884|ref|ZP_04556365.1| 50S ribosomal protein L4 [Bacteroides sp. D4] gi|265753094|ref|ZP_06088663.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA] gi|212662214|gb|EEB22788.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855] gi|229435692|gb|EEO45769.1| 50S ribosomal protein L4 [Bacteroides dorei 5_1_36/D4] gi|229454369|gb|EEO60090.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA] gi|263236280|gb|EEZ21775.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA] Length = 208 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+++++ + KTK V+ L + L++ + ++N L+ARNI N+ Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKITDKKLLLVLPEANKNVYLSARNIERANVAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y++L LV+++++++A+E+ Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIENIL 207 >gi|120553653|ref|YP_958004.1| ribosomal protein L4/L1e [Marinobacter aquaeolei VT8] gi|166234682|sp|A1TYJ8|RL4_MARAV RecName: Full=50S ribosomal protein L4 gi|120323502|gb|ABM17817.1| LSU ribosomal protein L4P [Marinobacter aquaeolei VT8] Length = 201 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G KG ISVS+ FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MELTIT---GSGKG-ISVSDAAFAKDFNEALVHQVVTAYMAAGRQGTKAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R S+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPRDFEQKVNRKMYRAAMRSIFSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK + L +SNALI+ +++N LA+RN+P++++ V G+ Sbjct: 117 RLVVVDDMNVDTPKTKAFTAKLSDLGVSNALIL-SENVEQNLHLASRNVPHVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLVAFEKVVVTVPALKKIEEML 200 >gi|257453270|ref|ZP_05618569.1| 50S ribosomal protein L4 [Fusobacterium sp. 3_1_5R] gi|257467135|ref|ZP_05631446.1| 50S ribosomal protein L4 [Fusobacterium gonidiaformans ATCC 25563] gi|315918266|ref|ZP_07914506.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563] gi|317059804|ref|ZP_07924289.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R] gi|313685480|gb|EFS22315.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R] gi|313692141|gb|EFS28976.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563] Length = 210 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V+E +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176 N I+V++ + KTK +V +D + L D N L+ARN+ N +L Sbjct: 121 NQIVVLEG-AVEAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209 >gi|150008983|ref|YP_001303726.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503] gi|255014814|ref|ZP_05286940.1| 50S ribosomal protein L4 [Bacteroides sp. 2_1_7] gi|256841016|ref|ZP_05546523.1| ribosomal protein L4/L1 [Parabacteroides sp. D13] gi|262383873|ref|ZP_06077009.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B] gi|298375784|ref|ZP_06985740.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19] gi|301312032|ref|ZP_07217954.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3] gi|166234697|sp|A6LEJ0|RL4_PARD8 RecName: Full=50S ribosomal protein L4 gi|149937407|gb|ABR44104.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503] gi|256736859|gb|EEU50186.1| ribosomal protein L4/L1 [Parabacteroides sp. D13] gi|262294771|gb|EEY82703.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B] gi|298266821|gb|EFI08478.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19] gi|300830134|gb|EFK60782.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3] Length = 209 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVFNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+SLA + ALS K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKSLARKSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK +T + L + L++ + + L+ARN+ +++ Sbjct: 121 NAIVVVEDFTMEAPKTKEFITIAKNLKVADKKLLMVLPEKNNLVYLSARNLEKASVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N Y +L LVL++S++ +E FK Sbjct: 181 ELNTYAVLNAVNLVLTESSVAVVEQNFK 208 >gi|292492422|ref|YP_003527861.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4] gi|291581017|gb|ADE15474.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4] Length = 206 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V++L + + G+I VS+ +FA + ++ +V+ + R G K RSEV Sbjct: 1 MELAVQSLAENAETGMIQVSDVVFAQYFNEPLIHQVVTAYLAKDRAGTRAQKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGGK F P + KK+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPRDYSQKVNKKMYRAAMRSILSELARQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V++ +V E KTK LV A D + L++ + + N +L+ARNIP + + Sbjct: 121 DRLRVVNEIVFPEPKTKELVKLLSAYDWRSVLVVV-AEDNPNLELSARNIPAVAVGNASN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ D++R ++ + +AI E+ Sbjct: 180 ISPVDLIRFDGVLATDAAIRRFEESL 205 >gi|157828859|ref|YP_001495101.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933586|ref|YP_001650375.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Iowa] gi|166199858|sp|A8GT68|RL4_RICRS RecName: Full=50S ribosomal protein L4 gi|189042881|sp|B0BUQ9|RL4_RICRO RecName: Full=50S ribosomal protein L4 gi|157801340|gb|ABV76593.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908673|gb|ABY72969.1| LSU ribosomal protein L1E (= L4P) [Rickettsia rickettsii str. Iowa] Length = 207 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVVVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|295085427|emb|CBK66950.1| LSU ribosomal protein L4P [Bacteroides xylanisolvens XB1A] Length = 208 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|22297626|ref|NP_680873.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1] gi|46577259|sp|Q8DMN0|RL4_THEEB RecName: Full=50S ribosomal protein L4 gi|22293803|dbj|BAC07635.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1] Length = 210 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V++ G D G ++ + I+ R L Q R G +K R+EV Sbjct: 1 MVACVVKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRV-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+ + KTK LVT + + +++ + L+ARN+P + LL Sbjct: 119 EDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L ++V + AI +++ + Sbjct: 179 RADQLNVFDLLYADRIVATTGAIAKIQEVY 208 >gi|170780734|ref|YP_001709066.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. sepedonicus] gi|169155302|emb|CAQ00405.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. sepedonicus] Length = 218 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 1/203 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V + G G + + IF ++ ++ +V+ Q R G K+KGR EV+ G Sbjct: 6 QLDVLDATGAVTGSVDLPASIFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ Sbjct: 66 KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++L + + TK +V + S ++I + D + RNIP +++L + Sbjct: 126 LHVIESLSAGDVPSTKTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N YD+L +V +K A +A + Sbjct: 186 NAYDVLVSDDIVFTKGAFDAFVE 208 >gi|2113867|emb|CAA73673.1| rplD [Mycobacterium bovis BCG] Length = 223 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V+ G+ G I + ++F + ++ +V+ Q R G +K R EV+ G Sbjct: 10 KIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGR 69 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 70 KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I I LV + TK +L +++ + D + + RN+P +++L + Sbjct: 130 IHAITELVEGQNPSTKSARAFLVSLTERKQVLVVIGRSDEGRRESVRNLPGVHILAPDQL 189 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S A+ A Sbjct: 190 NTYDVLRADDVVFSVEALNA 209 >gi|298483065|ref|ZP_07001246.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22] gi|298270809|gb|EFI12389.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22] Length = 208 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G +S++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVSLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|210631083|ref|ZP_03296739.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279] gi|210160171|gb|EEA91142.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279] Length = 208 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N +G+ +++ ++ ++P ++ +++ Q R G +KGRSEV+ Sbjct: 1 MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P V + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D+ ++ TK V +AL L L I + D N L+ RNIP ++ Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVREDDINAYLSFRNIPKTWIITPA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 N YD++ L++ + Sbjct: 181 EANTYDLINNGALIMPADVAAHFGEVL 207 >gi|150003386|ref|YP_001298130.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482] gi|254881323|ref|ZP_05254033.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA] gi|294777822|ref|ZP_06743266.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510] gi|319640325|ref|ZP_07995050.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A] gi|166234635|sp|A6KYJ4|RL4_BACV8 RecName: Full=50S ribosomal protein L4 gi|149931810|gb|ABR38508.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482] gi|254834116|gb|EET14425.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA] gi|294448276|gb|EFG16832.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510] gi|317388100|gb|EFV68954.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A] Length = 208 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+++++ + KTK V+ L + L++ + ++N L+ARNI N+ Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKIADKKLLLVLPEANKNVYLSARNIERANVAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y++L LV+++++++A+E+ Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIENIL 207 >gi|157960015|ref|YP_001500049.1| 50S ribosomal protein L4 [Shewanella pealeana ATCC 700345] gi|189042885|sp|A8GYX7|RL4_SHEPA RecName: Full=50S ribosomal protein L4 gi|157845015|gb|ABV85514.1| ribosomal protein L4/L1e [Shewanella pealeana ATCC 700345] Length = 201 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + + L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVESFGVEAPKTKELKAKLNEMQLEDVLIVT-PEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ AI+ +E+ Sbjct: 176 DPVSLIAFNKVLVTAEAIKQIEEML 200 >gi|158520726|ref|YP_001528596.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3] gi|226730653|sp|A8ZV58|RL4_DESOH RecName: Full=50S ribosomal protein L4 gi|158509552|gb|ABW66519.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3] Length = 205 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N++GE + + IF ++ + +L V++ Q R+R G + +KGRS+VA + Sbjct: 1 MAVVDIKNMNGETVSQAELPDSIFDVEVKSSVLHEVVKMQLARRRSGTASTKGRSDVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 +K++ QKGTGRAR +GGG FGP P +++PKKVR LAL+ AL+ K Sbjct: 61 RAKLFRQKGTGRARRGDVKSPLLKGGGVVFGPHPRSFDYSVPKKVRKLALKMALTSKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D KTK V AL +NAL+I + +ARN+P + +L +G Sbjct: 121 NTLTVVDQFRFDRIKTKDFVGAINALGAANALVI--SDGSETLEKSARNVPKVKVLKCEG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ LVL ++AI+ +E R Sbjct: 179 LNVYDILKYKNLVLPEAAIKMIEGRL 204 >gi|162449113|ref|YP_001611480.1| hypothetical protein sce0843 [Sorangium cellulosum 'So ce 56'] gi|161159695|emb|CAN91000.1| rplD [Sorangium cellulosum 'So ce 56'] Length = 207 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 107/204 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V NL E G + +S+++F + ++ + V++ Q +R G +K RS VA + Sbjct: 1 MKVTVYNLKREQVGELDLSDEVFGTEVKEHLFYEVVKAQLASRRSGTKATKERSAVAGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRAR S GGG A P + P+KVR AL+ ALS Sbjct: 61 KKLYRQKGTGRARQGSIRAPHHAGGGMAHALEPKDWSYRPPRKVRIGALKSALSLFAKEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L E KTK + L ++ + + RN+ N LP +G+ Sbjct: 121 RLIVLDSLEVSEIKTKAIAATLTTLQADRKSLVVDTAGNDKLVKSLRNLENHQYLPPEGV 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 NVYD+LR L++S+ A +ALE R Sbjct: 181 NVYDLLRHDHLIVSRDAAKALEAR 204 >gi|15892928|ref|NP_360642.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7] gi|34581370|ref|ZP_00142850.1| 50S ribosomal protein L4 [Rickettsia sibirica 246] gi|46577283|sp|Q92GW7|RL4_RICCN RecName: Full=50S ribosomal protein L4 gi|15620120|gb|AAL03543.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7] gi|28262755|gb|EAA26259.1| 50S ribosomal protein L4 [Rickettsia sibirica 246] Length = 207 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|294142932|ref|YP_003558910.1| 50S ribosomal protein L4 [Shewanella violacea DSS12] gi|293329401|dbj|BAJ04132.1| ribosomal protein L4 [Shewanella violacea DSS12] Length = 201 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + ++L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVESFTVEAPKTKELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200 >gi|198274002|ref|ZP_03206534.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135] gi|198273080|gb|EDY97349.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135] Length = 209 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF + P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVLNIKGEDTGKKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKVLARKSALAYKAQT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ + KTK V L + L++ + ++N L+ARN+ NL Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++SA++A+E+ Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEETL 207 >gi|149376684|ref|ZP_01894443.1| Ribosomal protein L4 [Marinobacter algicola DG893] gi|149359057|gb|EDM47522.1| Ribosomal protein L4 [Marinobacter algicola DG893] Length = 201 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G KG ISVS+ FA + ++ +V+ R G K RSEVA G Sbjct: 1 MELTIT---GSGKG-ISVSDAAFAKDFNESLVHQVVTAYMSGARQGTRAQKTRSEVAGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R S+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPLWRSGGVTFAAKPQSFEQKVNRKMYRAAMRSIFSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ + KTK + + +SNALI+ +++N LA+RNIP++++ V G+ Sbjct: 117 RLVVVDDMNVETPKTKAFTAKLSDIGVSNALIL-SDNVEQNLHLASRNIPHVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLVAFDKVVVTVPALKKIEEML 200 >gi|54022701|ref|YP_116943.1| 50S ribosomal protein L4 [Nocardia farcinica IFM 10152] gi|81603036|sp|Q5Z1W2|RL4_NOCFA RecName: Full=50S ribosomal protein L4 gi|54014209|dbj|BAD55579.1| putative ribosomal protein L4 [Nocardia farcinica IFM 10152] Length = 230 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V+ G+ G + + +IF + ++ +V+ Q R G +K R EV+ G K Sbjct: 18 LPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKK 77 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+ AL ALSD+ ++ I Sbjct: 78 PYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARNDRI 137 Query: 124 MVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ LV+ + TK L ++ + D + N+ N+ + +N Sbjct: 138 HVVSELVAGQTPSTKTAKNFLAELSDRKKFLVVVGREDVTAWKSVANLQNVQPIAPDQLN 197 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V S A+ A Sbjct: 198 TYDVLNSDDVVFSVEALNAF 217 >gi|209528358|ref|ZP_03276809.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328] gi|209491211|gb|EDZ91615.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328] Length = 210 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +RN +GE+ G ++ + + I+ R L Q R G + +K RSEV Sbjct: 1 MVDCVIRNWEGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSRA-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 DI+V++ V KTK L +S +++ + N L+ RN+ I + Sbjct: 119 EDIVVVEEFVTQLPRPKTKDLTDALARWGVSPEAKVLLVLPEKQENVYLSGRNVAKIRIC 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V + +A+ +++ + Sbjct: 179 LADSLNVYDVLAADKIVTTANALAKIQEVY 208 >gi|15599458|ref|NP_252952.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1] gi|107103775|ref|ZP_01367693.1| hypothetical protein PaerPA_01004846 [Pseudomonas aeruginosa PACS2] gi|116052297|ref|YP_788857.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14] gi|152987454|ref|YP_001346224.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7] gi|254237125|ref|ZP_04930448.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719] gi|254242916|ref|ZP_04936238.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192] gi|296387181|ref|ZP_06876680.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAb1] gi|313111416|ref|ZP_07797221.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016] gi|46396659|sp|Q9HWD6|RL4_PSEAE RecName: Full=50S ribosomal protein L4 gi|122261446|sp|Q02T79|RL4_PSEAB RecName: Full=50S ribosomal protein L4 gi|166199845|sp|A6UZI9|RL4_PSEA7 RecName: Full=50S ribosomal protein L4 gi|9950479|gb|AAG07650.1|AE004841_28 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1] gi|115587518|gb|ABJ13533.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14] gi|126169056|gb|EAZ54567.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719] gi|126196294|gb|EAZ60357.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192] gi|150962612|gb|ABR84637.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7] gi|310883723|gb|EFQ42317.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016] Length = 200 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VSE F + + ++ + + R G K RSEV+ G K + Sbjct: 3 LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR L++ + ++V+ Sbjct: 61 QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + KTK LV + L L + LI+ +D N LAARN+ ++++ VQG + + Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDVLIVTDG-VDENLYLAARNLAHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199 >gi|291457203|ref|ZP_06596593.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM 20213] gi|291381038|gb|EFE88556.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM 20213] Length = 218 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + ++F + K ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDAKGQAAGTVEAPVELFGVSAEDVKAHIPLIHQVVTAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ALSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + I V+D E TK V + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRIAVVD-FGITEPSTKAAVAALSPITEDKFTTVVFTRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V +K A EA Sbjct: 183 FVDQLNTYDVITAQYVVFTKEAFEAF 208 >gi|218262296|ref|ZP_03476810.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii DSM 18315] gi|218223447|gb|EEC96097.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii DSM 18315] Length = 209 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G +++++ IF ++P + ++ +R G KSK RSEV+ + Sbjct: 1 MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K + Sbjct: 61 TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK VT + L +++ L++ + + L+ARN+ N++ Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L + LVL++S++ +E F Sbjct: 181 ELNTYTVLNAANLVLTESSVAVIEKLF 207 >gi|169630899|ref|YP_001704548.1| 50S ribosomal protein L4 [Mycobacterium abscessus ATCC 19977] gi|169242866|emb|CAM63894.1| 50S ribosomal protein L4 [Mycobacterium abscessus] Length = 213 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++V+ G+ G I + ++F +L +V+ Q R G +K R V+ G Sbjct: 1 MKIAVKAPGGKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 61 KKPYRQKGTGRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNG 120 Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I + LV+ +E TK + + L++ + D + RN+PN+++L Sbjct: 121 RIHAVTELVAGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD+L+ +V S A+ Sbjct: 181 LNTYDVLKADDVVFSVEALNGF 202 >gi|56551414|ref|YP_162253.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761061|ref|ZP_04759150.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752973|ref|YP_003225866.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81598314|sp|Q5NQ63|RL4_ZYMMO RecName: Full=50S ribosomal protein L4 gi|56542988|gb|AAV89142.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ZM4] gi|241374680|gb|EER64141.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552336|gb|ACV75282.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 207 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V++LD KG I +++ +F ++P+ IL RV+ WQ ++R ++ RS+VA +G Sbjct: 1 MKVEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA G + +L KKVR+L LR ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VI+ L + KTK L + ++L L++DG ++ NF A+ N+ +++LP G Sbjct: 121 TLVVIEALDVEA-KTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAVG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE R Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARL 205 >gi|218889410|ref|YP_002438274.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58] gi|226730709|sp|B7V645|RL4_PSEA8 RecName: Full=50S ribosomal protein L4 gi|218769633|emb|CAW25393.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58] Length = 200 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N+ G I VSE F + + ++ + + R G K RSEV+ G K + Sbjct: 3 LNVSGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR L++ + ++V+ Sbjct: 61 QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + KTK LV + L L + LI+ +D N LAARN+ ++++ VQG + + Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDVLIVTDG-VDENLYLAARNLAHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199 >gi|288917231|ref|ZP_06411600.1| ribosomal protein L4/L1e [Frankia sp. EUN1f] gi|288351422|gb|EFC85630.1| ribosomal protein L4/L1e [Frankia sp. EUN1f] Length = 247 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V G D G + + +F + ++ +V+ Q R G +K R EV G Sbjct: 22 TVPVHAPAGGDAGSVELPGAVFDVPLNVPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGR 81 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ ++ Sbjct: 82 KPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRNYDQRTPKKMKAAALRGALSDRARNDR 141 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ +LV+ TK +L + +++ + D L+ RN+ ++LL + Sbjct: 142 VHVVSSLVAGDAPSTKAAFKALTSLVDARRVLVVAQRSDEQTWLSLRNVAAVHLLDPGQL 201 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V ++ A+ A R Sbjct: 202 NTYDVLVSDDVVFTEGALAAFLAR 225 >gi|223944103|gb|ACN26135.1| unknown [Zea mays] Length = 197 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 113/188 (60%), Gaps = 1/188 (0%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y QKGTG+ARH + Sbjct: 3 LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTL 62 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 +QFRGG GP P L KKVR L L+ ALS + +++ ++L KTK Sbjct: 63 RGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKN 122 Query: 139 LVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 +V R +D S L++DG +D+ +LA +N+ +N+LP G+NVY IL+ LV++++ Sbjct: 123 IVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRA 182 Query: 198 AIEALEDR 205 AI + +R Sbjct: 183 AINRIVER 190 >gi|300728442|ref|ZP_07061804.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14] gi|299774361|gb|EFI70991.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14] Length = 209 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +++++ IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVNVLDIKGQETGRKVTLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYRFKLNKKVKVLARKSALTYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L + N ++ ++++N L+ARN+ N+ Sbjct: 121 NAIVVVEDFNFEAPKTKDFVNIAKNLKVDNKKALVVLPEVNKNVYLSARNLKKANVETAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN Y +L LV+S+S++E +E Sbjct: 181 SINAYKVLNADVLVISESSLETIESIL 207 >gi|127511093|ref|YP_001092290.1| 50S ribosomal protein L4 [Shewanella loihica PV-4] gi|166199863|sp|A3Q983|RL4_SHELP RecName: Full=50S ribosomal protein L4 gi|126636388|gb|ABO22031.1| LSU ribosomal protein L4P [Shewanella loihica PV-4] Length = 201 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG +F + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVSFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + + + L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKDMKLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 176 DPVSLIAFEKVLVTADAVKQIEEML 200 >gi|262197187|ref|YP_003268396.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365] gi|262080534|gb|ACY16503.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365] Length = 215 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 3/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L ++N GE G I + + IFA + + + V++WQ R+R G +K R EV + Sbjct: 1 MPKLDIKNTAGETVGDIDLDDAIFAEEVHEHLFWEVVKWQRARRRAGTHSTKRRGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K Y QKGTGRAR + + GGG FGP P +ALPKKVR ALR ALS + Sbjct: 61 NIKPYRQKGTGRARQGDRKAPHWVGGGSVFGPKPRSYDYALPKKVRKKALRSALSLRAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++V+D + KT+ +V+ AL N ++I + + RN+ L Sbjct: 121 QKLVVLDAFPVEGGKTRNVVSALAALGAAHTDNRVLIVDAGDNLDLIRGTRNLRGSKWLA 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +G+NVYDIL S LV++ + ++A+E Sbjct: 181 PEGLNVYDILDHSTLVMTSATVKAVE 206 >gi|293372117|ref|ZP_06618508.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC 3f] gi|292632909|gb|EFF51496.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC 3f] Length = 208 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGTNVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|295394347|ref|ZP_06804572.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972805|gb|EFG48655.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 223 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 1/203 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + + + G+ G + IF K ++ +V+ Q R G K+K RSEV G Sbjct: 6 TVDILDAKGKKAGSAELPASIFDQKTNVPLIHQVVVAQLAASRQGTHKAKTRSEVRGGGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTG AR S Q+ GGG GPVP PKK+++ ALR ALSD+ Sbjct: 66 KPYRQKGTGNARQGSIRAPQYAGGGIVHGPVPRDYSQRTPKKMKAAALRGALSDRARLGQ 125 Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ NL S TK AL +I + D L+ RN+P +++L + Sbjct: 126 VFVVKNLIDSDVPSTKAARQALEALSDRAHKLIVTERDDSITALSVRNLPTVHVLSFDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N YD+L +V +++A+ + + Sbjct: 186 NTYDVLMADDIVFTEAALNSFLE 208 >gi|111023097|ref|YP_706069.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1] gi|110822627|gb|ABG97911.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1] Length = 229 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ G+ G + + +IF +L +V+ Q R G +K R EV G Sbjct: 12 TLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGK 71 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 72 KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 131 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LV+ + TK T + +++ + D + +N+ ++ + + Sbjct: 132 IHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVGREDIAAWKSVQNLDGVHPIAPDQL 191 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ + Sbjct: 192 NTYDVLNSDDVVFSVEALNSF 212 >gi|212213249|ref|YP_002304185.1| 50S ribosomal protein L4 [Coxiella burnetii CbuG_Q212] gi|212218075|ref|YP_002304862.1| 50S ribosomal protein L4 [Coxiella burnetii CbuK_Q154] gi|215918922|ref|NP_819283.2| 50S ribosomal protein L4 [Coxiella burnetii RSA 493] gi|206583807|gb|AAO89797.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii RSA 493] gi|212011659|gb|ACJ19040.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuG_Q212] gi|212012337|gb|ACJ19717.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuK_Q154] Length = 206 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ Sbjct: 1 MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L E KT+ L + L+L N LII DRN LA+RN+ +++ Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 180 VDPVSLVAAENIVVTVDAVKRLEERL 205 >gi|158337811|ref|YP_001518987.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017] gi|189029488|sp|B0C1D4|RL4_ACAM1 RecName: Full=50S ribosomal protein L4 gi|158308052|gb|ABW29669.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017] Length = 210 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 106/211 (50%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VRN GED G + + + I+ R LR Q R G + SK RSEV Sbjct: 1 MVNCVVRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR A + + Sbjct: 61 GRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRLALRTAFASRA-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+++ KTK L+ + S L+I + D L+ARN+ + L Sbjct: 119 EDLVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHD-TIYLSARNVEKLKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NVYD+L ++V ++SAI +++ + Sbjct: 178 ILASNLNVYDLLAADQIVATQSAIAKIQEVY 208 >gi|70732881|ref|YP_262649.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf-5] gi|109893621|sp|Q4K534|RL4_PSEF5 RecName: Full=50S ribosomal protein L4 gi|68347180|gb|AAY94786.1| ribosomal protein L4/L1 family [Pseudomonas fluorescens Pf-5] Length = 200 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V+ G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ A+R L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVETPKTKDLLGKLNNMSLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|289641165|ref|ZP_06473333.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata] gi|289509106|gb|EFD30037.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata] Length = 263 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V G + G + + +IF + ++ +V+ Q R G ++ R EV G Sbjct: 27 TVVVHAPAGGEAGSVDLPGEIFDVALNVPLIHQVVVAQLAAARQGTHSTRTRGEVRGGGR 86 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 87 KPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRSYEQRTPKKMKAAALRGALSDRARGGR 146 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ + VS TK VT R + +++ D + RNIP+++LL + Sbjct: 147 VHVVSSFVSGDTPSTKTAVTALRTITDVRRVLVVVDHTDELTWKSLRNIPSVHLLDPGQL 206 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V ++ A+ +R Sbjct: 207 NTYDVLVSDDVVFTRDALATFVER 230 >gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group] Length = 197 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 + D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K Y QKGTGRARH + Sbjct: 3 LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHGTL 62 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 QFRGG GP P L KKVR L L+ ALS + ++V ++L KTK Sbjct: 63 RGPQFRGGATMHGPKPRSHTIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKN 122 Query: 139 LVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 +V+ + D L++DG +D+ +LA +N+ +N+LP G+NVY IL+ LV+++ Sbjct: 123 VVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRD 182 Query: 198 AIEALEDR 205 A+ + +R Sbjct: 183 AVNRIVER 190 >gi|157377448|ref|YP_001476048.1| 50S ribosomal protein L4 [Shewanella sediminis HAW-EB3] gi|189042886|sp|A8G1E7|RL4_SHESH RecName: Full=50S ribosomal protein L4 gi|157319822|gb|ABV38920.1| ribosomal protein L4/L1e [Shewanella sediminis HAW-EB3] Length = 201 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + ++L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVESFSVEAPKTKELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200 >gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis] Length = 302 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ D E GV + D+FA+ P+ IL V WQ KRI + +K R+EV G K Sbjct: 77 TLEQQDSEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRGGGRKP 136 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRARH S +RGGG + GP P + LP KVR L L+ ALS K + + Sbjct: 137 WRQKGSGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVLGLKVALSSKLAQSHL 196 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181 V+++L +YL+ R +L++ +L + A + +IN++P G+ Sbjct: 197 HVVESLNLPSPDPQYLLDLARRRHWGESLLLVHESEELPEDVLQATATLKSINVIPALGL 256 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+ +L+ LVL+ + LED+ Sbjct: 257 NVHSLLKHQALVLTLETLRFLEDKL 281 >gi|146281171|ref|YP_001171324.1| 50S ribosomal protein L4 [Pseudomonas stutzeri A1501] gi|166199849|sp|A4VHN1|RL4_PSEU5 RecName: Full=50S ribosomal protein L4 gi|145569376|gb|ABP78482.1| ribosomal protein L4 [Pseudomonas stutzeri A1501] Length = 200 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VS+ F + + ++ + + R G + K RS+V+ G + + Sbjct: 3 LNVNGAQA--IEVSDRTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR L++ S ++V+ Sbjct: 61 QKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKKMYRAALRSILAELVRSERLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ KTK L ++ + LS+ LI+ +D+N LAARN+P++++ VQG + + Sbjct: 121 EDFAVDAPKTKALASKLNGMGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYDKVLITVSAVKKFEELL 199 >gi|257454048|ref|ZP_05619322.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60] gi|257448526|gb|EEV23495.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60] Length = 200 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +S+ F + + ++ +V+ R G K R EV+ G K + Q Sbjct: 2 NLNTVTGSAVELSDVAFGREFNEALVHQVVTAYLAGGRQGSRAQKTRGEVSGGGKKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGG+AF P + +K+ A++ L++ + ++++D Sbjct: 62 KGTGRARAGSIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQDRLVLVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ KTK L+ + + L+ ALI+ ++D N LAARNIP +++L ++ ++ Sbjct: 122 DISISAPKTKELIAKLKDLNAPKALIVT-NEVDENLYLAARNIPYVSVLGSTEVDPVSLI 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K+++S +A + +E Sbjct: 181 AFDKVIMSVAAAKEIEGVL 199 >gi|160883063|ref|ZP_02064066.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483] gi|237718742|ref|ZP_04549223.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4] gi|299144623|ref|ZP_07037691.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23] gi|156111535|gb|EDO13280.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483] gi|229451874|gb|EEO57665.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4] gi|298515114|gb|EFI38995.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23] Length = 208 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|237717400|ref|ZP_04547881.1| 50S ribosomal protein L4 [Bacteroides sp. D1] gi|262406165|ref|ZP_06082715.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22] gi|294644060|ref|ZP_06721837.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC 2a] gi|294807316|ref|ZP_06766129.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens SD CC 1b] gi|229443383|gb|EEO49174.1| 50S ribosomal protein L4 [Bacteroides sp. D1] gi|262357040|gb|EEZ06130.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22] gi|292640584|gb|EFF58825.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC 2a] gi|294445481|gb|EFG14135.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens SD CC 1b] Length = 208 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVIVLTENSLKAI 203 >gi|304310017|ref|YP_003809615.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1] gi|301795750|emb|CBL43949.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1] Length = 200 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ G +SVSE F + ++ +V+ R G K RSEV+ G K + Q Sbjct: 2 NLNIASGGSVSVSEVAFGRDFNEALVHQVVTAFMAGSRQGTKGQKTRSEVSGGGKKPWKQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KG+GRAR + +RGGGK F + KK+ A++ LS+ + ++V+D Sbjct: 62 KGSGRARAGTIRSPIWRGGGKVFAASTRDHSQKVNKKMYRGAMQCILSELIRQDRVVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + KTK L+ + + L L +ALI+ +D N L+ARN+ N+ + V+ I+ ++ Sbjct: 122 QFAMENPKTKELIQKLKGLGLDSALIVSDF-VDENLFLSARNVVNVGVCDVEAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K+V++ A+ E+ Sbjct: 181 AFDKVVVTVGALRKFEEML 199 >gi|329577748|gb|EGG59174.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1467] Length = 188 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 100/185 (54%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 +IF ++P + ++ + Q R G K RS V G K + QKGTGRAR S Sbjct: 3 EIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSP 62 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 Q+RGGG FGP P + LPKKVR LA++ LSDK N+++ ++ L KTK Sbjct: 63 QWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGLSFDAPKTKEFKQ 122 Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 L + +++ + L+ARN+PN++++ ++V D++ +K++ +++A+ Sbjct: 123 VLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALTQ 182 Query: 202 LEDRF 206 +E+ Sbjct: 183 IEEVL 187 >gi|254362073|ref|ZP_04978198.1| ribosomal protein L4 [Mannheimia haemolytica PHL213] gi|153093629|gb|EDN74594.1| ribosomal protein L4 [Mannheimia haemolytica PHL213] Length = 200 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + ++VSE F + + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +R G F P + K++ A++ LS+ + Sbjct: 56 KKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRGAIKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ KTK L + + + L++ALII +D N LAARN+ +++ VQGI Sbjct: 116 RLVVVEKFEIDAPKTKVLAQKLKDMALNDALIIT-ANVDENLFLAARNLYKVDVRDVQGI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199 >gi|291286313|ref|YP_003503129.1| 50S ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809] gi|290883473|gb|ADD67173.1| ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809] Length = 208 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V+N+ E G I +S++I + + ++ V+ Q +R G + R+++ Sbjct: 1 MATFDVKNVKNETVGTIDLSDEIMSYPVKSSLMHEVVIMQLANRRAGTHSTLNRAKMKGG 60 Query: 61 -GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G+K + QKGTGRAR S+ +RGG FGP P +++PKK AL+ A+ K Sbjct: 61 RGAKPWRQKGTGRARSGSRKSPIWRGGATCFGPQPRDYSYSMPKKKIKNALKSAIRAKTE 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + ++D L + KTK V + ++I +LD A RNIP ++LL V Sbjct: 121 AGAVHILDALSVENGKTKEAVEILKNFAADRKVLIVFKELDDKAVCAFRNIPYVDLLDVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYD++ +++ K A+E +++ Sbjct: 181 GLNVYDVINSRTILVCKDAVERIQEVL 207 >gi|189347702|ref|YP_001944231.1| 50S ribosomal protein L4 [Chlorobium limicola DSM 245] gi|226730636|sp|B3EGY9|RL4_CHLL2 RecName: Full=50S ribosomal protein L4 gi|189341849|gb|ACD91252.1| ribosomal protein L4/L1e [Chlorobium limicola DSM 245] Length = 208 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + +++++IF + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNTGGTETGEVVTLNDEIFGADISEHAMYLDVKSILANRRQGTHKAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GRKPFRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKQLARRSALSAKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ E KTK + + L L ++ + D + RNI +N++ + Sbjct: 121 GQIVVVEDFRLGEIKTKPVADILKNLGLAEKKTLMLTPEYDMIIARSGRNIEALNIMSAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL +V K+A++ +ED Sbjct: 181 KASTYDILDSQAIVFQKAALKKIEDTL 207 >gi|209364189|ref|YP_001425181.2| 50S ribosomal protein L4 [Coxiella burnetii Dugway 5J108-111] gi|207082122|gb|ABS76582.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii Dugway 5J108-111] Length = 206 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ + Sbjct: 1 MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L E KT+ L + L+L N LII DRN LA+RN+ +++ Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +V++ A++ LE+R Sbjct: 180 VDPVSLVAAENIVVTVDAVKRLEERL 205 >gi|294669825|ref|ZP_06734884.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308218|gb|EFE49461.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 206 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ G +S S+ +FA + + ++ +++ R G R+EV ++ Sbjct: 1 MELKIINAQGQISGALSASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L KTK + + L L L + QLD N LA+RN+PN+ +L V Sbjct: 121 ERLYVVEELAVATPKTKEFAGQVKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEVHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K+V ++ AI LE+++ Sbjct: 180 VDPYSLLRYKKVVFTRDAIAQLEEQW 205 >gi|289742297|gb|ADD19896.1| mitochondrial ribosomal protein L4 [Glossina morsitans morsitans] Length = 301 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + N+D G+I + D+FA +P+ ++ + WQ + + + SK R+EV Sbjct: 71 QVWIENIDDVQERKLGIIELHPDVFATQPRVDVIHENIEWQRKYRFVSFAHSKTRAEVRG 130 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S FRGGG+A GP P + LP R + L LS K Sbjct: 131 GGRKPWPQKGTGRARHGSIRSPLFRGGGRAHGPRSPTTHFYMLPFFKRVMGLTATLSVKL 190 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLL 176 +D+ +I ++ ++L + +++I + N A + +NL+ Sbjct: 191 AQDDLHIIKDVEIPSGDHQFLKDLIIERNWGPSVLIVDKEDIFPENICEATDKLGYVNLM 250 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P +N Y +L+ LVL+ +A++ +E+R Sbjct: 251 PAYSLNTYSMLKHDTLVLTINAVKHIEERL 280 >gi|300865403|ref|ZP_07110208.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506] gi|300336586|emb|CBN55358.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506] Length = 211 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VRN GE+ G ++ + + I+ R LR Q R G + +K R+EV Sbjct: 1 MVNCVVRNWQGEEVGETTLELRVAKEENASHIVHRALRRQMVNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG +FGP P + KK R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVSFGPKPRDFDIKMNKKERRLALRTALQSRAAE 120 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 + +V+++ KTK L+T + +++ + N L+ RN+P + ++ Sbjct: 121 D-FIVVEDFSEQIARPKTKELITALARWGANPESRILLILPEKQENIYLSGRNVPTLKII 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YDIL K+V + +AI +++ + Sbjct: 180 LAGSLNIYDILAADKIVTTATAIAKMQEVY 209 >gi|238650971|ref|YP_002916827.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic] gi|259491568|sp|C4K2H8|RL4_RICPU RecName: Full=50S ribosomal protein L4 gi|238625069|gb|ACR47775.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic] Length = 207 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|113476578|ref|YP_722639.1| 50S ribosomal protein L4 [Trichodesmium erythraeum IMS101] gi|122964704|sp|Q110A8|RL4_TRIEI RecName: Full=50S ribosomal protein L4 gi|110167626|gb|ABG52166.1| LSU ribosomal protein L4P [Trichodesmium erythraeum IMS101] Length = 212 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ V+N GE+ G +++ + + I+ R LR Q R G + +K RSEV Sbjct: 1 MVDCVVKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P H + +K + LAL A S Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRLALSTAFQS--RS 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D++VI++L + KTK LV + +++ + N L+ RNI + ++ Sbjct: 119 EDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKII 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+YDIL K++ + +AI +++ + Sbjct: 179 LANNLNIYDILAADKIIATVTAIAKIQEVY 208 >gi|257463962|ref|ZP_05628347.1| 50S ribosomal protein L4 [Fusobacterium sp. D12] gi|317061485|ref|ZP_07925970.1| LSU ribosomal protein L1E [Fusobacterium sp. D12] gi|313687161|gb|EFS23996.1| LSU ribosomal protein L1E [Fusobacterium sp. D12] Length = 210 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ +L G G + V+E +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176 N+++V++ + KTK +V +D + L D N L+ARN+ N +L Sbjct: 121 NEVVVLEG-AIEAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209 >gi|170729008|ref|YP_001763034.1| 50S ribosomal protein L4 [Shewanella woodyi ATCC 51908] gi|226730725|sp|B1KMY2|RL4_SHEWM RecName: Full=50S ribosomal protein L4 gi|169814355|gb|ACA88939.1| ribosomal protein L4/L1e [Shewanella woodyi ATCC 51908] Length = 201 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + ++L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLIVVESFGVEAPKTKELKAKLAEMNLEDVLIVT-PEIDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200 >gi|77461299|ref|YP_350806.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1] gi|109893623|sp|Q3K5Y9|RL4_PSEPF RecName: Full=50S ribosomal protein L4 gi|77385302|gb|ABA76815.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1] Length = 200 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ A+R L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVETPKTKDLLGKLNNMSLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|118579120|ref|YP_900370.1| 50S ribosomal protein L4 [Pelobacter propionicus DSM 2379] gi|166199839|sp|A1ALU2|RL4_PELPD RecName: Full=50S ribosomal protein L4 gi|118501830|gb|ABK98312.1| LSU ribosomal protein L4P [Pelobacter propionicus DSM 2379] Length = 207 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N++ + G + +++D+F ++ ++ LR Q +R G K+K RSEVA + Sbjct: 1 MPSIAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR Q+ GGG AFGP P ++ KK R A+ ALS + + Sbjct: 61 GKKPFKQKGTGNARQGCVRAPQYPGGGVAFGPQPKEYHLSMNKKARKSAICSALSLQCKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N I V+D L TK V + ++ +LII N QL+ RN+P++ LL Sbjct: 121 NRITVMDKLDFSSISTKAFVDFMKRFEIERSLIITD-DFSNNLQLSCRNVPHVKLLKHDA 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N++DIL+ ++ ++ A++++E Sbjct: 180 LNIHDILKYKNIIFTQGAVQSVEGVL 205 >gi|254516912|ref|ZP_05128970.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3] gi|219674417|gb|EED30785.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3] Length = 188 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 20 SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79 S+ FA + + ++ +V+ R G K RS+V G K + QKGTGRAR + Sbjct: 2 SDASFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVRGGGKKPWRQKGTGRARAGTIR 61 Query: 80 VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 +R GG F P + +K+ AL+ +S+ + ++V++NL KTK L Sbjct: 62 SPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIISELARQDRLVVVENLDLDAPKTKLL 121 Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 V++ +++AL+I G +++ N LA+RN+ +++ VQGI+ +L K++++ A+ Sbjct: 122 VSQLDGYGVNSALLISG-EVNENLYLASRNLQKVDVRDVQGIDPVSLLSHDKVMVTVDAV 180 Query: 200 EALEDRF 206 + +E+ Sbjct: 181 KKIEEML 187 >gi|56477595|ref|YP_159184.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1] gi|81598743|sp|Q5P331|RL4_AZOSE RecName: Full=50S ribosomal protein L4 gi|56313638|emb|CAI08283.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1] Length = 206 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G + S+ +F + ++ +V+ R G KGR+EV+ + Sbjct: 1 MELKLLNDQGAQSATLQASDALFGRDYNEALIHQVVVAYMANARSGNRAQKGRAEVSKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L +K+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPLWRGGGRVFPNSPEDNFSQKLNRKMYRAGVASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +++N + KT+ L + + + L + L+I + D N L++RN+ + +L V Sbjct: 121 DRLAIVENFSVEAPKTRLLSQKLKGMGLDSVLVITD-EFDENLFLSSRNLHKVLVLEVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ +++++K A+ +E+ ++ Sbjct: 180 TDPVSLVHYDRVIVTKGALAKMEEAWQ 206 >gi|118616572|ref|YP_904904.1| 50S ribosomal protein L4 [Mycobacterium ulcerans Agy99] gi|166234692|sp|A0PM64|RL4_MYCUA RecName: Full=50S ribosomal protein L4 gi|118568682|gb|ABL03433.1| 50S ribosomal protein L4, RplD [Mycobacterium ulcerans Agy99] Length = 224 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 1/200 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E+ V+ DG+ G + + ++F + ++ +V+ Q R G +K R +V+ G Sbjct: 13 EIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+ + ALR ALSD+ + Sbjct: 73 KPYRQKGTGRARQGSTRTPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 132 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + LV+ + TK T + +++ + D+ + RN+P +++L + Sbjct: 133 IHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIGRDDQTGVKSVRNLPGVHILSPDQL 192 Query: 182 NVYDILRCSKLVLSKSAIEA 201 N YD+LR +V S A+ A Sbjct: 193 NTYDVLRADDVVFSVEALNA 212 >gi|71736691|ref|YP_276705.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|109893620|sp|Q48D37|RL4_PSE14 RecName: Full=50S ribosomal protein L4 gi|71557244|gb|AAZ36455.1| ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322321|gb|EFW78415.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. B076] gi|320331979|gb|EFW87915.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330879370|gb|EGH13519.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str. race 4] Length = 200 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ ALR L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+++ + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVEAPKTKDLLSKLTGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|26987196|ref|NP_742621.1| 50S ribosomal protein L4 [Pseudomonas putida KT2440] gi|148545740|ref|YP_001265842.1| 50S ribosomal protein L4 [Pseudomonas putida F1] gi|167031501|ref|YP_001666732.1| 50S ribosomal protein L4 [Pseudomonas putida GB-1] gi|170723905|ref|YP_001751593.1| 50S ribosomal protein L4 [Pseudomonas putida W619] gi|325272045|ref|ZP_08138486.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51] gi|46577244|sp|Q88QN4|RL4_PSEPK RecName: Full=50S ribosomal protein L4 gi|166199848|sp|A5VXP8|RL4_PSEP1 RecName: Full=50S ribosomal protein L4 gi|189042880|sp|B0KK68|RL4_PSEPG RecName: Full=50S ribosomal protein L4 gi|226730710|sp|B1JDW3|RL4_PSEPW RecName: Full=50S ribosomal protein L4 gi|24981834|gb|AAN66085.1|AE016238_3 ribosomal protein L4 [Pseudomonas putida KT2440] gi|148509798|gb|ABQ76658.1| LSU ribosomal protein L4P [Pseudomonas putida F1] gi|166857989|gb|ABY96396.1| ribosomal protein L4/L1e [Pseudomonas putida GB-1] gi|169761908|gb|ACA75224.1| ribosomal protein L4/L1e [Pseudomonas putida W619] gi|313496820|gb|ADR58186.1| RplD [Pseudomonas putida BIRD-1] gi|324102822|gb|EGC00228.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51] Length = 200 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+VA G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ ALR L++ S+ Sbjct: 56 KRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + LS+ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYEKVLITVSAVKKFEELL 199 >gi|307543826|ref|YP_003896305.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581] gi|307215850|emb|CBV41120.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581] Length = 202 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 1/200 (0%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 NL G G + VS+ FA + ++ +V+ R G K RS+V G K + Sbjct: 3 LNLAGAGAGTVEVSDATFAKDFNEALVHQVVTAYLAGGRQGTRAQKNRSDVRGGGKKPWR 62 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +R GG F P + +K+ A+R LS+ ++ + Sbjct: 63 QKGTGRARAGTIRSPIWRAGGVTFAARPQDHSQKVNRKMYRAAMRSILSELVRQERLVAV 122 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D + KTK L + L L LI+ ++D N LAARNIPN++++ V + + Sbjct: 123 DAFGVESPKTKQLAAKLGELGLEKVLIVT-EEVDENLYLAARNIPNVDVVDVAAADPVSL 181 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA+ E++ Sbjct: 182 VAFDKVLVTVSALRKFEEKL 201 >gi|239948318|ref|ZP_04700071.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|241563414|ref|XP_002401694.1| ribosomal protein L4, putative [Ixodes scapularis] gi|215501886|gb|EEC11380.1| ribosomal protein L4, putative [Ixodes scapularis] gi|239922594|gb|EER22618.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 207 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS++EDIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+KF Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +ID ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDRNEVDINFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207 >gi|218131326|ref|ZP_03460130.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697] gi|317476355|ref|ZP_07935604.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii 1_2_48FAA] gi|217986258|gb|EEC52595.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697] gi|316907381|gb|EFV29086.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii 1_2_48FAA] Length = 208 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYFFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ V Sbjct: 121 NGIIVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAI 203 >gi|124003663|ref|ZP_01688511.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134] gi|123990718|gb|EAY30185.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134] Length = 208 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N +GE G +++++ I+A++P ++ ++ +R G K+K R+E+ + Sbjct: 1 MELEVINREGESTGKKVTLADAIYAIEPNDHVIYLDVKQHLANRRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L +KV+SLA + AL+ K Sbjct: 61 TKKLKKQKGTGTARAGSIKSPLFRGGGRIFGPRPRDYHFKLNRKVKSLARKSALTYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I V+++ + KT+ + N ++ ++N L++RN+P +LP Sbjct: 121 NNITVVEDFNLEAPKTQDYQKVLNNISEKNEKTLLILPDHNKNLYLSSRNLPKAKVLPCS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN +++L K+++ +S++E +E+ F Sbjct: 181 QINTFELLNADKVLIFESSVEQIENLF 207 >gi|218245139|ref|YP_002370510.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8801] gi|257058164|ref|YP_003136052.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8802] gi|226730649|sp|B7K334|RL4_CYAP8 RecName: Full=50S ribosomal protein L4 gi|218165617|gb|ACK64354.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8801] gi|256588330|gb|ACU99216.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8802] Length = 211 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ ++N GE+ G ++ + + I+ R L Q R G + +K R+EV Sbjct: 1 MVNCIIKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRLALRTALDSRI-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D++V++N + KTK LV+ + +++ ++ N QL+ARN+P I LL Sbjct: 119 EDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLL 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVYD+L K+V + A+ +++ + Sbjct: 179 KADGLNVYDLLVADKIVATAEALSKVQEVY 208 >gi|28867855|ref|NP_790474.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato str. DC3000] gi|66047774|ref|YP_237615.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae B728a] gi|213969215|ref|ZP_03397353.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1] gi|237797433|ref|ZP_04585894.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6] gi|257483186|ref|ZP_05637227.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623848|ref|ZP_06456802.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648941|ref|ZP_06480284.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. 2250] gi|289675489|ref|ZP_06496379.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae FF5] gi|298489096|ref|ZP_07007118.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381722|ref|ZP_07230140.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato Max13] gi|302061078|ref|ZP_07252619.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato K40] gi|302130781|ref|ZP_07256771.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189278|ref|ZP_07265951.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae 642] gi|46577242|sp|Q889X0|RL4_PSESM RecName: Full=50S ribosomal protein L4 gi|75500414|sp|Q4ZMP5|RL4_PSEU2 RecName: Full=50S ribosomal protein L4 gi|28851091|gb|AAO54169.1| ribosomal protein L4 [Pseudomonas syringae pv. tomato str. DC3000] gi|63258481|gb|AAY39577.1| Ribosomal protein L4/L1e [Pseudomonas syringae pv. syringae B728a] gi|213925893|gb|EEB59450.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1] gi|298156408|gb|EFH97506.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869430|gb|EGH04139.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879441|gb|EGH13590.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330891930|gb|EGH24591.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. mori str. 301020] gi|330940886|gb|EGH43843.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. pisi str. 1704B] gi|330953196|gb|EGH53456.1| 50S ribosomal protein L4 [Pseudomonas syringae Cit 7] gi|330962524|gb|EGH62784.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966910|gb|EGH67170.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. actinidiae str. M302091] gi|330969820|gb|EGH69886.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330976641|gb|EGH76685.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330988281|gb|EGH86384.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012414|gb|EGH92470.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331018161|gb|EGH98217.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331020283|gb|EGI00340.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 200 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ ALR L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLTGMGLTDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|237739367|ref|ZP_04569848.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31] gi|229422975|gb|EEO38022.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31] Length = 209 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+V NL+G + V + +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNVYNLEGNQIDTLEVKDTVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR+LALR ALS K + Sbjct: 61 GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+D KTK +V +D ++ D N L+ARN+ N +L Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I VY +L+ K++L+K A+ +E+ Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208 >gi|311109611|ref|YP_003982464.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8] gi|310764300|gb|ADP19749.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8] Length = 206 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARSGNRAQKDRTEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 121 DRIAVVESFDLASPKTKDAAAKLKSLGLDSVLIITDS-VDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEEML 205 >gi|150025406|ref|YP_001296232.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86] gi|166234666|sp|A6GZ98|RL4_FLAPJ RecName: Full=50S ribosomal protein L4 gi|149771947|emb|CAL43421.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86] Length = 209 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N++G++ G + +S+ +FA++P + + ++ +R G K+K R+EVA + Sbjct: 1 MEVKVLNINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGTHKAKERAEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA R A S K Sbjct: 61 TRKIKKQKGTGTARAGSAKNPLFKGGGRVFGPRPRSYSFKLNKTVKRLARRSAFSIKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I+V+++ V + TK + +AL L + ++N L++RN+ N+L Sbjct: 121 ANIIVVEDFVFEAPNTKNFINVLKALGLEDKKSLFVLGDSNKNVYLSSRNLKATNVLTNS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL + LVL + ++E +E+ Sbjct: 181 ELSTYAILNANNLVLLEGSLEGIEENL 207 >gi|323700807|ref|ZP_08112719.1| ribosomal protein L4/L1e [Desulfovibrio sp. ND132] gi|323460739|gb|EGB16604.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans ND132] Length = 206 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + + G ++ ++F ++ IL +V+R Q +R G +K R+ A Sbjct: 1 MAKIQVVDQNNTKVGDFELAPEVFEVEIMPEILNQVVRAQRASQRQGTHATKNRALKAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + +RGG AFGP P + KKVR LAL+ ALS + Sbjct: 61 GRKPWRQKGTGRARAGSSNSPLWRGGAAAFGPQPRDYTFKVNKKVRKLALKMALSSRVSE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ ++ E KTK + L L+ LI+ D ++ARN+P+I ++ Sbjct: 121 AKMTVVSSIDLPEIKTKAFAEVAKNLGLNKTLIV-AKDADPKLTMSARNMPHIKVIEADK 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NVYD+L +LV+ +SA + +++R K Sbjct: 180 LNVYDVLLYPELVMLESAAQDVQERLK 206 >gi|237755897|ref|ZP_04584490.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium yellowstonense SS-5] gi|237691947|gb|EEP60962.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium yellowstonense SS-5] Length = 208 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 120/206 (58%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V N E G +++ EDIF + QG + V++W KR G + +K R+EVA + Sbjct: 1 MEFNVVNNKNEVVGKVNLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTGRARH + + F GGG A GP P ALPKKVR L+ L+ K +N Sbjct: 61 RKIYPQKGTGRARHGDRKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+++ + KTK + ++ L N +++ + N + RNIP + +L +G Sbjct: 121 ELIVVEDFNFEAPKTKNAIEVLKSFGLENSKVLLVLPEKLENVIKSFRNIPKVKILLAEG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L K+++ KSA+E +++R Sbjct: 181 INSYDVLNNDKVIIFKSALEKIQERL 206 >gi|157804034|ref|YP_001492583.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel] gi|166199857|sp|A8EZL5|RL4_RICCK RecName: Full=50S ribosomal protein L4 gi|157785297|gb|ABV73798.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel] Length = 207 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G IS+++DIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP+ LPKKVR L L HALS+KF Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT +LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 121 GKLLVIDSLKLDKPKTSFLVNILNKFQGQSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVNVLEERLR 207 >gi|262038243|ref|ZP_06011633.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264] gi|261747710|gb|EEY35159.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264] Length = 214 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 7/213 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L+ LDG G + V E+IF ++P + ++ VL + R G + +K R+EV Sbjct: 1 MPVLNTYKLDGSKAGTVEVKEEIFGIEPNKTVMHEVLVAELAGAREGNASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P + KKVR LALR AL+ K + Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRDYTKKVNKKVRRLALRSALATKINN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGC-----QLDRNFQLAARNIPNI 173 D++V+D+ KTK V +AL+ L I D N + + RN+ + Sbjct: 121 GDLIVLDDFTLDVPKTKTFVQFAKALNFAGEKQLFIADYNGETFNRDINLEYSVRNLEKV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L + ++++ +++ K+V++K A+ +E+ Sbjct: 181 MTLDSRSLSIFWLIKQDKIVVTKEALATIEEVL 213 >gi|119773355|ref|YP_926095.1| 50S ribosomal protein L4 [Shewanella amazonensis SB2B] gi|166199860|sp|A1S219|RL4_SHEAM RecName: Full=50S ribosomal protein L4 gi|119765855|gb|ABL98425.1| LSU ribosomal protein L4P [Shewanella amazonensis SB2B] Length = 201 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+E+ TG Sbjct: 1 MELVLKDAS----RALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEITGTG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +RGGG F + KK+ AL LS+ Sbjct: 57 KKPWRQKGTGRARAGGIKGPLWRGGGVTFAAKTQDHSQKVNKKMYRGALMSILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK L + +A+DL + LI+ ++D N LAARN+ +++ V G+ Sbjct: 117 RLVVVEQFAVEAPKTKELKAKLKAMDLEDVLIVT-AEVDENLFLAARNLYKVDVRDVAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ A++ +E+ Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200 >gi|49089074|gb|AAT51638.1| PA4262 [synthetic construct] Length = 201 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VSE F + + ++ + + R G K RSEV+ G K + Sbjct: 3 LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR L++ + ++V+ Sbjct: 61 QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + KTK LV + L L + LI+ +D N LAARN+ ++++ VQG ++ + Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDVLIVTDG-VDENLYLAARNLAHVDVRDVQGSDLVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199 >gi|50364939|ref|YP_053364.1| 50S ribosomal protein L4 [Mesoplasma florum L1] gi|81612930|sp|Q6F1Z3|RL4_MESFL RecName: Full=50S ribosomal protein L4 gi|50363495|gb|AAT75480.1| 50S ribosomal protein L4 [Mesoplasma florum L1] Length = 208 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ G++ IS+++ ++ + P + + + Q R G K+K R+EV G Sbjct: 1 MELKVLNVQGQEVKTISLNDSVWNVAPHKQAIYDTVISQQAALRQGTKKTKTRAEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG FGP P I + KKVR+LA + ALS K Sbjct: 61 KKPWRQKGTGRARQGSIRAPHWRGGGVTFGPTPDINYKKSVNKKVRALAFKSALSIKASE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++D + TK +++ + L + + +I + + ++ NI + LP Sbjct: 121 QNLVIVDKFDFAKPSTKEMISVMKNLQIDDQKTLIITKENEELVIKSSSNIKGVKTLPSI 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+++ A A+E + Sbjct: 181 KLNVFDILNATKLVMTEEAAMAVEGVY 207 >gi|311693272|gb|ADP96145.1| 50S ribosomal protein L4 [marine bacterium HP15] Length = 201 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ G KG ISVS+ FA + ++ +V+ R G K RSEV+ G Sbjct: 1 MELTIT---GSGKG-ISVSDAAFAKDFNESLVHQVVTAYMAGARQGTKAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ A+R S+ Sbjct: 57 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPRGFEQKVNRKMYRAAMRSIFSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D++ KTK + + + ++NALI+ +++N LA+RNIP++++ + G+ Sbjct: 117 RLVVVDDMNVDSPKTKAFNAKLKDIGVTNALIL-SDNVEQNLHLASRNIPHVDVRDIAGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLVAFEKVVVTVPALKKIEEML 200 >gi|264676443|ref|YP_003276349.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2] gi|299531235|ref|ZP_07044646.1| 50S ribosomal protein L4 [Comamonas testosteroni S44] gi|262206955|gb|ACY31053.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2] gi|298720818|gb|EFI61764.1| 50S ribosomal protein L4 [Comamonas testosteroni S44] Length = 207 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L KTK L +F+A++LS+++++ ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206 >gi|145219062|ref|YP_001129771.1| 50S ribosomal protein L4 [Prosthecochloris vibrioformis DSM 265] gi|189042879|sp|A4SCR0|RL4_PROVI RecName: Full=50S ribosomal protein L4 gi|145205226|gb|ABP36269.1| LSU ribosomal protein L4P [Chlorobium phaeovibrioides DSM 265] Length = 208 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V G + G + ++ +DIF + + + ++ +R G KSK R+EV Sbjct: 1 MELKVLTTAGTESGEVVTLRDDIFGAEVSEHAVYLDVKSILANRRQGTHKSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV++LA R A S K Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMVGGGTIFGPTPHGYDQKVNKKVKALARRSAFSSKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ E KTK + L L ++ + + + +NI +N++ + Sbjct: 121 GRILVVEDFKLDEIKTKPFAAILKNLGLDEKKTLMLTPEYNVIITRSGKNIQTVNIMSAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL ++ K+A++ +E+ Sbjct: 181 KASTYDILNSHTVLFQKAALKKIEETL 207 >gi|312140917|ref|YP_004008253.1| 50S ribosomal protein l4 rpld [Rhodococcus equi 103S] gi|325675445|ref|ZP_08155129.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707] gi|311890256|emb|CBH49574.1| 50S ribosomal protein L4 RplD [Rhodococcus equi 103S] gi|325553416|gb|EGD23094.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707] Length = 221 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ G+ G + + +IF ++ +V+ Q R G +K R EV G Sbjct: 9 TLDVKAAGGKTNGTVDLPSEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGGK 68 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 69 KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 128 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LV+ + TK + L ++ + D + +N+ ++ + + Sbjct: 129 IHVITELVAGQVPSTKTAKSFLGELSDRKKFLLVVGREDIAAWKSVQNLDGVHPIAPDQL 188 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ Sbjct: 189 NTYDVLNSDDVVFSLEALNTF 209 >gi|327479324|gb|AEA82634.1| 50S ribosomal protein L4 [Pseudomonas stutzeri DSM 4166] Length = 200 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VS+ F + + ++ + + R G + K RS+V+ G + + Sbjct: 3 LNVNGAQA--IEVSDRTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR L++ S ++V+ Sbjct: 61 QKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKKMYRAALRSILAELVRSERLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ KTK L ++ + LS+ LI+ +D+N LAARN+P++++ VQG + + Sbjct: 121 EDFAVDVPKTKALASKLNGMGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYDKVLITVSAVKKFEELL 199 >gi|229815774|ref|ZP_04446099.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM 13280] gi|229808690|gb|EEP44467.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM 13280] Length = 208 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N +G+ +++ ++ ++P ++ +++ Q R G +KGRSEV+ Sbjct: 1 MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+RGGG FGP P V + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D+ ++ TK V +AL + L I + D N L+ RNIP ++ Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGIEGKRLTIIVREDDINAYLSFRNIPKTFIITPA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 N YD++ L++ + Sbjct: 181 EANTYDLVNNGALLMPADIAAHFGEVL 207 >gi|1350752|sp|P49226|RL4_MORMO RecName: Full=50S ribosomal protein L4 gi|1037107|gb|AAB41513.1| L4 [Morganella morganii] Length = 200 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVMKDAQ-----SLTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 56 KKPWRQKGTGRARSGSIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++ + KTK LV + + + L + +I+ ++D N LAARN+ +++ V I Sbjct: 116 RLIIVEKFAVEAPKTKLLVQKLKDMALEDVMIVTH-EVDENLFLAARNLYKVDVRDVTAI 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 175 DPVSLIAFGKVVMTAEAVKQVEEML 199 >gi|298207728|ref|YP_003715907.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559] gi|83850365|gb|EAP88233.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559] Length = 208 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +++S+ +F ++P + + ++ KR G K+K R+E+A + Sbjct: 1 MEIAVLDIKGKEIGRKVTLSDAVFGIEPNEHAVYLDVKQHLANKRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK + LA R ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKKQKQLARRSALSQKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I++++N KTK + L + N +I ++N L++RN N++ V Sbjct: 121 NAIVIVENFSFDAPKTKNYIDFLTNLGIENNKSLIVLGDTNKNVYLSSRNFKGSNVVTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y I+ LVL + ++E +E Sbjct: 181 ELNTYKIMNSQSLVLLEGSLEEIESNL 207 >gi|298531084|ref|ZP_07018485.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1] gi|298509107|gb|EFI33012.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1] Length = 206 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ V + D ++ G I + E++F++ + ++ + +R R G K R+ ++ Sbjct: 1 MLSAKVYSQDNQEVGEIDLQENVFSVSVKPELMHQAVRAHRAAVRSGTVGVKNRALISGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +RGG GP L KKVR LAL+ ALS K+ Sbjct: 61 GRKPWRQKGTGRARAGTGRSPLWRGGAVIHGPKARDYSIKLNKKVRRLALKMALSTKYAQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++DNL +TK V+ L L LI+ + N +L+ARN+P + ++ Sbjct: 121 DKLQILDNLDLSRIRTKDFVSIKNNLGLKKPLIVT-AEKSNNLELSARNVPGVEVITQDS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 INVY++L+ +LV+ K A+E L++R Sbjct: 180 INVYEVLKHQELVMDKQAVEKLQERL 205 >gi|37912951|gb|AAR05283.1| ribosomal protein L4 [uncultured marine gamma proteobacterium EB000-45B06] gi|40063178|gb|AAR38015.1| ribosomal protein L4/L1 family [uncultured marine bacterium 562] Length = 204 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + + I++S+ F + ++ + + R G SK K RSEV G Sbjct: 1 MKIELLSSTKNQ--DINISDSAFGKDFNESLVHQAVVSFMAGARQGTSKQKTRSEVRGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F P + KK+ A+R S+ Sbjct: 59 KKPFRQKGTGRARAGTIRSPLWRGGGVTFAATPRDYSKKINKKMYRAAIRSIFSELLRQG 118 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ I+ V + KTK +V+ LS LII +LD N L+ RNIPN++++ V+ I Sbjct: 119 RLVAIEKPVLDKPKTKEIVSLLNEFSLSKVLIIID-ELDMNLYLSTRNIPNVDVITVREI 177 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N ++L+ +K+ ++ A + +E+ Sbjct: 178 NPVNLLKANKVAVTADAFKQIEE 200 >gi|71905962|ref|YP_283549.1| 50S ribosomal protein L4 [Dechloromonas aromatica RCB] gi|109893589|sp|Q47JA2|RL4_DECAR RecName: Full=50S ribosomal protein L4 gi|71845583|gb|AAZ45079.1| LSU ribosomal protein L4P [Dechloromonas aromatica RCB] Length = 207 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G++ + S+ +F + ++ +++ R G + K RSEV +T Sbjct: 1 MELKVINEQGQEAAKLQASDVLFGRDFNEALVHQIVVAYQANARSGDRQQKDRSEVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F P + KK+ + LS+ Sbjct: 61 TKPWRQKGTGRARAGSNGSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMAAILSELARQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++VID+L KTK + +++ L L++ +L+ N L++RN+PN+ +L Q Sbjct: 121 DRLVVIDDLSVDAPKTKLFTQKLKSMGLEGNLLVITDELNENLYLSSRNLPNVLVLEAQE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +K++++K+A+ E+ + Sbjct: 181 ADPVSLVRFAKVLVTKNAVAKFEEMW 206 >gi|104779756|ref|YP_606254.1| 50S ribosomal protein L4 [Pseudomonas entomophila L48] gi|166199846|sp|Q1IFW5|RL4_PSEE4 RecName: Full=50S ribosomal protein L4 gi|95108743|emb|CAK13437.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Pseudomonas entomophila L48] Length = 200 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+VA G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ ALR L++ S+ Sbjct: 56 KRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYEKVLITVSAVKKFEELL 199 >gi|229592902|ref|YP_002875021.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25] gi|312963367|ref|ZP_07777850.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6] gi|259491566|sp|C3K2X5|RL4_PSEFS RecName: Full=50S ribosomal protein L4 gi|229364768|emb|CAY52765.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25] gi|311282447|gb|EFQ61045.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6] Length = 200 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + I VSE F + + ++ + + R G + K RS+V G Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +RGGG F P L KK+ ALR L++ ++ Sbjct: 56 KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAALRSILAELVRTD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P++++ VQG Sbjct: 116 RLVVVQDFAVESPKTKDLLGKLNNMSLTDVLIV-SEAVDQNLYLAARNLPHVDVRDVQGS 174 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ SA++ E+ Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199 >gi|163859272|ref|YP_001633570.1| 50S ribosomal protein L4 [Bordetella petrii DSM 12804] gi|226730624|sp|A9IIZ9|RL4_BORPD RecName: Full=50S ribosomal protein L4 gi|163263000|emb|CAP45303.1| 50S ribosomal protein L4 [Bordetella petrii] Length = 205 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +V+ R G K R+EV +T Sbjct: 1 MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQVVVAYQANARSGNRAQKDRAEVKHTT 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D + KTK V + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVDTFGLESPKTKLAVAKLKSLGLDSVLIITDA-VDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204 >gi|187476540|ref|YP_784564.1| 50S ribosomal protein L4 [Bordetella avium 197N] gi|109893578|sp|Q2L2F7|RL4_BORA1 RecName: Full=50S ribosomal protein L4 gi|115421126|emb|CAJ47610.1| 50S ribosomal protein L4 [Bordetella avium 197N] Length = 205 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAYQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D + KTK + +AL L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVDTFSLESPKTKLAAEKLKALGLDSVLIITDT-VDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204 >gi|50955565|ref|YP_062853.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07] gi|81612625|sp|Q6ACZ6|RL4_LEIXX RecName: Full=50S ribosomal protein L4 gi|50952047|gb|AAT89748.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 221 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 2/204 (0%) Query: 1 MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + V +L G+ G I + + +F ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MATSIDVVDLKGKKAGSIELPDSLFDVQTNIPLIHQVVTAQLAAARQGTHKTKNRGEVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ Sbjct: 61 AGRKPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRDYSQRTPKKMIAAALLGALSDRAR 120 Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I + + + TK +V + S +++ + D + RNI +++ L Sbjct: 121 GSRIHAVQAFTAGEAPSTKAVVELLSGVATSKHVLVVLERDDELAFKSVRNIASVHALTY 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +++A+E Sbjct: 181 DQLNAYDVLVSDDIVFTQAALEGF 204 >gi|220935491|ref|YP_002514390.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7] gi|254803762|sp|B8GV57|RL4_THISH RecName: Full=50S ribosomal protein L4 gi|219996801|gb|ACL73403.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7] Length = 201 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V++ + VS+ F + + ++ + + R G KGRS+V+ G Sbjct: 1 MKLQVQDTK----KDLEVSDQTFGREFNEDLVHQAVVAYMAGGRAGTKAQKGRSDVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKG+GRAR + +R GGK F P L +K+ A+R S+ Sbjct: 57 AKPWKQKGSGRARAGTIRSPIWRTGGKVFAARPRDYSQKLNRKMYRAAMRSIFSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ KTK L+ + L +SNALI+ Q D N L+ARN+P +++ V G+ Sbjct: 117 RLVVVDSFAVDAPKTKGLLEKLGGLGVSNALIVTD-QADANLYLSARNLPGVDVSEVGGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ +E+ Sbjct: 176 DPVSLVGFEKVLITVPALKQVEEWL 200 >gi|134096320|ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arsenicoxydans] gi|166234675|sp|A4G9T7|RL4_HERAR RecName: Full=50S ribosomal protein L4 gi|133740223|emb|CAL63274.1| 50S ribosomal subunit protein L4 [Herminiimonas arsenicoxydans] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI++L KTK L + + + L + L+I LD N LA+RN+PN+ + + Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDS-LDENLLLASRNLPNVLICEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K A+ +E+ Sbjct: 180 ADPVSLVFYKKILITKLALAKIEEML 205 >gi|237747366|ref|ZP_04577846.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS] gi|229378717|gb|EEO28808.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N + G + + IF + + ++ +++ R G + K R VA+T Sbjct: 1 MELKLLNGSDQAVGKVEAPDTIFGREYNEALIHQIVVAFQANARTGDRQQKSRETVAHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNTPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VI+ L KTK L + + ++ L+I D N LA+RN+PN+ ++ Sbjct: 121 DRLTVIEGLAIDAPKTKMLAQKLKGFGFNSVLVITDV-FDENLYLASRNLPNVLVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++K+A+ +E+ Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEEML 205 >gi|304384276|ref|ZP_07366687.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM 16973] gi|304334592|gb|EFM00874.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM 16973] Length = 209 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N++G++ G ++++E IFA++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVNVLNINGQETGRKVTLNESIFAIEPNDHVLYLAVKQYLANQRQGTAKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L +KV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYGFKLNRKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + + L++ L++ + ++N L+ARN+ ++ Sbjct: 121 NAIIVVEDFDIETPKTKDFINITKNLNVDGRKLLLVLPKENKNVYLSARNLQRSEVMSAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y IL LV+++++++ + Sbjct: 181 TLNSYKILNADVLVVTENSLKVI 203 >gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis] gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis] Length = 298 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + + N+D G++ + D+FA +P+ I+ + WQ + + + +K R+EV Sbjct: 68 QAWIENVDAVAERKVGLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRG 127 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S F+GGG GP P + LP R L L LS K Sbjct: 128 GGRKPWPQKGMGRARHGSIRSPLFKGGGVVHGPRSPTSHFYMLPFYKRVLGLTSTLSVKL 187 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLL 176 +D+ +I+N+ +++ + + + LIID + N A + +NL+ Sbjct: 188 AQDDLHIIENVEIPTRDAQFIKDLIQERNWGPSVLIIDKQDIFPENICYATDTLGYVNLM 247 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+ A++ LE+R Sbjct: 248 PAFGLNVYSMLKHDTLVLTVDAVKHLEERL 277 >gi|78484641|ref|YP_390566.1| ribosomal protein L4/L1e [Thiomicrospira crunogena XCL-2] gi|109893657|sp|Q31IY1|RL4_THICR RecName: Full=50S ribosomal protein L4 gi|78362927|gb|ABB40892.1| LSU ribosomal protein L4P [Thiomicrospira crunogena XCL-2] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L + L G++ G + VSE IF + + ++ +V+ R G K RS V Sbjct: 1 MDLKLIELASGKEAGSVKVSEAIFGAEFNEALVHQVVNAYLAGARSGTKGQKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKG+GRAR + + GGG+AF + KK+ A++ S+ + Sbjct: 61 GAKPWAQKGSGRARAGTSRGPIWIGGGRAFPGHNRDFSQKVNKKMYRGAMKAIFSELART 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+ + KTK V + L+L +AL+I D L+ARN+ + ++ V Sbjct: 121 ERLVVVDDFKVEAPKTKDFVAKLNTLNLKDALVITEG-FDEYLYLSARNLYHADVCDVAS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ +V+++ AI+ LE++ Sbjct: 180 IDPVSLVGFKSIVVTQGAIKQLEEKL 205 >gi|226939187|ref|YP_002794258.1| RplD [Laribacter hongkongensis HLHK9] gi|254803740|sp|C1DAR8|RL4_LARHH RecName: Full=50S ribosomal protein L4 gi|226714111|gb|ACO73249.1| RplD [Laribacter hongkongensis HLHK9] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ + +E +F + + ++ +V+ R G K RSE+ + Sbjct: 1 MELKVINQQGQAVESLQAAETLFGREYNEALVHQVVTAYLANARAGNRAQKDRSEINKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + +K+ + LS+ S Sbjct: 61 KKPFRQKGTGRARAGRASSPLWRGGGKVFPNSPDENFSHKVNRKMFRAGMAAILSELLRS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +++ID++ KTK + +AL L NAL+I G +LD N L++RN+ N+ ++ Sbjct: 121 DRLVIIDDIKVDSPKTKEFAAKAKALGLENALVITG-ELDENLYLSSRNLSNVLVIEASQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y ++R K+V+++ A++ E+++ Sbjct: 180 ADPYSLVRFDKVVVTRDAVKQFEEQW 205 >gi|212634830|ref|YP_002311355.1| 50S ribosomal protein L4 [Shewanella piezotolerans WP3] gi|226730724|sp|B8CND4|RL4_SHEPW RecName: Full=50S ribosomal protein L4 gi|212556314|gb|ACJ28768.1| Ribosomal protein L4/L1e [Shewanella piezotolerans WP3] Length = 201 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +RGGG F + KK+ AL+ S+ + Sbjct: 57 KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KTK L + + L + LI+ ++D N LAARN+ +++ V GI Sbjct: 117 RLVVVESFGVEAPKTKELKAKLNEMQLEDVLIVT-PEVDENLFLAARNLYKVDVRDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +K++++ AI+ +E+ Sbjct: 176 DPVSLIAFNKVLVTAEAIKQIEEML 200 >gi|224283710|ref|ZP_03647032.1| 50S ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] gi|313140866|ref|ZP_07803059.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] gi|313133376|gb|EFR50993.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171] Length = 221 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + V ++F ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDGKGQATGSVEVPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + ++V+D V+ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RVNAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K +EA Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAF 209 >gi|21674997|ref|NP_663062.1| 50S ribosomal protein L4 [Chlorobium tepidum TLS] gi|46577274|sp|Q8KAH3|RL4_CHLTE RecName: Full=50S ribosomal protein L4 gi|21648230|gb|AAM73404.1| ribosomal protein L4 [Chlorobium tepidum TLS] Length = 208 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G + G + +++++IFA++ + + ++ +R G K+K R+EV Sbjct: 1 MELKVLNIQGAETGEVVTLNDEIFAVEVSEHAMYLDVKAILANRRQGTHKAKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + +KV+ LA R ALS K + Sbjct: 61 GKKPFRQKGTGNARQGSTRSGLMVGGGAIFGPQPRTYDQKVNRKVKQLARRSALSAKAAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+D+ + KT+ + + L L ++ D + RNI +N++ Sbjct: 121 GQIVVVDDFSFEAIKTRPVADMLKNLGLAEKKTLLMMPHHDNVVSTSGRNIEKLNVMVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL ++ K A++ +E+ Sbjct: 181 QASTYDILNSQVVLFQKGALQKIEETL 207 >gi|302523994|ref|ZP_07276336.1| ribosomal protein L4/L1 [Streptomyces sp. AA4] gi|302432889|gb|EFL04705.1| ribosomal protein L4/L1 [Streptomyces sp. AA4] Length = 229 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ G+ G + + +IF ++ ++ +V+ Q R G +K R EV+ Sbjct: 1 MTSVELKTPAGKADGTVELPGEIFDVQANVALMHQVVVGQLAAARQGTHDTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYTQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ LV+ ++ TK T A + +++ + + ++ARN+P ++L+ Sbjct: 121 GQLHVVTELVTGEKPSTKAAKTAIAAATQAKRVLVVLHRDEELAWVSARNLPYVHLIWAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A +A Sbjct: 181 QLNTYDVLVNDDVVFTKAAYDAF 203 >gi|152980648|ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthinobacterium sp. Marseille] gi|166234676|sp|A6T3K3|RL4_JANMA RecName: Full=50S ribosomal protein L4 gi|151280725|gb|ABR89135.1| large subunit ribosomal protein L4 [Janthinobacterium sp. Marseille] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+NL + KTK L + + + L + L+I LD N LA+RN+PN+ + + Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDS-LDENLLLASRNLPNVLICEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K A+ +E+ Sbjct: 180 ADPVSLVFYKKILITKLALAKIEEML 205 >gi|226942779|ref|YP_002797852.1| 50S ribosomal protein L4 [Azotobacter vinelandii DJ] gi|259491548|sp|C1DKL4|RL4_AZOVD RecName: Full=50S ribosomal protein L4 gi|226717706|gb|ACO76877.1| Ribosomal protein L4/L1e [Azotobacter vinelandii DJ] Length = 200 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VSE F + + ++ + + R G + K RS+V+ G + + Sbjct: 3 LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYLAGGRQGSKQQKNRSDVSGGGKRPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F P L KK+ ALR LS+ ++V+ Sbjct: 61 QKGTGRARAGTSRGPLWRGGGVTFAARPQNHDQKLNKKMYRAALRSILSELVRQERLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ KTK LV++ L LS+ LI+ +D+N LAARN+P++++ V G + + Sbjct: 121 EDFAVDAPKTKSLVSKLGGLGLSDVLIVSDA-VDQNLYLAARNLPHVDVRDVLGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ A++ E+ Sbjct: 180 IAYDKVLITVPAVKKFEELL 199 >gi|241895186|ref|ZP_04782482.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313] gi|241871492|gb|EER75243.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313] Length = 207 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++++ DG + G I +++ +F ++P ++ + Q R G K RS V+ Sbjct: 1 MTKVALFKQDGSNAGDIELNDSVFGVEPNNNVITDAVLMQRASMRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + +PKK LAL+ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKMPKKAYRLALKSVLSQKVLD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V+D L KTK L+++ ++ + N LAARN+ N+ ++ +G Sbjct: 121 SSLVVVDALSFDAPKTKEFKAVLNNLNVNEKTLVVLDDDNANAALAARNLENVTVMTAKG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NV D++ KL++ +SA+ +E+ Sbjct: 181 VNVLDVINNDKLIVVQSALAQVEEVL 206 >gi|300309457|ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum seropedicae SmR1] gi|300072242|gb|ADJ61641.1| 50S ribosomal subunit L4 protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +V+ R G K K R EV++T Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ + KTK L + + + + + L+I LD LA+RN+P + ++ + Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDS-LDEKLLLASRNLPGVLVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++K A+ +E+ Sbjct: 180 ADPVSLVYFKNVLITKPALAKIEELL 205 >gi|295135700|ref|YP_003586376.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87] gi|294983715|gb|ADF54180.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87] Length = 208 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +S+S+ +F ++P + + ++ +R G K+K R+E+ + Sbjct: 1 MEVAVLDIKGKETGRKVSLSDAVFGIEPNEHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKLKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYGFKLNKALKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V+++ KTK + +A+ + +I + ++N L++RN+ ++ V Sbjct: 121 NAITVVEDFSFDTPKTKNFIEVLKAIGIQEKKSLIVLGESNKNVYLSSRNLKGSEVVSVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL +V + ++E LE Sbjct: 181 ELSTYKILNAKSVVFMEGSLEGLESNL 207 >gi|95931441|ref|ZP_01314147.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684] gi|95132509|gb|EAT14202.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684] Length = 206 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V ++ ++E +F + + ++ ++R+Q +R G S K R+ VA Sbjct: 1 MAKVTVYDMQKNQVSERELNEVVFDAEVRPYLVHDMVRYQLAARRQGTSACKNRAAVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR + + GGG AFGP P L +KV+ LAL ALS +F Sbjct: 61 GKKPFKQKGTGNARQGTVTAPNHVGGGVAFGPTPRNYAFKLNRKVKKLALCSALSSRFQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+ L TK +L +AL++ +L+ARN+ N+ +L G Sbjct: 121 QKLTVLSELKLDSISTKSFKQVVDRFELKDALVVIDAANPE-VELSARNLRNVKVLRADG 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 +NVYD+++ S LVL++ A+E LE Sbjct: 180 VNVYDVMKYSNLVLTEGAVEQLE 202 >gi|323344637|ref|ZP_08084861.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269] gi|323093907|gb|EFZ36484.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269] Length = 209 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P ++ ++ +R G +KSK RSE + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGIEPNDHVIYLDVKQYLANQRQGTAKSKERSEHRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKALARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L + ++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNMEAPKTKDFVNIAKNLKVEGLKTLLLLPEVNKNVYLSARNLQKAEVMIAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++ +++ ++D Sbjct: 181 TLNTYKVLNADVLVVTEKSLKTIDDIL 207 >gi|326388198|ref|ZP_08209801.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM 19370] gi|326207364|gb|EGD58178.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM 19370] Length = 207 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V LDG G + +S+ +F L+P+ IL RV+ WQ +R K++ RS+VA TG Sbjct: 1 MKVQVLTLDGTAAGDVELSDAVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP +L KKVR+L L+ ALS K + Sbjct: 61 KKFGRQKGGGTARHGDRKAPVFIGGGKAHGPRVREFNISLNKKVRALGLKMALSAKAKTG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L + KTK LV +F L++DG ++ F AARNI +N+LP G Sbjct: 121 -LVVVDTLDLADAKTKVLVGKFAKAGFGKKVLVVDGEAVNEGFARAARNIVGVNVLPAIG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARF 205 >gi|288818163|ref|YP_003432511.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6] gi|288787563|dbj|BAI69310.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6] gi|308751764|gb|ADO45247.1| ribosomal protein L4/L1e [Hydrogenobacter thermophilus TK-6] Length = 199 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 2/196 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G + + +D+F ++ ++ IL V++WQ +R G +K R E++Y+G K+ QKGTG Sbjct: 2 KLGDMELRDDVFNVEVKRHILWEVIKWQLACRRQGTHSTKTRGELSYSGRKLLPQKGTGN 61 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 ARH + + F GGG A GP P ++LPKKVR L L+ ALS K +++ D++ Sbjct: 62 ARHGDRGANIFVGGGVAHGPRPTDYYYSLPKKVRKLGLKMALSSKAQEGKMLLFDSINIG 121 Query: 133 E-CKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 + KTK + + + + + I + D + RN+PN+ +LP +G+NVYDIL Sbjct: 122 DVPKTKKAIEFLNSNGIKDIKVTIVIPEKDEIVMKSFRNLPNVKVLPAEGLNVYDILWAD 181 Query: 191 KLVLSKSAIEALEDRF 206 L + K AIE + +R Sbjct: 182 VLAIQKQAIEKIYERL 197 >gi|227876214|ref|ZP_03994330.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243] gi|269976880|ref|ZP_06183854.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1] gi|306819490|ref|ZP_07453197.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC 35239] gi|307701215|ref|ZP_07638237.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16] gi|227843175|gb|EEJ53368.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243] gi|269934711|gb|EEZ91271.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1] gi|304647782|gb|EFM45100.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC 35239] gi|307613609|gb|EFN92856.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16] Length = 214 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 2/201 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V + G+ G + + ++F L+ +L +V+ Q R G +K R +V+ G K Sbjct: 7 IDVLDGAGKKTGTVELPGEVFDLELNVPLLHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N + Sbjct: 67 PYRQKGTGRARQGSIRAPQFTGGGIVHGPQPRDYTQKTPKKMKAAALRQALSDRARANRV 126 Query: 124 MVIDNLVS-KECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+ + TK A+ ALI+ Q+D L+ N+ ++L V + Sbjct: 127 HVLSDFGVKDAPSTKAAKAALQNAVADRRALIVLTPQVDDVVALSVNNLAEHHVLFVGEL 186 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S SA+++ Sbjct: 187 NTYDVLANDDVVFSASALDSF 207 >gi|255690004|ref|ZP_05413679.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM 17565] gi|260624612|gb|EEX47483.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM 17565] Length = 208 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARNI N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L ++L++++++A+ Sbjct: 181 GLNTYRVLNAGVVMLTENSLKAI 203 >gi|148273800|ref|YP_001223361.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831730|emb|CAN02699.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 218 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 1/203 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V + G G + + +F ++ ++ +V+ Q R G K+KGR EV+ G Sbjct: 6 QLDVLDATGAVTGSVDLPASLFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S Q GGG GP P PKK+ + AL ALSD+ Sbjct: 66 KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++L + + T+ +V + S ++I + D + RNIP +++L + Sbjct: 126 LHVIESLSAGDVPSTRTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N YD+L +V +K A +A + Sbjct: 186 NAYDVLVSDDIVFTKGAFDAFVE 208 >gi|260439542|ref|ZP_05793358.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] gi|291042778|ref|ZP_06568519.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] gi|291013212|gb|EFE05178.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2] Length = 206 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + G+ G +SVS+ +FA + + ++ +++ R G K R+EV ++ Sbjct: 1 MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGT RAR S +R GG+AF P + +K+ + LS Sbjct: 61 KKPWRQKGTDRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VI+ L ++ KTK + + L L L + +LD N LA+RN+PN+ +L Q Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFVT-KRLDENVYLASRNLPNVLVLEAQQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +LR K++++K A+ LE+++ Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205 >gi|160888398|ref|ZP_02069401.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492] gi|317477750|ref|ZP_07936943.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36] gi|156862075|gb|EDO55506.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492] gi|316906095|gb|EFV27856.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36] Length = 208 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ + Sbjct: 121 NAVVVVEDFSFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAI 203 >gi|39997948|ref|NP_953899.1| 50S ribosomal protein L4 [Geobacter sulfurreducens PCA] gi|46577153|sp|P61063|RL4_GEOSL RecName: Full=50S ribosomal protein L4 gi|39984893|gb|AAR36249.1| ribosomal protein L4 [Geobacter sulfurreducens PCA] gi|298506887|gb|ADI85610.1| ribosomal protein L4 [Geobacter sulfurreducens KN400] Length = 207 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 116/207 (56%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V ++ GV+ +++++F + ++ ++ ++ Q +R G K R+ V+ Sbjct: 1 MATIDVFDISKNKVGVMDLNDNVFNGEVKEYLIHEAIKVQLANRRAGTVSVKNRAIVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG+AR F GGG AFGP P + ++ KK R A+R ALS + Sbjct: 61 GKKPYRQKGTGQARQGCIRAPHFVGGGVAFGPRPKVYNLSMNKKARKAAVRSALSMLYKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D+ TK VT +A DL+ L++ + + N +L+ARN+ ++ +L + Sbjct: 121 NKLSVLDSFTLPSISTKGFVTVLKAFDLAKTLVVVD-EPNLNLELSARNVKDVKVLKAEH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NV+DI++ + +++++SA+ +E + Sbjct: 180 LNVFDIVKYNNIIVTQSAVRTIEGVLQ 206 >gi|110639534|ref|YP_679743.1| 50S ribosomal protein L4 [Cytophaga hutchinsonii ATCC 33406] gi|122966548|sp|Q11QB3|RL4_CYTH3 RecName: Full=50S ribosomal protein L4 gi|110282215|gb|ABG60401.1| LSU ribosomal protein L4P [Cytophaga hutchinsonii ATCC 33406] Length = 208 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ N+ G+D G + +S+DIFA++P + ++ +R G K+K R+EV+++ Sbjct: 1 MELSLLNIKGKDTGKKVVLSDDIFAVEPNNHAIYLDVKQYLAHQRQGTHKAKERAEVSFS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S+ F GGG FGP P + KKV+ LA + A S K Sbjct: 61 TKKLKKQKGTGGARAGSRKSPIFVGGGTIFGPRPRTYGFKVNKKVKDLARKSAFSHKLKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++ V++N KTK + + L L + +D+N L++RN+ ++ V Sbjct: 121 SNVTVLENFTLNAPKTKDYLAILKDLSLDTKKTLFVIADIDKNIILSSRNLKKAKVVSVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD++ K+V+S+ ++ +E Sbjct: 181 QINTYDLVNADKVVISEGSVSKIEALL 207 >gi|157363443|ref|YP_001470210.1| 50S ribosomal protein L4 [Thermotoga lettingae TMO] gi|166990954|sp|A8F4R2|RL4_THELT RecName: Full=50S ribosomal protein L4 gi|157314047|gb|ABV33146.1| ribosomal protein L4/L1e [Thermotoga lettingae TMO] Length = 226 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N+ GE G + +DIF ++P ++ R + +Q +R G +K RSEV+ Sbjct: 1 MAVVDLYNMKGEKVGTQELKDDIFNIEPNFDVMWRYVDYQLSLRRAGTVSTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K ++QK TGRARH S +R GG A GP P LPKK++ LAL+ ALS +F Sbjct: 61 GRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPKKMKKLALKSALSQRFKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLD--RNFQLAARNIPNIN-- 174 +I+V+D++ KTK + +A L + + N +L+ +NIP + Sbjct: 121 GNIIVVDDIGFDSSKTKNMRQLIKAFGFEGKKILFVLPWKRSEYENVKLSCKNIPGLKAI 180 Query: 175 -------------LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ + G+NV+DIL KLVL++ + +E+ Sbjct: 181 IADNPGATRENESIMRIDGLNVFDILNHEKLVLTRDMVMKIEEVL 225 >gi|88606786|ref|YP_504893.1| 50S ribosomal protein L4 [Anaplasma phagocytophilum HZ] gi|109893574|sp|Q2GL58|RL4_ANAPZ RecName: Full=50S ribosomal protein L4 gi|88597849|gb|ABD43319.1| ribosomal protein L4 [Anaplasma phagocytophilum HZ] Length = 208 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 115/205 (56%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++ N+ E G I ++ +F L+P++ +L V+ WQ ++R G K+KG S+++ T Sbjct: 1 MEVNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPVP ++L KKVR L L+ ALS K +N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAAN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L KT F ++ ++ A RN+ ++LL GI Sbjct: 121 KLVVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVRACRNLRGVDLLKCVGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DIL+ ++L+ +++LE R Sbjct: 181 NVLDILKHDCVILTVDTVKSLEGRL 205 >gi|282878760|ref|ZP_06287528.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC 35310] gi|281299151|gb|EFA91552.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC 35310] Length = 209 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 112/203 (55%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA R ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYRFKLNKKVKNLARRSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+++++ KTK V + L + ++ + ++N L+ARN+ +++ Sbjct: 121 NAIVIVEDFTLDAPKTKDFVNIAKNLKVEGKKSLLVLPEANKNVYLSARNLQQADVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++++++ + Sbjct: 181 TLNTYKVLNADVLVVTENSLKVI 203 >gi|50086214|ref|YP_047724.1| 50S ribosomal protein L4 [Acinetobacter sp. ADP1] gi|81613021|sp|Q6F7R3|RL4_ACIAD RecName: Full=50S ribosomal protein L4 gi|49532190|emb|CAG69902.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter sp. ADP1] Length = 205 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 4/201 (1%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++++ + G + +SE F + + ++ +V+ R G K R+EV+ G Sbjct: 5 NVNLKTVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGK 61 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGGK F P + +K+ A++ L++ + Sbjct: 62 KPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDR 121 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++++ KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ Sbjct: 122 LVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAID 180 Query: 183 VYDILRCSKLVLSKSAIEALE 203 ++ K+V+S +A + +E Sbjct: 181 PVSLIAFDKVVMSVAAAKKIE 201 >gi|225351044|ref|ZP_03742067.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158500|gb|EEG71742.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 221 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF ++ + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGNAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|166368483|ref|YP_001660756.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843] gi|189029509|sp|B0JI02|RL4_MICAN RecName: Full=50S ribosomal protein L4 gi|159028205|emb|CAO89812.1| rplD [Microcystis aeruginosa PCC 7806] gi|166090856|dbj|BAG05564.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843] Length = 210 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +V+N GE+ G ++ + + ++ RV+ R G + SK RSEV Sbjct: 1 MVNYTVKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K + LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQA-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 ++ +V+++ + KTK L S +++ ++ N L+ RNI N+ ++ Sbjct: 119 DNFIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKII 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++ +++ + +A+ +E+ + Sbjct: 179 RADSLNVYDVILADRVIATAAALAKIEEVY 208 >gi|167764371|ref|ZP_02436496.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC 43183] gi|167697776|gb|EDS14355.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC 43183] Length = 208 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAI 203 >gi|91216909|ref|ZP_01253873.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755] gi|91185070|gb|EAS71449.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755] Length = 209 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++SV ++ G++ G + +SE +F L+P ++ ++ KR G K+K R+E+ + Sbjct: 1 MKVSVLDIKGKETGREVELSESVFGLEPNDHVVYLDVKQHLANKRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + LS K + Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRVFGPRPRDYHFKLNKKLKRLARKTVLSQKLKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N +M++++ + KTK + L++ +I + ++N L++RN+ ++ V Sbjct: 121 NQLMIVEDFGFEAPKTKEFLNLLDNLNIRDKKSLIVLDESNKNVYLSSRNLKTAKVVNVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y+I+ + L++S+S ++ L++ Sbjct: 181 ELNTYNIMNSNFLLISESRLDELQNNL 207 >gi|87199271|ref|YP_496528.1| 50S ribosomal protein L4 [Novosphingobium aromaticivorans DSM 12444] gi|109893614|sp|Q2G8X9|RL4_NOVAD RecName: Full=50S ribosomal protein L4 gi|87134952|gb|ABD25694.1| LSU ribosomal protein L4P [Novosphingobium aromaticivorans DSM 12444] Length = 207 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 92/207 (44%), Positives = 126/207 (60%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ V NLDG KG + +S+D+F L+P+ IL RV+ WQ +R K++ RS+VA T Sbjct: 1 MKVQVLNLDGTAGKGEVELSDDVFGLEPRADILHRVVTWQLENRRGIARKARERSDVART 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K QKG G ARH + F GGGKA GP +L KKVR+L L+ ALS K + Sbjct: 61 GKKFGRQKGGGTARHGDRKAPIFIGGGKAHGPRVREFNISLNKKVRALGLKMALSSKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+DNL KTK LV + + L+IDG ++ NF AARNI +N+LP Sbjct: 121 G-LVVVDNLDVDA-KTKALVGQLAKANWGKKVLVIDGEGVNDNFAKAARNIVGVNVLPAI 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G NVYDIL+ LVL+++A+E LE RF Sbjct: 179 GANVYDILKHDTLVLTRAAVEKLEARF 205 >gi|329956704|ref|ZP_08297277.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056] gi|328524076|gb|EGF51152.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056] Length = 208 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIVVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAI 203 >gi|229818239|ref|ZP_04448521.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM 20098] gi|229784490|gb|EEP20604.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM 20098] Length = 219 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA---LKPQQGI--LARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF + + + + +V+ Q R G +K R+ Sbjct: 4 VTLNVTDAKGAKTGTVEAPAEIFGFSAEEVRAHVPLIHQVVVAQLAAARQGTHATKTRAN 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + ++ I V+D V+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANADRIAVVDFAVADAPSTKAAVAALTPITENKFTTVVLTRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 V +N YD++ +V SK A EA Sbjct: 184 FVDQLNTYDVVTAQYVVFSKEAFEAF 209 >gi|221069449|ref|ZP_03545554.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1] gi|220714472|gb|EED69840.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1] Length = 207 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMTAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L KTK L +F+A++LS+++++ ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206 >gi|303328093|ref|ZP_07358532.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3] gi|302861919|gb|EFL84854.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3] Length = 210 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ D+F ++ + IL V+R Q KR G +K R+ V+ Sbjct: 1 MATVKVYDQNKQESGEMTLASDVFEIEVRPEILNLVVRAQMAAKRAGTHNAKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KVR+LAL+ ALS + Sbjct: 61 GVKPWKQKGTGRARSGSNRSPIWRGGAIIFGPSPRDYGFKVNSKVRALALKMALSSRLAG 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+ + E KTK+ AL L ALI+ + + +ARNIP + L Sbjct: 121 ESLLVVKGIELPEAKTKHFAKVAGALGLGKALIVT-PEDNEALSRSARNIPGLTLTTPDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++V D+L+ +LVL + A+E+++ RF Sbjct: 180 LSVLDVLKHKQLVLLEGAVESVQARF 205 >gi|224537818|ref|ZP_03678357.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus DSM 14838] gi|224520504|gb|EEF89609.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus DSM 14838] Length = 208 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG +AFGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARAFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++++++ + KTK V + L +S L++ + ++N L+ARN+ + N+ V Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKKLKVSDKKLLVILPEANKNVYLSARNVESANVQTVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLNAGVVVFTESALSAI 203 >gi|317503979|ref|ZP_07961987.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606] gi|315665005|gb|EFV04664.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606] Length = 209 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 113/203 (55%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNIKGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKVQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++L + KTK V + + + ++ ++++N L+ARNI ++ Sbjct: 121 NAIIVVEDLKFEAPKTKEFVNFAKNIKVEGKKTLVLLSEVNKNVYLSARNIQGTEIMTAT 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L +V+++SA++A+ Sbjct: 181 SLNTYKVLNADIVVIAESALKAI 203 >gi|325179760|emb|CCA14163.1| 50S ribosomal protein L4 putative [Albugo laibachii Nc14] Length = 279 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 107/197 (54%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D +++ +F + ++ IL RV+RWQ +R G K+K RSE + K+ QKG Sbjct: 80 DESVVNTLALDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKG 139 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 +G+AR Q+RGG GPV + L KKVR+ +R ALS K + +++NL Sbjct: 140 SGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVALSQKLREGKLAIVENL 199 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 KTK L A NAL IDG ++ NF L++RNIP I+++P INVY IL+ Sbjct: 200 DWDVVKTKELRDTLIARKWDNALFIDGEEVTTNFILSSRNIPCIDVIPQHKINVYSILKR 259 Query: 190 SKLVLSKSAIEALEDRF 206 L+ + AI EDRF Sbjct: 260 DLLITTVDAITYFEDRF 276 >gi|260175417|ref|ZP_05761829.1| 50S ribosomal protein L4 [Bacteroides sp. D2] gi|315923647|ref|ZP_07919887.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697522|gb|EFS34357.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 208 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 116/203 (57%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMTNQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+V+++ + KTK V + L +S L++ + ++N L+ARNI + N+ + Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIESANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++++++A+ Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAI 203 >gi|331703715|ref|YP_004400402.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384085|gb|ACU78655.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri str. GM12] gi|256384917|gb|ACU79486.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri str. GM12] gi|296455249|gb|ADH21484.1| ribosomal protein L4/L1 family [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802270|emb|CBW54424.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 208 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V ++ G + I++++ ++ ++P Q + + Q R G K K R+EV+ G Sbjct: 1 MKLQVLDIKGNEVKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P I + KKVR+LA R LS K Sbjct: 61 RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + TK +V + L + + +I + + ++ NI + + Sbjct: 121 NNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|322418365|ref|YP_004197588.1| 50S ribosomal protein L4/L1e [Geobacter sp. M18] gi|320124752|gb|ADW12312.1| ribosomal protein L4/L1e [Geobacter sp. M18] Length = 207 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ G I VS+ +F ++ ++ ++ Q +R G K RS VA + Sbjct: 1 MAKLDVFDIKNAKVGEIEVSDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRSAVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR Q+ GGG AFGP P ++ KK R ALR ALS + Sbjct: 61 GKKPFKQKGTGQARQGCSRAPQYPGGGVAFGPQPKTYNLSMNKKARKAALRSALSMLYKK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V++N KTK V A +L L+I + +L+ARN+ ++ +L +G Sbjct: 121 DAITVLNNFELPAVKTKGFVEVLNAFNLDKTLVITDT-ANPTLELSARNVKHVKVLGPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N++DI++ +V +++A+ +E + Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVEGALQ 206 >gi|42561269|ref|NP_975720.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|46577155|sp|P61065|RL4_MYCMS RecName: Full=50S ribosomal protein L4 gi|42492767|emb|CAE77362.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320633|gb|ADK69276.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 208 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V ++ G + I++++ ++ ++P Q + + Q R G K K R+EV+ G Sbjct: 1 MKLQVLDIKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P I + KKVR+LA R LS K Sbjct: 61 RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + TK +V + L + + +I + + ++ NI + + Sbjct: 121 NNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|84494785|ref|ZP_00993904.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649] gi|84384278|gb|EAQ00158.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649] Length = 331 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ ++ +V+ Q R G +K R EV G K + QKGTGRAR Sbjct: 11 VDLPAEIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPHRQKGTGRARAG 70 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV-SKECK 135 S + GGG GP P PKK+++ ALR ALSD+ I V+ +LV Sbjct: 71 STRAPHWTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARHGRIHVVASLVQGDAPS 130 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK V L +++ + D + RN+ N++++ +N YD+L +V + Sbjct: 131 TKEAVALLAGLTERKNMLVVLDRSDIVSLKSVRNLENLHVIVADQLNTYDVLCADDVVFT 190 Query: 196 KSAIEAL 202 ++A +A Sbjct: 191 QAAFDAF 197 >gi|312130548|ref|YP_003997888.1| lsu ribosomal protein l4p [Leadbetterella byssophila DSM 17132] gi|311907094|gb|ADQ17535.1| LSU ribosomal protein L4P [Leadbetterella byssophila DSM 17132] Length = 209 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N G++ G + +SE++F ++P Q ++ ++ +R G KSK R+EVA + Sbjct: 1 MEVKVINKTGQETGKTLKLSEEVFGIEPNQHVVWLDVKHYLAAQRQGTHKSKERAEVARS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G ARH S + GGG+ FGP P L KV+ LA + LS + Sbjct: 61 TKKLLRQKGSGGARHGSAKAPIYVGGGRVFGPRPRNYDFKLNLKVKQLARKSVLSARLAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + V+++ KTK V AL LS + + N L+ARNIP ++ V Sbjct: 121 NQLKVVEDFGFDTPKTKAYVEFLNALSLSGKKTLFVVNGSENNLYLSARNIPKTKVVDVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD++ ++L++SAI LE K Sbjct: 181 SVNTYDLVNTDTILLAESAISPLETILK 208 >gi|157964805|ref|YP_001499629.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5] gi|157844581|gb|ABV85082.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5] Length = 209 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ V +L ++ G IS++E+IFA++ + I+ +V+ WQ + G K+K SEV T Sbjct: 3 MKTKVLSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 62 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG A GP LPKKVR L L HALS+K Sbjct: 63 TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 122 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID+L + KT LV + +IDG ++D NF LAA+NI N ++P G Sbjct: 123 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFCVIDGNEVDINFSLAAKNIYNTVIVPQIG 182 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 183 ANVYDIIRHEYVLLSQEAVSVLEERLR 209 >gi|310288023|ref|YP_003939282.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17] gi|311064896|ref|YP_003971622.1| 50S ribosomal protein L4 RplD [Bifidobacterium bifidum PRL2010] gi|309251960|gb|ADO53708.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17] gi|310867216|gb|ADP36585.1| RplD 50S ribosomal protein L4 [Bifidobacterium bifidum PRL2010] Length = 221 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + ++F ++ ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDGKGQATGSVEAPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + ++V+D V+ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K +EA Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAF 209 >gi|256830537|ref|YP_003159265.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028] gi|256579713|gb|ACU90849.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028] Length = 206 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V + + ++ G IS+++DIF ++ + +L ++ + R G K R V Sbjct: 1 MANAKVYDQNRKEVGEISLADDIFQVEVRPEVLHLAVKSHLAKLRSGTVGVKTRGLVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R G GP + K++R LAL+ A+S +F S Sbjct: 61 GKKPWRQKGTGRARAGSSRSPLWRSGAVIHGPQARDYSFKINKQIRKLALKMAISSRFTS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V++ L E KTK V L L ALI+ + D N L+ARN+P I +L Q Sbjct: 121 ENMLVVNKLQFDEIKTKNFVACKDTLGLKKALIVV-AEKDTNLALSARNVPGILVLDPQS 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 INVY+IL+ ++VL + A+ AL++R K Sbjct: 180 INVYEILKYPQMVLDQGAVLALQERLK 206 >gi|320160415|ref|YP_004173639.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1] gi|319994268|dbj|BAJ63039.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1] Length = 208 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V N+ G+ + + E IF ++ + Q R+G +K R+EV+ G Sbjct: 1 MLVDVVNMQGQKVSSVELPESIFEAPIYIDLMHQAYVRQMANARLGTHDTKTRNEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + G K P P V +P+K+R ALR ALS K N Sbjct: 61 RKPWRQKGTGRARQGSTRSPVWAKGAKVHTPHPRSYVQLMPRKMRRAALRSALSVKAAEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+D L E KT+++ L D S ++I + + RN+P+ +L Sbjct: 121 AIVVVDQLTLPEAKTRHMAQALNTLVGDASALVLIPEKEAYEGVIRSTRNLPDAKILLAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N+ D+L K+V+ +A++ + Sbjct: 181 YLNIRDLLMFDKVVMPLAALDVI 203 >gi|197117324|ref|YP_002137751.1| 50S ribosomal protein L4 [Geobacter bemidjiensis Bem] gi|253701921|ref|YP_003023110.1| 50S ribosomal protein L4 [Geobacter sp. M21] gi|226730668|sp|B5EFQ1|RL4_GEOBB RecName: Full=50S ribosomal protein L4 gi|259491560|sp|C6E4Q6|RL4_GEOSM RecName: Full=50S ribosomal protein L4 gi|197086684|gb|ACH37955.1| ribosomal protein L4 [Geobacter bemidjiensis Bem] gi|251776771|gb|ACT19352.1| ribosomal protein L4/L1e [Geobacter sp. M21] Length = 207 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ G I + + +F ++ ++ ++ Q +R G K R+ VA + Sbjct: 1 MAKLDVFDIKKAKVGEIELDDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRALVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + Q+ GGG AFGP P ++ KK R ALR ALS + Sbjct: 61 GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQPKDYNLSMNKKARKAALRSALSMLYKK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++L KTK V A +L L+I +L+ARN+ ++ +L +G Sbjct: 121 DAITVVNSLELPSIKTKAFVEVLTAFNLDKTLVITDTATP-TLELSARNVKHVKVLGPEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N++DI++ +V +++A+ +E + Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVEGALQ 206 >gi|220906720|ref|YP_002482031.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7425] gi|254803729|sp|B8HMQ5|RL4_CYAP4 RecName: Full=50S ribosomal protein L4 gi|219863331|gb|ACL43670.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7425] Length = 210 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ +++ G + G ++ + + I+ R LR Q R G + +K R+EV Sbjct: 1 MVACVIKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + K R LALR AL S Sbjct: 61 GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALIS--RS 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 + ++V+++ KTK L + L+I + D L+ARNI + L Sbjct: 119 DSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQD-TIYLSARNIATVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L +V + A+ +++ + Sbjct: 178 IQATSLNVFDLLNADWIVATVEALGKIQEVY 208 >gi|86739296|ref|YP_479696.1| 50S ribosomal protein L4 [Frankia sp. CcI3] gi|109893595|sp|Q2JFH5|RL4_FRASC RecName: Full=50S ribosomal protein L4 gi|86566158|gb|ABD09967.1| LSU ribosomal protein L4P [Frankia sp. CcI3] Length = 245 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V +G + G + + +F + ++ +V+ Q R G +K R EV G Sbjct: 15 TVAVHAPNGGEGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGR 74 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N Sbjct: 75 KPYRQKGTGRARQGSLRAPQFTGGGTVHGPTPRRYDQRTPKKMKAAALRGALSDRARNNR 134 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ +LVS + TK VT R + + +++ + D + RN+ ++LL + Sbjct: 135 VHVVSSLVSGETPSTKSAVTALRTIADTRRVLVVASRSDELTWKSLRNVAAVHLLDPGQL 194 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L +V + A+ A R Sbjct: 195 NTYDVLVSDDVVFIEDALAAFLAR 218 >gi|298345471|ref|YP_003718158.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063] gi|315656194|ref|ZP_07909085.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235532|gb|ADI66664.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063] gi|315493196|gb|EFU82796.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 214 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 2/201 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K Sbjct: 7 VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + I Sbjct: 67 PWRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+ + KE TK + +D ALI+ ++D L+ N+ + L V + Sbjct: 127 HVLSDFGVKETPSTKAAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S +A+++ Sbjct: 187 NTYDVLANDDVVFSATALDSF 207 >gi|288929339|ref|ZP_06423184.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329441|gb|EFC68027.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 209 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G + +++ IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L L ++ +++N L+ARN+ ++ Sbjct: 121 NAIIVVEDFEMAAPKTKEYVNIVKNLQLGERKSLLLLPNVNKNVYLSARNLQRSEVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++ ++EA+ Sbjct: 181 ALNAYKVLNADVLVITEKSLEAI 203 >gi|161349383|ref|ZP_02096767.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177'] gi|161830071|ref|YP_001596186.1| 50S ribosomal protein L4 [Coxiella burnetii RSA 331] gi|46577232|sp|Q83ES3|RL4_COXBU RecName: Full=50S ribosomal protein L4 gi|189029499|sp|A9NAM5|RL4_COXBR RecName: Full=50S ribosomal protein L4 gi|161761938|gb|ABX77580.1| ribosomal protein L4 [Coxiella burnetii RSA 331] gi|164601579|gb|EDQ95170.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177'] Length = 205 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ G Sbjct: 1 MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L E KT+ L + L+L N LII DRN LA+RN+ +++ + Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALHV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ LE+R Sbjct: 180 DPVSLVAAENIVVTVDAVKRLEERL 204 >gi|139438581|ref|ZP_01772097.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC 25986] gi|133776120|gb|EBA39940.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N +G+ ++ +++ ++P ++ +++ Q R G +KGRSEV+ Sbjct: 1 MAKFEVKNSEGKKVAEAELAAEVYGIEPNIHVMHHIVKCQMASWRQGTQSAKGRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +Q+R GG F P P + K LA+R ALS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAAQWRHGGVVFAPKPRSYAKRMNNKEVKLAMRSALSAKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++D+ ++ TK V +AL L L I D N L+ RNIP ++ Sbjct: 121 GELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVRDEDVNAYLSFRNIPKTFIITAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 N YD++ + +++ + Sbjct: 181 EANTYDLVNNNAVLMPADIAAHFGEVL 207 >gi|260549839|ref|ZP_05824055.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624] gi|293610825|ref|ZP_06693125.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024] gi|260407089|gb|EEX00566.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624] gi|292827169|gb|EFF85534.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024] gi|325123603|gb|ADY83126.1| 50S ribosomal protein L4 [Acinetobacter calcoaceticus PHEA-2] Length = 200 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|113869430|ref|YP_727919.1| 50S ribosomal protein L4 [Ralstonia eutropha H16] gi|123032610|sp|Q0K620|RL4_RALEH RecName: Full=50S ribosomal protein L4 gi|113528206|emb|CAJ94551.1| LSU ribosomal protein L4 [Ralstonia eutropha H16] Length = 206 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ + S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQIGAGVDASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFTQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+P++ ++ + Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMGLDSVLIITDS-LDENLYLASRNLPHVAVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|270294751|ref|ZP_06200952.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20] gi|270273998|gb|EFA19859.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20] Length = 208 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ + Sbjct: 121 NAVVVVEDFSFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLDAGVVVFAESALSAI 203 >gi|119358190|ref|YP_912834.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides DSM 266] gi|166234653|sp|A1BJ33|RL4_CHLPD RecName: Full=50S ribosomal protein L4 gi|119355539|gb|ABL66410.1| LSU ribosomal protein L4P [Chlorobium phaeobacteroides DSM 266] Length = 208 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + +++E+IF ++ + + ++ KR G K+K R++V Sbjct: 1 MELKVLNTSGTETGEVVTLNEEIFGVEVSEHAMYLDVKSILANKRQGTHKAKTRAQVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKLLARRSALSAKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+VI++ KTK + + L L +++ + D + RNIP +N++ Sbjct: 121 GKILVIEDFRLDAIKTKPVAEILKNLGLEQKKILMLTPEYDMIIARSGRNIPVLNIMTAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ YDIL S ++ K+A+ +ED Sbjct: 181 KVSTYDILNSSAILFQKTALTKIEDTL 207 >gi|212716610|ref|ZP_03324738.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM 16992] gi|212660314|gb|EEB20889.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM 16992] Length = 221 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G + +IF ++ + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGNATGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|42524374|ref|NP_969754.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100] gi|46576695|sp|P61061|RL4_BDEBA RecName: Full=50S ribosomal protein L4 gi|39576583|emb|CAE80747.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100] Length = 209 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 2/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V N E G + ++ D+F ++ +L V++WQ +R G +K + V+ Sbjct: 1 MATVNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG AFGP P LPKKVR L L ALS Sbjct: 61 GKKPFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D++ S+ KT L R +A L A+++D +D F A++N+P PV+G Sbjct: 121 GKLFIVDSMASE-GKTAELNKRLQAFGLKKAVLVDSV-VDDKFNRASKNLPTFKYFPVEG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NV+D+L+ V++K ++ + DR Sbjct: 179 LNVFDLLKYDAAVITKDSVAKIVDR 203 >gi|171741272|ref|ZP_02917079.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC 27678] gi|283455367|ref|YP_003359931.1| 50S ribosomal protein L4 [Bifidobacterium dentium Bd1] gi|306823567|ref|ZP_07456942.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium ATCC 27679] gi|309802989|ref|ZP_07697090.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022] gi|171276886|gb|EDT44547.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC 27678] gi|283102001|gb|ADB09107.1| rplD 50S ribosomal protein L4 [Bifidobacterium dentium Bd1] gi|304553274|gb|EFM41186.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium ATCC 27679] gi|308220456|gb|EFO76767.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + +IF ++ + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDKQGKAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D V++ TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVAEAPSTKAAIAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|119025340|ref|YP_909185.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703] gi|154486748|ref|ZP_02028155.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis L2-32] gi|166234637|sp|A1A070|RL4_BIFAA RecName: Full=50S ribosomal protein L4 gi|118764924|dbj|BAF39103.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703] gi|154084611|gb|EDN83656.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis L2-32] Length = 221 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G+ G + +IF ++ + ++ +V+ Q R G +K R Sbjct: 4 VTLNVTDNQGKATGTVDAPAEIFGFSAEEVQSRIPLIHQVVIAQLAAARQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ AL++ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D VS+ TK V + + + + + N L+ RNIP ++ + Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +A Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209 >gi|78189806|ref|YP_380144.1| 50S ribosomal protein L4 [Chlorobium chlorochromatii CaD3] gi|109893584|sp|Q3APH4|RL4_CHLCH RecName: Full=50S ribosomal protein L4 gi|78172005|gb|ABB29101.1| LSU ribosomal protein L4P [Chlorobium chlorochromatii CaD3] Length = 208 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + + +DIF ++ + + ++ KR G K+K RSEV Sbjct: 1 MELKVLNTAGTETGEVVILRDDIFGIEISEHAMYLDVKSILANKRQGTHKAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S GGG FGP P + KKV+ LA R ALS K + Sbjct: 61 GKKPFRQKGTGNARQGSSRSPIHVGGGTIFGPQPHTYEQKVNKKVKLLARRSALSAKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+D+ KTK + L L ++ + D + RNI + ++ Sbjct: 121 GKIVVVDDFRFDAIKTKPFADILKNLGLDAKKTLLLMPEYDMVVNRSGRNIAKLEIMTAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL + L++ KSA++ +++ Sbjct: 181 KASTYDILYSNTLLVQKSALKTIDETL 207 >gi|167587771|ref|ZP_02380159.1| ribosomal protein L4/L1e [Burkholderia ubonensis Bu] Length = 206 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLESVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|189029498|sp|A9KD30|RL4_COXBN RecName: Full=50S ribosomal protein L4 Length = 205 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V + D ++ ++V++ F + ++G++ +V+ R G K R EV+ +G Sbjct: 1 MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +R GG AF P + +K+ A+ LS+ Sbjct: 61 AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L E KT+ L + L+L N LII DRN LA+RN+ +++ + Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALHV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ LE+R Sbjct: 180 DPVSLVAAENIVVTVDAVKRLEERL 204 >gi|83319335|ref|YP_424659.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110059|sp|P10135|RL4_MYCCT RecName: Full=50S ribosomal protein L4 gi|83283221|gb|ABC01153.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + G + I++++ ++ ++P Q + + Q R G K K R+EV+ G Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P I + KKVR+LA R LS K Sbjct: 61 RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + TK +V + L + + +I + + ++ NI + + Sbjct: 121 NNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|262280224|ref|ZP_06058008.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202] gi|299768667|ref|YP_003730693.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1] gi|262258002|gb|EEY76736.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202] gi|298698755|gb|ADI89320.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1] Length = 200 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSTRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAIAAPKTKELLAKLGDLNAARALIVTEA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|329962268|ref|ZP_08300274.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057] gi|328530376|gb|EGF57253.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057] Length = 208 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V + L +S L++ + ++N L+ARN+ N+ + Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++S + A+ Sbjct: 181 GLNTYRVLDAGVVVLAESTLSAI 203 >gi|116624201|ref|YP_826357.1| 50S ribosomal protein L4 [Candidatus Solibacter usitatus Ellin6076] gi|122253083|sp|Q01W93|RL4_SOLUE RecName: Full=50S ribosomal protein L4 gi|116227363|gb|ABJ86072.1| LSU ribosomal protein L4P [Candidatus Solibacter usitatus Ellin6076] Length = 208 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L+ + + +++D+F + Q +L +R R G +K R EV+ + Sbjct: 1 MPTVDVVDLNNQVVSSVELADDVFGAEVNQSLLYEAVRQYQASLRAGTHATKVRREVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +R G GP P + LPKK+ ALR ALS K Sbjct: 61 GKKLWKQKGTGRARIGSVRSPLWRHGATVHGPQPRDYAYKLPKKMLLGALRSALSAKVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ V+ N + KTK + L+ +++ + +RN +L RN+ + LL + Sbjct: 121 GELKVVQNFNFSDHKTKNAMGALSKLEAGRTVLVVDNEDNRNLELGIRNLKGVTLLATRE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L +++S++A + Sbjct: 181 VNPYHLLGHKSVLISEAAARKFSEAL 206 >gi|229496144|ref|ZP_04389864.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis ATCC 35406] gi|229316722|gb|EEN82635.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis ATCC 35406] Length = 209 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G + + + +F ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVSVYNVKGEDTGRKVVLDDAVFGIEPNDHAIYLAVKLYRANQRQGTHKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK+ LA R ALS K + Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGARVFGPRPRSYSFKLNKKLVRLARRSALSYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I V++ KTK V AL L + + N L+ARN+P+ + Sbjct: 121 QEIKVVEAFDFAAPKTKDFVALTSALGLAGKKTLFVMNNIPANVYLSARNVPSARIANAV 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N Y +L ++LV ++ AI + FK Sbjct: 181 SLNTYSVLDATQLVFTEEAIATANEMFK 208 >gi|300114735|ref|YP_003761310.1| 50S ribosomal protein L4/l1e [Nitrosococcus watsonii C-113] gi|299540672|gb|ADJ28989.1| ribosomal protein L4/L1e [Nitrosococcus watsonii C-113] Length = 206 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V++L + G + +S+ +FA + ++ +V+ + R G K RSEV Sbjct: 1 MELPVQSLSKNSETGTVQLSDAVFAQHFNESLIHQVITAYLAKARAGTRAHKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGGK F P + KK+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPGDYSQKVNKKMYRAAMRSILSELVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + ++D ++ + KTK L +++ N L++ + DRN +L+ARNIP + + V Sbjct: 121 DRLRMVDKIILSKPKTKDLAKLLKSITWRNVLVVV-AEDDRNLELSARNIPTVAISNVGR 179 Query: 181 INVYDILRCSKLVLSKSAIEALE 203 ++ +++R +++++ AI E Sbjct: 180 VSPVELIRFDGVLITEDAIRCFE 202 >gi|209165345|gb|ACI41234.1| ribosomal protein L4 [Mycobacterium bolletii] gi|209165349|gb|ACI41236.1| ribosomal protein L4 [Mycobacterium abscessus] Length = 199 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 1/193 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G I + ++F +L +V+ Q R G +K R V+ G K Y QKGT Sbjct: 1 GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+ + ALR ALSD+ + I + LV Sbjct: 61 GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120 Query: 131 S-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + +E TK + + L++ + D + RN+PN+++L +N YD+L+ Sbjct: 121 AGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTYDVLKA 180 Query: 190 SKLVLSKSAIEAL 202 +V S A+ Sbjct: 181 DDVVFSVEALNGF 193 >gi|325529679|gb|EGD06542.1| 50S ribosomal protein L4 [Burkholderia sp. TJI49] Length = 206 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDILLEAPKTKLLADKFKAMGLESVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|156312293|ref|XP_001617803.1| hypothetical protein NEMVEDRAFT_v1g156663 [Nematostella vectensis] gi|156195877|gb|EDO25703.1| predicted protein [Nematostella vectensis] Length = 209 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S ++F ++P + ++ KR G KSK R+E+ + Sbjct: 1 MKVAVLDITGKDTGRKVELSSEVFGIEPNSHAIYLDVKQHLANKRQGTHKSKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSTQAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++V++N KTK V +AL L N + + + N L++RN+ + ++ Sbjct: 121 NNLVVVENFDFDAPKTKNFVNVLKALGLENKKSLFVLAESNNNVYLSSRNLKSSKVVNAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y +L +K+V + AIE +E F Sbjct: 181 ELSTYSVLNANKVVFMEGAIEGVEANF 207 >gi|184200263|ref|YP_001854470.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201] gi|183580493|dbj|BAG28964.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201] Length = 206 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 94/186 (50%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF + +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 8 VELPAEIFDAQTNVALLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 67 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S GGG GP P PKK+++ ALR ALSD+ + I V+ L E T Sbjct: 68 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVVAELGGAEPST 127 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K R++ L++ + + N L+ RN+ N++ + +N YD+L +V +K Sbjct: 128 KAAKQALRSISERKNLLVVLGRGEDNAALSVRNLVNVHAVYADQLNTYDVLVSDDVVFTK 187 Query: 197 SAIEAL 202 +A E+ Sbjct: 188 AAYESF 193 >gi|315655880|ref|ZP_07908778.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333] gi|315489944|gb|EFU79571.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333] Length = 214 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 2/201 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K Sbjct: 7 VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + I Sbjct: 67 PWRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+ + KE TK + +D ALI+ ++D L+ N+ + L V + Sbjct: 127 HVLSDFGVKETPSTKVAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S +A+++ Sbjct: 187 NTYDVLANDDVVFSATALDSF 207 >gi|269219005|ref|ZP_06162859.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212116|gb|EEZ78456.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 215 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 1/196 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V ++ G+ G + ++F ++ ++ +V+ Q R G +K R EV+ G K Sbjct: 8 DVYDVTGKVTGSFELPAELFDVEVNIPLIHQVVNAQLAAARQGTHSTKTRGEVSGGGKKP 67 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTGRAR S QF GGG GP P PKK+ + AL +LSD+ + I Sbjct: 68 FKQKGTGRARQGSIRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALCQSLSDRARNGRIH 127 Query: 125 VIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 V++ ++ TK + R + A ++ + D +L+ RN P +++ V +N Sbjct: 128 VVEAFLEGEKPSTKAALGLLRKVIDDRAALVAVSRGDDLTRLSLRNAPEASVIFVDQLNS 187 Query: 184 YDILRCSKLVLSKSAI 199 YD+L +V ++SA+ Sbjct: 188 YDVLVADDVVFTESAL 203 >gi|330430100|gb|AEC21434.1| 50S ribosomal protein L4 [Pusillimonas sp. T7-7] Length = 206 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ ++ + IF + ++ +++ R G KGR V ++ Sbjct: 1 MELKLLNDQGQSSATVAAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKGRDTVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ LR LS Sbjct: 61 KKPWRQKGTGRARSGMTSSPIWRGGGRAFPNSPDENFSQKVNKKMYRAGLRAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+D V KTK + +++ L + LII LD N LA RN+P++ ++ + Sbjct: 121 DRIAVVDTFVLDAPKTKLAADKLKSMGLESVLIITDV-LDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLIHYKKVLITKPAIAQLEEML 205 >gi|146308922|ref|YP_001189387.1| 50S ribosomal protein L4 [Pseudomonas mendocina ymp] gi|166199847|sp|A4XZ89|RL4_PSEMY RecName: Full=50S ribosomal protein L4 gi|145577123|gb|ABP86655.1| LSU ribosomal protein L4P [Pseudomonas mendocina ymp] Length = 200 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VS+ F + + ++ + + R G K RS+V+ G + + Sbjct: 3 LNVNGAQA--IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F L KK+ ALR L++ ++ ++V+ Sbjct: 61 QKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ + KTK L+++ L L++ LI+ +D+N LAARN+P++++ VQG + + Sbjct: 121 EDFAVEAPKTKALLSKLNGLGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYEKVLVTVSAVKKFEELL 199 >gi|330997364|ref|ZP_08321215.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841] gi|329570738|gb|EGG52454.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841] Length = 209 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G + +++ IF ++P ++ ++ +R G +KSK RSEV+ + Sbjct: 1 MEVSVLNIKGEDTGRKVLLNDSIFNIEPNDHVIYLDVKQYLANQRQGTAKSKERSEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + L + + ++N L+ARNI +N++ Sbjct: 121 NAIVVVEDFTMEVPKTKQFIEIINNLKVGGKKALFVLPGANKNVYLSARNIERVNVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L +V+++++++ +++ Sbjct: 181 ALNTYKVLNADVMVVTENSLKVVDEIL 207 >gi|294085959|ref|YP_003552719.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665534|gb|ADE40635.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum IMCC1322] Length = 258 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V+ LD + G I+V + +FA+ P+ +LARV++WQ ++R G K K RSEVA T Sbjct: 54 MKLNVKTLDNKAAGDITVDDTVFAVAPRADLLARVVKWQLAKRRAGSHKVKSRSEVARTT 113 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KM+ QKGTGRARH + SV QFRGGG GPV HALPKKVR LR ALS K Sbjct: 114 AKMFRQKGTGRARHGAASVVQFRGGGVVHGPVVRDHGHALPKKVRRAGLRSALSSKASEG 173 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D LVSK KT L + L NALII G +LD F AA NIP +++LP QGI Sbjct: 174 KLIVLDKLVSK-GKTAALRAQLSKLGAENALIIGGEELDAGFVNAASNIPLVDVLPQQGI 232 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR L+LSK A LE+R K Sbjct: 233 NVYDILRRDVLILSKDAAAHLEERLK 258 >gi|238025933|ref|YP_002910164.1| 50S ribosomal protein L4 [Burkholderia glumae BGR1] gi|237875127|gb|ACR27460.1| Ribosomal protein L4 [Burkholderia glumae BGR1] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK L +F+A+ L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLSVVEDLTLEAPKTKLLAEKFKAMGLESVLVITDT-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEELL 205 >gi|330505206|ref|YP_004382075.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01] gi|328919492|gb|AEB60323.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01] Length = 200 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 3/200 (1%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 N++G I VS+ F + + ++ + + R G K RS+V+ G + + Sbjct: 3 LNVNGAQA--IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWR 60 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR + +RGGG F L KK+ ALR L++ ++ ++V+ Sbjct: 61 QKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVV 120 Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ KTK L+ + L L++ LI+ +D+N LAARN+P++++ VQG + + Sbjct: 121 EDFAVDAPKTKTLLAKLNGLGLNDVLIVSDA-VDQNLYLAARNLPHVDVRDVQGSDPVSL 179 Query: 187 LRCSKLVLSKSAIEALEDRF 206 + K++++ SA++ E+ Sbjct: 180 IAYEKVLVTVSAVKKFEELL 199 >gi|146298160|ref|YP_001192751.1| 50S ribosomal protein L4 [Flavobacterium johnsoniae UW101] gi|189029503|sp|A5FMY0|RL4_FLAJO RecName: Full=50S ribosomal protein L4 gi|146152578|gb|ABQ03432.1| 50S ribosomal protein L4/L1e [Flavobacterium johnsoniae UW101] Length = 209 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V + +G+D G + +S+ +FA++P + ++ +R G K+K R+EV + Sbjct: 1 MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP P L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSVKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSAFSIKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++I+V+++ + TK + +AL L N + + ++N L++RN+ N++ Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLGESNKNVYLSSRNLKASNVVTSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL + LVL + ++E +E+ Sbjct: 181 ELSTYAILNTNNLVLLEGSLELIEENL 207 >gi|56751875|ref|YP_172576.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|81301040|ref|YP_401248.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 7942] gi|3122743|sp|O24690|RL4_SYNP6 RecName: Full=50S ribosomal protein L4 gi|109893647|sp|Q31L08|RL4_SYNE7 RecName: Full=50S ribosomal protein L4 gi|2446891|dbj|BAA22450.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|56686834|dbj|BAD80056.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301] gi|81169921|gb|ABB58261.1| LSU ribosomal protein L4P [Synechococcus elongatus PCC 7942] Length = 210 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M++ +++ G+ G I+V + + I+ R L Q R G SK RSEV Sbjct: 1 MVDYVIQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P + +K R LALR AL + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTALISRSA- 119 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINL 175 D++V+ KT+ + + L+I D+N +L+ RN+PN+ L Sbjct: 120 -DLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLIT-ADRDQNVELSVRNLPNVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++D+L ++V + +A+E +++ + Sbjct: 178 ITATNLNIFDLLNADRIVSTSAALEKIQEVY 208 >gi|194857837|ref|XP_001969044.1| GG24171 [Drosophila erecta] gi|190660911|gb|EDV58103.1| GG24171 [Drosophila erecta] Length = 296 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + DIFA +P+ I+ + WQ + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDIFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S +GGG GP P + LP R L L LS K +D+ +I+++ Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++L + +++I N A+ ++ +NL+P G+NVY +L+ Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|34541540|ref|NP_906019.1| 50S ribosomal protein L4 [Porphyromonas gingivalis W83] gi|46577171|sp|Q7MTL4|RL4_PORGI RecName: Full=50S ribosomal protein L4 gi|34397857|gb|AAQ66918.1| ribosomal protein L4 [Porphyromonas gingivalis W83] Length = 209 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G + + + IFA++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK+++LA R ALS K + Sbjct: 61 TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYSFKLNKKLKALARRSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ KTK AL + ++ ++++N L+ARN+PN NL+ Sbjct: 121 NEIIVVEDFNFDAPKTKAFKAISAALKVGEKKVLYVLPEVNKNVYLSARNLPNTNLILAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 IN Y +L LVL++ ++ + + FK Sbjct: 181 LINTYTVLASKNLVLTERSVAVVNELFK 208 >gi|260592764|ref|ZP_05858222.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319] gi|260535295|gb|EEX17912.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319] Length = 209 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207 >gi|269122580|ref|YP_003310757.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386] gi|268616458|gb|ACZ10826.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386] Length = 212 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 5/211 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + +DG G + V E+IF +KP + ++ VL + R G + +K R+EV Sbjct: 1 MPVLDIYTIDGTKAGTVDVKEEIFGIKPNKAVMHEVLTAELAEVRQGSASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG + GP P V + KKVR LA+R ALS K Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVSHGPKPRDYVKKVNKKVRKLAIRSALSAKVNK 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGC---QLDRNFQLAARNIPNINL 175 +I++ID ++ KTK ++ + LD++ A L I + + N L+ RNI + Sbjct: 121 GEIIIIDAFELEKPKTKTIIDFSKKLDMAGAKQLYILNDLYIENEYNAYLSIRNIEKSYV 180 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L ++VY +L+ K+++++ A+ +E+ Sbjct: 181 LMPNELSVYWLLKQDKIIMTREALAQIEEVL 211 >gi|437924|emb|CAA79778.1| ribosomal protein L4 [Thermotoga maritima] Length = 235 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRA H S +R GG GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRASHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIID--GCQLDRNFQLAARNIPNINLL 176 N ++V+D+L + KTK L + L LS+ L++ + N +L+ RN+P++ ++ Sbjct: 121 NKLLVLDHLKLERPKTKSLKEILQNLQLSDKKTLMVLPWKEEGYMNVKLSGRNLPDVKVI 180 Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 225 >gi|262377311|ref|ZP_06070535.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145] gi|262307764|gb|EEY88903.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145] Length = 200 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGRKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARNIP+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVTDA-VDENLYLAARNIPHVDVVDAAAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|330815250|ref|YP_004358955.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3] gi|327367643|gb|AEA58999.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGASVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ LR S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLRSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++ L + KTK L +F+A+ L + L+I +D N LA+RN+PN+ ++ + Sbjct: 121 GRLSVVEQLTLEAPKTKLLAEKFKAMGLESVLVITDT-VDENLYLASRNLPNVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEELL 205 >gi|189465419|ref|ZP_03014204.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM 17393] gi|189437693|gb|EDV06678.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM 17393] Length = 208 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G I+++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV++LA + AL+ K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++++++ + KTK V + L +S L++ + ++N L+ARN+ + N+ + Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVESANVQTLS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +V ++SA+ A+ Sbjct: 181 GLNTYRVLNAGVVVFTESALSAI 203 >gi|78186071|ref|YP_374114.1| 50S ribosomal protein L4 [Chlorobium luteolum DSM 273] gi|109893616|sp|Q3B6G0|RL4_PELLD RecName: Full=50S ribosomal protein L4 gi|78165973|gb|ABB23071.1| LSU ribosomal protein L4P [Chlorobium luteolum DSM 273] Length = 208 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + ++ +DIF + + + ++ KR G KSK R+EV Sbjct: 1 MELKVLNTAGAETGEVVTLRDDIFGAEVSEHAIWLDVKSILANKRQGTHKSKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +KV+ LA R A S K Sbjct: 61 GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPTPHGYDQKVNRKVKQLARRSAFSAKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+++++ E KTK + R L L +++ + + RNI +N++ + Sbjct: 121 GRILIVEDFALAEIKTKPVADMLRNLGLDAKKILMLTPDYNMVIARSGRNIEALNIMTAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL ++ K+A++ LE+ Sbjct: 181 KASTYDILNSHTVLFQKTALKKLEETL 207 >gi|78064925|ref|YP_367694.1| 50S ribosomal protein L4 [Burkholderia sp. 383] gi|109893581|sp|Q39KG6|RL4_BURS3 RecName: Full=50S ribosomal protein L4 gi|77965670|gb|ABB07050.1| LSU ribosomal protein L4P [Burkholderia sp. 383] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLAEKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|304391027|ref|ZP_07372979.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325910|gb|EFL93156.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 214 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 2/201 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + G+ G + + ++F L ++ +V+ Q R G +K R +V+ G K Sbjct: 7 VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + I Sbjct: 67 PWRQKGTGRARQGSIRAPQFAGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126 Query: 124 MVIDNLVSKE-CKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 V+ + KE TK + +D ALI+ ++D L+ N+ + L V + Sbjct: 127 HVLSDFGVKETPSTKAAKAALQGVVDNRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S +A+++ Sbjct: 187 NTYDVLANDDVVFSATALDSF 207 >gi|167564416|ref|ZP_02357332.1| 50S ribosomal protein L4 [Burkholderia oklahomensis EO147] gi|167571562|ref|ZP_02364436.1| 50S ribosomal protein L4 [Burkholderia oklahomensis C6786] gi|167838211|ref|ZP_02465070.1| 50S ribosomal protein L4 [Burkholderia thailandensis MSMB43] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLESVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|261338278|ref|ZP_05966162.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum DSM 20093] gi|270276933|gb|EFA22787.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum DSM 20093] Length = 220 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + G G I ++F + ++ +V+ Q +R G +K R Sbjct: 4 VTLNVTDNQGNATGTIEAPAEVFGFTAEEVHAHVPLIHQVVNAQLAARRQGTHATKTRGM 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG FGP P PKK+++ ALR+ LSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D E TK + + + + + + N L+ RNIP ++ + Sbjct: 124 RANNGRVAVVD-FGITEPSTKKALAALNPITENKFTTVVLSRDNINEWLSVRNIPTVHPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204 +N YD++ +V SK EA + Sbjct: 183 FADQLNTYDVVTAQYVVFSKEGYEAFLE 210 >gi|107024302|ref|YP_622629.1| 50S ribosomal protein L4 [Burkholderia cenocepacia AU 1054] gi|115350323|ref|YP_772162.1| 50S ribosomal protein L4 [Burkholderia ambifaria AMMD] gi|116688373|ref|YP_833996.1| 50S ribosomal protein L4 [Burkholderia cenocepacia HI2424] gi|134294444|ref|YP_001118179.1| 50S ribosomal protein L4 [Burkholderia vietnamiensis G4] gi|170700695|ref|ZP_02891690.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10] gi|170731683|ref|YP_001763630.1| 50S ribosomal protein L4 [Burkholderia cenocepacia MC0-3] gi|171318349|ref|ZP_02907507.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5] gi|172059342|ref|YP_001806994.1| 50S ribosomal protein L4 [Burkholderia ambifaria MC40-6] gi|254246596|ref|ZP_04939917.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184] gi|122324265|sp|Q0BJ45|RL4_BURCM RecName: Full=50S ribosomal protein L4 gi|123071806|sp|Q1BRU9|RL4_BURCA RecName: Full=50S ribosomal protein L4 gi|166234641|sp|A0K3M6|RL4_BURCH RecName: Full=50S ribosomal protein L4 gi|166234647|sp|A4JAP1|RL4_BURVG RecName: Full=50S ribosomal protein L4 gi|226730627|sp|B1YRD1|RL4_BURA4 RecName: Full=50S ribosomal protein L4 gi|226730628|sp|B1JU23|RL4_BURCC RecName: Full=50S ribosomal protein L4 gi|105894491|gb|ABF77656.1| LSU ribosomal protein L4P [Burkholderia cenocepacia AU 1054] gi|115280311|gb|ABI85828.1| LSU ribosomal protein L4P [Burkholderia ambifaria AMMD] gi|116646462|gb|ABK07103.1| LSU ribosomal protein L4P [Burkholderia cenocepacia HI2424] gi|124871372|gb|EAY63088.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184] gi|134137601|gb|ABO53344.1| LSU ribosomal protein L4P [Burkholderia vietnamiensis G4] gi|169814925|gb|ACA89508.1| ribosomal protein L4/L1e [Burkholderia cenocepacia MC0-3] gi|170134365|gb|EDT02698.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10] gi|171096427|gb|EDT41326.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5] gi|171991859|gb|ACB62778.1| ribosomal protein L4/L1e [Burkholderia ambifaria MC40-6] Length = 206 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|53720820|ref|YP_109806.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243] gi|53723853|ref|YP_104165.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 23344] gi|67639131|ref|ZP_00438030.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4] gi|76809795|ref|YP_335139.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710b] gi|83721290|ref|YP_443571.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264] gi|121599603|ref|YP_994455.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1] gi|124385301|ref|YP_001027896.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229] gi|126439851|ref|YP_001060749.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668] gi|126448779|ref|YP_001082991.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247] gi|126454667|ref|YP_001068033.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a] gi|134283113|ref|ZP_01769814.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305] gi|167001698|ref|ZP_02267490.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20] gi|167582622|ref|ZP_02375496.1| 50S ribosomal protein L4 [Burkholderia thailandensis TXDOH] gi|167721576|ref|ZP_02404812.1| 50S ribosomal protein L4 [Burkholderia pseudomallei DM98] gi|167740550|ref|ZP_02413324.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 14] gi|167817755|ref|ZP_02449435.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 91] gi|167826152|ref|ZP_02457623.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 9] gi|167847664|ref|ZP_02473172.1| 50S ribosomal protein L4 [Burkholderia pseudomallei B7210] gi|167896236|ref|ZP_02483638.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 7894] gi|167904618|ref|ZP_02491823.1| 50S ribosomal protein L4 [Burkholderia pseudomallei NCTC 13177] gi|167912883|ref|ZP_02499974.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 112] gi|167920843|ref|ZP_02507934.1| 50S ribosomal protein L4 [Burkholderia pseudomallei BCC215] gi|217424680|ref|ZP_03456177.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576] gi|237814144|ref|YP_002898595.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346] gi|242316920|ref|ZP_04815936.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b] gi|254175000|ref|ZP_04881661.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399] gi|254180340|ref|ZP_04886938.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655] gi|254190303|ref|ZP_04896811.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237] gi|254198538|ref|ZP_04904959.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13] gi|254201238|ref|ZP_04907602.1| 50S ribosomal protein L4 [Burkholderia mallei FMH] gi|254206579|ref|ZP_04912930.1| 50S ribosomal protein L4 [Burkholderia mallei JHU] gi|254262086|ref|ZP_04953140.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a] gi|254300579|ref|ZP_04968024.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e] gi|254357117|ref|ZP_04973391.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280] gi|257137646|ref|ZP_05585908.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264] gi|81604183|sp|Q62GK6|RL4_BURMA RecName: Full=50S ribosomal protein L4 gi|81607670|sp|Q63Q12|RL4_BURPS RecName: Full=50S ribosomal protein L4 gi|109893580|sp|Q3JMR4|RL4_BURP1 RecName: Full=50S ribosomal protein L4 gi|109893582|sp|Q2SU28|RL4_BURTA RecName: Full=50S ribosomal protein L4 gi|166234642|sp|A3MRV5|RL4_BURM7 RecName: Full=50S ribosomal protein L4 gi|166234643|sp|A2S7H7|RL4_BURM9 RecName: Full=50S ribosomal protein L4 gi|166234644|sp|A1V8A2|RL4_BURMS RecName: Full=50S ribosomal protein L4 gi|166234645|sp|A3P0B2|RL4_BURP0 RecName: Full=50S ribosomal protein L4 gi|166234646|sp|A3NEH8|RL4_BURP6 RecName: Full=50S ribosomal protein L4 gi|52211234|emb|CAH37223.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243] gi|52427276|gb|AAU47869.1| ribosomal protein L4 [Burkholderia mallei ATCC 23344] gi|76579248|gb|ABA48723.1| ribosomal protein L4/L1 family [Burkholderia pseudomallei 1710b] gi|83655115|gb|ABC39178.1| ribosomal protein L4/L1 family [Burkholderia thailandensis E264] gi|121228413|gb|ABM50931.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1] gi|124293321|gb|ABN02590.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229] gi|126219344|gb|ABN82850.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668] gi|126228309|gb|ABN91849.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a] gi|126241649|gb|ABO04742.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247] gi|134245308|gb|EBA45401.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305] gi|147747132|gb|EDK54208.1| 50S ribosomal protein L4 [Burkholderia mallei FMH] gi|147752121|gb|EDK59187.1| 50S ribosomal protein L4 [Burkholderia mallei JHU] gi|148026181|gb|EDK84266.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280] gi|157810619|gb|EDO87789.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e] gi|157937979|gb|EDO93649.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237] gi|160696045|gb|EDP86015.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399] gi|169655278|gb|EDS87971.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13] gi|184210879|gb|EDU07922.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655] gi|217392136|gb|EEC32161.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576] gi|237505978|gb|ACQ98296.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346] gi|238519675|gb|EEP83144.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4] gi|242140159|gb|EES26561.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b] gi|243062595|gb|EES44781.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20] gi|254220775|gb|EET10159.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|209165347|gb|ACI41235.1| ribosomal protein L4 [Mycobacterium massiliense] Length = 199 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 1/193 (0%) Query: 11 GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70 G+ G I + ++F +L +V+ Q R G +K R V+ G K Y QKGT Sbjct: 1 GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60 Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+ + ALR ALSD+ + I + LV Sbjct: 61 GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120 Query: 131 S-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + +E TK + + L++ + D + RN+PN+++L +N YD+L+ Sbjct: 121 AGQEPSTKSAKSFLAEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTYDVLKA 180 Query: 190 SKLVLSKSAIEAL 202 +V S A+ Sbjct: 181 DDVVFSVEALNGF 193 >gi|269958585|ref|YP_003328372.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel] gi|269848414|gb|ACZ49058.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel] Length = 208 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 112/205 (54%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N+ E G + ++ +F ++P++ +L V+ WQ ++R G K++ S+V T Sbjct: 1 MEVNVVNIKNEVVGQLELNASVFGVQPRRDVLRDVVDWQLAKRRAGTHKTRCISDVRGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K + Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ KT F + ++ + A RN+PN++LL GI Sbjct: 121 KLVVLDDSGLVLEKTADARAAFGNFGAYGSYLVVAEGYEDKVACACRNLPNVDLLKYAGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ A++ LE R Sbjct: 181 NVLDILRHDCVILTVGAVKCLESRL 205 >gi|206558642|ref|YP_002229402.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315] gi|226730629|sp|B4E5C1|RL4_BURCJ RecName: Full=50S ribosomal protein L4 gi|198034679|emb|CAR50546.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVIAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++++ + KTK L +F+ + L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMGLDSVLIITDT-VDENLYLASRNLPHVAIVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|167620736|ref|ZP_02389367.1| 50S ribosomal protein L4 [Burkholderia thailandensis Bt4] Length = 206 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNSNGQEGAAVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|297571934|ref|YP_003697708.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595] gi|296932281|gb|ADH93089.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595] Length = 215 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ + + G G ++ + F L+ ++ +V+ Q R G K+K R EV G Sbjct: 5 KVDILDTTGAKAGSATLPAESFDLEINIPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGV 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG GP P PKK+ + ALR ALSD+ + Sbjct: 65 KPFKQKGTGRARQGSIRAPHFTGGGTVHGPRPRDYSQRTPKKMIAAALRQALSDRARNGR 124 Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ + S TK + + ++ + + L+ RN+ + L V + Sbjct: 125 IHVVTGIVDSATPSTKAALNLVSKVAEQRGALVVLERNEETAVLSLRNLQEAHTLYVDQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L ++ +++A++ Sbjct: 185 NAYDVLVADDVIFTQAALDTF 205 >gi|257095039|ref|YP_003168680.1| 50S ribosomal protein L4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047563|gb|ACV36751.1| ribosomal protein L4/L1e [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 206 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G++ + S+ +F + + ++ +VL R G K R +V +T Sbjct: 1 MELKLINEQGQEASRLEASDALFGREYNEALVHQVLVAYQANARSGNRAQKDRQDVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P L +K+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPIWRGGGRVFPSSPDENFSQKLNRKMYRAGMAAILSQLVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D L KTK + + + + L+I LD N LAARN+PN+ +L V Sbjct: 121 DRLAVVDTLSIAAPKTKLFAAKIKDMGYESVLVITD-DLDENVFLAARNLPNVLVLEVSQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K A+ E+ Sbjct: 180 TDPVSLIHFPKVLVTKGALAKFEEIL 205 >gi|73542862|ref|YP_297382.1| 50S ribosomal protein L4 [Ralstonia eutropha JMP134] gi|194291021|ref|YP_002006928.1| 50S ribosomal protein l4 [Cupriavidus taiwanensis LMG 19424] gi|109893626|sp|Q46WE5|RL4_RALEJ RecName: Full=50S ribosomal protein L4 gi|226730647|sp|B3R7S2|RL4_CUPTR RecName: Full=50S ribosomal protein L4 gi|72120275|gb|AAZ62538.1| LSU ribosomal protein L4P [Ralstonia eutropha JMP134] gi|193224856|emb|CAQ70867.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Cupriavidus taiwanensis LMG 19424] Length = 206 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQVGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+P++ ++ + Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMGLDSVLIITDS-LDENLYLASRNLPHVAVVEPRQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|262373520|ref|ZP_06066798.1| ribosomal protein L4/L1 [Acinetobacter junii SH205] gi|262311273|gb|EEY92359.1| ribosomal protein L4/L1 [Acinetobacter junii SH205] Length = 200 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|15617117|ref|NP_240330.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682424|ref|YP_002468808.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11134325|sp|P57590|RL4_BUCAI RecName: Full=50S ribosomal protein L4 gi|254803722|sp|B8D848|RL4_BUCAT RecName: Full=50S ribosomal protein L4 gi|25294987|pir||H84990 50S ribosomal protein L4 [imported] - Buchnera sp. (strain APS) gi|10039182|dbj|BAB13216.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622157|gb|ACL30313.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086245|gb|ADP66327.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086822|gb|ADP66903.1| 50S ribosomal protein L4 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087409|gb|ADP67489.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087904|gb|ADP67983.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 201 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+++ V+SVSE IFA + ++ +V+ S R G K R+EV+ +G Sbjct: 1 MELVVKDVQN----VLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 57 RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V +N KTK LV + + ++L N LI+ ++D N LA+RN+ ++++ V I Sbjct: 117 RLIVFENFSLDAPKTKLLVQKLKDINLKNVLIVT-NKIDNNLFLASRNLYSVDVKDVHSI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEEIL 200 >gi|187251821|ref|YP_001876303.1| 50S ribosomal protein L4/L1e [Elusimicrobium minutum Pei191] gi|186971981|gb|ACC98966.1| Ribosomal protein L4/L1e [Elusimicrobium minutum Pei191] Length = 211 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V N+ G+++G ++ E +F+ KP L V+ +R G + K R+EV+ TG Sbjct: 1 METKVFNIQGKEEGTTALPEVLFSAKPNPTFLHEVVTAFLANQRRGTADVKTRAEVSGTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRARH S +R GG AFGP P LP + R AL ALS K+ Sbjct: 61 KKPWKQKGTGRARHGSMRSPIWRHGGVAFGPTPRSFRQYLPAQKRRAALIQALSAKYAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V ++ KE KTK L T +A++ L++ + D L+ARNI ++L+P Sbjct: 121 NVIVFNDGGIKESKTKVLATALKAMEAGRKPLVLTTEKTDNKVFLSARNIAGLSLIPASD 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L SK++++K A+E L+ F Sbjct: 181 VNAYVVLNSSKIIITKDALETLKSTF 206 >gi|161523430|ref|YP_001578442.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|189351797|ref|YP_001947425.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|221201566|ref|ZP_03574604.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M] gi|221207359|ref|ZP_03580369.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2] gi|221213497|ref|ZP_03586472.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1] gi|254253516|ref|ZP_04946834.1| Ribosomal protein L4 [Burkholderia dolosa AUO158] gi|226730630|sp|A9ADJ4|RL4_BURM1 RecName: Full=50S ribosomal protein L4 gi|124896125|gb|EAY70005.1| Ribosomal protein L4 [Burkholderia dolosa AUO158] gi|160340859|gb|ABX13945.1| ribosomal protein L4/L1e [Burkholderia multivorans ATCC 17616] gi|189335819|dbj|BAG44889.1| large subunit ribosomal protein L4 [Burkholderia multivorans ATCC 17616] gi|221166949|gb|EED99420.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1] gi|221172947|gb|EEE05384.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2] gi|221178382|gb|EEE10791.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M] Length = 206 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ V++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++V + KTK L +F+A+ L + LII +D N LA+RN+P++ ++ + Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLIITDT-VDENLYLASRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205 >gi|315606503|ref|ZP_07881518.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC 33574] gi|315251909|gb|EFU31883.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC 33574] Length = 210 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+E+SV ++ G++ G ++++E I+ L+P + +L ++ +R G +KSK RSE+ Sbjct: 1 MMEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEING 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K+ QKG G AR GGG+ FGP P L KKV+ LA + ALSDK Sbjct: 61 STRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPV 178 N I+V+++ + KTK + + L + ++ ++N L+ARN+ ++P Sbjct: 121 ENAIVVVEDFDIETPKTKDFINIAKNLKVDGRKTLLLLPTANKNVYLSARNLQRTEVMPA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++SA++ +++ Sbjct: 181 AMLNSYKVLNADVLVIAESALKVIDEIL 208 >gi|33594752|ref|NP_882395.1| 50S ribosomal protein L4 [Bordetella parapertussis 12822] gi|33599023|ref|NP_886583.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50] gi|46576756|sp|Q7W2F5|RL4_BORPA RecName: Full=50S ribosomal protein L4 gi|46576763|sp|Q7WRC4|RL4_BORBR RecName: Full=50S ribosomal protein L4 gi|33564828|emb|CAE39771.1| 50S ribosomal protein L4 [Bordetella parapertussis] gi|33575069|emb|CAE30532.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50] Length = 205 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204 >gi|148260938|ref|YP_001235065.1| 50S ribosomal protein L4 [Acidiphilium cryptum JF-5] gi|326404336|ref|YP_004284418.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301] gi|166234626|sp|A5FZW4|RL4_ACICJ RecName: Full=50S ribosomal protein L4 gi|146402619|gb|ABQ31146.1| LSU ribosomal protein L4P [Acidiphilium cryptum JF-5] gi|325051198|dbj|BAJ81536.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301] Length = 216 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + LD G + E+ FA P+ I+ARV+ WQ ++R G K KG EV+ T Sbjct: 1 MQIDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S QFR GG GPV ++L KKVR L L ALS K Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D V+ KT L + + L L++D +D F A+RN+ I++LPV G Sbjct: 121 KLVVLDT-VAGVSKTSELNVKLKKLGWGRTLVVDAV-VDEGFARASRNLIGIDVLPVVGA 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ L ++ + +E L+ R Sbjct: 179 NVYDILQHDTLAITAAGLEGLKRRL 203 >gi|256390141|ref|YP_003111705.1| 50S ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928] gi|256356367|gb|ACU69864.1| ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928] Length = 217 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF ++ ++ +V+ Q R G K+K R EV+ G K Y QKGTGRAR Sbjct: 6 SVDLPGEIFDVQTNIPLIHQVVVAQLAAARQGTHKTKTRGEVSGGGKKPYRQKGTGRARQ 65 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S QF GGG GPVP PKK+++ ALR ALSD+ ++V+D LV Sbjct: 66 GSTRAPQFAGGGVVHGPVPRDYAQRTPKKMKAAALRGALSDRARDGRVIVVDALVEGATP 125 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK V + + +++ + D + RN+P ++L+ V +N YD+L +V Sbjct: 126 NTKSAVALLKGVTEHKNVLVVLQRTDEVSYKSLRNVPTVHLIDVGQLNTYDVLVNDAVVF 185 Query: 195 SKSAIEAL 202 ++ A + Sbjct: 186 TQGAYDQF 193 >gi|319900925|ref|YP_004160653.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108] gi|319415956|gb|ADV43067.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108] Length = 208 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 115/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ GED G ++++E IF ++P + ++ +R G KSK RSE++ + Sbjct: 1 MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K + Sbjct: 61 TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK + + L +S L++ + ++N L+ARN+ + N+ V Sbjct: 121 NAIVVVEDFTFATPKTKDFIEMTKNLKVSDKKLLVVLPEANKNVYLSARNVKSANVQAVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +VL++SA+ A+ Sbjct: 181 GLNTYRVLDAGIIVLAESALSAI 203 >gi|126643094|ref|YP_001086078.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978] gi|169632351|ref|YP_001706087.1| 50S ribosomal protein L4 [Acinetobacter baumannii SDF] gi|169794595|ref|YP_001712388.1| 50S ribosomal protein L4 [Acinetobacter baumannii AYE] gi|184159597|ref|YP_001847936.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU] gi|213158834|ref|YP_002320832.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057] gi|215482184|ref|YP_002324366.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294] gi|239503233|ref|ZP_04662543.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB900] gi|260557028|ref|ZP_05829245.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606] gi|294839746|ref|ZP_06784429.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013113] gi|294842654|ref|ZP_06787337.1| 50S ribosomal protein L4 [Acinetobacter sp. 6014059] gi|294860424|ref|ZP_06798193.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013150] gi|301345011|ref|ZP_07225752.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB056] gi|301512058|ref|ZP_07237295.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB058] gi|301596105|ref|ZP_07241113.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB059] gi|166234625|sp|A3M982|RL4_ACIBT RecName: Full=50S ribosomal protein L4 gi|226730599|sp|B7GW03|RL4_ACIB3 RecName: Full=50S ribosomal protein L4 gi|226730600|sp|B7IA38|RL4_ACIB5 RecName: Full=50S ribosomal protein L4 gi|226730601|sp|B2HZM1|RL4_ACIBC RecName: Full=50S ribosomal protein L4 gi|226730602|sp|B0VQR9|RL4_ACIBS RecName: Full=50S ribosomal protein L4 gi|226730603|sp|B0V6W9|RL4_ACIBY RecName: Full=50S ribosomal protein L4 gi|126388978|gb|ABO13476.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978] gi|169147522|emb|CAM85383.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter baumannii AYE] gi|169151143|emb|CAO99815.1| 50S ribosomal protein L4, regulates expression of S10 operon [Acinetobacter baumannii] gi|183211191|gb|ACC58589.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU] gi|213057994|gb|ACJ42896.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057] gi|213987315|gb|ACJ57614.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294] gi|260409634|gb|EEX02935.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606] gi|322509507|gb|ADX04961.1| 50S ribosomal protein L4 [Acinetobacter baumannii 1656-2] gi|323519527|gb|ADX93908.1| 50S ribosomal protein L4 [Acinetobacter baumannii TCDC-AB0715] Length = 200 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNAARALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|283768461|ref|ZP_06341373.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219] gi|283104853|gb|EFC06225.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219] Length = 209 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N + + + +S+ +F+++P Q ++ + R G + RS V+ T Sbjct: 1 MAKMEVFNQEAKSVKTVEISDAVFSIEPNQQVMFDAVLAYQAGLRQGTHSTLTRSFVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+R G AFGP P +KVR LALR ALS+K Sbjct: 61 GKKPFRQKGTGRARQGSTRAIQWRHGAVAFGPHPRKYGVKTNRKVRRLALRSALSEKVLE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 ++ ++I+NL +E KTK V +A ++D + N ++ RN+PN + V Sbjct: 121 SNFVLIENLNFEEMKTKKAVALLKAFGFDRKTLFVVDASEDFVNAYISMRNLPNALVTTV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD++ +K+V ++ A E + F Sbjct: 181 FDLNVYDLVNANKVVFTEKAAEKAGEVF 208 >gi|28572368|ref|NP_789148.1| 50S ribosomal protein L4 [Tropheryma whipplei TW08/27] gi|46577236|sp|Q83I77|RL4_TROW8 RecName: Full=50S ribosomal protein L4 gi|28410499|emb|CAD66885.1| 50s ribosomal protein L4 [Tropheryma whipplei TW08/27] Length = 248 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 1/198 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +V ++ G G + + +F P ++ +V+ Q R G K+K R+EV+ +G K Sbjct: 6 TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG GPVP VH PKK+ AL L+++ + + Sbjct: 66 FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRSYVHRTPKKMIKAALAGCLTNRARAGRVH 125 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++D+ +T F+ LS+ L++ D + RNIP + L+ V +N Y Sbjct: 126 IVDSFG-DTPSVADALTLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184 Query: 185 DILRCSKLVLSKSAIEAL 202 D+LR ++ ++ A Sbjct: 185 DVLRSDDVLFTRGAYNVF 202 >gi|260909751|ref|ZP_05916445.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295] gi|260636176|gb|EEX54172.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295] Length = 209 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G + +++ IF ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V L L ++ +++N L+ARN+ ++ Sbjct: 121 NAIIVVEDFEMAAPKTKEYVNIVNNLQLEGRKSLLLLPNVNKNVYLSARNLQRSEVMTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++ ++EA+ Sbjct: 181 ALNAYKVLNADVLVITEKSLEAI 203 >gi|254492322|ref|ZP_05105495.1| ribosomal protein L4/L1 family [Methylophaga thiooxidans DMS010] gi|224462494|gb|EEF78770.1| ribosomal protein L4/L1 family [Methylophaga thiooxydans DMS010] Length = 205 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L +++ DG+ G ISVS+ +F + + ++ +V+ R G K RSEV+ G Sbjct: 1 MDLQLQSFDGKKAGNISVSDALFDREFNESLVHQVVTSYLAGARSGTHAQKTRSEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +R GG F + +K+ A+ LS+ ++ Sbjct: 61 RKPFAQKGSGRARAGTIRSPLWRSGGTTFAAKNRDYSKKVNRKMYRSAIASILSELRRND 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D + KTK L+ + ++L LSNALI+ N LA+RN+ +I I Sbjct: 121 ALIVVDKVELDTPKTKDLLAKAQSLGLSNALIVT-ENAAGNLALASRNLYDIAATDAAHI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N +LR K+V+S+ ++ LE+ Sbjct: 180 NPVALLRFEKVVMSEDSVRKLEESL 204 >gi|226953872|ref|ZP_03824336.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244] gi|294651633|ref|ZP_06728937.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194] gi|226835355|gb|EEH67738.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244] gi|292822482|gb|EFF81381.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194] Length = 200 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALII +D N LAARN+P+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLTDLNATRALIITDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|163752916|ref|ZP_02160040.1| 50S ribosomal protein L4 [Kordia algicida OT-1] gi|161326648|gb|EDP97973.1| 50S ribosomal protein L4 [Kordia algicida OT-1] Length = 209 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V +++G++ G ++S+ +FA++P + ++ +R G K+K R+E+A + Sbjct: 1 MEVAVLDINGKETGRKANLSDAVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA + AL+ K S Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRSYAQKLNKNVKRLARKSALTLKAKS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+VI++ KTK + +AL L S + + N L++RN+ +L Sbjct: 121 ESIIVIEDFDFDAPKTKNFINVLKALGLDSKKSLFVLGDSNNNVYLSSRNLKTSEVLTSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y I+ + +V+ + A+E +E Sbjct: 181 ELSTYKIVNANSIVVFEGALEGIESNL 207 >gi|221632977|ref|YP_002522200.1| 50S ribosomal protein L4/L1 family [Thermomicrobium roseum DSM 5159] gi|221156742|gb|ACM05869.1| ribosomal protein L4/L1 family [Thermomicrobium roseum DSM 5159] Length = 212 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G I +++ +F + P ++ + L Q R G +K R EV G Sbjct: 1 MQVPVYDLEGRAVDQIELADSVFGITPNIPVMHQALVRQLANARAGTHDTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S ++GGG +GP P +PKK+R LA+R LS K N Sbjct: 61 RKPWRQKGTGRARQGSIRAPHWKGGGVVWGPHPRSYRQEMPKKMRRLAIRSLLSVKQREN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+ L E KTK + + L L + LI+ + D N + AA N+ ++ +L Sbjct: 121 QIVVVRGLTDIEPKTKVMKGVLQRLPLATARSTLIVVDQRRD-NVRRAAGNLEDVKVLVA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N+ D L+ +++L+ A+E + Sbjct: 180 HNMNIRDGLKYERMILTPEAVEVI 203 >gi|188995731|ref|YP_001929983.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277] gi|226730705|sp|B2RLZ1|RL4_PORG3 RecName: Full=50S ribosomal protein L4 gi|188595411|dbj|BAG34386.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277] Length = 209 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ GED G + + + IFA++P + ++ +R G K+K RSE++ + Sbjct: 1 MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK+++LA R ALS K + Sbjct: 61 TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYTFKLNKKLKALARRSALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ KTK AL + ++ ++++N L+ARN+PN NL+ Sbjct: 121 NEIIVVEDFNFDAPKTKAFKAISAALKVDEKKVLYVLPEVNKNVYLSARNLPNTNLILAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 IN Y +L LVL++ ++ + + FK Sbjct: 181 LINTYTVLASKNLVLTERSVAVVNELFK 208 >gi|262370577|ref|ZP_06063902.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046] gi|262314377|gb|EEY95419.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046] Length = 200 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK L+ + L+ + ALI+ +D N LAARNIP+++++ I+ ++ Sbjct: 122 EFAVAAPKTKELLAKLNDLNATRALIVT-ESVDENLYLAARNIPHVDVVDAAAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|238898926|ref|YP_002924608.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491562|sp|C4K7B7|RL4_HAMD5 RecName: Full=50S ribosomal protein L4 gi|229466686|gb|ACQ68460.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 201 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ + ++VSE F + ++ +V+ + R G K R+EV + Sbjct: 1 MELVMKDAECA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKSRAEVKASR 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ N Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGITFAAKPQDHSQKVNKKMYQGALKSILSELVRQN 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ ++ KTK L+ + + + L + LI+ ++D N LAARN+ +++ GI Sbjct: 117 RLIVVETFSVEKPKTKLLIQKLKEMSLRDVLIVT-EEVDENLFLAARNLYKVDVRDAAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ +A++ LE+ Sbjct: 176 DPVSLISFDKVVMTGNAVKQLEEML 200 >gi|320108395|ref|YP_004183985.1| 50S ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4] gi|319926916|gb|ADV83991.1| ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4] Length = 226 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 2/209 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N +GE G + +++++F ++ + +L ++ R G + +K + V+ Sbjct: 1 MAKINVVNFNGERVGEVELADEVFGVEVNEALLWEAVKHYRASLRQGTAATKNKKLVSGA 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P + PKK ALR AL+ K Sbjct: 61 GKKLWKQKGTGRARVGSIRSPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSALASKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPV 178 + V+++L + E KTK LD ++ G +L N +RN+ + L+ Sbjct: 121 GKLTVVESLAAAEPKTKLYRQALDKLDAKKTALLVESGHKLTENAFFGSRNLDGVELVLS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+LR + SK A EA+++ K Sbjct: 181 SEVHPYDLLRYEHAIFSKDAFEAIQEMLK 209 >gi|302345075|ref|YP_003813428.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845] gi|302149373|gb|ADK95635.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845] Length = 209 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207 >gi|237749516|ref|ZP_04579996.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13] gi|229380878|gb|EEO30969.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13] Length = 206 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N + + G + + IF + ++ +++ R S+ K R VA+T Sbjct: 1 MELKLLNGNDQAAGKVDAPDTIFGRDYNEALIHQLVVAFQANARTADSQQKNRETVAHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P H + KK+ + LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNSPDQNFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + VID L KTK L + + + L+I D N LA+RN+PN+ ++ Sbjct: 121 DRLTVIDQLAIDAPKTKMLAQKLKEFGFGSVLVITDS-FDENLYLASRNLPNVLVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++K+A+ +E+ Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEEML 205 >gi|160872138|ref|ZP_02062270.1| ribosomal protein L4/L1 family [Rickettsiella grylli] gi|159120937|gb|EDP46275.1| ribosomal protein L4/L1 family [Rickettsiella grylli] Length = 205 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ G ++ + +SE +F + + ++ +V+ R G K RS V G Sbjct: 1 MQVALLTKSGVNQ-ELQLSETVFGCRFNEPLVHQVVTAYLAGGRQGSRAQKNRSAVRGGG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG GRAR + +RGGG F + KK+ A+R S+ N Sbjct: 60 RKPWKQKGMGRARAGTIRSPLWRGGGVTFAASKQDFTQKINKKMYRFAIRSICSELLRQN 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +V+++ ++ KT+ LV ++L++S ++I +++ LAARN+P++ L V+ I Sbjct: 120 RFVVLESFEIEKPKTRDLVALLQSLNISQKILIVLEEVNEVTYLAARNLPHVELTDVEAI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N ++ C K++++ +A++ +E+ Sbjct: 180 NPVGLIDCQKVLITATALKQIEELL 204 >gi|281423838|ref|ZP_06254751.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302] gi|299141148|ref|ZP_07034285.1| ribosomal protein L4/L1 family protein [Prevotella oris C735] gi|281402065|gb|EFB32896.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302] gi|298577108|gb|EFI48977.1| ribosomal protein L4/L1 family protein [Prevotella oris C735] Length = 209 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 114/203 (56%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF ++P +L ++ +R G +K+K RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVNLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V++++ + KTK V + + + ++ ++++N L+ARNI ++ Sbjct: 121 NAVVVVEDINFEAPKTKEFVNFTKNIKVEGKKTLVLLPEVNKNVYLSARNIQGAEVMTAT 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L +V+++SA++A+ Sbjct: 181 SLNSYKVLNADVVVIAESALKAI 203 >gi|110180284|gb|ABG54385.1| 23S ribosomal protein L4 [Brucella ceti] Length = 188 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 18/206 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++ Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQ--------- 51 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 GRARH S QFRGGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 52 ---------GRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 102 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 103 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 162 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 163 NVYDILRRGKLVLSKAAVEALEERFK 188 >gi|51473838|ref|YP_067595.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington] gi|81610771|sp|Q68W79|RL4_RICTY RecName: Full=50S ribosomal protein L4 gi|51460150|gb|AAU04113.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington] Length = 207 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G I++++DIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG + GP LPKKVR L L HALS+K + Sbjct: 61 TKKPFKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++I++L ++ KT LV + IIDG ++D NF LA +NI N ++P G Sbjct: 121 GKLLIINSLKLEKPKTSVLVNLLNKFQGQSFFIIDGNKVDTNFSLATKNIYNTLIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSFLEERLR 207 >gi|296137305|ref|YP_003644547.1| ribosomal protein L4/L1e [Thiomonas intermedia K12] gi|295797427|gb|ADG32217.1| ribosomal protein L4/L1e [Thiomonas intermedia K12] Length = 206 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L N G+ VS ++F + ++ +++ R+G K R+ V ++ Sbjct: 1 MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + KK +R S Sbjct: 61 RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK + + +A+ + +II D N LAARN+PN+ ++ + Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADG-ADENLFLAARNLPNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + +L K+V++K A+ L++ Sbjct: 180 ADPLSLLFYKKVVMTKGAVSQLQEML 205 >gi|298373699|ref|ZP_06983688.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274751|gb|EFI16303.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 212 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 110/208 (52%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E V N+ G++ G + +++ +F ++P + ++ KR G KSK RSE+A + Sbjct: 1 MEAKVFNIQGKETGRTVQLNDSVFGIEPNNHAIYLDVKQYMANKRQGTHKSKERSEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK++ LA + A + K Sbjct: 61 TKKLGRQKGGGGARRGDINSPLLHGGARVFGPKPRDYSFKLNKKLKQLARKSAFATKAAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V L + +++ + ++N L++RN+P +N++ Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAITNNLKINDKKILLILGENNKNIFLSSRNLPKVNVITTD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y IL C+ L++S+ A+ ++ FK Sbjct: 181 ELSTYKILDCAVLLISEKAVAGIDQHFK 208 >gi|195343148|ref|XP_002038160.1| GM17909 [Drosophila sechellia] gi|194133010|gb|EDW54578.1| GM17909 [Drosophila sechellia] Length = 296 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++L + +++I N A+ ++ +NL+P G+NVY +L+ Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|34499640|ref|NP_903855.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472] gi|46577180|sp|Q7NQF3|RL4_CHRVO RecName: Full=50S ribosomal protein L4 gi|34105490|gb|AAQ61845.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472] Length = 206 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V N G+ G + VS+ +F + + ++ +V+ R G R+EV ++ Sbjct: 1 MELNVINTQGKAVGSLQVSDALFGREYNEALVHQVVTAFLANARSGNRAQLTRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S RGGG+AF P + +K+ + LS Sbjct: 61 KKPFRQKGTGNARAGMTSTPNRRGGGRAFPNKPDENFTQKVNRKMYRAGIATILSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D+L KTK V + + L AL I +L N L++RN+PN+ ++ Sbjct: 121 ERLIVVDDLSVASPKTKEFVGAVQPMGLEQALFIT-NELSENLYLSSRNLPNMLVIEAVQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + Y +LR K V+++ A++ LE+++ Sbjct: 180 ADPYSLLRFKKTVITRDAVKQLEEQW 205 >gi|78221847|ref|YP_383594.1| 50S ribosomal protein L4 [Geobacter metallireducens GS-15] gi|109893597|sp|Q39Y05|RL4_GEOMG RecName: Full=50S ribosomal protein L4 gi|78193102|gb|ABB30869.1| LSU ribosomal protein L4P [Geobacter metallireducens GS-15] Length = 220 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 110/207 (53%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +++ G + +S+ +F ++ ++ ++ Q +R G K R+ V+ Sbjct: 14 MATIDVFDINKNKVGEMDLSDAVFNGDVREYLIHEAVKVQLANRRAGTVGVKNRAAVSGG 73 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + GGG AFGP ++ KK R A+R ALS F Sbjct: 74 GKKPFKQKGTGQARQGCIRAPHYVGGGVAFGPQAKTYALSMNKKARKAAVRSALSMLFKE 133 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V+D L TK V + D++ L+I + + N +L+ARN+ ++ +L + Sbjct: 134 NKLSVLDCLSLPSISTKGFVGVLKTFDVTKTLVIID-EANTNLELSARNVKDVKVLKAEH 192 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +NV+DI++ + ++L++SA+ +E + Sbjct: 193 LNVFDIVKFNNIILTQSAVRKIEGALQ 219 >gi|158297277|ref|XP_317543.4| AGAP007937-PA [Anopheles gambiae str. PEST] gi|157015117|gb|EAA12669.4| AGAP007937-PA [Anopheles gambiae str. PEST] Length = 224 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G++ + +F P+ I+ + + WQ + + + +K R+EV G K + QKG GRAR Sbjct: 10 GIVELDNAVFGASPRIDIVHQNIEWQRKYRFVSFAHTKTRNEVRGGGRKPWPQKGLGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133 H S +RGGG A GP P + LP R L L LS K +D+ V+ NL Sbjct: 70 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQDDLHVVKNLEIPT 129 Query: 134 CKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +YL A + L +D + RN ++A NI +INL+P G+NVY +L+ + Sbjct: 130 DDPQYLQDLVAARQWGPSVLFVDATDVLSRNISISAENIDHINLMPTYGLNVYSMLKHNT 189 Query: 192 LVLSKSAIEALEDRF 206 +VL++ A+ ++E + Sbjct: 190 VVLTEDAVRSVESKL 204 >gi|89891147|ref|ZP_01202655.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7] gi|89516791|gb|EAS19450.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7] Length = 209 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++SV ++ G++ G + +S+ IFA++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVSVIDIKGKETGRQVELSDSIFAIEPNDHAIYLDVKQYLANQRQGTHKAKQRAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGPVP L K + LA + LS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPVPRDYSFKLNKGQKRLARKSVLSQKMAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 ++ ++++ KTK + ++L L N L + G + N L++RN ++ Sbjct: 121 GNLHIVEDFNFDAPKTKNFIEVLKSLGLDNKKSLFVLGGS-NNNVYLSSRNFKGSEVVTN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL + +V+ + ++E +E+ Sbjct: 180 SELSTYKILHANSVVVLEGSLEGIEETL 207 >gi|87248365|gb|ABD36235.1| ribosomal protein L4 [Bombyx mori] Length = 284 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ + NLD + G+I + ++A P ++ + WQS + + +K +EV Sbjct: 55 EVWIENLDSVEEKKLGLIELHPMVYAAPPSIDMIHSNVMWQSKYSWVSWAHTKTSAEVRG 114 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRA H S S FRGGG A GP LP + L LS K Sbjct: 115 GGKKPWPQKGLGRASHGSMSSPLFRGGGVAHGPRSGKSHFFMLPFHLSLHGLTTTLSAKL 174 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLL 176 +D+ ++ +L +++YLV + + LIID N A N+ ++N++ Sbjct: 175 AQDDLHIVKDLELPTDESQYLVDLIENSNWGPSVLIIDDTDYAPSNITAATDNLLHVNIM 234 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ LVL+++A E +E++ Sbjct: 235 PVYGLNVYSMLKHDTLVLTQAAAEKIEEKL 264 >gi|33594480|ref|NP_882124.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I] gi|46577211|sp|Q7VTD2|RL4_BORPE RecName: Full=50S ribosomal protein L4 gi|33564556|emb|CAE43872.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I] Length = 205 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+D + KTK + ++L L + LII +D N LA RN+P + ++ + Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPYVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204 >gi|260787918|ref|XP_002588998.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae] gi|229274171|gb|EEN45009.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae] Length = 264 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ ++ E G++ + D+FA P+ IL R +RWQ ++I ++ R+E+ G K Sbjct: 32 TLGDIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKP 91 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGK GP P LP K R+L L+ AL+ K D+ Sbjct: 92 WPQKGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDL 151 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181 ++D L +YL R + ++++ ++ N A+ + IN++P+ G+ Sbjct: 152 HIVDTLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEEISENVCEASAQLNTINVMPLVGL 211 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY +L+ LVL+ ++ LE++ Sbjct: 212 NVYSMLKHDTLVLTLPCVQKLENKL 236 >gi|195579557|ref|XP_002079628.1| GD21919 [Drosophila simulans] gi|194191637|gb|EDX05213.1| GD21919 [Drosophila simulans] Length = 296 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++L + +++I N A+ ++ +NL+P G+NVY +L+ Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|121591696|ref|ZP_01678925.1| ribosomal protein L4 [Vibrio cholerae 2740-80] gi|121546447|gb|EAX56677.1| ribosomal protein L4 [Vibrio cholerae 2740-80] Length = 176 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 1/176 (0%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 ++ +V+ + R G K RSEV+ G+K + QKGTGRAR + +R GG F Sbjct: 1 ALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTF 60 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150 P + KK+ A++ LS+ ++V++N + KTK LV + + L+L++ Sbjct: 61 AAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELND 120 Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LI+ G ++D N LAARN+ +++ V GI+ ++ K++++ +A++ +E+ Sbjct: 121 VLIVTG-EVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 175 >gi|325000491|ref|ZP_08121603.1| 50S ribosomal protein L4 [Pseudonocardia sp. P1] Length = 228 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ +G G + + + +F + ++ +V+ Q R G +K R EV Sbjct: 1 MSTVQIKTPEGAAGGSVELPDHVFDVTANIALMHQVVTAQLNAARQGSHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSVRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINL 175 + V+ LV TK L S L++ L+ RN+P +++ Sbjct: 121 GRVHVVSALVEGDTPSTKAARKTLEVLLPEAGASRVLVVVERTA-ETALLSLRNLPQVHM 179 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N +D+L +V +++A++ Sbjct: 180 IAPDQLNTHDVLVNDVVVFTQTALDDF 206 >gi|17933744|ref|NP_524939.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster] gi|7298296|gb|AAF53526.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster] gi|16769472|gb|AAL28955.1| LD33485p [Drosophila melanogaster] gi|220944276|gb|ACL84681.1| mRpL4-PA [synthetic construct] gi|220954122|gb|ACL89604.1| mRpL4-PA [synthetic construct] Length = 296 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ I+ + WQS + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S +GGG GP P + LP R L L LS K +D+ +IDN+ Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++L + +++I N A+ ++ +NL+P G+NVY +L+ Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|120437173|ref|YP_862859.1| 50S ribosomal protein L4 [Gramella forsetii KT0803] gi|166234671|sp|A0M597|RL4_GRAFK RecName: Full=50S ribosomal protein L4 gi|117579323|emb|CAL67792.1| 50S ribosomal protein L4 [Gramella forsetii KT0803] Length = 208 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V ++ G++ G +S+ +FA++P + ++ +R G K+K R+E+ + Sbjct: 1 MEIAVLDIKGKETGRKAKLSDSVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIKGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPRNYGFKLNKNLKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 IMVI++ KTK +AL + S +I ++N L++RN+ ++ Sbjct: 121 KAIMVIEDFSFDTPKTKNFTEVLKALGIESKKSLIVLGDSNKNVYLSSRNLKTSEVISSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL +V + ++E +E + Sbjct: 181 ELSTYKILNAKSIVFLEGSLEGIESKL 207 >gi|293602634|ref|ZP_06685077.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553] gi|292819006|gb|EFF78044.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553] Length = 206 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K R+EV ++ Sbjct: 1 MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRAEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 121 DRIAVVESFDLESPKTKAAAAKLKSLGLDSVLIITDS-VDENVYLATRNLPHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEEML 205 >gi|289548390|ref|YP_003473378.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484] gi|289182007|gb|ADC89251.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484] Length = 197 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 2/194 (1%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 + + EDIF ++ ++ +L ++WQ +R G +K R+EV Y+G K+ QKGTG AR Sbjct: 2 SDLQLREDIFGVEVKKHVLWEAVKWQLAARRQGTHSTKTRAEVNYSGRKILPQKGTGNAR 61 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE- 133 H + F GGG A GP P + LPKKVR LALR ALS K ++++D + E Sbjct: 62 HGERGAPIFVGGGVAHGPKPRDYYYTLPKKVRKLALRMALSSKAKEGKVLLVDKVEIGEV 121 Query: 134 CKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK V + ++++ +++ Q D + RNIP +LPV G+NVYDIL L Sbjct: 122 PKTKKAVEFLKTHNVADQKVLLIVPQKDEVVIKSFRNIPTAKVLPVDGLNVYDILWADWL 181 Query: 193 VLSKSAIEALEDRF 206 ++ K A+ + +R Sbjct: 182 IIDKMALGKIYERL 195 >gi|124268626|ref|YP_001022630.1| 50S ribosomal protein L4 [Methylibium petroleiphilum PM1] gi|166234685|sp|A2SLF6|RL4_METPP RecName: Full=50S ribosomal protein L4 gi|124261401|gb|ABM96395.1| LSU ribosomal protein L4P [Methylibium petroleiphilum PM1] Length = 206 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + + +F + ++ +V+ R G K R V ++ Sbjct: 1 MELELLNEQGQAASKVDAPDTVFGRDYNEALVHQVVVAYQANARQGTRAQKDRQTVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + S Sbjct: 61 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSHKVNKKMYRAGMAAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D++ + KTK L +F+A+ L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSIKVETPKTKALAAKFKAMGLESVLVI-ADEVDENLFLASRNLANVLVIEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AIE L++ Sbjct: 180 ADPLSLVFYKKVLVTKGAIEKLKEML 205 >gi|282899953|ref|ZP_06307914.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505] gi|281195223|gb|EFA70159.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 9/213 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E +V+N GE+ G S + + I+ R L Q R G + +K R+EV Sbjct: 1 MVESTVKNWQGEEVGQTSFELRVAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVS--RR 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGC--QLDRNFQLAARNIPNI 173 D++V++ + K+K LV + L+I Q L+ARN+ NI Sbjct: 119 EDLIVVEEFTDQLQRPKSKELVAALARWGATADQKTLLILSEIGQNTETISLSARNVENI 178 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NV+D+L K+V++ SA+ +++ + Sbjct: 179 KVIAADQLNVFDLLHADKIVVTSSALTKIQEVY 211 >gi|206891119|ref|YP_002249244.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii DSM 11347] gi|226731439|sp|B5YG46|RL4_THEYD RecName: Full=50S ribosomal protein L4 gi|206743057|gb|ACI22114.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 210 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MIE+ +R+++ G V + +F + ++ + +R G +K RSEV+ Sbjct: 1 MIEIEIRDINNNIVGKKEVPDIVFNNSASESVVHTAVVAYMANQRQGTHCTKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG FGP P LPK+++ AL AL+ K+ Sbjct: 61 GKKPWRQKHTGRARHGSIRSPLWRKGGIVFGPKPRDYYIQLPKQMKDTALFKALTMKYRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+++DNL KTK +V + L L ++++I + D L+ARNIP I ++ + Sbjct: 121 NEILLLDNLSLNRIKTKDMVEILKNLQLEESSVLIALPEKDEKVLLSARNIPYIGVVRAE 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + K+V + + ++ L Sbjct: 181 DLNAYHVAMFDKVVFTVAGLDKL 203 >gi|83748150|ref|ZP_00945177.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551] gi|207721897|ref|YP_002252335.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2] gi|207723096|ref|YP_002253501.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609] gi|300702781|ref|YP_003744382.1| 50S ribosomal protein L4 [Ralstonia solanacearum CFBP2957] gi|83725118|gb|EAP72269.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551] gi|206587065|emb|CAQ17649.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2] gi|206588289|emb|CAQ18987.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609] gi|299070443|emb|CBJ41738.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum CFBP2957] Length = 206 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + KTK L +FRA+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMGLDSVLVITD-NMDENLYLASRNLAHVFVVEARH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++ ++ K++++K+A+ +E+ K Sbjct: 180 VDPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|112791755|gb|ABI22153.1| ribosomal protein L4 [Flavobacterium hibernum] Length = 209 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V + +G+D G + +S+ +FA++P + ++ +R G K+K R+EV + Sbjct: 1 MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGTIFGPRQRSYSFKLNKSLKRLARKSAFSIKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++I+V+++ + TK + +AL L N + + ++N L++RN+ N++ Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLGESNKNVYLSSRNLKASNVVTSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL + LVL + ++E +E+ Sbjct: 181 ELSTYAILNTNNLVLLEGSLELIEENL 207 >gi|312795775|ref|YP_004028697.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI 454] gi|312167550|emb|CBW74553.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI 454] Length = 208 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G++ ++ S+ +F + ++ +++ R G K R +V +T Sbjct: 3 MELKLLNDQGQESAGVNASDIVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ + LS Sbjct: 63 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFGQKVNKKMFRAGVCSILSQLARE 122 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++ KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + Sbjct: 123 GRLSVVEDIKLDAPKTKLLAAKFKAMGLESVLVITDT-VDENLYLASRNLPHVAVVEPRY 181 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 182 ADPLSLIYFKKVLVTKAAVAQIEELL 207 >gi|255994808|ref|ZP_05427943.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC 49989] gi|255993521|gb|EEU03610.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC 49989] Length = 207 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+++ ++G+D G + +S+ +F + P + + V++ R G +K R +V Sbjct: 1 MSEVNMMTIEGKDAGKLKLSDAVFGITPNENAVREVIKNFLANNRQGTQSAKTRGDVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG AF P P + LPKKV+ LA+ ALS K + Sbjct: 61 GRKPFRQKGTGRARQGSTTDPTKVGGGVAFAPKPRSYSYTLPKKVKKLAMISALSSKAQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L + +TK +V + + + +I D +A NIPN+ V Sbjct: 121 KELIVLDKLEIADYRTKDVVEMLKNVKAAKKALIVTADKDEKVVKSAANIPNVETTNVSR 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY+I+ + + +K+AIE +E+ + Sbjct: 181 MNVYEIVNHTNFIATKAAIEKIEEVY 206 >gi|255319814|ref|ZP_05361019.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82] gi|262380347|ref|ZP_06073501.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164] gi|255303133|gb|EET82345.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82] gi|262297793|gb|EEY85708.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164] Length = 200 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 NL+ + +SE F + + ++ +V+ R G K R++V+ G K + Q Sbjct: 2 NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S + GGGK F P + +K+ A++ L++ + +++++ Sbjct: 62 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L KTK L+ + L+ ALI+ +D N LAARN+P+++++ I+ ++ Sbjct: 122 ELQVSAPKTKELLAKLNDLNAPRALIVTDA-VDENLYLAARNLPHVDVVDATAIDPVSLI 180 Query: 188 RCSKLVLSKSAIEALE 203 K+V+S +A + +E Sbjct: 181 AFDKVVMSVAAAKKIE 196 >gi|303237464|ref|ZP_07324029.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN] gi|302482284|gb|EFL45314.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN] Length = 209 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLDVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPTPRDYSFKLNKKVKQLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + KTK V + + + S +++ + ++ L+ARN+ + Sbjct: 121 AAIIVVEDFNFEAPKTKDFVNFAKNIKVESKKVLLVLPEAQKSVYLSARNLKKAQVTTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++++++ +++ Sbjct: 181 QVNTYSVLNADVLVVTENSLKTIDEIL 207 >gi|282898356|ref|ZP_06306347.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9] gi|281196887|gb|EFA71792.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9] Length = 213 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 9/213 (4%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E V+N GE+ G S I + I+ R L Q R G + +K R+EV Sbjct: 1 MVESIVKNWQGEEVGQTSFELRIAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGGG FGP P L +K R LALR A Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVS--RR 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGC--QLDRNFQLAARNIPNI 173 D++V++ + K+K LV + L+I Q L+ARN+ NI Sbjct: 119 EDLIVVEEFTDQLQRPKSKELVAALARWGATAEQKTLLILSEIGQSTETISLSARNVENI 178 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NV+D+L K+V++ SA+ +++ + Sbjct: 179 KVIAADQLNVFDLLHADKIVVTSSALNKIQEVY 211 >gi|45644694|gb|AAS73082.1| predicted ribosomal protein L4 [uncultured marine gamma proteobacterium EBAC20E09] Length = 204 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + L IS+S ++F+ + + ++ + + R G +K K RSEV G Sbjct: 1 MKIEL--LSNSKNKDISISNEVFSKEFNESLVHQAVVSFMAAARQGSAKQKNRSEVRGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR + +RGGG F P + KK+ A++ S+ N Sbjct: 59 KKPYRQKGTGRARAGTIRSPLWRGGGVTFAARPRDFSKKINKKMYRAAIKSIFSELVRQN 118 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ I+ V ++ KTK + + LS LII +LD N L+ARNIPN++++ V+ I Sbjct: 119 RLVAIEKPVLEKPKTKEIANFLKEFSLSKVLIIID-ELDMNLYLSARNIPNVDVITVKEI 177 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 N ++++ K+ ++ A++ +E+ Sbjct: 178 NPVNLIKSHKVAVTSEALKQIEE 200 >gi|194759834|ref|XP_001962152.1| GF15323 [Drosophila ananassae] gi|190615849|gb|EDV31373.1| GF15323 [Drosophila ananassae] Length = 296 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ I+ + WQ + + +++K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSFAQTKTRAEVRGGGRKPWPQKGMGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S F+GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 139 ARHGSIRSPLFKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++L + +++I N A + +NL+P G+NVY +L+ Sbjct: 199 PTKDGQFLKDLIAERNWGPSVLIVDEDHMFPANICQATDELGYVNLMPSFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|310779595|ref|YP_003967928.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926] gi|309748918|gb|ADO83580.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926] Length = 210 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L++ NL G+ G + V + +F ++P + +L VL + R G + +K R+ V Sbjct: 1 MAVLNIYNLAGDQTGTLEVKDTVFGIEPNKAVLHEVLTAELAAARQGTAATKTRAMVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG FGP P + KKVR +AL+ ALS K Sbjct: 61 GRKPFKQKGTGRARQGSTRAPHMVGGGVTFGPQPRSFEKKVNKKVRKVALKSALSAKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGC---QLDRNFQLAARNIPNINLL 176 I+V+D + KTK ++ +AL+ + L + D N L+ARN+ N +L Sbjct: 121 GSIVVLDG-AIEAPKTKTIMALTKALEANTKQLFVVNDLANDADFNLYLSARNLENAVVL 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + VY +L+ +K++++K A+ +E+ Sbjct: 180 QPNELGVYWLLKQNKVIITKEALATIEEVL 209 >gi|28493520|ref|NP_787681.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist] gi|46577234|sp|Q83FY7|RL4_TROWT RecName: Full=50S ribosomal protein L4 gi|28476562|gb|AAO44650.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist] Length = 248 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 1/198 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +V ++ G G + + +F P ++ +V+ Q R G K+K R+EV+ +G K Sbjct: 6 TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S Q RGGG GPVP VH PKK+ AL L+++ + + Sbjct: 66 FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRNYVHRTPKKMIKAALAGCLTNRARAGRVH 125 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++D+ +T F+ LS+ L++ D + RNIP + L+ V +N Y Sbjct: 126 IVDSFG-DTPSVADALTLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184 Query: 185 DILRCSKLVLSKSAIEAL 202 D+LR ++ ++ A Sbjct: 185 DVLRSDDVLFTRGAYNVF 202 >gi|325856055|ref|ZP_08171944.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A] gi|327313191|ref|YP_004328628.1| 50S ribosomal protein L4 [Prevotella denticola F0289] gi|325483727|gb|EGC86691.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A] gi|326946137|gb|AEA22022.1| 50S ribosomal protein L4 [Prevotella denticola F0289] Length = 209 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 112/203 (55%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALTYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + L++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDGKKLLLVLPEVEKNVYLSARNLQKTEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++++++ + Sbjct: 181 QVNSYKVLNADVLVVTENSLKVI 203 >gi|219681869|ref|YP_002468255.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471574|ref|ZP_05635573.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254803721|sp|B8D9U6|RL4_BUCA5 RecName: Full=50S ribosomal protein L4 gi|219624712|gb|ACL30867.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 201 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+++ V+SVSE IFA + ++ +V+ S R G K R+EV+ +G Sbjct: 1 MELVVKDVQN----VLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 57 RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V +N KTK LV + + ++L N LI+ ++D N LA+RN+ ++++ V I Sbjct: 117 RLIVFENFSLNAPKTKLLVQKLKDINLKNVLIVT-NKIDNNLFLASRNLYSVDVKDVHSI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEEIL 200 >gi|167519925|ref|XP_001744302.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777388|gb|EDQ91005.1| predicted protein [Monosiga brevicollis MX1] Length = 229 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 107/195 (54%), Gaps = 1/195 (0%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 GV+ + +F + + I+ RV+ WQ R G +K+K R EV G K + QKGTGR Sbjct: 12 QVGVMELDPTVFGEEIRVDIMHRVVVWQRALWRKGNAKTKTRGEVRGGGRKPHPQKGTGR 71 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR S V +RGGG GP+P LP+KVR +R A+S ++ ND++++D+LV Sbjct: 72 ARTGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVAISTRYQQNDLVIVDDLVLP 131 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDR-NFQLAARNIPNINLLPVQGINVYDILRCSK 191 KTK L L +AL + G D N + A RN+P + G +VY+IL+ K Sbjct: 132 TLKTKSLAEIAAQHRLESALFVYGHDEDSMNLKWACRNMPAFHATSAAGAHVYNILKHDK 191 Query: 192 LVLSKSAIEALEDRF 206 LVLS SA+ LE R Sbjct: 192 LVLSVSAVRDLERRL 206 >gi|311744808|ref|ZP_07718604.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272] gi|311311925|gb|EFQ81846.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272] Length = 323 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + DIF + ++ +V+ Q R G +K R EV G K Y QKGTGRAR Sbjct: 10 VDLPVDIFGTQVNIPLIHQVVVAQLAAARQGTHDTKSRGEVRGGGKKPYRQKGTGRARQG 69 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135 S Q+ GGG GP P PKK+++ ALR ALSD+ S + V+D VS Sbjct: 70 SIRAPQYNGGGVVHGPTPRNYDQRTPKKMKAAALRGALSDRARSGRLHVVDAFVSAAAPS 129 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK V R++ L +++ + D + RN+ ++ +LP +N YD+L+ L+ + Sbjct: 130 TKDAVATLRSITLRPRVLVAVTREDVVTAKSLRNVADVVILPFDQLNTYDVLKSDDLIFT 189 Query: 196 KSAIEAL 202 + A + Sbjct: 190 REAFDGF 196 >gi|294790412|ref|ZP_06755570.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304] gi|294458309|gb|EFG26662.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304] Length = 219 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 7/209 (3%) Query: 1 MIE--LSVRNLDGEDKGVISVSEDIFAL---KPQQGI--LARVLRWQSWRKRIGCSKSKG 53 M + L V LDG + G ++ E+IF + + + I + +V+ Q R G K Sbjct: 1 MADVSLKVTGLDGVEAGSVTAPEEIFGIAQDEVRTHIPLVHQVVVAQLAAARQGTHAVKN 60 Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 R+ ++ G K + QKGTGRAR S QF GG GPVP PKK++ ALR+ Sbjct: 61 RARISGGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPKKMKQAALRYV 120 Query: 114 LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 LSD+ + + V+D + + TK + + + + + N L+ RN+P + Sbjct: 121 LSDRANAGRVHVVDFGLGDKPSTKSALAALNPVVAQRFTTVVLDRENINEWLSVRNLPTV 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++L +N YD++ LV +K +EA Sbjct: 181 HVLFADQLNTYDVVTAEDLVFTKEGLEAF 209 >gi|115376101|ref|ZP_01463346.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1] gi|310820995|ref|YP_003953353.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1] gi|115366916|gb|EAU65906.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1] gi|309394067|gb|ADO71526.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1] Length = 207 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LDG+ I +S+++F +P + V + Q KR G K S V+ Sbjct: 1 MAKFKVIDLDGKQVSEIELSDEVFGAEPNPHLFYEVAKMQQINKRRGTVGVKNTSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S S + GGGKA P + P+KVR ALR ALS + Sbjct: 61 GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALRAALSQRARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + ++D KTK R L L NAL++D + + + + RN+ ++LP + Sbjct: 121 NALFILDGFKLDAPKTKQAFDVLTRRLKLENALVVDD-KGNNHLHRSVRNLARFDVLPPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 GIN+ +LR +LVL+ +A +A+++ Sbjct: 180 GINLESVLRHKQLVLTSAAAKAIQEAL 206 >gi|120609042|ref|YP_968720.1| 50S ribosomal protein L4 [Acidovorax citrulli AAC00-1] gi|166234623|sp|A1TJ08|RL4_ACIAC RecName: Full=50S ribosomal protein L4 gi|120587506|gb|ABM30946.1| LSU ribosomal protein L4P [Acidovorax citrulli AAC00-1] Length = 206 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ I V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVI-SDEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|254495342|ref|ZP_05108266.1| 50S ribosomal protein L4 [Polaribacter sp. MED152] gi|85819696|gb|EAQ40853.1| 50S ribosomal protein L4 [Polaribacter sp. MED152] Length = 209 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 113/208 (54%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S+D+F ++P + ++ +R G KSK R+E+ + Sbjct: 1 MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSIQAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++V+++ KTK V ++L+L +L + + + N L++RN+ N ++ Sbjct: 121 KNLVVVEDFNFDTPKTKNFVDVLKSLELDAKKSLFVLDGE-NANVYLSSRNLKNSKVIKA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 IN Y +L +K+V+++ ++E + Sbjct: 180 SEINTYGVLNANKIVITEGSLEGINSNL 207 >gi|323144965|ref|ZP_08079525.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066] gi|322415244|gb|EFY06018.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066] Length = 203 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 7/208 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + G DKG + VSE F + + ++ +V+ R G K RSEV+ G Sbjct: 1 MELKMI---GADKG-LEVSESTFGREFNEALVHQVVVAYQSTARAGTKAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + +K+ +A+R LS + Sbjct: 57 KKPFRQKGTGRARAGSSRSPLWRAGGTIFAAKPQDWTQKVNRKMYRVAMRSILSQLVRED 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + + KTK LV + + LDL N LI++G + D + LA+RN+ + + Sbjct: 117 RLLVVGDFKLENHKTKTLVAKLKELDLKNVLIVNG-EFDSDLFLASRNLYKVEVCQPGTA 175 Query: 182 --NVYDILRCSKLVLSKSAIEALEDRFK 207 N +++ K+V++++A++ +E+ K Sbjct: 176 EFNPINLINFDKVVMTEAAVKKVEEMLK 203 >gi|73667227|ref|YP_303243.1| 50S ribosomal protein L4 [Ehrlichia canis str. Jake] gi|109893593|sp|Q3YRL0|RL4_EHRCJ RecName: Full=50S ribosomal protein L4 gi|72394368|gb|AAZ68645.1| LSU ribosomal protein L4P [Ehrlichia canis str. Jake] Length = 205 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+S+ N++ + G I ++ IF++ + IL V+ WQ ++R G K+K +++ T Sbjct: 1 MEVSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ R + + LIID ++N + RN+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIRNFEHKSFLIID-KDYNKNVVCSCRNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ A++ LE+R Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204 >gi|15604504|ref|NP_221022.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Madrid E] gi|6226007|sp|Q9ZCQ6|RL4_RICPR RecName: Full=50S ribosomal protein L4 gi|3861198|emb|CAA15098.1| 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii] gi|292572286|gb|ADE30201.1| 50S ribosomal protein L4 [Rickettsia prowazekii Rp22] Length = 207 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ + +L E+ G I++++DIFA++ + I+ +V+ WQ + G K+K SEV+ T Sbjct: 1 MKTKILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q RGGG + GP LPKKVR L L HALS+K+ Sbjct: 61 TKKPFKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++ID+L + KT LV + +IDG ++D NF LA +NI N ++P G Sbjct: 121 EKLLIIDSLKLDKPKTSILVNLLSKFQGQSFFVIDGNKVDINFSLATKNIYNTLIVPQIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDI+R ++LS+ A+ LE+R + Sbjct: 181 ANVYDIIRHEYVLLSQEAVSFLEERLR 207 >gi|91094379|ref|XP_970941.1| PREDICTED: similar to mitochondrial 39S ribosomal protein L4 [Tribolium castaneum] gi|270014913|gb|EFA11361.1| hypothetical protein TcasGA2_TC011518 [Tribolium castaneum] Length = 274 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ + N D + ++ + ++FA P+ I+ +RWQS + + + +K R EV Sbjct: 44 QVWLENFDTIEEKKLAILELHPEVFAANPRVDIIHDNVRWQSLYRYVSYAHTKSRFEVRG 103 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S FRGGG GP P + LP R L LS K Sbjct: 104 GGRKPWPQKGLGRARHGSIRSPLFRGGGVIHGPKSPNPHFYMLPFYTRIHGLTATLSIKL 163 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ VI +L ++ ++ + L +D + RN A ++ + NL+ Sbjct: 164 AQDDLHVITDLEIPTDDPNFVEELVKSRKWGPSVLFVDESDIMPRNITAATDSVKHFNLM 223 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+++A++ +E + Sbjct: 224 PAYGLNVYSMLKHDTLVLTRAALDLIESKL 253 >gi|323357371|ref|YP_004223767.1| ribosomal protein L4 [Microbacterium testaceum StLB037] gi|323273742|dbj|BAJ73887.1| ribosomal protein L4 [Microbacterium testaceum StLB037] Length = 220 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V DG+ G + + DIF +K ++ +V+ Q R G +K R EV+ G K Sbjct: 8 LDVVKADGKKAGSVELPADIFDVKTNIPLIHQVVVAQRAAARQGTHSTKRRGEVSGAGRK 67 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG AR S GGG GP P PKK+ + AL ALSD+ + Sbjct: 68 PFKQKGTGNARQGSIRAPHMTGGGIVHGPKPRDYSQRTPKKMIAAALLGALSDRARGQRL 127 Query: 124 MVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 ++D+ + TK +A +++ + D + RN+ +++L V +N Sbjct: 128 HIVDSFAIEGAPSTKAAAAALKAFGAVKNVLVVIERDDELTIKSVRNLAYVHVLTVGQLN 187 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD++ +V +K+A +A Sbjct: 188 TYDVVVSDDIVFTKAAYDAF 207 >gi|300690161|ref|YP_003751156.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum PSI07] gi|299077221|emb|CBJ49847.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum PSI07] Length = 206 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ +S S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D + KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMGLDSVLVITD-NLDENLYLASRNLAHVLVVEARH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|125986720|ref|XP_001357123.1| GA19152 [Drosophila pseudoobscura pseudoobscura] gi|195160102|ref|XP_002020915.1| GL14082 [Drosophila persimilis] gi|54645450|gb|EAL34189.1| GA19152 [Drosophila pseudoobscura pseudoobscura] gi|194117865|gb|EDW39908.1| GL14082 [Drosophila persimilis] Length = 293 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + + N+D G+I + D+FA +P+ ++ + WQ + + + +K R+EV Sbjct: 63 QAWIENIDAVAERKMGLIELHPDVFAAQPRVDVIQENIEWQRKYRYVSLAHAKTRAEVRG 122 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S F+GGG GP P + LP R + L LS K Sbjct: 123 GGRKPWPQKGMGRARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKL 182 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLL 176 +D+ VI+N+ +++ + +++I + N A ++ +NL+ Sbjct: 183 AQDDLHVIENVDIPTRDAQFIKDLIAERNWGPSVLIVDKEYMFPENICYATDDLGYVNLM 242 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P G+NVY +L+ LVL+ A++ LE R Sbjct: 243 PAFGLNVYSMLKHDTLVLTVDAVKHLEQRL 272 >gi|209521384|ref|ZP_03270097.1| ribosomal protein L4/L1e [Burkholderia sp. H160] gi|295677931|ref|YP_003606455.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002] gi|307731254|ref|YP_003908478.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1003] gi|323527601|ref|YP_004229754.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1001] gi|209498204|gb|EDZ98346.1| ribosomal protein L4/L1e [Burkholderia sp. H160] gi|295437774|gb|ADG16944.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002] gi|307585789|gb|ADN59187.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1003] gi|323384603|gb|ADX56694.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1001] Length = 206 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ +S S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEELL 205 >gi|91785464|ref|YP_560670.1| 50S ribosomal protein L4 [Burkholderia xenovorans LB400] gi|187925615|ref|YP_001897257.1| 50S ribosomal protein L4 [Burkholderia phytofirmans PsJN] gi|296163320|ref|ZP_06846081.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1] gi|123062495|sp|Q13TH1|RL4_BURXL RecName: Full=50S ribosomal protein L4 gi|226730632|sp|B2T750|RL4_BURPP RecName: Full=50S ribosomal protein L4 gi|91689418|gb|ABE32618.1| LSU ribosomal protein L4P [Burkholderia xenovorans LB400] gi|187716809|gb|ACD18033.1| ribosomal protein L4/L1e [Burkholderia phytofirmans PsJN] gi|295886459|gb|EFG66316.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1] Length = 206 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ +S S+ +F + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKILITKAAVAQIEELL 205 >gi|170032333|ref|XP_001844036.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus] gi|167872322|gb|EDS35705.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus] Length = 278 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 6/209 (2%) Query: 4 LSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + + NLD G+ +S ++F P+ I+ + + WQ + + + +K R+EV Sbjct: 50 VWIENLDTVEERKLGIQELSNEVFGATPRIDIVHQNVEWQRKYRYVSFAHAKTRNEVRGG 109 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G+ARH S +RGGG A GP P + LP R L L LS K Sbjct: 110 GRKPWPQKGLGKARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLA 169 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLLP 177 +D+ ++D+L ++L + + L +D + RN +I ++NL+P Sbjct: 170 QDDLHIVDSLDIPTDDPQFLRDLVQERAWGPSVLFVDSSDLMPRNITAGTESIDHVNLMP 229 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V G+NVY +L+ + LVL++ A E +E + Sbjct: 230 VYGLNVYSMLKHNTLVLTREAAEEIEAKL 258 >gi|326315225|ref|YP_004232897.1| 50S ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372061|gb|ADX44330.1| ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC 19860] Length = 206 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ I V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|209165351|gb|ACI41237.1| ribosomal protein L4 [Mycobacterium chelonae] Length = 199 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 1/192 (0%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + G I + ++F +L +V+ Q R G +K R V+ G K Y QKGTG Sbjct: 2 KTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGTG 61 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR S QF GGG GP P PKK+ + ALR ALSD+ + I I LV+ Sbjct: 62 RARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVA 121 Query: 132 -KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 +E TK + + +++ + D + RN+PN+++L +N YD+L+ Sbjct: 122 GQEPSTKSAKSFLAEISDRKQVLVVLGRDDLTSVKSVRNLPNVHVLAYDQLNTYDVLKAD 181 Query: 191 KLVLSKSAIEAL 202 +V S A+ Sbjct: 182 DVVFSVEALNGF 193 >gi|126662263|ref|ZP_01733262.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38] gi|126625642|gb|EAZ96331.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38] Length = 209 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V +++G++ G + +S+ +FA++P + + ++ +R G K+K R+EVA + Sbjct: 1 MEVKVLDINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGNHKAKERAEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSAKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSALSLKVNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++V+++ TK + ++L L N + ++N L++RN+ +++ Sbjct: 121 SNLVVVEDFTFDTPSTKNFINVLKSLGLDNKKSLFVLGDSNKNVYLSSRNLKASSVVTTS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL LVL + A++ +E Sbjct: 181 ELSTYAILNAKSLVLLEGAVDGIEANL 207 >gi|288801099|ref|ZP_06406555.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332033|gb|EFC70515.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 209 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 113/203 (55%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++E IF + P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLNINGQETGRKVTLNESIFGITPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPLLVGGGRVFGPKPRDYRFKLNKKVKTLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + IM++++ + KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 SAIMILEDFNLEAPKTKEFVNVVKNLKIDSKKVLLLLPEVNKNVYLSARNLQRSEVMLAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV ++ ++E + Sbjct: 181 TLNAYKVLNADVLVFTEKSLEVV 203 >gi|226226280|ref|YP_002760386.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27] gi|226089471|dbj|BAH37916.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27] Length = 213 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 1/198 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E + + G+ G + E F ++ + ++ +R G +K+K R EV Sbjct: 9 EAPLYSAQGKQGGTRQLPEGTFDGIVNVPVMHQAVKAFLANRRQGTAKTKTRGEVTGGNQ 68 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG FGP P +PK+VR LA + AL+ + N Sbjct: 69 KPWKQKGTGRARQGSTRAPNWPGGGTVFGPQPRSYTQIVPKQVRVLARKSALNARARENA 128 Query: 123 IMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK + F L L +++ + N L+ARN+ +++P Sbjct: 129 VVVVEALNFSAPKTKAMTELFTKLGVLGKKVLVLTDGVKPNVYLSARNLGQAHVMPYSDA 188 Query: 182 NVYDILRCSKLVLSKSAI 199 N Y IL +V+ SA+ Sbjct: 189 NTYHILWSDVVVIESSAL 206 >gi|322436545|ref|YP_004218757.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9] gi|321164272|gb|ADW69977.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 2/209 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V NL GE G + +++F + +L ++ R G + +K R V+ + Sbjct: 1 MANINVVNLGGEKVGEFDLLDEVFNAEINDALLWEAVKHYRAAMRQGTAATKVRKNVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P + PKK ALR A+S K Sbjct: 61 GKKLWKQKGTGRARVGSIRTPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSAISAKIQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPV 178 ++D+ E KTK L+ ++ +L+ L +RN+ + L+ Sbjct: 121 GKFTIVDSFEVPEAKTKLYRQALTKLETGKTTLLVESSRKLEEKLYLGSRNLQGVELVLS 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+LR V SK AIEA+++ K Sbjct: 181 SEVHPYDLLRYEHAVFSKDAIEAIQETLK 209 >gi|220917122|ref|YP_002492426.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1] gi|254803709|sp|B8J861|RL4_ANAD2 RecName: Full=50S ribosomal protein L4 gi|219954976|gb|ACL65360.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1] Length = 206 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ KT AL AL++D + + RN+ + L V+G Sbjct: 121 QKLVIVQEWKPGAPKTAAAAKVLSALGAKKALVVDDA-ANLALAKSVRNLHGSDFLAVEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LVL+ + LE Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205 >gi|284034001|ref|YP_003383932.1| 50S ribosomal protein L4/L1e [Kribbella flavida DSM 17836] gi|283813294|gb|ADB35133.1| ribosomal protein L4/L1e [Kribbella flavida DSM 17836] Length = 237 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 1/189 (0%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + ++F ++ ++ +V+ Q R G K K R EV+ G+K Y QKGTGRAR Sbjct: 18 GSAELPAELFDVQVNIPLIHQVVVAQLAAARQGTHKVKSRGEVSGGGAKPYRQKGTGRAR 77 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KE 133 S QF GGG GP P PKK+ + ALR ALSD+ + V++N V Sbjct: 78 QGSTRAPQFTGGGVVHGPTPRNYSQRTPKKMIAAALRGALSDRARDGRVFVVENFVDGDT 137 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 TK V + ++ + D L+ RN+P ++L+ +N YD+L +V Sbjct: 138 PSTKAAVKALTEITGLVKALVVIDRDDELTWLSLRNVPTVHLIAYDQLNAYDVLCSDAVV 197 Query: 194 LSKSAIEAL 202 +++A++ Sbjct: 198 FTRAALDGF 206 >gi|269468076|gb|EEZ79790.1| ribosomal protein L4 [uncultured SUP05 cluster bacterium] Length = 204 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V N+ VS+ IFA + ++ +V R G K RS V+ G Sbjct: 1 MKLKVLNVSTNKSSSTEVSDSIFARDYNESLVHQVTTAYMAGGRQGSKAQKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KKPWNQKGTGRARAGTSRGPIWRSGGVTFAAQPRSYAQKVNKKMYKGAISIIFSELVRSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ + K+ KTK + T +AL+L +AL++ +LD N L++RN+ ++ + Q I Sbjct: 121 RLKVVKDFEVKDAKTKNITTLLKALNLKDALLMTD-ELDENLYLSSRNLYHVGVCDTQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++++A++ +E Sbjct: 180 DPVSLIGYENVVMTEAALKKMEGML 204 >gi|163783268|ref|ZP_02178261.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] gi|159881376|gb|EDP74887.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] Length = 199 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 2/195 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G I V +++F +K ++ +L V++WQ +R G +K R EV Y+G K+ QKGTG Sbjct: 2 KIGRIEVKDEVFNVKVKKHVLWEVVKWQLASRRQGTHSTKTRGEVNYSGRKILPQKGTGN 61 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131 ARH + + GGG A GP P ++LPKKVR LAL+ ALSDK + +++++D + Sbjct: 62 ARHGDRGANILVGGGVAHGPRPRDYSYSLPKKVRKLALKMALSDKAQNKNVVIVDKIEIG 121 Query: 132 KECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 KTK + + + + +++ + D + RN+PN +LPV+G+NVYDIL Sbjct: 122 DTPKTKKALEFLKKKKIDSEKVLVVTPEKDELIMKSFRNLPNAKVLPVEGLNVYDILWSD 181 Query: 191 KLVLSKSAIEALEDR 205 KLV+ K A+E + R Sbjct: 182 KLVILKGALEGIYKR 196 >gi|157108533|ref|XP_001650271.1| 50S ribosomal protein L4 [Aedes aegypti] gi|108884031|gb|EAT48256.1| 50S ribosomal protein L4 [Aedes aegypti] Length = 279 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 6/209 (2%) Query: 4 LSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + + NLD + G+ +S ++F P+ I+ + + WQ + + S SK R+EV Sbjct: 51 VWIENLDTIEEQKLGIQQLSSEVFGAAPRIDIVHQNIEWQRKYRFVSFSHSKTRNEVRGG 110 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRARH S +RGGG A GP P + LP R L L LS K Sbjct: 111 GRKPWPQKGLGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFSRVLGLVSTLSIKLA 170 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLLP 177 +D+ ++ +L +YL + + L ID + RN A I +INL+P Sbjct: 171 QDDLHIVRDLDIPTEDPQYLRDLVQERAWGPSVLFIDSSDIMPRNISAGADEIDHINLMP 230 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 V G+NVY +L+ LVL+KSA E +E + Sbjct: 231 VYGLNVYSMLKHDTLVLTKSAAEEIESKL 259 >gi|225630300|ref|YP_002727091.1| ribosomal protein L4 [Wolbachia sp. wRi] gi|254803765|sp|C0R308|RL4_WOLWR RecName: Full=50S ribosomal protein L4 gi|225592281|gb|ACN95300.1| ribosomal protein L4 [Wolbachia sp. wRi] Length = 204 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ ++R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++DNL KT + + S+ LI+ D AA+N+ ++L+ G+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DIL ++L+K ++ LE R Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203 >gi|281422250|ref|ZP_06253249.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205] gi|281403755|gb|EFB34435.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205] Length = 209 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 110/203 (54%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV ++ G++ G +++++ +F ++P +L ++ +R G +KSK RSE++ + Sbjct: 1 MEVSVLDIKGQETGRKVALNDAVFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYRFKLNKKVKILARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I+++++ + KTK ++ + L + ++ + ++N L+ARN+ ++ Sbjct: 121 SAIVMLEDFTFEAPKTKEFLSIIKNLKIEGKKVLFVLPESNKNVYLSARNLQRAEVILAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L +V+++ ++E + Sbjct: 181 NVNSYKVLNADVVVITEKSLETI 203 >gi|145351929|ref|XP_001420312.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus lucimarinus CCE9901] gi|144580546|gb|ABO98605.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus lucimarinus CCE9901] Length = 224 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 77/203 (37%), Positives = 110/203 (54%), Gaps = 3/203 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V + DGE +G + + IF + + RV+RWQ + R G K+K R EVA + K Sbjct: 19 VPVYSFDGEARGSVELPGRIFDQPLRVDVAHRVVRWQRAKARKGLHKTKSRGEVAGSTRK 78 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG+GRAR + Q RGGG A GPV HALPKKVR + L+ ALS K + Sbjct: 79 VRPQKGSGRARVGNLKAPQMRGGGTAHGPVVRSHAHALPKKVRRMGLKVALSAKAAEGKL 138 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +V+D+ E KT+ + L L D +++ARN+P++ +LP G NV Sbjct: 139 IVVDSFAGMEPKTRAMKATLERLTGDLGL---AAGGDELVRMSARNLPHVEVLPQIGANV 195 Query: 184 YDILRCSKLVLSKSAIEALEDRF 206 Y ILR L+++KS +E L R Sbjct: 196 YSILRRRTLIVTKSGLEQLIARL 218 >gi|260807182|ref|XP_002598388.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae] gi|229283660|gb|EEN54400.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae] Length = 264 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ ++ E G++ + D+FA P+ IL R +RWQ ++I ++ R+E+ G K Sbjct: 32 TLGDIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKP 91 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGK GP P LP K R+L L+ AL+ K D+ Sbjct: 92 WPQKGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDL 151 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGI 181 ++D L +YL R + ++++ D N A+ + IN++P+ G+ Sbjct: 152 HIVDRLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEDIAENVCEASAQLNTINVMPLVGL 211 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY +L+ LVL+ ++ LE++ Sbjct: 212 NVYSMLKHDTLVLTLPCVQKLENKL 236 >gi|294341609|emb|CAZ90026.1| 50S ribosomal protein L4 [Thiomonas sp. 3As] Length = 206 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L N G+ VS ++F + ++ +++ R+G K R+ V ++ Sbjct: 1 MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + KK +R S Sbjct: 61 RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D + KTK + + +A+ + +II D N LAARN+PN+ ++ + Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADG-ADENLFLAARNLPNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + +L K++++K A+ L++ Sbjct: 180 ADPLSLLFYKKVMMTKGAVSQLQEML 205 >gi|282858373|ref|ZP_06267553.1| ribosomal protein L4/L1 family protein [Prevotella bivia JCVIHMP010] gi|282588821|gb|EFB93946.1| ribosomal protein L4/L1 family protein [Prevotella bivia JCVIHMP010] Length = 209 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ + KTK V + L + +++ +++++ L+ARN+ ++ Sbjct: 121 NAVVVVEDFNLEAPKTKDFVNITKNLKVDGKKVLLVLPEVEKSVYLSARNLKKAEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++++++ +++ Sbjct: 181 QVNSYKVLNADVLVVTENSLKVIDEIL 207 >gi|94500992|ref|ZP_01307517.1| Ribosomal protein L4 [Oceanobacter sp. RED65] gi|94426932|gb|EAT11915.1| Ribosomal protein L4 [Oceanobacter sp. RED65] Length = 200 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 105/199 (52%), Gaps = 1/199 (0%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67 +++ + ++VS+ FA + ++ +++ R G K RS+V+ G+K + Q Sbjct: 2 DINVQGGSTVTVSDVAFARDYNESLVHQLVTAYLAGARQGSKAQKNRSDVSGGGAKPWRQ 61 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR + +R GG F P L KK+ A++ S+ + ++V+D Sbjct: 62 KGTGRARAGTSRSPIWRTGGVTFAARPRNYEQKLNKKMYRAAMQAIWSELVRQDRLVVVD 121 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + + KTK ++ +DLSN L++D ++ +N LA+RN+P++ + G++ ++ Sbjct: 122 SFDVESHKTKAFASKLSDMDLSNVLVVD-SEVSQNVYLASRNLPHVAVAEATGVDPVSLV 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 K++++ A++ +E+ Sbjct: 181 SFEKVLVTVPALKKVEEML 199 >gi|195437861|ref|XP_002066858.1| GK24328 [Drosophila willistoni] gi|194162943|gb|EDW77844.1| GK24328 [Drosophila willistoni] Length = 296 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ I+ + WQ + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHAKTRAEVRGGGRKPWPQKGQGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S F+GGG GP P + LP R L L LS K +D+ +I++ Sbjct: 139 ARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESTDI 198 Query: 132 KECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRC 189 + +++ + LI+D + N A + +NL+P G+NVY +L+ Sbjct: 199 PTTEPQFIKDLIDERQWGPSVLIVDKADIFPENICYATDELGFVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ A++ LE R Sbjct: 259 DTLVLTVDAVKHLEQRL 275 >gi|148263141|ref|YP_001229847.1| 50S ribosomal protein L4 [Geobacter uraniireducens Rf4] gi|189029505|sp|A5GAW6|RL4_GEOUR RecName: Full=50S ribosomal protein L4 gi|146396641|gb|ABQ25274.1| LSU ribosomal protein L4P [Geobacter uraniireducens Rf4] Length = 207 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V ++ + G I +S+ +F + ++ ++ ++ Q +R G K RS VA + Sbjct: 1 MAKLDVFDIKNKKVGEIELSDSVFNDEVKEYLIHEAVKIQLANRRAGTVGVKNRSAVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG+AR + Q+ GGG AFGP ++ KK R A+R ALS F + Sbjct: 61 GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQAKTYNLSMNKKARRAAMRSALSLLFKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V++N+ TK V L L++ + +RN +L+ARN+ N+ +L +G Sbjct: 121 NKLTVLNNIDLDNVSTKNFVGILNGFTLDKTLVVTDVE-NRNLELSARNVKNVKVLKSEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 +N++DI++ ++ +++++ +E + Sbjct: 180 LNIFDIMKYQSVIFTENSVRKVEGALQ 206 >gi|186477587|ref|YP_001859057.1| 50S ribosomal protein L4 [Burkholderia phymatum STM815] gi|226730631|sp|B2JIG5|RL4_BURP8 RecName: Full=50S ribosomal protein L4 gi|184194046|gb|ACC72011.1| ribosomal protein L4/L1e [Burkholderia phymatum STM815] Length = 206 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N +G++ ++ S+ +F + ++ +++ R G K R +V +T Sbjct: 1 MELKLLNANGQEGAAVNASDVVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ L S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D L + KTK L +F+A+ L + L+I +D N LA+RN+ ++ ++ + Sbjct: 121 GRIAVVDELTLEAPKTKLLAEKFKAMGLDSVLVITDT-VDENLYLASRNLAHVAVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+ +E+ Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEELL 205 >gi|213962804|ref|ZP_03391064.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena Capno] gi|213954461|gb|EEB65783.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena Capno] Length = 209 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+++L KTK ++L L N I + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSIFVLPNTNNNVYLSSRNVPTSSVVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y ++ S +VL++S++ LE Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207 >gi|183601945|ref|ZP_02963314.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis HN019] gi|219682858|ref|YP_002469241.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis AD011] gi|241190434|ref|YP_002967828.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195840|ref|YP_002969395.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254803716|sp|B8DW14|RL4_BIFA0 RecName: Full=50S ribosomal protein L4 gi|183218830|gb|EDT89472.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis HN019] gi|219620508|gb|ACL28665.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis AD011] gi|240248826|gb|ACS45766.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250394|gb|ACS47333.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178158|gb|ADC85404.1| LSU ribosomal protein L1E [Bifidobacterium animalis subsp. lactis BB-12] gi|295793421|gb|ADG32956.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis V9] Length = 218 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 + L+V + +G++ G + E +F ++ ++ +V+ Q R G K R Sbjct: 4 VTLNVTDNNGKEAGTLEAPEALFGFTAEEVQAHVPLIHQVVVAQRAAARQGTHAVKNRGA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 V+ G K + QKGTGRAR S Q+ GG A GPVP PKK+++ ALR+ALSD Sbjct: 64 VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGVAHGPVPRDYSQRTPKKMKAAALRYALSD 123 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 + + + V+D TK + + N + + + N L+ RNIP + + Sbjct: 124 RANNGRVAVVD-FQLDAPSTKKAIAALAPVVADNFTTVVLSRDNVNEWLSVRNIPTVYPI 182 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK +EA Sbjct: 183 FADQLNTYDVITAQYVVFSKDGLEAF 208 >gi|220903935|ref|YP_002479247.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254803730|sp|B8IYH3|RL4_DESDA RecName: Full=50S ribosomal protein L4 gi|219868234|gb|ACL48569.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 210 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G ++++ D+F ++ + IL V R Q KR G K R+ V+ Sbjct: 1 MATVKVYDQNKQESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S +RGG FGP P + KVRSLAL+ ALS + + Sbjct: 61 GAKPWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +MV+ +V E KTK+ L L+ ALI+ + + + +ARNIP + L V Sbjct: 121 ESLMVVKGIVLPEAKTKHFAKVADTLGLTKALIV-APEENADLTRSARNIPGLTLTTVDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +IL+ +LVL + A+E+++ RF+ Sbjct: 180 LSVLEILKHKQLVLLEGAVESVQARFE 206 >gi|313677121|ref|YP_004055117.1| LSU ribosomal protein l4p [Marivirga tractuosa DSM 4126] gi|312943819|gb|ADR23009.1| LSU ribosomal protein L4P [Marivirga tractuosa DSM 4126] Length = 208 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELS+ GED G +S+S+ IF ++P + ++ + R G KSK R+E++ + Sbjct: 1 MELSILKHTGEDTGRKVSLSDAIFDIEPNDHAIYLDVKQKMANARQGTHKSKERAEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L KK++++A + AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPKDYSFKLNKKLKAVARKSALTYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ E KTK L L S ++ ++D+N L+ RNI N + V Sbjct: 121 QMISVLEGFTFNEVKTKNYTDMLNKLSLDSKKTLLVLPEVDKNIVLSGRNIKNTQVTTVD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N YD+L +L+ + ++E +E+ FK Sbjct: 181 SLNTYDVLHADQLLFVEGSLEKIENLFK 208 >gi|212704584|ref|ZP_03312712.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098] gi|212671983|gb|EEB32466.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098] Length = 207 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + ++ G +++S D+F ++ + IL V+R Q KR G +K R+ V+ Sbjct: 1 MATVKVYDQNKQECGELTLSADVFEVEARPEILNLVVRAQMAAKRAGTHMAKTRAFVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +RGG FGP P + KVR+LA++ ALS + + Sbjct: 61 GVKPWKQKGTGRARSGSNRSPVWRGGAIVFGPQPRDYSFKVNSKVRALAMKMALSSRLAA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ + E KTK+ L L+ ALI+ + +ARNIP I L Sbjct: 121 ENLLVVKGIELPEAKTKHFAKVAGTLGLNKALIVTAEE-SEALTRSARNIPGITLTTPDR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +ILR +LVL + A+ ++ RF+ Sbjct: 180 LSVLEILRHKQLVLLEGAVAPVQARFE 206 >gi|56417002|ref|YP_154076.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries] gi|222475370|ref|YP_002563787.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida] gi|81599118|sp|Q5PA59|RL4_ANAMM RecName: Full=50S ribosomal protein L4 gi|254803710|sp|B9KJ69|RL4_ANAMF RecName: Full=50S ribosomal protein L4 gi|56388234|gb|AAV86821.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries] gi|222419508|gb|ACM49531.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida] Length = 208 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 112/205 (54%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N+ E G + +S ++F ++ ++ +L V+ WQ ++R G K++ S+V+ T Sbjct: 1 MEVNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR L L+ ALS K + Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+ KT F + ++ + A RN+PN++LL GI Sbjct: 121 KLVVLDDSGLLLEKTADAHVAFGNFGAHGSYLVVAETYEDKVMCACRNLPNVDLLKYAGI 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ ++ LE R Sbjct: 181 NVLDILRHDCVILTVGTVKCLESRL 205 >gi|17547737|ref|NP_521139.1| 50S ribosomal protein L4 [Ralstonia solanacearum GMI1000] gi|46577281|sp|Q8XV13|RL4_RALSO RecName: Full=50S ribosomal protein L4 gi|17430042|emb|CAD16727.1| probable 50s ribosomal protein l4 [Ralstonia solanacearum GMI1000] gi|299065416|emb|CBJ36585.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Ralstonia solanacearum CMR15] Length = 206 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + DG+ +S S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D+L KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMGLDSVLVITD-NLDENLFLASRNLAHVLVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|256819983|ref|YP_003141262.1| 50S ribosomal protein L4 [Capnocytophaga ochracea DSM 7271] gi|256581566|gb|ACU92701.1| ribosomal protein L4/L1e [Capnocytophaga ochracea DSM 7271] Length = 209 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+++L KTK ++L L N + + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVLPNTNNNVYLSSRNVPTSSVVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y ++ S +VL++S++ LE Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207 >gi|253998015|ref|YP_003050078.1| 50S ribosomal protein L4/L1e [Methylovorus sp. SIP3-4] gi|253984694|gb|ACT49551.1| ribosomal protein L4/L1e [Methylovorus sp. SIP3-4] Length = 208 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL + + +G+ + VSE F + + ++ +V+ R GR V++T Sbjct: 1 MELKLIDKNGKPAKSGVEVSEVTFGREFNEALVHQVVVAYQANARTATRAQLGRGTVSHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR S +RGGG+AF P H + +KV +R LS+ Sbjct: 61 THKPWNQKGTGRARSGMSSSPIWRGGGRAFPNSPDENFSHKVNRKVYRAGMRSILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + VI+ V + KTK LV + + L +++ D N L+ARN+PN+ ++ Q Sbjct: 121 QDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARNLPNVLVVEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +V +K+A++ LE+ Sbjct: 181 YADPVSLVRFPNVVATKAAVKKLEEML 207 >gi|77165786|ref|YP_344311.1| ribosomal protein L4/L1e [Nitrosococcus oceani ATCC 19707] gi|109893612|sp|Q3J8R5|RL4_NITOC RecName: Full=50S ribosomal protein L4 gi|76884100|gb|ABA58781.1| LSU ribosomal protein L4P [Nitrosococcus oceani ATCC 19707] Length = 206 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 + L+V++L + + G+ +S+ +F + ++ +V+ + R G K RSE Sbjct: 1 MNLAVQSLAENSETGMTQLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR + +RGGG+AF P + +K+ A+R LS+ Sbjct: 61 GAKPFRQKGTGRARAGTIRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + +ID ++ + KT+ L + + + LI+ + DRN +L+ARNIP + + V Sbjct: 121 DRLRMIDKIMLSKPKTRDLAKLLKPITWRSVLIVV-AEDDRNLELSARNIPTVAIRNVSR 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ +++R ++++ AI E+ Sbjct: 180 VSPVELIRFDGVLVTGDAIRCFEESL 205 >gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group] Length = 273 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 11/201 (5%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N EDKG + + D+F + ++ I+ RV G +K SEV+ TG K Y Sbjct: 76 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRV----------GTHSTKTISEVSGTGRKPY 125 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + ++V Sbjct: 126 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 185 Query: 126 IDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L KTK +V + L++DG +D+ +LA +N+ +N+LP G+NVY Sbjct: 186 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 245 Query: 185 DILRCSKLVLSKSAIEALEDR 205 IL+ LV++++AI + +R Sbjct: 246 SILQHDTLVMTRNAINRIVER 266 >gi|88803749|ref|ZP_01119273.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P] gi|88780482|gb|EAR11663.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P] Length = 209 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G+D G + +S+D+F ++P + ++ +R G KSK R+E++ + Sbjct: 1 MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS + Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRDYSFKLNKSLKRLARKSALSIQAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++VI++ + KTK + ++L+L +L + + + N L++RN+ ++ Sbjct: 121 ENVIVIEDFNFETPKTKNFLDVLKSLELDTRKSLFVLSNE-NANVYLSSRNLKKSKVIKA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 + Y +L +KLV+++ ++E + Sbjct: 180 SELYTYGVLNTNKLVITEGSLEEIN 204 >gi|254483427|ref|ZP_05096656.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium HTCC2148] gi|214036301|gb|EEB76979.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium HTCC2148] Length = 205 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V D G +SVS+ FA + + ++ +V+ R G K R+ V+ G Sbjct: 1 MELNVVKAGNADAGKVSVSDVAFAKEYNEDLVHQVVTAYMAGSRQGTRAQKNRAAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + +K+ ALR +S+ Sbjct: 61 KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRTIMSELARQE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++L ++ KTK L+ + + NALI+ +++ N LA+RN+ +++ V G+ Sbjct: 121 RLVVVESLDLEQPKTKLLLEQLGGYGVDNALIV-SAEVNENLYLASRNLHKVDVRDVDGV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++ A++ LE+ Sbjct: 180 DPVSLIAHDKVIVTVDAVKKLEEML 204 >gi|302036666|ref|YP_003796988.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii] gi|300604730|emb|CBK41062.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii] Length = 207 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + G + + ++F KP ++ + Q R G + + R EV+ + Sbjct: 1 MPIVDVVDSKKKKVGTVDLPSEVFGCKPHVPLVHEAVVMQRACDRQGTASTLRRGEVSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S +R GG FGP P +P+K AL+ ALS K Sbjct: 61 GKKPWKQKHTGRARAGSLRSPVWRHGGTVFGPKPRSYAFGMPRKKYRAALQSALSAKALE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ +L + KTK L L +S ++ + + A RN+ I +L + Sbjct: 121 GNVVVVSDLTINQAKTKLLANALTQLGISGTALLVVGDANSHLVQAGRNLSGITILRPEE 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+LRC L++ +S + +++ + Sbjct: 181 LNVYDVLRCHSLIIPQSELNRVKEVW 206 >gi|288925714|ref|ZP_06419646.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17] gi|288337652|gb|EFC76006.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17] Length = 209 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV ++ G++ G ++++E I+ L+P + +L ++ +R G +KSK RSE+ + Sbjct: 1 MEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEINGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR GGG+ FGP P L KKV+ LA + ALSDK Sbjct: 61 TRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK + + L + ++ ++N L+ARN+ ++P Sbjct: 121 NAIVVVEDFDIETPKTKDFINIAKNLKVDGRKTLLLLPTANKNVYLSARNLQRTEVMPAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L LV+++SA++ +++ Sbjct: 181 MLNSYKVLNADVLVIAESALKVIDEIL 207 >gi|160895841|ref|YP_001561423.1| 50S ribosomal protein L4 [Delftia acidovorans SPH-1] gi|226730650|sp|A9BPR9|RL4_DELAS RecName: Full=50S ribosomal protein L4 gi|160361425|gb|ABX33038.1| ribosomal protein L4/L1e [Delftia acidovorans SPH-1] Length = 206 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + + ++ +++ R G K R +V +T Sbjct: 1 MQLELLNEQGQAASKFDAPETVFGREFNEDLVHQIVIAYRANARQGTRAQKDREQVRHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 +K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMVAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLESVMVI-AEEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K AI+ L++ F+ Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMFE 206 >gi|121592713|ref|YP_984609.1| 50S ribosomal protein L4 [Acidovorax sp. JS42] gi|222109494|ref|YP_002551758.1| 50S ribosomal protein l4 [Acidovorax ebreus TPSY] gi|166234627|sp|A1W2Q8|RL4_ACISJ RecName: Full=50S ribosomal protein L4 gi|254803732|sp|B9MB74|RL4_DIAST RecName: Full=50S ribosomal protein L4 gi|120604793|gb|ABM40533.1| LSU ribosomal protein L4P [Acidovorax sp. JS42] gi|221728938|gb|ACM31758.1| ribosomal protein L4/L1e [Acidovorax ebreus TPSY] Length = 206 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L + ++I ++D N LA+RN+ N+ + + Sbjct: 121 GRLAVVDSLKLDTPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVTEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|42520529|ref|NP_966444.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Drosophila melanogaster] gi|46577161|sp|P61071|RL4_WOLPM RecName: Full=50S ribosomal protein L4 gi|42410268|gb|AAS14378.1| ribosomal protein L4 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 204 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ ++R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++DNL KT + + S+ LI+ D AA+N+ ++L+ G+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DIL ++L+K ++ LE R Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203 >gi|255536153|ref|YP_003096524.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium 3519-10] gi|255342349|gb|ACU08462.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium 3519-10] Length = 209 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + + E IF ++P Q + ++ +R G KSK RSE+ + Sbjct: 1 MELTVFNTSGKETGRSVQLDEAIFGIEPNQHAVYLEVKQYLAAQRQGTHKSKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ FRGGG+ FGP P L K ++ LA + LS K Sbjct: 61 TRKLKKQKGSGSARYGDIKSPTFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V++ KTK + AL + + ++N L++RN+P +L Sbjct: 121 NSIKVLEAFNFDAPKTKEFINLNNALGFEGKKSLYILPEANKNVYLSSRNLPKTTVLTYN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ YD++ ++V + AIE ++ + Sbjct: 181 EISSYDLVHAGEIVFLEGAIEKFQENLR 208 >gi|282860811|ref|ZP_06269877.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE] gi|282564547|gb|EFB70083.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE] Length = 216 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK + T F + + L++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGGISTKAVKTLFGKISERSNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A E+ Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202 >gi|225011648|ref|ZP_03702086.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A] gi|225004151|gb|EEG42123.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A] Length = 209 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N++G++ G I + + +F ++P + ++ KR G K+K R+E+ + Sbjct: 1 MELNVLNIEGKETGRKIKLDKAVFGIEPNDHAIYLDVKQHLANKRQGTHKAKERAEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P + KKV+ LA ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRDYSQKVNKKVKRLARMSALSIKANQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ + +TK + AL L I+ +L++N L++RN+ N ++ Sbjct: 121 KSIVVLEDFQMDQPQTKNYLKMLAALGLADKKSILVLGELNKNVYLSSRNLKNSKVVINS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y I + L+ S+ AI LE Sbjct: 181 ELNTYSISNANSLIFSEGAIAGLESLL 207 >gi|288803934|ref|ZP_06409357.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica D18] gi|288333567|gb|EFC72019.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica D18] Length = 209 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 114/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGSGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + S +++ ++++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y +L +V+++++++ +++ Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207 >gi|317125871|ref|YP_004099983.1| 50S ribosomal protein L4P [Intrasporangium calvum DSM 43043] gi|315589959|gb|ADU49256.1| LSU ribosomal protein L4P [Intrasporangium calvum DSM 43043] Length = 212 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 1/186 (0%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++ DIF ++ ++ +V+ Q R G +K R EV G K Y QKGTGRAR S Sbjct: 10 NLPADIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPYRQKGTGRARQGS 69 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 QF GGG GP P PKK++ ALR ALSD+ + I V+D++V + + Sbjct: 70 TRAPQFAGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARFDRIHVVDSIVGGDAPSA 129 Query: 138 YLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 A L++ + D + RN+PN+++L +N YD+L +V ++ Sbjct: 130 KAALALLAGLTDRPNLLVVIERGDEVAFKSVRNLPNVHVLVADQLNTYDVLCADDIVFTQ 189 Query: 197 SAIEAL 202 +A++A Sbjct: 190 AALDAF 195 >gi|315225402|ref|ZP_07867216.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea F0287] gi|314944675|gb|EFS96710.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea F0287] Length = 209 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N+ G++ G +++S+ +F ++P ++ ++ KR G K+K R+EVA + Sbjct: 1 MEVAVLNIKGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L K V+ LA R ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKLQN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+++L KTK ++L L N + + N L++RN+P +++ Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVLPNTNNNVYLSSRNVPTSSVVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y ++ S +VL++S++ LE Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207 >gi|148243216|ref|YP_001228373.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307] gi|147851526|emb|CAK29020.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307] Length = 210 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + +++ G++ G S+ + ++ R + Q R G + + RSEV G Sbjct: 1 MNCVIQDWQGKEAGKASLDLKVAKETSAADLIHRAVVRQLANARQGTASTLTRSEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S GGG FGP P + +K R LALR AL S Sbjct: 61 RKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYELDMNRKERRLALRTALMS--RSE 118 Query: 122 DIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLP 177 D++V+ + KTK +++ + + +++ + N +L+ RN+P + L+ Sbjct: 119 DMVVVKAFGDKLAKPKTKEVLSALERWGVPAGSKVLMVLADISDNVRLSVRNLPQLKLIA 178 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L KLV+S+ A+ +++ + Sbjct: 179 ADQLNVFDLLNAQKLVVSEDALTKIQEVY 207 >gi|254412295|ref|ZP_05026070.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC 7420] gi|196181261|gb|EDX76250.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC 7420] Length = 205 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 6/204 (2%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 RN GE+ G ++ + I+ R L Q R G + +K R+EV G K + Sbjct: 2 RNWQGEEVGQATLELKVAKEDSASHIVHRALVRQMTNARQGTASTKTRAEVRGGGRKPWR 61 Query: 67 QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126 QKGTGRAR S +RGGG FGP P + +K R LALR AL + D++V+ Sbjct: 62 QKGTGRARAGSNRSPLWRGGGIIFGPKPRDYNLKMNRKERRLALRTALQGRA--EDMIVV 119 Query: 127 DNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 + KTK L+ + +++ Q + L+ARN+P+I L+ +N Sbjct: 120 EEFADQLPRPKTKDLMDAIARWGIDPKQKVLLILPQPAQQVYLSARNVPSIKLIYADSLN 179 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VYD+L K+V + +A+ +++ + Sbjct: 180 VYDVLNADKIVTTNTALAKIQEVY 203 >gi|94312247|ref|YP_585457.1| 50S ribosomal protein L4 [Cupriavidus metallidurans CH34] gi|166199851|sp|Q1LI38|RL4_RALME RecName: Full=50S ribosomal protein L4 gi|93356099|gb|ABF10188.1| 50S ribosomal subunit protein L4 [Cupriavidus metallidurans CH34] Length = 206 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +++ R G K K R EV +T Sbjct: 1 MELKLLQDNGQIGAGVAASAEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D KTK L +F+A+ L + LII LD N LA+RN+PN+ ++ + Sbjct: 121 GRINVVDGFAVDAPKTKLLADKFKAMGLDSVLIITD-NLDENLYLASRNLPNVAVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|254383171|ref|ZP_04998525.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1] gi|194342070|gb|EDX23036.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1] Length = 216 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 102/202 (50%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G+ G + + +IF K ++ +V+ Q R G K+K R EV Sbjct: 1 MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARH 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+ +V TK T F + +++ + D L+ARN+P +++L Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNVLLVVERADEAAWLSARNLPQVHILEPGQ 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +++A+E+ Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202 >gi|187930363|ref|YP_001900850.1| 50S ribosomal protein L4 [Ralstonia pickettii 12J] gi|241664531|ref|YP_002982891.1| 50S ribosomal protein L4 [Ralstonia pickettii 12D] gi|309782835|ref|ZP_07677555.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA] gi|226730711|sp|B2UEL8|RL4_RALPJ RecName: Full=50S ribosomal protein L4 gi|187727253|gb|ACD28418.1| ribosomal protein L4/L1e [Ralstonia pickettii 12J] gi|240866558|gb|ACS64219.1| ribosomal protein L4/L1e [Ralstonia pickettii 12D] gi|308918259|gb|EFP63936.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA] Length = 206 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G+ ++ S ++F + ++ +V+ R G K K R EV +T Sbjct: 1 MELKLLQDNGQLGAGVAASPEVFGRDYNEALVHQVVVAYQANARSGNRKQKDREEVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R S Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+D+L KTK L +FRA+ L + L+I LD N LA+RN+ ++ ++ + Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMGLDSVLVITD-NLDENLFLASRNLAHVLVVEPRH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ K++++K+A+ +E+ K Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206 >gi|291613237|ref|YP_003523394.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1] gi|291583349|gb|ADE11007.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1] Length = 206 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N +G+ I+ S+D+F + + ++ +++ R SK KGRSE+A + Sbjct: 1 MELKVINENGKAGASINASDDLFGREYNETLVHQLVTAYQANARSANSKQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P + +K+ L S Sbjct: 61 RKPFAQKGTGRARAGMASSPLWRGGGKIFPNSPDQNYTQKINRKMYRAGLASIYSQLVRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D L KTK L + +A+ L LII +D N L++RN+PN+ ++ Sbjct: 121 GRLSVVDALSVDAPKTKLLAQKIKAMGLDRVLIITDS-MDENLYLSSRNLPNVLVVEAHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R ++V+++ A+ +E+ Sbjct: 180 ADPVSLVRFPQVVVTRGALAKIEELL 205 >gi|307565141|ref|ZP_07627649.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A] gi|307346172|gb|EFN91501.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A] Length = 209 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 111/203 (54%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E+IF ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENIFGIEPNNHVLYLAVKQYLAAQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+++ KTK V + L + +++ + ++N L+ARN+ ++ Sbjct: 121 NAVVVVEDFKLDTPKTKDFVNITKNLKVDGKKVLLVLPEAEKNVYLSARNLKKSEVMIAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +L LV+++++++ + Sbjct: 181 QLNSYKVLNADVLVITENSLKVI 203 >gi|195475362|ref|XP_002089953.1| GE19365 [Drosophila yakuba] gi|194176054|gb|EDW89665.1| GE19365 [Drosophila yakuba] Length = 296 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G+I + D+FA +P+ ++ + WQ + + + +K R+EV G K + QKG GR Sbjct: 79 KVGLIELHPDVFAAQPRVDLIQENVEWQRKYRYVSMAHTKNRAEVRGGGRKPWPQKGGGR 138 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH S +GGG GP P + LP R L L LS K +D+ +I+N+ Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198 Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + +L + +++I N A+ ++ +NL+P G+NVY +L+ Sbjct: 199 PTRDSDFLKDLIAERNWGPSVLIVDDDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258 Query: 190 SKLVLSKSAIEALEDRF 206 LVL+ +A++ LE R Sbjct: 259 DTLVLTVAAVKHLEQRL 275 >gi|58584598|ref|YP_198171.1| 50S ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497927|sp|Q5GSU5|RL4_WOLTR RecName: Full=50S ribosomal protein L4 gi|58418914|gb|AAW70929.1| Ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 204 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + NL D G ++ IF+++ + IL ++RWQ ++R G K KG S+V+ T Sbjct: 1 MECKLVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGP+ ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYSQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++++NL KT + + S+ LI+ + + AARN+ +NL+ G+ Sbjct: 121 QVIILNNLNINVKKTSEMCKYIQNFKFSSFLIVGDYE--DSLLRAARNLHYVNLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DIL ++L+ A+ LE R Sbjct: 179 NVFDILNHECIMLTSDALRYLEGRL 203 >gi|194334860|ref|YP_002016720.1| 50S ribosomal protein L4 [Prosthecochloris aestuarii DSM 271] gi|226730706|sp|B4S5M6|RL4_PROA2 RecName: Full=50S ribosomal protein L4 gi|194312678|gb|ACF47073.1| ribosomal protein L4/L1e [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G IS+ + +FA K + + ++ KR G K K RSEV Sbjct: 1 MELKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + +K++ LA R ALS K Sbjct: 61 GKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+VI++ ++ KT+ + L L ++ + + + RNIP +N+ Sbjct: 121 GRIIVIEDFTFEQIKTRQFADILKNLGLDQKKTLVLLPEHNEIINRSGRNIPVLNIRVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL C +V+ K+A++ +E+ Sbjct: 181 QASTYDILDCQTVVMQKAAVKKIEETL 207 >gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17] gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17] Length = 208 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V++ G D I +++++F L P+ IL RV+ WQ ++R ++ R++VA +G Sbjct: 1 MKVKVQSFAGTDAADIELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG G ARH + F GGGKA G L KKVR+L L+ ALS + Sbjct: 61 KKLGRQKGGGVARHGDRRAPVFIGGGKAHGARVRDFNPGLNKKVRALGLKMALSSHAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L + KTK L L AL+IDG ++ +F LAA N+ IN+LP G Sbjct: 121 SLIVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDGDAVETSFALAAGNLKEINVLPAAG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL++SA+E LE RF Sbjct: 181 ANVYDILKHDTLVLTRSAVEKLEARF 206 >gi|258648158|ref|ZP_05735627.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC 51259] gi|260852039|gb|EEX71908.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC 51259] Length = 209 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N+ GED G ++E +F ++P + ++ +R G +KSK RSE++ + Sbjct: 1 MEISVFNIKGEDTGRKAVLNEAVFGIEPNDHAIYLDVKQYLAAQRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GG + FGP P L KK+++LA R ALS K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGARVFGPRPRNYAFKLNKKLKALARRSALSYKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ + KTK V L +S +++ + ++N L+ARN+ L + Sbjct: 121 NSIVVLEDFTMETPKTKAFVEILNNLKVSEKKVLVILPEANKNVFLSARNLEGAKLAIAK 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN Y++L LV+++ ++E ++ Sbjct: 181 DINTYNVLDAGALVITERSLEDIDAVL 207 >gi|260061898|ref|YP_003194978.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501] gi|88786031|gb|EAR17200.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501] Length = 209 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +++D+F ++P + + ++ +R G K+K R+E+A + Sbjct: 1 MKVAVLDIKGKETGRKAELADDVFKIEPNEHAIYLDVKQYLAHQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K + Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSLKSQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V+++ KT+ + +AL L +I + + + L++RN ++ Sbjct: 121 NAITVVEDFSFDTPKTRDFIDVLKALGLEDKKSLIVLGEQNNSVYLSSRNFKGAEVVTNT 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 ++ Y I+ + +VL++ A+E + Sbjct: 181 ELSTYKIMNANNVVLTEGALEGI 203 >gi|319761139|ref|YP_004125076.1| ribosomal protein l4/l1e [Alicycliphilus denitrificans BC] gi|330822997|ref|YP_004386300.1| 50S ribosomal protein L4/L1e [Alicycliphilus denitrificans K601] gi|317115700|gb|ADU98188.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans BC] gi|329308369|gb|AEB82784.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans K601] Length = 206 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI+ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205 >gi|260222804|emb|CBA32728.1| 50S ribosomal protein L4 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 206 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G+ E +F + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNEQGQATSKYDAPEAVFGRDYNEDLVHQVVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFGQKINKKMYRAGMASILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKVESPKTKALAAKFKAMNLESVLVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPLSLVHYRKVLVTKAAMDTLKEMF 205 >gi|74316424|ref|YP_314164.1| 50S ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259] gi|109893658|sp|Q3SLP8|RL4_THIDA RecName: Full=50S ribosomal protein L4 gi|74055919|gb|AAZ96359.1| ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259] Length = 205 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V N GE ++ S++ F + ++ +V+ R G + R+EV+ + Sbjct: 1 MDLTVINDRGEQVASVAASDETFGRDYNEALVHQVVTAFQANARSGNRAQQTRAEVSAST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG F P H + +K+ L LS Sbjct: 61 HKPWRQKGTGRARSGRASSPIWRGGGVTFPNKPNENFTHKVNRKMYRAGLAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L + KTK L + +++ +II +D N L++RN+PN+ ++ Sbjct: 121 GKLKVVESLGIESPKTKLLAGKLKSMGYGKVMIIADA-IDDNLWLSSRNLPNVYVVEPHQ 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 + + +++ ++++K+AI+ E+ Sbjct: 180 ADPWSLVKFGNVLITKAAIKQFEEM 204 >gi|308178135|ref|YP_003917541.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117] gi|307745598|emb|CBT76570.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117] Length = 200 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K RSEV+ G K + QKGTGRAR Sbjct: 7 VELPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKDRSEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135 S GGG GP P PKK+++ ALR ALSD+ + + VI+NLV+ + Sbjct: 67 SIRAPHMTGGGIVHGPTPRDYSQRTPKKMKAAALRGALSDRARFDRVHVIENLVAGDKPS 126 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK + R++ L++ + + L+ RN+ N+++L V +N YD+L +V + Sbjct: 127 TKDALATLRSVTERKNLLVVIDRANDVAALSVRNLVNVHVLYVDQLNTYDVLVSDDVVFT 186 Query: 196 KSAIEALEDR 205 K+A +AL + Sbjct: 187 KAAFDALVQK 196 >gi|119961638|ref|YP_948656.1| ribosomal protein L4 [Arthrobacter aurescens TC1] gi|119948497|gb|ABM07408.1| ribosomal protein L4 [Arthrobacter aurescens TC1] Length = 205 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 6 KVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S GGG GP P PKK+++ ALR ALSD+ + I VI LV+ + Sbjct: 66 GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVIAELVAGTKP 125 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 K + RA+ L++ + + L+ RN+ I++L +N YD+L +V Sbjct: 126 SAKEALASLRAVSERKNLLVVIERANDVAALSVRNLAGIHVLYADQLNTYDVLISDDVVF 185 Query: 195 SKSAIEAL 202 +K+A EA Sbjct: 186 TKAAFEAF 193 >gi|303256451|ref|ZP_07342465.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium 1_1_47] gi|331000645|ref|ZP_08324298.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT 11859] gi|302859942|gb|EFL83019.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium 1_1_47] gi|329570857|gb|EGG52568.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT 11859] Length = 206 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G+ ++ ++ +F + + ++ +++ R+G R V ++ Sbjct: 1 MELKVVNDQGQQTATLAAADTVFGREYNEALVHQIVVAYQANARLGTRAQLTREAVHHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+AF P + KK+ A+ LS Sbjct: 61 RKPWRQKGTGRARAGMSSSPVWRGGGRAFPNTPDENFTQKVNKKMMRGAMACILSKLAID 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++N+ KTK + +A+ L++ALII ++ N LA+RN+ N+ ++ + Sbjct: 121 GRLVVVENIDVDTPKTKNFANKLKAMGLNSALIITD-EISENLDLASRNLKNVWVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++K+AI LE+ + Sbjct: 180 ADPVSLVHFDSVVVTKAAISKLEEMW 205 >gi|44210|emb|CAA29705.1| unnamed protein product [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + G + I++++ ++ ++P Q + + Q R G K K R+EV+ G Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S Q++GG FGP P I + KKVR+LA R LS K Sbjct: 61 RKPWKQKGTGLARQGSIRAPQWKGGEVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + TK +V + L + + +I + + ++ NI + + Sbjct: 121 NNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KL++++ A A+E+ + Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207 >gi|171060668|ref|YP_001793017.1| 50S ribosomal protein L4 [Leptothrix cholodnii SP-6] gi|226730682|sp|B1Y8I6|RL4_LEPCP RecName: Full=50S ribosomal protein L4 gi|170778113|gb|ACB36252.1| ribosomal protein L4/L1e [Leptothrix cholodnii SP-6] Length = 206 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +FA + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQATAKVDAPDTVFARDYNESLIHQIVVAYQANARQGTRAQKDREQVHHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ + S Sbjct: 61 KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNSPDENFTQKVNKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VID++ KTK L + +A++L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVIDSITLDAPKTKLLAAKLKAMNLDHVLVI-ADEVDENLFLASRNLANVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+AI+ L++ F Sbjct: 180 ADPLSLVFYKKILVTKAAIDKLQEMF 205 >gi|313206394|ref|YP_004045571.1| LSU ribosomal protein l4p [Riemerella anatipestifer DSM 15868] gi|312445710|gb|ADQ82065.1| LSU ribosomal protein L4P [Riemerella anatipestifer DSM 15868] gi|315023665|gb|EFT36669.1| LSU ribosomal protein L4p (L1e) [Riemerella anatipestifer RA-YM] gi|325336161|gb|ADZ12435.1| Ribosomal protein L4 [Riemerella anatipestifer RA-GD] Length = 209 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N+ G++ G +S+ E IF ++P Q + ++ +R G K+K RSE+ + Sbjct: 1 MELVVLNIQGKETGRKVSLDEAIFGIEPNQHAVYLEIKQYLAAQRQGTHKAKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ F+GGG+ FGP P L K ++ LA + LS K Sbjct: 61 TKKLKKQKGSGSARYGDIKSPVFKGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N++ V+++ + KTK + AL L + + ++N L++RN+P ++ Sbjct: 121 NNVKVLEDFSFETPKTKEFINVVNALGLEGKKSLFVLGEANKNVYLSSRNLPKAKVMNFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ YD++ ++V + A+E ++ + Sbjct: 181 EISSYDLVNAGEVVFLEGAVEKFQENLR 208 >gi|317401538|gb|EFV82167.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans C54] Length = 205 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ S + IF + ++ +++ R G K RSEV ++ Sbjct: 1 MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRSEVKHST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 60 KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + I V+++ + KTK + ++L L + LII +D N LA RN+P++ ++ + Sbjct: 120 DRIAVVESFDLESPKTKAAAAKLKSLGLDSVLIITD-NVDENVYLATRNLPHVAVVEPRY 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AI LE+ Sbjct: 179 ADPLSLVHYKKVLITKPAIAQLEEML 204 >gi|325954993|ref|YP_004238653.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922] gi|323437611|gb|ADX68075.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922] Length = 209 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 114/209 (54%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E++V N++G++ G +S+ E +F ++P + ++ +R G K+K R+EVA + Sbjct: 1 MEVAVLNIEGKETGRKVSLDEAVFGVEPSTHTVWLEVKQYLAAQRQGTHKAKERNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K + LA + LS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKAQKRLAKKSVLSQKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 N+I VI++ + +TK + + L L +L + G + ++N L++RN+ ++ Sbjct: 121 NEIKVIEDFSFEAPRTKEFINVLKGLGLEGKRSLFVLG-EPNKNVYLSSRNLQKTKVVNN 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 +N+YD++ S++V + ++ ++D + Sbjct: 180 SELNIYDMINASQIVFFEGSLATIQDNLR 208 >gi|88854681|ref|ZP_01129347.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1] gi|88815842|gb|EAR25698.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1] Length = 219 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 2/204 (0%) Query: 1 MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + V + G+ + + +IF ++ ++ +V+ Q R G + R EV+ Sbjct: 1 MATSIDVLDAKGKKVDSVELPAEIFDVQTNVPLIHQVVVAQRAAARQGTHNTLRRGEVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 +G K + QKGTGRAR S Q +GGG GP P PKK+ + ALR LSD+ Sbjct: 61 SGRKPFKQKGTGRARQGSIRAPQMKGGGIVHGPHPRDYSQRTPKKMIAAALRGTLSDRAR 120 Query: 120 SNDIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I VID + + TK ++ + S +++ + D + RNI +++L Sbjct: 121 GERIHVIDAFAVEGKPSTKTVLALLNNIAPSKHVLVVLERDDATSIKSIRNIDAVHVLTF 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V SK A +A Sbjct: 181 DQLNAYDVVVSDDIVFSKGAFDAF 204 >gi|325269534|ref|ZP_08136150.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608] gi|324988153|gb|EGC20120.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608] Length = 209 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 111/203 (54%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++++E++F ++P +L ++ +R G +KSK RSE A + Sbjct: 1 MDINVLDIKGQETGRKVTLNENVFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR + GGG+ FGP P L KKV+ LA + AL+ K Sbjct: 61 TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK V + L + +++ +++N L+ARN+ ++ Sbjct: 121 NAIVVVEDFDFDAPKTKDFVNIAKNLKVDGKKILLLLPGVEKNVYLSARNLQKTEVMTAA 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y IL LV+++++++ + Sbjct: 181 QVNSYKILNADVLVVTENSLKVI 203 >gi|220913431|ref|YP_002488740.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6] gi|219860309|gb|ACL40651.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6] Length = 206 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135 S GGG GP P PKK+ + ALR ALSD+ + I V+ +LV + Sbjct: 67 SIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVADLVEGTKPS 126 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K + R + L++ + + L+ RN+ +++L +N YD+L +V + Sbjct: 127 AKTALATLRGVSDRKNLLVVIERANDVAALSVRNLAGVHVLYADQLNTYDVLVSDDVVFT 186 Query: 196 KSAIEAL 202 K+A EA Sbjct: 187 KAAYEAF 193 >gi|332041524|gb|EGI77884.1| 50S ribosomal protein L4 [Hylemonella gracilis ATCC 19624] Length = 206 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +F + + ++ +++ R G K R+ V ++ Sbjct: 1 MQLELLNEQGQASSKLEAPDTVFGREYNEALVHQIVVAFQANARQGTRAQKDRATVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F P + KK+ + S Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++L KTK L +F+A+ L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVESLKVDSPKTKALAAKFKAMKLDSVLVI-ADEVDENLYLASRNLANVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ + Sbjct: 180 ADPLSLVHYRKVLVTKAAVDQLKEMY 205 >gi|326385098|ref|ZP_08206768.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395] gi|326196183|gb|EGD53387.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 1/204 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L VRN DG + G + + ++F + ++ +V+ Q R G +K R +VA G+ Sbjct: 10 TLDVRNADGTNNGTVDLPAELFDVTANIALMHQVVVAQQAAGRQGTHSTKTRGQVAGGGA 69 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P + KKV++ ALR ALSD+ + Sbjct: 70 KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYTQKVNKKVKAAALRGALSDRARNER 129 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+ LV+ + TK L ++ + D N+ N+ + + Sbjct: 130 IHVVTELVAGQTPSTKAARKFLELLSDRRKFLVVVSREDVTAWKGVANLGNVLPIAPDQL 189 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+L ++V S + A ++ Sbjct: 190 NTYDVLDSDEVVFSVETLNAFIEQ 213 >gi|284040620|ref|YP_003390550.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74] gi|283819913|gb|ADB41751.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74] Length = 209 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N GED G +++ E++F+++P Q + ++ +R G K+K R+E A++ Sbjct: 1 MEVIVYNSKGEDTGKKVTLPEEVFSIEPNQHAIYLDVKQYLANQRQGTHKAKERAENAHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG FGP P L KKV++LA + A + K + Sbjct: 61 TRKLKKQKGTGGARAGSAKSPVFVGGGTIFGPRPRDYSFKLNKKVKALARQSAYAVKAKA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I VID++ + +TK + L++ ++ ++ N L++RN+ + Sbjct: 121 EKISVIDSIALEAPRTKDYIQFLNDLNVTGKKTLLILPDVNTNVVLSSRNVQKAKVTTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 +N YD++ +L++S+ A+ ++ Sbjct: 181 QVNTYDLMNADQLLISEEALSTIQ 204 >gi|103488294|ref|YP_617855.1| 50S ribosomal protein L4 [Sphingopyxis alaskensis RB2256] gi|123252916|sp|Q1GPA0|RL4_SPHAL RecName: Full=50S ribosomal protein L4 gi|98978371|gb|ABF54522.1| LSU ribosomal protein L4P [Sphingopyxis alaskensis RB2256] Length = 208 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 123/205 (60%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LDG+ I +++D+F L + IL RV+ WQ ++R ++ RS+VA TG Sbjct: 1 MKIKVQTLDGKAGADIDLNDDVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP H+L KK+R+L L+ ALSDK Sbjct: 61 KKFGRQKGGGTARHGDRRAPIFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++VID L K+ KTK L + LDL AL IDG + +F +A+ N+ ++ LP G Sbjct: 121 KLVVIDTLELKDAKTKALAGKLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 NVYDI+R LVL+++A+E LE R Sbjct: 181 ANVYDIVRADTLVLTRAAVEKLEAR 205 >gi|89902554|ref|YP_525025.1| 50S ribosomal protein L4 [Rhodoferax ferrireducens T118] gi|109893628|sp|Q21RV9|RL4_RHOFD RecName: Full=50S ribosomal protein L4 gi|89347291|gb|ABD71494.1| LSU ribosomal protein L4P [Rhodoferax ferrireducens T118] Length = 206 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G E +F + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGLATAKYEAPETVFGRAYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D++ KTK L +F+A++L + L+I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSMKVDSPKTKPLAAKFKAMNLESVLVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A+E L++ F Sbjct: 180 ADPVSLVHYRKVIVTKAAMEKLQEMF 205 >gi|256420660|ref|YP_003121313.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588] gi|256035568|gb|ACU59112.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588] Length = 212 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + N +G+ G I + E+IF ++P ++ ++ +R G K K R+EV Sbjct: 1 MQVDILNKEGKKTGRTIELPEEIFGVEPNNHVIYLAVKQYLAAQRQGTHKVKTRAEVKGA 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG +R + ++GGG FGP P L +KV+ LA ALS K Sbjct: 61 SRKLHKQKGTGGSRKGNIRNPLYKGGGTIFGPKPHKYDIKLNRKVKDLAKISALSTKAKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 N I+V+++L KTK L + + + + N L+ RNIP ++ + Sbjct: 121 NSIIVVEDLTLDTPKTKAFAGILNNLKVNVSGRKTLFVLPEYNDNVYLSLRNIPTVDSVM 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 + IN Y+I+ + LV ++SA + + Sbjct: 181 LSDINTYEIMNSNVLVFTESAAKIFTE 207 >gi|325964165|ref|YP_004242071.1| 50S ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3] gi|323470252|gb|ADX73937.1| LSU ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3] Length = 207 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 VDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 66 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135 S GGG GP P PKK+ + ALR ALSD+ + I V+ LV + Sbjct: 67 SIRAPHMTGGGIVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVEGSKPS 126 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 +K + R + L++ + + L+ RN+ +++L +N YD+L +V + Sbjct: 127 SKAALATLRGVSERKNLLVVIERANDVAALSVRNLDGVHVLYADQLNTYDVLVSDDVVFT 186 Query: 196 KSAIEAL 202 K+A +A Sbjct: 187 KAAYDAF 193 >gi|302877802|ref|YP_003846366.1| 50S ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2] gi|302580591|gb|ADL54602.1| ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2] Length = 207 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N G + S+++F + ++ +++ R G SK K R E+A + Sbjct: 1 MELKVINDKGLSTANLVASDEVFGRGYNEDLVHQLVTAYQANARAGNSKQKSRCEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F + +K+ LS Sbjct: 61 RKPFAQKGTGRARAGMASSPLWRGGGKIFPNTGEENYTQKVNRKMYRAGFAAILSKLVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++VID+L KTK L + + L ++ +++ +D N L++RN+PN+ +L Sbjct: 121 SRLVVIDDLTVDAPKTKLLADKIKNLGIAGRVLVITDSMDENLYLSSRNLPNVLVLEAYQ 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +V+++ A+ +E+ F Sbjct: 181 ADPVSLVRFPSVVVTRGAVAKIEEMF 206 >gi|212550450|ref|YP_002308767.1| 50S ribosomal protein L4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226730614|sp|B6YQ84|RL4_AZOPC RecName: Full=50S ribosomal protein L4 gi|212548688|dbj|BAG83356.1| 50S ribosomal protein L4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 208 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+++ N+ GE+ G + + + +F ++P I+ +R KR G +KSK RSE++ + Sbjct: 1 MEVNIFNIKGEETGRKVILEDSVFRVEPNDYIVYLDVRRYLANKRQGTAKSKERSEMSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GG + FGP P L KK + +A R LS + Sbjct: 61 TRKLGRQKGSGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKEKKMARRSVLSCRMRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++V+++ + KTK + + L + ++ L++ + D N L+ARNI + + Sbjct: 121 GGVIVVEDFSFETPKTKEFLDLAKNLKIQIANSKLLVILPEKDDNIFLSARNISKVKVTT 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 V +N Y+IL ++LV+ +S++ A+ Sbjct: 181 VSNLNTYEILDVNRLVILESSVVAIN 206 >gi|116671520|ref|YP_832453.1| 50S ribosomal protein L4P [Arthrobacter sp. FB24] gi|116611629|gb|ABK04353.1| LSU ribosomal protein L4P [Arthrobacter sp. FB24] Length = 205 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 6 KVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S GGG GP P PKK+ + ALR ALSD+ + I V+ LV+ + Sbjct: 66 GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVAGTKP 125 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 K + R + L++ + + L+ RN+ ++++L +N YD+L +V Sbjct: 126 SAKEALATLRGVSERKNLLVVIERANDVAALSVRNLADVHVLYADQLNTYDVLVSDDVVF 185 Query: 195 SKSAIEAL 202 +K+A EA Sbjct: 186 TKAAYEAF 193 >gi|117927516|ref|YP_872067.1| 50S ribosomal protein L4P [Acidothermus cellulolyticus 11B] gi|117647979|gb|ABK52081.1| LSU ribosomal protein L4P [Acidothermus cellulolyticus 11B] Length = 220 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V D + + D+F ++ ++ +V+ Q R G K++ R EV+ Sbjct: 1 MTTVTVAGTD----RTVELPADVFDVQVNVPLIHQVVVAQLAAARQGTHKTRTRGEVSGG 56 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP+P PKK+++ ALR AL+D+ + Sbjct: 57 GKKPYRQKGTGRARQGSIRAPQFTGGGVVHGPMPRHYDQRTPKKMKAAALRGALTDRARA 116 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFR-ALDL-SNALIIDGCQLDRNFQLAARNIPNINLLP 177 I V+ +V + TK + R AL +++ + D + RNIP+++LL Sbjct: 117 GRIHVLPRIVDGEAPSTKQALEALRTALGTERRRVLVVLDRGDETGWKSLRNIPDVHLLV 176 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V ++ A+ Sbjct: 177 ADQLNAYDVLSSDDVVFTEQALSEF 201 >gi|300775015|ref|ZP_07084878.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC 35910] gi|300506830|gb|EFK37965.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G++ G +++ E +F ++P Q + ++ +R G K+K RSE+ + Sbjct: 1 MELVVLNTSGKETGRKVTLDETVFGIEPNQHAVYLEVKQYLAAQRQGTHKAKERSEITAS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR+ FRGGG+ FGP P L K ++ LA + LS K Sbjct: 61 TKKLKKQKGSGSARYGDIKSPVFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V++++ KTK + AL+L+ + + ++N L++RN+P ++ Sbjct: 121 NSIKVLEDMSFAAPKTKDFINVLNALELNGKKSLFVLPEANKNVYLSSRNLPKAKVMNFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ YD++ +++ + A+E ++ K Sbjct: 181 EISSYDLVNAGEIIFFEGAVEKFQENLK 208 >gi|307823443|ref|ZP_07653672.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96] gi|307735428|gb|EFO06276.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96] Length = 206 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 1/197 (0%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 + + G + V+E IF + ++ +++ R G K RS+V+ G+K + QKG Sbjct: 10 EQDSSGSLEVAEAIFGQSFNETLVHQLVVRHLAGARAGTKAQKTRSDVSGGGAKPWRQKG 69 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 TGRAR + +R GG AF P L KK+ + +R LS+ N ++V +++ Sbjct: 70 TGRARSGTTRSPVWRTGGVAFAARPRNYEQKLNKKMFRVGVRSILSELLRQNRLVVSNDI 129 Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + KTK L R + +D LI+ +D N LA+RNIP + ++ ++ ++ Sbjct: 130 LPSSPKTKELNARIKNIDAKRILIVV-ENVDANLALASRNIPYVEVIEAINLSPVLLVSA 188 Query: 190 SKLVLSKSAIEALEDRF 206 K++ + A++ +E+R Sbjct: 189 DKVIATPGALKQIEERL 205 >gi|237653995|ref|YP_002890309.1| 50S ribosomal protein L4 [Thauera sp. MZ1T] gi|237625242|gb|ACR01932.1| ribosomal protein L4/L1e [Thauera sp. MZ1T] Length = 206 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + S+ +F + ++ +V+ R G K KGRSE+A + Sbjct: 1 MELKLLNDQGQAASTLEASDVLFGRDYNEALVHQVVTAYLANARSGNRKQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGGK F P + +K+ + LS Sbjct: 61 RKPFRQKGTGNARAGMASSPLWRGGGKIFPSSPDENFSQKVNRKMYRAGVAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V++N + KT+ L + + + L + L+I ++D N L++RN+ + +L V Sbjct: 121 DRLAVVENFSVEAPKTRLLSQKLKGMGLDSVLVITD-EIDENLFLSSRNLHQVLVLEVSE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++R K++++K A+ +E+ ++ Sbjct: 180 ADPVSLVRFPKVLVTKGALAKMEEAWQ 206 >gi|190571547|ref|YP_001975905.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018949|ref|ZP_03334756.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226731443|sp|B3CN27|RL4_WOLPP RecName: Full=50S ribosomal protein L4 gi|190357819|emb|CAQ55275.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995058|gb|EEB55699.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 204 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E + +L + G + ++ IF+ K + IL ++RWQ ++R+G K+KG S+V+ T Sbjct: 1 MECELVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGGG FGPV ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+D+L KT + + S+ LI+ D AA+N+ ++L+ G+ Sbjct: 121 QVVVLDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DIL ++L+K ++ LE R Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203 >gi|88812756|ref|ZP_01128002.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231] gi|88789994|gb|EAR21115.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231] Length = 201 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +R E G + VSE F + ++ ++ +V+ R G K R+ V G Sbjct: 1 MELPLR----EGAGAVQVSERTFGAEFKEPLIHQVVVAYLAGGRAGSKAQKDRAAVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR S +RGGG++F P + +K+ ALR LS+ Sbjct: 57 AKPWRQKGTGRARAGSIRSPLWRGGGRSFASAPRDHSQKVNRKMYRGALRAILSELVRQE 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V++ + KTK L+ +L ++ LI+ + N +LAARN+ +++ + Sbjct: 117 RLCVMERFDLAQPKTKLLLDELGSLGFADVLIV-SNEPSENVRLAARNLAAVDVWETNRL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N +LR K++L+ A+ LE+ Sbjct: 176 NPVVLLRHEKVLLTVDAVHRLEEWL 200 >gi|121608244|ref|YP_996051.1| 50S ribosomal protein L4 [Verminephrobacter eiseniae EF01-2] gi|166199922|sp|A1WHC6|RL4_VEREI RecName: Full=50S ribosomal protein L4 gi|121552884|gb|ABM57033.1| LSU ribosomal protein L4P [Verminephrobacter eiseniae EF01-2] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + V E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQGASRLDVPETVFGREYNEALVHQIVVAYQANARQGTRAQKDRGQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P H + KK+ + S Sbjct: 61 RKPFKQKGTGNARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMSAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V++++ KT+ L +F+A++L + ++I ++D N LAARN+ N+ ++ + Sbjct: 121 GRLAVVESIKLDSPKTRVLADKFKAMNLQSVMVI-ADEVDENLYLAARNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K++++K AI+ L++ F Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLQEMF 205 >gi|257069507|ref|YP_003155762.1| 50S ribosomal protein L4 [Brachybacterium faecium DSM 4810] gi|256560325|gb|ACU86172.1| LSU ribosomal protein L4P [Brachybacterium faecium DSM 4810] Length = 312 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + + IF ++ ++ +V+ Q R G K+K R+EV G Sbjct: 6 TVDVLDPAGKKSGSVELPASIFDVQTNVPLIHQVVVAQQAAARQGTHKAKTRAEVRGGGK 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ + Sbjct: 66 KPWKQKGTGRARQGSLRAPQFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARNGR 125 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ + L TK + + L++ + D L++RN+P ++L + Sbjct: 126 VHVVSSLLEGDVASTKAVRQTLSNVSDRRHLLVVVRRDDDLGALSSRNLPTTHVLYADQV 185 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD++ +V + A+E Sbjct: 186 NTYDVMLSDDVVFTAGALEDF 206 >gi|241765218|ref|ZP_04763201.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN] gi|241365098|gb|EER59977.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNDQGQAASKFEAPETVFGREYNEDLVHQIVVAYQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGG+ F +P + KK+ + LS Sbjct: 61 KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMSAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK L +F+A++L + ++I ++D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLVNVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R K++++K AI+ L++ F Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLKEMF 205 >gi|332107867|gb|EGJ09091.1| 50S ribosomal protein L4 [Rubrivivax benzoatilyticus JA2] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ + + +FA + ++ +V+ R G R EV ++ Sbjct: 1 MQLELLNEQGQATAKVDAPDTVFARDYNEALVHQVVVAYQANARQGTRAQLDRGEVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P H + KK+ + LS Sbjct: 61 KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNRPDENFSHKVNKKMYRAGMASILSQLARD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L + +A+ L + ++I Q+D N LA+RN+ N+ ++ + Sbjct: 121 GRLAVVDSLTVDAPKTKLLAQKLKAMGLESVMVI-ADQIDDNLALASRNLANVLVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K AIE L++ F Sbjct: 180 ADPLSLVFYKKVLVTKGAIEQLKEMF 205 >gi|328787688|ref|XP_001120958.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Apis mellifera] Length = 280 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 6/209 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ + NLD + G++ + D++ P+ I+ + ++WQ + + + +K RSEV Sbjct: 51 EVWLENLDTIERKKLGLMFLHPDVYGTAPRIDIIHQNVQWQKMYRFVSYAHTKVRSEVRG 110 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKG GRARH S +RGGG GP P + LP R L LS K Sbjct: 111 GGKKPWRQKGLGRARHGSIRSPLWRGGGVIHGPRSPTTHFYMLPFYNRVNGLTSTLSVKL 170 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ +I +L ++ Y+ + L +D + N A I ++NL+ Sbjct: 171 AQDDLYIIKDLEIPSNESSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHVNLM 230 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDR 205 PV G+NVY +L+ LVL++ A +ED+ Sbjct: 231 PVYGLNVYSMLKHDTLVLTERAARLIEDK 259 >gi|319952195|ref|YP_004163462.1| lsu ribosomal protein l4p [Cellulophaga algicola DSM 14237] gi|319420855|gb|ADV47964.1| LSU ribosomal protein L4P [Cellulophaga algicola DSM 14237] Length = 210 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G I +S+ ++ ++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDIKGKETGRSIELSDAVYGIEPNKHAVYLDVKQYLAHQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNLKRLARKSALSIKTNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ KTK ++L L N + + N L++RN+ ++ Sbjct: 121 KAILVVEDFNFDAPKTKDFKNVLKSLGLENKKSLFVLGDSNNNVYLSSRNLKGSEVITNS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y IL + +VL + ++E +E Sbjct: 181 DLSTYKILNANNIVLLEGSLEGIESNL 207 >gi|321468499|gb|EFX79483.1| hypothetical protein DAPPUDRAFT_52198 [Daphnia pulex] Length = 258 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 6/209 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 ++ V N+D E G+I + ++FA +P+ I+ +RWQ + + + +K EV Sbjct: 28 QVWVSNMDTVEEEKLGLIDLHPEVFAERPRLDIIHENVRWQQLYRHVSYAHTKMSYEVRG 87 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K QKG+GR+RH S + GGG GP P + L R LR LS K Sbjct: 88 GGRKPRPQKGSGRSRHGSIRSPIWVGGGVVHGPRSPKPYFYMLGFNARLNGLRSTLSAKL 147 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQ-LDRNFQLAARNIPNINLL 176 +D+ ++++L KYL + L +D + N A+ + NL+ Sbjct: 148 AQDDLHIVESLDIPTDDPKYLEALVEERGWGPSVLFVDDHDIMPLNITAASDAYGHYNLM 207 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDR 205 PV G+NV+ +L+ + LV++ SA+E LE+R Sbjct: 208 PVYGLNVFSMLKHTTLVMTLSAVERLEER 236 >gi|239817872|ref|YP_002946782.1| 50S ribosomal protein L4 [Variovorax paradoxus S110] gi|319796216|ref|YP_004157856.1| ribosomal protein l4/l1e [Variovorax paradoxus EPS] gi|259491580|sp|C5CP52|RL4_VARPS RecName: Full=50S ribosomal protein L4 gi|239804449|gb|ACS21516.1| ribosomal protein L4/L1e [Variovorax paradoxus S110] gi|315598679|gb|ADU39745.1| ribosomal protein L4/L1e [Variovorax paradoxus EPS] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L + N G+ E +F + ++ +++ R G K R +V ++ Sbjct: 1 MQLELLNEQGQAASKYDAPETVFGRDYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFSQKINKKMYRAGMAAIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L RF+A++L + L+I ++D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLTVDSPKTKPLAARFKAMNLESVLVI-AEEVDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K A++ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKGAVDKLKEMF 205 >gi|146329829|ref|YP_001210150.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A] gi|166234663|sp|A5EX81|RL4_DICNV RecName: Full=50S ribosomal protein L4 gi|146233299|gb|ABQ14277.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A] Length = 202 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ N ISV++ +F+ + ++ +V+ R G K ++EV+ G Sbjct: 1 MEIQFTN----TADRISVADSVFSAAYNEPLIHQVVVAYLAGARQGTKAQKTKAEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GGK F P V + +K+ AL S+ Sbjct: 57 VKPWKQKGTGRARAGSIRSPLWRTGGKIFAAKPRSYVQKVNRKMYRSALCSIFSELNRIG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + ++ L E KTK + + + L++ + N LA+RN+PN+ ++ VQ I Sbjct: 117 RFIAVNALELTEPKTKSFLKLMQDHAFGDDLLLITESENINIFLASRNLPNVTVIDVQEI 176 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N +L+ K+++ K+A+E + + Sbjct: 177 NPALLLKHEKVIVDKAALEKINEWL 201 >gi|119899705|ref|YP_934918.1| 50S ribosomal protein L4 [Azoarcus sp. BH72] gi|166234632|sp|A1KB26|RL4_AZOSB RecName: Full=50S ribosomal protein L4 gi|119672118|emb|CAL96032.1| 50S ribosomal protein L4 [Azoarcus sp. BH72] Length = 206 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + N G+ + S+ +FA + + ++ +V+ R G KGRSE+A + Sbjct: 1 MELKLLNEQGQPASTLDASDVLFAREYNEALVHQVVTAYLANARSGNRAQKGRSEIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTG AR S +RGGGK F P + +K+ + LS Sbjct: 61 RKPFRQKGTGNARAGMASSPLWRGGGKIFPNSPDENFSQKVNRKMYRAGVAAILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + + V+DN + KT+ L + + + L + L+I LD N L++RN+ + +L V Sbjct: 121 DRLAVVDNFSVEAPKTRLLAEKLKGMGLDSVLVITDG-LDENLFLSSRNLHKVLVLDVHE 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + ++R K++++K A+ +E+ ++ Sbjct: 180 TDPVSLVRFPKVLVTKGALAKMEEAWQ 206 >gi|171700382|gb|ACB53363.1| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142] Length = 188 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 6/180 (3%) Query: 31 GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90 +L R + R G + +K R+EV G K + QKGTGRAR S +RGGG F Sbjct: 9 HLLHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIF 68 Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKECKTKYLVTRFRALDL 148 GP P + +K R LALR A+ + D++V++N + KTK L + + Sbjct: 69 GPKPRDFSLKMNRKERRLALRTAIGSRV--EDMIVVENFAEQLPQPKTKELASALTRWGV 126 Query: 149 S--NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + + D N L+ARN+ ++ +L +NVYD+L K+V++ AI +++ + Sbjct: 127 EPTQKVALVLVETDANIYLSARNLCHVKILRADSLNVYDLLDADKIVITSEAISKIQEVY 186 >gi|163840905|ref|YP_001625310.1| LSU ribosomal protein L4/L1 family protein [Renibacterium salmoninarum ATCC 33209] gi|162954381|gb|ABY23896.1| LSU ribosomal protein L4/L1 family [Renibacterium salmoninarum ATCC 33209] Length = 226 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF ++ +L +V+ Q R G K+K R+EV+ G K + QKGTGRAR Sbjct: 7 KVELPAEIFDVQTNVPLLHQVVVAQLAAARQGTQKTKTRAEVSGAGRKPFKQKGTGRARQ 66 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S GGG GP P PKK+++ ALR ALSD+ + I V+ LV+ + Sbjct: 67 GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNERIHVVAELVAGTKP 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 K + R + L++ + + L+ RN+ +I++L V +N YD+L +V Sbjct: 127 SAKEALATLRGVSERKNLLVVIERANDVAALSVRNLADIHVLYVDQLNTYDVLISDDVVF 186 Query: 195 SKSAIEAL 202 +K+A EA Sbjct: 187 TKTAYEAF 194 >gi|313472594|ref|ZP_07813083.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 1153] gi|313448951|gb|EFR61269.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii 1153] Length = 178 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 2/175 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 N+++V+D L KTK L++ + +++ + N QL+ARN+ + L Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLETLRL 173 >gi|194335446|ref|YP_002017240.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1] gi|194307923|gb|ACF42623.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1] Length = 212 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + ++ +DIF + + + ++ +R G KSK R EV Sbjct: 5 MELKVLNTGGTETGEVVTLRDDIFGAEISEHAMYLDVKSILANRRQGTHKSKTRGEVRGG 64 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K QKGTG AR S GGG FGPVP + KKV+ LA R ALS K + Sbjct: 65 GRKPLRQKGTGNARQGSSRSPLNIGGGTIFGPVPHAYDQKVNKKVKLLARRSALSSKAKA 124 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+VI++ V + KTK + L L ++ D + +NI +N++ Sbjct: 125 GQIVVIEDFVFENIKTKPFAQILKNLGLAEKKTLMLTPGYDLIIARSGKNIAALNIMTAD 184 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL L++ K+A++ +ED Sbjct: 185 KASTYDILHSHTLLVQKTALKKIEDTL 211 >gi|108761551|ref|YP_631499.1| 50S ribosomal protein L4 [Myxococcus xanthus DK 1622] gi|122388945|sp|Q1D774|RL4_MYXXD RecName: Full=50S ribosomal protein L4 gi|108465431|gb|ABF90616.1| ribosomal protein L4 [Myxococcus xanthus DK 1622] Length = 207 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LD + I +S+D+F +P + V + Q +R G K S V+ Sbjct: 1 MAKFDVVDLDLKKVSEIELSDDVFGTEPNAHLFYEVAKMQQINRRRGTVGVKNTSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S S + GGGKA P + P+KVR AL+ ALS + Sbjct: 61 GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALKSALSLRAQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++D K+K + L L NAL+ID + + N + RN+ ++LP + Sbjct: 121 KTLIILDGFSLDAPKSKQAFEVLTKRLKLQNALVIDD-KGNTNLHRSVRNLAKFDVLPPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 G+N+ +LR S LVL+ +A + LE Sbjct: 180 GLNLEAVLRHSHLVLTSAAAKTLE 203 >gi|52840575|ref|YP_094374.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603556|sp|Q5ZYP2|RL4_LEGPH RecName: Full=50S ribosomal protein L4 gi|52627686|gb|AAU26427.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 202 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+E++ + + + ++++IFA +G++ + + R G S K RSEV+ Sbjct: 1 MMEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGG 56 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 GKKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRT 116 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+ + KTK + + +++SNALII ++ N L +RN+ + ++ V Sbjct: 117 GNLVVVSDFQCDNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTT 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 I+ +LR K+V++++AI+ +E++ + Sbjct: 176 IDPVSLLRFEKVVVTEAAIKKIEEQLQ 202 >gi|37519655|ref|NP_923032.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421] gi|46577179|sp|Q7NPG9|RL4_GLOVI RecName: Full=50S ribosomal protein L4 gi|35210646|dbj|BAC88027.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421] Length = 213 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M S+++ G G + + + + ++ + Q R G + + R EV Sbjct: 1 MATCSIKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP P + +K R LALR AL + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRLALRTALQSRV-- 118 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+D KT+ LV F + S ++++ + N L+ARN+PN+ + Sbjct: 119 EDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKV 178 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV D+L +V++ A+E +++ + Sbjct: 179 ITAGNLNVRDLLATDWIVVTGPALELIKETY 209 >gi|7674307|sp|Q9ZI49|RL4_AQUPY RecName: Full=50S ribosomal protein L4 gi|4165866|gb|AAD08786.1| ribosomal protein L4 [Aquifex pyrophilus] Length = 199 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G + V +D+F +K ++ +L V++WQ ++R G +K R EVAY+G K+ QKGTG Sbjct: 2 KIGDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGN 61 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131 ARH + V+ F GGG A GP P + LPKKVR L L+ ALSDK ++ IM +DN+ Sbjct: 62 ARHGERGVNIFVGGGVAHGPKPRDYEYPLPKKVRKLGLKMALSDKAQNDAIMFVDNIDLG 121 Query: 132 KECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 ++ KTK V + L + L+I + + + RN+ N+ +L +G+NVYD+L + Sbjct: 122 EQPKTKKAVEFLKNLGVDKETLLIVIPEKNEVLYKSFRNLQNVRVLLPEGLNVYDVLWAN 181 Query: 191 KLVLSKSAIEAL 202 KLV+ K ++ + Sbjct: 182 KLVIHKECLDRI 193 >gi|332170560|gb|AEE19815.1| ribosomal protein L4/L1e [Krokinobacter diaphorus 4H-3-7-5] Length = 209 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +S+ +F ++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKIAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKGLKRLARRSALTIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I VI++ KTK V +AL L N +I + + N L++RN+ ++ Sbjct: 121 NAITVIEDFNLDAPKTKDFVNVLKALGLENKKSLIVLGESNNNVYLSSRNLKTAKVVKSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y I+ + +V + ++E +E Sbjct: 181 ELSTYGIMNANNVVFLEGSLEGVEANL 207 >gi|300742056|ref|ZP_07072077.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567] gi|311111972|ref|YP_003983194.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC 17931] gi|300381241|gb|EFJ77803.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567] gi|310943466|gb|ADP39760.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC 17931] Length = 205 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF + +L +V+ Q R G K+K R EV+ G K + QKGTG AR Sbjct: 7 KVDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQ 66 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S GGG GP P PKK+ + ALR ALSD+ + I V++N +S + Sbjct: 67 GSIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRIHVVENFISGETP 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK F L ++ + + L+ARN+ +++L +N YD+L +V Sbjct: 127 STKAAKAAFAELTDRKNVLFVIDRAEDVLALSARNLQKVHVLYADQLNTYDVLVSDDVVF 186 Query: 195 SKSAIEAL 202 +K+A +A Sbjct: 187 TKAAYDAF 194 >gi|91200668|emb|CAJ73719.1| strongly similar to 50S ribosomal protein L4 [Candidatus Kuenenia stuttgartiensis] Length = 203 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ V N +G+ + V + I + +L V++ KR G +K R+EV+ G Sbjct: 1 MEIIVYNDEGKKIENMQVPDSISDSPVRYKLLRDVVKMYEANKRQGTVSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TG+AR S +RGGG AFGP P +++PK + AL ALS K N Sbjct: 61 KKPWAQKHTGKARAGSSRSPIWRGGGVAFGPKPRDYSYSIPKMAKKQALFSALSSKIKDN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +++V+D L KTK++V+ ++ + + +I + + ++RNIP + ++ Sbjct: 121 EVVVVDKLDFASPKTKHMVSLLKSFGMVGISSLIVISKATESLLKSSRNIPYVRMMECHD 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y+IL+ K++++K A+ +L Sbjct: 181 LNAYEILKPKKILITKQALSSL 202 >gi|88657712|ref|YP_507228.1| 50S ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas] gi|109893594|sp|Q2GH55|RL4_EHRCR RecName: Full=50S ribosomal protein L4 gi|88599169|gb|ABD44638.1| ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas] Length = 205 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 118/205 (57%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++ N++ + G I ++ IF++ + IL V+ WQ ++R G K+K +++ T Sbjct: 1 MEVNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LIID +++ + RN+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIKNFEHKSFLIID-KDYNKSVVCSCRNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV DILR ++L+ A++ LE+R Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204 >gi|227541711|ref|ZP_03971760.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51866] gi|227182526|gb|EEI63498.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51866] Length = 226 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 1/202 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V DG+ G + + ++F K +L +V+ Q R G +K R EV+ G K Sbjct: 6 LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S F GGG A GP P PKK+++ AL ALS++ + I Sbjct: 66 PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125 Query: 124 MVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I +V+ + TK T ++ +++ + D+ +L+ RN+P + + I Sbjct: 126 HAITEVVAGQNPSTKAARTFLESITDRKNVLVVVGREDQTSRLSVRNLPGVRFCGPEQIT 185 Query: 183 VYDILRCSKLVLSKSAIEALED 204 +D+L+ ++ S ++ + Sbjct: 186 TFDVLKADDVIFSVESLHKFIE 207 >gi|227487122|ref|ZP_03917438.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51867] gi|227092780|gb|EEI28092.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC 51867] Length = 226 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 1/202 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V DG+ G + + ++F K +L +V+ Q R G +K R EV+ G K Sbjct: 6 LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S F GGG A GP P PKK+++ AL ALS++ + I Sbjct: 66 PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125 Query: 124 MVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I +V+ ++ TK T ++ +++ + D+ +L+ RN+P + + I Sbjct: 126 HAITEVVAGQKPSTKAARTFLESITDRKNVLVVVGREDQTSRLSVRNLPGVRFCGPEQIT 185 Query: 183 VYDILRCSKLVLSKSAIEALED 204 +D+L+ ++ S ++ + Sbjct: 186 TFDVLKADDVIFSVESLHKFIE 207 >gi|299139131|ref|ZP_07032307.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8] gi|298598811|gb|EFI54973.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8] Length = 222 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 3/209 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++V NL G G + +++FA + + +L ++ R G +K R V+ Sbjct: 1 MANINVVNLTGAKVGEFEL-DEVFAGEVNEALLWEAVKHYRASLRQGTHATKNRKLVSGA 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +RGGG GP P +A P+K ALR A++ K Sbjct: 60 GKKLWKQKGTGRARVGSIRTPLWRGGGTVHGPQPRSYEYAFPRKKLMGALRSAIASKIAD 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALII-DGCQLDRNFQLAARNIPNINLLPV 178 V++N E KTK T L+ AL++ QL L +RN+ + L+ Sbjct: 120 GKFTVVENFDVSEGKTKLYRTALNKLEAKKTALLVETSQQLSEKLYLGSRNLQGVELVLS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+L+ + SKSA+EAL++ K Sbjct: 180 SEVHPYDLLKYEHAIFSKSALEALQETLK 208 >gi|254430668|ref|ZP_05044371.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001] gi|197625121|gb|EDY37680.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001] Length = 211 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +R+ G++ G + + ++ R + Q R G + + R+EVA Sbjct: 1 MAHCVIRDWQGKEAGKADLDLKVAKESSATDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRSYALAMNRKERRLALRTALMSRV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 DI V+ KTK + L + +++ + + RN+ + L+ Sbjct: 119 EDITVVKGFGAGLDTPKTKEITAALTRLGIEAGAKVLVILDNASEAVRKSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KLV+S+ A+ +++ + Sbjct: 179 AADQLNVFDLLHANKLVVSEEALAKIQEVY 208 >gi|225873077|ref|YP_002754536.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196] gi|254803706|sp|C1F641|RL4_ACIC5 RecName: Full=50S ribosomal protein L4 gi|225791588|gb|ACO31678.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196] Length = 222 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 3/210 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFA-LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M + V +L G+ G + +++++FA + + +L ++ R G +K + V+ Sbjct: 1 MANVDVLDLGGKKVGSLELADELFAPSEVNEALLWEAVKHYRASLRQGTHATKNKKLVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 +G K++ QKGTGRAR S +R GG GP P +A PKK ALR AL+ K Sbjct: 61 SGKKLWKQKGTGRARVGSVRSPLWRHGGTVHGPQPRSYDYAFPKKKLMGALRSALAAKLA 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLP 177 ++V+++ E KTK T L+ + + ++ L N L ARN+ N+ L+ Sbjct: 121 DGKLIVVESFEVSEPKTKLYRTALDKLEANRSTLLVESSQSLTENLYLGARNLANVELVL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ YD+LR + + S++AIE L++ + Sbjct: 181 NNEVHPYDLLRYERAIFSRAAIEKLQESLQ 210 >gi|328955913|ref|YP_004373246.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2] gi|328456237|gb|AEB07431.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2] Length = 208 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 1/195 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N +G ++ ++ ++P I+ +++ Q R G +K R EV Sbjct: 1 MSKIEVKNAEGSKVTETELASAVYGIEPNIHIMHHIVKCQMACWRRGTQSTKSRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+R GG FGP P + K LA+R ALS K Sbjct: 61 GRKPWRQKGTGRARQGSIRAGQWRHGGVIFGPKPRSYAKRMNNKEVKLAMRSALSAKLRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++V+D+ + TK + R+L+L L I + D N L+ RNIP ++ Sbjct: 121 DELVVVDDYGFDKPSTKAAMRLIRSLELEGKRLTIIVREDDVNAYLSFRNIPRTFIITPN 180 Query: 180 GINVYDILRCSKLVL 194 N +D++ L++ Sbjct: 181 EANTHDLVNNGALLM 195 >gi|317968818|ref|ZP_07970208.1| 50S ribosomal protein L4 [Synechococcus sp. CB0205] Length = 211 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + R+EVA Sbjct: 1 MANCVVRDWQGKEAGKASLDLKVAKESSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSRAA- 119 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 DI V+ + KTK + + + +++ + + RN+ + L+ Sbjct: 120 -DITVVKGFASGLETPKTKEITAALSRFGIAAGSKVLVVLDAPSEVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+S+ A+ +++ + Sbjct: 179 AADQLNVFDLLHANSLVVSEEALAKIQEVY 208 >gi|15644247|ref|NP_229299.1| 50S ribosomal protein L4 [Thermotoga maritima MSB8] gi|6226692|sp|P38516|RL4_THEMA RecName: Full=50S ribosomal protein L4; AltName: Full=TmaL4 gi|4982063|gb|AAD36565.1|AE001798_30 ribosomal protein L4 [Thermotoga maritima MSB8] Length = 235 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 19/225 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRARH S +R GG GP P L KK++ LALR ALS K+ Sbjct: 61 GRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDR---NFQLAARNIPNINLL 176 N ++V+D+L + KTK L + L LS +I + N +L+ RN+P++ ++ Sbjct: 121 NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVI 180 Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+D+L+ LVL++ + +E+ Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 225 >gi|239918198|ref|YP_002957756.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] gi|281415611|ref|ZP_06247353.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] gi|239839405|gb|ACS31202.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665] Length = 211 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E SV+ + + + ++F ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MAENSVKTIQ------VDLPAELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P PKK+++ ALR ALSD+ + Sbjct: 55 GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPV 178 + V++ LVS TK +L+ +++ + D L+ARN+P ++ L Sbjct: 115 GRVHVVEALVSGTTPSTKAAKAGLASLNTGRKNVLLVIDRADDVAALSARNLPAVHTLYA 174 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V +++A EA Sbjct: 175 DQLNTYDVLVSDDVVFTQAAYEA 197 >gi|332182015|gb|AEE17703.1| ribosomal protein L4/L1e [Treponema brennaborense DSM 12168] Length = 210 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 106/201 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L + ++ + + KR+G + +K RSEV + Sbjct: 1 MEKKVYSVDGKELRTITLDDKVFGLPVNEDVIYYAINNELANKRVGTACTKDRSEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K RGGG FGP P LPKKV+ LA++ LS K + Sbjct: 61 AKPYKQKGTGRARRGDKKSPLCRGGGVIFGPKPRDFSFVLPKKVKRLAMKSILSLKAQGD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++ + KTK LV + +I D N + A RNIP ++ L + Sbjct: 121 RLTVIEDFTVESGKTKDLVAILKNFPSDGRTVIVLKDDDANIKQAGRNIPAVSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 +D+ K+++ +SA++ L Sbjct: 181 RAHDLFYGRKVIMLESAVKNL 201 >gi|121603121|ref|YP_980450.1| 50S ribosomal protein L4 [Polaromonas naphthalenivorans CJ2] gi|166199840|sp|A1VIQ1|RL4_POLNA RecName: Full=50S ribosomal protein L4 gi|120592090|gb|ABM35529.1| LSU ribosomal protein L4P [Polaromonas naphthalenivorans CJ2] Length = 206 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G + VS+ +F + + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNDQGLSSSKVDVSDTVFGREYNESLIHQVIVAFQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P H + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L++ L+I Q+D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLTVDSPKTKVLADKFKAMNLNSVLVI-ADQVDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPLSLVHYKKVLVTKAAMDQLKEMF 205 >gi|318042563|ref|ZP_07974519.1| 50S ribosomal protein L4 [Synechococcus sp. CB0101] Length = 211 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + R+EVA Sbjct: 1 MANCVVRDWQGKEAGKATLELKVAKETSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSRAA- 119 Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 DI V+ KTK + +++ +++ + + RN+ + L+ Sbjct: 120 -DITVVKGFAAGLDTPKTKEITAALGRFGIADGAKVLVVLDAPSEVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+S+ A+ +++ + Sbjct: 179 AADQLNVFDLLHANHLVVSEEALAKIQEVY 208 >gi|21672769|ref|NP_660836.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009110|sp|Q8K951|RL4_BUCAP RecName: Full=50S ribosomal protein L4 gi|21623416|gb|AAM68047.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 201 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL ++++ ++SVSE IF + ++ +V+ S R G K R++V+ +G Sbjct: 1 MELVIKDVP----SLLSVSEIIFGRDFNEALIHQVVVAYSASTRQGTRAQKSRADVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 57 RKPWRQKGTGRARAGSFRSPIWRSGGVTFASKPQSHSQKINKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++ + KT LV + + + L+N LI+ +++ N LA+RN+ ++++ V + Sbjct: 117 RLIIFEKFSLDLPKTNLLVKKLKEIKLNNVLILT-KEIENNLFLASRNLYSVDVKDVCSM 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++ +A++ +E+ Sbjct: 176 DPVSLIAFEHIIITVAALKKVEEML 200 >gi|148554273|ref|YP_001261855.1| 50S ribosomal protein L4 [Sphingomonas wittichii RW1] gi|166199910|sp|A5V601|RL4_SPHWW RecName: Full=50S ribosomal protein L4 gi|148499463|gb|ABQ67717.1| LSU ribosomal protein L4P [Sphingomonas wittichii RW1] Length = 208 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 129/206 (62%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V+ LD + G I +++++FA++P+ ILARV++WQ +R ++ RS+VA TG Sbjct: 1 MKVKVQTLDAKASGDIELNDEVFAVEPRADILARVVQWQLHNRRAPARAARERSDVARTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG G ARH + F GGGKA GP + +L KKVR+L L+ ALS K Sbjct: 61 KKFGRQKGGGTARHGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+D L K+ KTK L+ + L AL+IDG +D FQLA+ NI IN+LP G Sbjct: 121 KLVVVDTLELKDAKTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAIG 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 NVYDIL+ LVL+++A+E LE RF Sbjct: 181 ANVYDILKHETLVLTRAAVEKLEARF 206 >gi|257784962|ref|YP_003180179.1| 50S ribosomal protein L4/L1e [Atopobium parvulum DSM 20469] gi|257473469|gb|ACV51588.1| ribosomal protein L4/L1e [Atopobium parvulum DSM 20469] Length = 208 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N++G+ G +S D++ ++P ++ +V+ Q R G +K R EV+ Sbjct: 1 MSKYEIKNVEGKKVGTTELSSDVYGIEPNIPVVHQVVVCQDASARQGTHSTKNRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG FGP P + K+ LA+R LS K Sbjct: 61 GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRINNKMVKLAMRSVLSGKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++D+L + TK + L + + + D N L+ RN+P +++ V Sbjct: 121 SELVLVDSLEFAQPSTKQAKAALQNLGIEGKRVTVIVPDDDVNTYLSFRNLPKVSIFGVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++ LV+S + L + Sbjct: 181 EVTTRFLIDNGALVMSADVAKQLGEVL 207 >gi|148244330|ref|YP_001219024.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA] gi|166199923|sp|A5CXK5|RL4_VESOH RecName: Full=50S ribosomal protein L4 gi|146326157|dbj|BAF61300.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA] Length = 204 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V N+ + V + IFA Q ++ +V R G K RS V+ G Sbjct: 1 MELKVLNISLNSLNTVEVDDTIFARDFNQALVHQVTTAYMSGSRQGSKAQKNRSAVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KRPWAQKGTGRARAGTTRGPIWRSGGVTFATQPRSYAQKVNKKMYKGAISIIFSELVRSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ KE KTK ++ + L++ +AL++ +LD N L++RN+ ++ + Q I Sbjct: 121 RLKVVKEFDIKEVKTKNMIALLKVLNVKDALLMTD-ELDENLYLSSRNLYHVGVCDTQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 + ++ +V+++ A++ +E Sbjct: 180 DPVSLIGYDNVVVTELALKKIE 201 >gi|227549827|ref|ZP_03979876.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM 44291] gi|227078082|gb|EEI16045.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM 44291] Length = 221 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V DG+ G + + ++F + ++ +V+ Q R G +K R V G Sbjct: 5 TLDVHTADGKTNGSVDLPAELFDREASIPLMHQVVVAQQAAARQGTHATKTRGMVRGGGK 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S + GGG GP P PKK+ AL AL+D+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHYTGGGIVHGPQPRSYAQRTPKKMIKAALAGALTDRARGSR 124 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I +++ LV + TK L ++++ + D N +L+ARN+P +++L + Sbjct: 125 IHIVEELVPGQTPSTKSARAFIERLTDRKSVLLVIGREDVNSRLSARNLPGVHILEPSQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A+ Sbjct: 185 NTYDVLNADDVVFSVEALHTF 205 >gi|148284213|ref|YP_001248303.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong] gi|189183952|ref|YP_001937737.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda] gi|166234696|sp|A5CCL1|RL4_ORITB RecName: Full=50S ribosomal protein L4 gi|226730701|sp|B3CT06|RL4_ORITI RecName: Full=50S ribosomal protein L4 gi|146739652|emb|CAM79441.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong] gi|189180723|dbj|BAG40503.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda] Length = 210 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 114/208 (54%), Gaps = 3/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL E + + ++ +F LK + I+ V+ WQ ++ G +K S V+ T Sbjct: 1 MKVKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S Q RGGG + GPV +PKK+R AL++ALS K N Sbjct: 61 KKPFKQKGTGNARQGSLRSVQMRGGGISHGPVVRSHEFDVPKKIRKQALKYALSYKLSVN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++V+D+ KT L + + SN ID +DRNF LA+RN+ N+N++ Sbjct: 121 KLIVVDDFNIGSNKTAVLKNLLKKYNYSNYSGFFCIDDQNVDRNFFLASRNLFNLNVVAQ 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G N YDI++ ++++ SA ++LE R Sbjct: 181 IGANPYDIMKHDCVMVTLSAAKSLEMRL 208 >gi|291298711|ref|YP_003509989.1| 50S ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728] gi|290567931|gb|ADD40896.1| ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E++V + G+ G +++ ++F + ++ +V+ Q KR G +K R V+ G+ Sbjct: 4 EVNVTDATGKKTGTVTLPAELFEREVNIHLMHQVVTAQLAAKRQGTHATKTRGAVSGGGA 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ AL ALSD+ S Sbjct: 64 KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALASALSDRAASEV 123 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ L KTK + RA + +++ + D + RN PN++LL + Sbjct: 124 VHVVTGLLDGDTPKTKDALKALRATTEAKKVLMVLDREDELTWKSLRNDPNVHLLFHDQL 183 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L LV SK+A + Sbjct: 184 NTYDVLVNDALVFSKAAFDDF 204 >gi|91774636|ref|YP_544392.1| 50S ribosomal protein L4P [Methylobacillus flagellatus KT] gi|122400330|sp|Q1H4N6|RL4_METFK RecName: Full=50S ribosomal protein L4 gi|91708623|gb|ABE48551.1| LSU ribosomal protein L4P [Methylobacillus flagellatus KT] Length = 208 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ + + +G ++VSE F + + ++ +V+ R R+EV++T Sbjct: 1 MEIKLIDKNGRPAKAGLAVSEATFGREFNEALVHQVVVAYQANARTATRAQLTRAEVSHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR S + +RGGG+AF P H + +K +R LS+ Sbjct: 61 TKKPWNQKGTGRARAGMSSSTIWRGGGRAFPNTPDENFSHKINRKAYRAGVRSILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + ++ KTK LV + + L + L++ + D N L+ARN+P++ +L Q Sbjct: 121 QDRLSAVEEFAVDTPKTKQLVEKIKGLGYNEGLLVLVDKFDENLYLSARNLPHVLVLEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++R +++ + A++ LE+ Sbjct: 181 YVDPVSLVRFPQVLATAGAVKKLEEML 207 >gi|30248419|ref|NP_840489.1| 50S ribosomal protein L4 [Nitrosomonas europaea ATCC 19718] gi|46577228|sp|Q82X87|RL4_NITEU RecName: Full=50S ribosomal protein L4 gi|30138305|emb|CAD84313.1| Ribosomal protein L4/L1e [Nitrosomonas europaea ATCC 19718] Length = 206 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+++ +G+ I SE +F + ++ +V++ R G KGRS+V + Sbjct: 1 MVKIPCIYENGQ-IEDIEASESVFGRVYNEALVHQVVKSYLANARAGTRAQKGRSDVTGS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR + + +RGGGK F P L +K+ + S+ Sbjct: 60 TRKQWRQKGTGRARTGAATNPLWRGGGKIFPNKPTENFKQKLNRKMYRAGMCTIFSELLR 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +N ++ ID + KTK + + + L N +II ++D N LA+RN+PN+ ++ V Sbjct: 120 NNKLVAIDEFQIEMPKTKVCLQKLKNYQLENVMIIT-SEIDSNLYLASRNLPNLKVVEVD 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ +L +V+++ + +E+ + Sbjct: 179 LIDPVSLLAYDNVVITRDTVNKIENVLQ 206 >gi|91786168|ref|YP_547120.1| 50S ribosomal protein L4 [Polaromonas sp. JS666] gi|123356254|sp|Q12GX0|RL4_POLSJ RecName: Full=50S ribosomal protein L4 gi|91695393|gb|ABE42222.1| LSU ribosomal protein L4P [Polaromonas sp. JS666] Length = 206 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + N G + V + +F + + ++ +V+ R G K R +V ++ Sbjct: 1 MQVELLNDQGLASSKVDVPDTVFGREYNESLIHQVVVAFQANARQGTRAQKDREQVRHST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F +P + KK+ + S Sbjct: 61 KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASIFSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L KTK L +F+A++L++ L+I +D N LA+RN+ NI ++ + Sbjct: 121 GRLAVVDSLAVDSPKTKVLADKFKAMNLNSVLVIADV-VDENLYLASRNLVNILVVEPRY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K++++K+A++ L++ F Sbjct: 180 ADPVSLVHYKKVLVTKAAMDQLKEMF 205 >gi|294786412|ref|ZP_06751666.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens F0305] gi|315225974|ref|ZP_07867762.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105] gi|294485245|gb|EFG32879.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens F0305] gi|315120106|gb|EFT83238.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105] Length = 219 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALK-----PQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 L V + +G+ G + ++F + ++ +V+ Q R G K R+ ++ Sbjct: 6 LKVTSANGKASGQVEAPSEVFGIAQEDVVKHVPLVHQVVIAQLAAARQGTHAVKNRARIS 65 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S QF GG GPVP P+K++ AL + LSD+F Sbjct: 66 GGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPRKMKLAALNYVLSDRF 125 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + + V+D +S + TK V + + S I + + N L+ RN+P +++L Sbjct: 126 NAGRVHVVDFAISDKPSTKAAVAALQPVVESRFATIVVSRDNINEWLSVRNLPTVHVLFA 185 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N YD++ +V +K +EA Sbjct: 186 DQLNTYDVVTAEDVVFTKEGLEAF 209 >gi|296105879|ref|YP_003617579.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99 Alcoy] gi|295647780|gb|ADG23627.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99 Alcoy] Length = 201 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + + + ++++IFA +G++ + + R G S K RSEV+ G Sbjct: 1 MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVAFMNNARSGNSAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+ + KTK + + +++SNALII ++ N L +RN+ + ++ V I Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|269128515|ref|YP_003301885.1| 50S ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183] gi|268313473|gb|ACY99847.1| ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183] Length = 204 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +IF K ++ +V+ Q R G +K R +V G K Y QKGTGRAR Sbjct: 6 VELPAEIFDAKVSVPLIHQVVVAQWAAARQGTHATKTRGDVRGGGKKPYRQKGTGRARQG 65 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE-CK 135 S QF GGG GP P PKK+++ ALR AL+D+ I V+D+L+ E K Sbjct: 66 SVRAPQFAGGGTVHGPQPRDYTQRTPKKMKAAALRGALTDRARHGRIHVVDHLIEGEVPK 125 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK + R + + +++ + D + RN P+++LL +N YD++ +V + Sbjct: 126 TKVALAALREITQAKRVLVVTARGDELTWKSLRNEPSVHLLFEDQLNTYDVMVSDDVVFT 185 Query: 196 KSAIEALEDR 205 K+A +A R Sbjct: 186 KAAYDAFIAR 195 >gi|312376204|gb|EFR23370.1| hypothetical protein AND_13049 [Anopheles darlingi] Length = 490 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 3/200 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ + + G++S+ +F P+ I+ + + WQ + + + SK R+EV G K Sbjct: 42 SLGTVQEQKLGILSLENAVFGASPRIDIVHQNIEWQRKYRFVSFAHSKTRNEVRGGGRKP 101 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKG GRARH S +RGGG A GP P + LP R L L LS K ND+ Sbjct: 102 WPQKGLGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQNDL 161 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQL-DRNFQLAARNIPNINLLPVQGI 181 V+ +L +YL + L +D + RN + A +I +INL+PV G+ Sbjct: 162 HVVQDLEIPTEDPQYLRDLVSERLWGPSVLFVDSSDILPRNISIGADSINHINLMPVYGL 221 Query: 182 NVYDILRCSKLVLSKSAIEA 201 NVY +L+ + LVL++SA+ Sbjct: 222 NVYSMLKHNTLVLTESALAH 241 >gi|87300912|ref|ZP_01083754.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701] gi|87284783|gb|EAQ76735.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701] Length = 211 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ VR+ G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MVNCVVRDWQGKEAGEASLDLKVAKKSSAADLVHRAVVRQLANARQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYTLAMNRKERRLALRTALISRAA- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 DI+V+ + KTK +V D+ S L++ D + + RN+ + L Sbjct: 120 -DILVVKGFAADLEVPKTKEIVAALDRWDVPAGSKVLLVLDAPGDV-VRRSVRNLEKVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + LVLS+ A+ +++ + Sbjct: 178 IAADQLNVFDLLHANVLVLSEEALAKIQEIY 208 >gi|332042719|gb|EGI78919.1| ribosomal protein L4/L1e [Lacinutrix algicola 5H-3-7-4] Length = 209 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V +++G++ G +S D+FA++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVAVLDINGKETGRKADLSSDVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKNLKRLARKSAFSIKANE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+V+++ KTK +ALDL +L + G + N L++RN+ ++ Sbjct: 121 KAIVVLEDFNFDSPKTKNFTNILKALDLQNKKSLFVLGA-SNNNVYLSSRNLKGSEVVTA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 ++ Y IL +++VL + A+E + Sbjct: 180 SELSTYKILNANQVVLLEGALEGI 203 >gi|313665576|ref|YP_004047447.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50] gi|312949403|gb|ADR23999.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50] Length = 208 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 2/196 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V + G + I++++ ++ ++P Q + + Q R G K K R+EV+ G Sbjct: 1 MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S Q++GGG FGP P I + KKVR+LA R LS K Sbjct: 61 RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+++++D + TK +V + L + + +I + + ++ NI + + Sbjct: 121 NNLVIVDKFDFAKPSTKEMVLVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180 Query: 180 GINVYDILRCSKLVLS 195 +NV+D+L +KL+++ Sbjct: 181 QLNVFDLLNATKLLIT 196 >gi|83814571|ref|YP_445168.1| ribosomal protein L4/L1 family protein [Salinibacter ruber DSM 13855] gi|109893635|sp|Q2S3R3|RL4_SALRD RecName: Full=50S ribosomal protein L4 gi|83755965|gb|ABC44078.1| ribosomal protein L4/L1 family [Salinibacter ruber DSM 13855] Length = 215 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + DG + G ++ +F ++P I+ ++ +R G SK+K R EV + Sbjct: 1 MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K+Y QKGTG AR RGGG+A G P H L +K + LA R ALS K + Sbjct: 61 GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++I VI+N T+ L F L + +++ +++R L+++N+P++N+ VQ Sbjct: 121 DNIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN DIL ++L + A++ L D Sbjct: 181 SINTVDILDADVVLLQEGALDWLTDVL 207 >gi|113952777|ref|YP_729666.1| 50S ribosomal protein L4 [Synechococcus sp. CC9311] gi|122945812|sp|Q0ID06|RL4_SYNS3 RecName: Full=50S ribosomal protein L4 gi|113880128|gb|ABI45086.1| ribosomal protein L4 [Synechococcus sp. CC9311] Length = 211 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + RSEV Sbjct: 1 MANCIVRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R ALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+ + KTK ++ LD+S + ++I + + RN+ + L+ Sbjct: 119 EDLVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L +KLV+ + A+ +++ + Sbjct: 179 AADQLNVFDLLHANKLVVGEDALAKIQEVY 208 >gi|256831828|ref|YP_003160555.1| 50S ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603] gi|256685359|gb|ACV08252.1| ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603] Length = 228 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 11/213 (5%) Query: 1 MIE---LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 M E + + + G G + +IF + ++ +V+ Q R G +K R++V Sbjct: 1 MAENLTVDILDATGNKTGDAVLPAEIFDVALNVPLIHQVVVAQQAAARQGTHATKTRAQV 60 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 + G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 SGGGRKPYKQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRSALSDR 120 Query: 118 FCSNDIMVIDNLVS-KECKTK-------YLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 + I VID+ + TK L +++ + D + RN Sbjct: 121 ARAGRIHVIDSFGVTEAPSTKGALSALSSLKLSKENFGDVKHVLVVHERNDEITIKSLRN 180 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 I +++L+ +N YD+L +V +K+A++ Sbjct: 181 IESVHLITADQLNTYDVLLSDDVVFTKAALDGF 213 >gi|149192607|ref|ZP_01870761.1| 50S ribosomal protein L4 [Vibrio shilonii AK1] gi|148833556|gb|EDL50639.1| 50S ribosomal protein L4 [Vibrio shilonii AK1] Length = 182 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 6/188 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ D ++VSE F + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+DN + KTK LV + + L+L++ALI+ ++D N LAARN+ ++ V GI Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDALIVT-SEVDENLFLAARNLYKVDARDVAGI 174 Query: 182 NVYDILRC 189 + ++ Sbjct: 175 DPVSLIAF 182 >gi|86158368|ref|YP_465153.1| 50S ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C] gi|109893573|sp|Q2IJ86|RL4_ANADE RecName: Full=50S ribosomal protein L4 gi|85774879|gb|ABC81716.1| LSU ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C] Length = 206 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ + KT AL AL++D + + RN+ + L V+G Sbjct: 121 QKLVIVQEWKPEGPKTAAAAKVLAALGAKKALVVDDA-ANLALARSVRNLAGSDFLAVEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LVL+ + LE Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205 >gi|289706534|ref|ZP_06502884.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58] gi|289556669|gb|EFD50010.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58] Length = 211 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E SV+ + + + ++F ++ ++ +V+ Q R G K+K R EV+ Sbjct: 1 MAENSVKTIQ------VDLPVELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S GGG GP P PKK+++ ALR ALSD+ + Sbjct: 55 GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPV 178 + VI+ LVS TK +L+ +++ + D L+ARN+P ++ L Sbjct: 115 GRVHVIEALVSGTTPSTKAAKAGLASLNTGRKNVLLVIDRADDVAALSARNLPAVHTLYA 174 Query: 179 QGINVYDILRCSKLVLSKSAIEA 201 +N YD+L +V +++A EA Sbjct: 175 DQLNTYDVLVSDDVVFTQAAYEA 197 >gi|294507052|ref|YP_003571110.1| 50S Ribosomal protein L4 [Salinibacter ruber M8] gi|294343380|emb|CBH24158.1| 50S Ribosomal protein L4 [Salinibacter ruber M8] Length = 215 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + DG + G ++ +F ++P I+ ++ +R G SK+K R EV + Sbjct: 1 MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K+Y QKGTG AR RGGG+A G P H L +K + LA R ALS K + Sbjct: 61 GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I VI+N T+ L F L + +++ +++R L+++N+P++N+ VQ Sbjct: 121 ENIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN DIL ++L + A++ L D Sbjct: 181 SINTVDILDADVVLLQEGALDWLTDVL 207 >gi|197122340|ref|YP_002134291.1| 50S ribosomal protein L4 [Anaeromyxobacter sp. K] gi|226730611|sp|B4UBA0|RL4_ANASK RecName: Full=50S ribosomal protein L4 gi|196172189|gb|ACG73162.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. K] Length = 206 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +L + G + +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ KT AL AL++D + + RN+ + L V+G Sbjct: 121 QKLVIVQEWKPGAPKTAAAAKVLAALGAKKALVVDDA-ANLALAKSVRNLDGSDFLAVEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDILR LVL+ + LE Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205 >gi|86141141|ref|ZP_01059687.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217] gi|85831700|gb|EAQ50155.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217] Length = 209 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G ++S+ +FA++P + ++ KR G KSK R+E+A + Sbjct: 1 MKVAVVDIKGKETGREANLSDSVFAIEPNDHAIYLDVKQHLANKRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTLKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPV 178 I V+++ + KTK V AL L N L + G + N L++RN+ ++ Sbjct: 121 KAITVVEDFNFETPKTKNFVDVVTALGLDNKKSLFVLGA-SNNNVYLSSRNLKTSEVITS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y I+ + +V + ++E +E Sbjct: 180 SELSTYKIMNANNVVFLEGSLEEIEQTL 207 >gi|300782609|ref|YP_003762900.1| 50S ribosomal protein L4 [Amycolatopsis mediterranei U32] gi|299792123|gb|ADJ42498.1| large subunit ribosomal protein L4 [Amycolatopsis mediterranei U32] Length = 229 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++ G+ G + + E+IF ++ ++ +V+ Q R G +K R EV Sbjct: 1 MTSVELKTPAGKADGTVDLPEEIFDVQANVALMHQVVVAQQAAARQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+ LV+ ++ TK A+ L+ +++ + D ++ RN+P +++L Sbjct: 121 GQLHVVTELVTGEKPNTKVAKAALAAVTLAKRVLVVLHRDDELSWVSLRNLPEVHILWAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L +V +K+A +A Sbjct: 181 QLNTYDVLVNDDVVFTKAAYDAF 203 >gi|331699175|ref|YP_004335414.1| 50S ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190] gi|326953864|gb|AEA27561.1| ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190] Length = 308 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V+N GE G + + +F + ++ +V+ Q R G +K R EV Sbjct: 1 MSSVDVKNAAGEKDGSVELPGHVFDVTANIPLMHQVVVAQQAAARQGTHDTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ Sbjct: 61 GRKPYRQKGTGRARQGSVRAPQFTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARG 120 Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + V+ +V+ TK A+ + L + N L+ RN+P ++L+ Sbjct: 121 GRVHVVSTIVTGDTPSTKAARQALEAVVGAEARVLAVVDRDDSVNL-LSLRNLPQVHLIA 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 +N YD+L ++ + +A+EA Sbjct: 180 PDQLNTYDVLVNDDVLFTSAALEAF 204 >gi|86132545|ref|ZP_01051138.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134] gi|85816787|gb|EAQ37972.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134] Length = 209 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G +S+ +F ++P + + ++ +R G K+K R+E+A + Sbjct: 1 MKVAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA R AL+ K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTMKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I VI++ KTK V +AL L N +I + + N L++RN+ ++ Sbjct: 121 NAITVIEDFNFDAPKTKDFVNVLKALGLENKKSLIVLGESNNNVYLSSRNLKASKVVKSS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y I+ + +V + ++E +E Sbjct: 181 ELSTYGIMNANNVVFLEGSLEGVEANL 207 >gi|53803549|ref|YP_114787.1| 50S ribosomal protein L4 [Methylococcus capsulatus str. Bath] gi|81681358|sp|Q605B3|RL4_METCA RecName: Full=50S ribosomal protein L4 gi|53757310|gb|AAU91601.1| ribosomal protein L4 [Methylococcus capsulatus str. Bath] Length = 205 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + LS+ ++ G + VS+ +F + ++ +++ R G K RS+V+ G Sbjct: 1 MSLSIPKIENGAAGDLEVSDKVFGQGFNESLVHQLVVGYLAAARSGTKAQKSRSDVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+G AR + +R GG F L KK+ A+R S+ Sbjct: 61 KKPWKQKGSGHARAGTTRSPLWRTGGVTFAASNRNYRQKLNKKMYRAAVRSIFSELLRQG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V D +V KT+ L + ++ +I QLD N L++RN+PN+++ + Sbjct: 121 RLVVSDGIVPTSPKTRELAAKLKSFGEGYT-VILAEQLDLNLALSSRNLPNVSINTADTL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + D++ +++ + SAI LE R Sbjct: 180 SPVDLVHAERVIATSSAIRKLEVRL 204 >gi|326436109|gb|EGD81679.1| hypothetical protein PTSG_02393 [Salpingoeca sp. ATCC 50818] Length = 243 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 11/194 (5%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G++ + +F ++ IL RV+ +Q R G +K+K RSEV G K + QKGTGR Sbjct: 36 RVGMMELDPTVFGEDLRKDILQRVVVFQRASWRAGTAKTKTRSEVRGGGKKPWQQKGTGR 95 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR SS FRGGG GP P LPKKV+ + +R ALS K ND++++D+L Sbjct: 96 ARASSIRSPLFRGGGTVHGPTPKDWSIKLPKKVQRMGVRVALSAKLAQNDLLIVDSLNLP 155 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + L+ SN+L N AA + ++ ++P + INVYD+L L Sbjct: 156 SSNEEDLLEAL----FSNSL-------PPNLSAAAEGLDDVTVMPQRDINVYDMLNHPTL 204 Query: 193 VLSKSAIEALEDRF 206 ++S A+ +E Sbjct: 205 IMSMDAVREVEQWL 218 >gi|148238769|ref|YP_001224156.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803] gi|166199919|sp|A5GIU4|RL4_SYNPW RecName: Full=50S ribosomal protein L4 gi|147847308|emb|CAK22859.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803] Length = 211 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + RSEV Sbjct: 1 MANCVVRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ V+ + + KT+ +V L + + ++I + + RN+ + L+ Sbjct: 119 DDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSEVLRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 AANQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|172039996|ref|YP_001799710.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109] gi|226730646|sp|B1VET7|RL4_CORU7 RecName: Full=50S ribosomal protein L4 gi|171851300|emb|CAQ04276.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109] Length = 225 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG+ G + + IF ++ ++ +V+ Q KR G +KGR EV G Sbjct: 5 KLDVHTADGKTNGSVELPASIFDVEASVALMHQVVTAQLAAKRQGTHATKGRGEVRGGGR 64 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S F GGG GP P PKK+++ ALR ALSD+ + Sbjct: 65 KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARHSR 124 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI+ LV + TK + L +++ + D + + N+PN++ LP + Sbjct: 125 IHVIEELVPGQIPSTKSARSFLERLTERKQILVVLTREDLTARKSVANLPNVHALPADQL 184 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L +V S A++A Sbjct: 185 NTYDVLHADDVVFSVEALDAF 205 >gi|148361052|ref|YP_001252259.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby] gi|166234680|sp|A5IHR3|RL4_LEGPC RecName: Full=50S ribosomal protein L4 gi|148282825|gb|ABQ56913.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby] Length = 201 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + + + ++++IFA +G++ + + R G S K RSEV+ G Sbjct: 1 MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+ + KTK + + +++SNALII ++ N L +RN+ + ++ V I Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|307609139|emb|CBW98586.1| 50S ribosomal subunit protein L4 [Legionella pneumophila 130b] Length = 201 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + + + ++++IFA +G++ + + R G S K RSEV+ G Sbjct: 1 MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+ + KTK + + +++SNALII ++ N L +RN+ + ++ V I Sbjct: 117 NLVVVSDFQCDNHKTKDFLNKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|189501210|ref|YP_001960680.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides BS1] gi|226730638|sp|B3EP60|RL4_CHLPB RecName: Full=50S ribosomal protein L4 gi|189496651|gb|ACE05199.1| ribosomal protein L4/L1e [Chlorobium phaeobacteroides BS1] Length = 208 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V N G + G + ++++ +F+ + + + ++ +R G K+K RSEV Sbjct: 1 MELKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P + KKV+ LA R AL++K Sbjct: 61 GRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ V + KT+ + + L L S ++ + + + RNIP + ++ Sbjct: 121 GGIVVVEDFVFDQIKTRQMAEVLKNLGLDSRKTLMLMPEHNDIIVRSGRNIPKLQVVVAD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDIL +++ K+A++ +E+ Sbjct: 181 NASTYDILDSQTVLVQKTALKKIEETL 207 >gi|254495712|ref|ZP_05108628.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12] gi|254355059|gb|EET13678.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12] Length = 201 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 109/204 (53%), Gaps = 3/204 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + +D + +++++D+FA +G++ + + R G S K RSEV G K Sbjct: 1 MEITTIDNKT--TLTLNQDVFAYAYNEGLIHQAVVTFMNNARSGNSAQKTRSEVRGGGRK 58 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR + +R GG F + KK+ ALR +S+ + ++ Sbjct: 59 PWNQKGTGRARAGTIRSPIWRSGGVTFASKKRDYSQKINKKMYKRALRSIISELCRTGNL 118 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +VI + + KTK V++ L+++NALI+ ++ N +RN+ + ++ V ++ Sbjct: 119 IVISDFQCESKKTKDFVSKMSQLEINNALIV-MSEVGENEYFGSRNLIDFDICDVATLDP 177 Query: 184 YDILRCSKLVLSKSAIEALEDRFK 207 +LR K+V++++AI+ +E++ + Sbjct: 178 VSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|54293322|ref|YP_125737.1| 50S ribosomal protein L4 [Legionella pneumophila str. Lens] gi|81601549|sp|Q5WZL1|RL4_LEGPL RecName: Full=50S ribosomal protein L4 gi|53753154|emb|CAH14601.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str. Lens] Length = 201 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + + + ++++IFA +G++ + + R G S K RSEV+ G Sbjct: 1 MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+ + KTK + + +++S+ALII ++ N L +RN+ + ++ V I Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQMEISSALII-MSEVGENEYLGSRNLIDYDICDVTTI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|114330575|ref|YP_746797.1| 50S ribosomal protein L4 [Nitrosomonas eutropha C91] gi|122314431|sp|Q0AIJ4|RL4_NITEC RecName: Full=50S ribosomal protein L4 gi|114307589|gb|ABI58832.1| LSU ribosomal protein L4P [Nitrosomonas eutropha C91] Length = 206 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 3/208 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+++ R+ +G+ I VS+ +F + ++ +++ R G KGRSEVA + Sbjct: 1 MVKIPCRSENGQVV-NIEVSDSVFDRVYNEALVHQIVTSYLANARSGTRAQKGRSEVAGS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR + S +RGGGK F P + +K+ + S Sbjct: 60 TRKQWRQKGTGRARVGAASNPLWRGGGKIFPNKPTENFTKKVNRKMYRAGMCTIFSQLLR 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ ++ I + KTK+ + + + L N +II ++D N LA+RN+PNI ++ + Sbjct: 120 NSKLVAISEFRVETTKTKFFLQKLKNYQLENVMIITD-EVDENLYLASRNVPNIKVVEID 178 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 I+ +L +V+++ A+ +E + Sbjct: 179 LIDPVSLLSYDNVVITREAVNKIESVLQ 206 >gi|221194347|ref|ZP_03567404.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626] gi|221185251|gb|EEE17641.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626] Length = 208 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + ++N +G+ G +S D++ ++P ++ +V+ Q+ R G +K R EV+ Sbjct: 1 MSKYEIKNTEGKKVGDADLSADVYGIEPNIPVVHQVVTCQAASLRQGTHSTKNRHEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+ GGG FGP P + K+ LA+R LS K Sbjct: 61 GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRVNSKMVKLAMRSVLSGKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++++++DNL TK V +AL L N + + D N L+ RN+ +++ V Sbjct: 121 SELVLVDNLEFDTPSTKQAVAVLKALGLENKRVTLLVPDDDINTYLSFRNLKKVSIFGVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ + LV+S + L + Sbjct: 181 EATTRSLIDNAALVMSADIAKQLGEVL 207 >gi|82701901|ref|YP_411467.1| 50S ribosomal protein L4 [Nitrosospira multiformis ATCC 25196] gi|109893611|sp|Q2YAZ6|RL4_NITMU RecName: Full=50S ribosomal protein L4 gi|82409966|gb|ABB74075.1| LSU ribosomal protein L4P [Nitrosospira multiformis ATCC 25196] Length = 206 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + +G+ +S SE +F + + ++ +V+ R K RS+VA + Sbjct: 1 MELKLIDYNGQSSASVSASETLFGREYNEALVHQVVTAYLANARSANRAQKARSDVAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F P H + +K+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPLWRGGGKIFPNSPEENFSHKVNRKMYRAGIGAILSQLVRE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + V++N + KTK L + + + L +II +D N L++RN+P + ++ Sbjct: 121 NRLSVVENFIVDAPKTKILAQKLKDMGLDQVMIITD-NIDENLYLSSRNLPLVKVVEAGY 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 + ++R + ++++++A+ +E+ Sbjct: 180 ADPVSLMRFANVLITRNALAKMEEAL 205 >gi|54296366|ref|YP_122735.1| 50S ribosomal protein L4 [Legionella pneumophila str. Paris] gi|81602027|sp|Q5X858|RL4_LEGPA RecName: Full=50S ribosomal protein L4 gi|53750151|emb|CAH11543.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str. Paris] Length = 201 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + + + ++++IFA +G++ + + R G S K RSEV+ G Sbjct: 1 MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++MV+ + KTK + + +++SNALII ++ N L +RN+ + ++ V I Sbjct: 117 NLMVVSDFQCDNHKTKDFLKKMNQMEISNALII-MSEVGENEYLGSRNLIDYDICDVTTI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|118602214|ref|YP_903429.1| 50S ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166199859|sp|A1AVK1|RL4_RUTMC RecName: Full=50S ribosomal protein L4 gi|118567153|gb|ABL01958.1| LSU ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 204 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V N+ I V++ +FA Q ++ +V R G K RS V+ Sbjct: 1 MKFKVLNISTNKSSTIEVADTVFARGFNQALVHQVTTAYMSGGRQGSKAQKNRSTVSGGS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 + + QKGTGRAR + +R GG F P + KK+ A+ S+ S Sbjct: 61 KRPWAQKGTGRARAGTTRGPIWRSGGVTFSAAPRGYAQKVNKKMYKGAISVIFSELARSE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ KE KTK + +AL++ + L++ +LD N L++RN+ ++ + +Q I Sbjct: 121 RLKVVSEFNIKEIKTKNITALLKALNVKDVLLMTD-ELDENLYLSSRNLYHVGVCDIQSI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V+++ A++ +E Sbjct: 180 DPVSLIGYDNVVVTEIALKKIEAML 204 >gi|42526280|ref|NP_971378.1| 50S ribosomal protein L4 [Treponema denticola ATCC 35405] gi|46577160|sp|P61070|RL4_TREDE RecName: Full=50S ribosomal protein L4 gi|41816392|gb|AAS11259.1| ribosomal protein L4 [Treponema denticola ATCC 35405] gi|325473224|gb|EGC76419.1| 50S ribosomal protein L4 [Treponema denticola F0402] Length = 211 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 108/205 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L ++ + + KR+G + +KGR+EV + Sbjct: 1 MEKKVYSVDGKELRTINLDDKVFGLPVNDDVIYYAINNELANKRVGTACTKGRAEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK Y QKGTGRAR K GGG FGP P +++PKK + LA++ LS K ++ Sbjct: 61 SKPYSQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFSYSMPKKAKRLAMKSILSLKAQND 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+++ + KT+ LV +I D + A RNIP+++ L + Sbjct: 121 RLVVVEDFTVESGKTRDLVKILDNFAKGERAVIILKDDDSLVKRAGRNIPHLSFLAYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ +SA + L + + Sbjct: 181 RAHDLFYGRKVIMLESAAKNLSEFY 205 >gi|328949276|ref|YP_004366613.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489] gi|328449600|gb|AEB15316.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489] Length = 212 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + IF L + ++ + + KR+G + +K R+EV + Sbjct: 1 MEKKVYSIDGKELRTINLDDKIFGLPVNEDVIYYAITNELANKRVGTACTKTRAEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTG AR K GGG FGP P +A+PKK + LA++ LS + ++ Sbjct: 61 AKPYKQKGTGNARRGDKKSPITVGGGTIFGPKPRDYSYAIPKKEKRLAMKSILSLQAQAD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+++ + KTK LV + +I D + A RN+PN+ L + Sbjct: 121 RLTVVEDFTIESGKTKDLVKILKNFVKDERTVILLKDDDAKIKQAGRNLPNVYFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ + A + L D + Sbjct: 181 RAHDLFYGRKIIMLEGAAKNLSDFY 205 >gi|328951235|ref|YP_004368570.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884] gi|328451559|gb|AEB12460.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884] Length = 207 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 5/205 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V + G+ + +++ E+I +L V+RWQ ++R G + +K R EVAY+ Sbjct: 1 MYTLPVISKSGKKEVQVNLPEEI-----NPHVLYEVVRWQLAKRRRGTASTKTRGEVAYS 55 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QK TGRARH + F GGG FGP P + LPKKVR L L A++D+ Sbjct: 56 SRKLYPQKHTGRARHGDRGAPIFVGGGTVFGPKPRDYSYTLPKKVRKLGLAMAIADRAKE 115 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V++ KTK + +A L + + + + AARN+P ++L +G Sbjct: 116 EKLLVVEAFEGVNGKTKEFLAWAKANGLDGSETVLVVTENELVRRAARNLPWASVLEPEG 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +NVYDILR +L+L ++A++ +R Sbjct: 176 LNVYDILRHERLLLDEAALKLALER 200 >gi|189501653|ref|YP_001957370.1| 50S ribosomal protein L4 [Candidatus Amoebophilus asiaticus 5a2] gi|226730610|sp|B3EUM2|RL4_AMOA5 RecName: Full=50S ribosomal protein L4 gi|189497094|gb|ACE05641.1| hypothetical protein Aasi_0196 [Candidatus Amoebophilus asiaticus 5a2] Length = 210 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV G+D G + +S+ IF + P + ++ KR G KSK R E+A + Sbjct: 1 MELSVLQYTGKDTGRKVVLSDTIFGITPNDHAIYLDVKNILANKRQGTHKSKERGEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L KK++ LA + AL+ K Sbjct: 61 TKKIKKQKGTGTARAGSIKSPIFRGGGRVFGPKPRDYGFKLNKKLKKLARKSALTYKAQQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I V+++ + KTK + + L++++ ++ +D+N LA+RN+PN ++ V+ Sbjct: 121 GNISVLEDFSFEMPKTKMYLEMLQNLNMADQKTLLILPAVDKNLVLASRNLPNTSVALVE 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN YD+L K+++S++A+ L + F Sbjct: 181 QINTYDLLYSKKILISETALSKLTENF 207 >gi|308235495|ref|ZP_07666232.1| 50S ribosomal protein L4 [Gardnerella vaginalis ATCC 14018] gi|311115166|ref|YP_003986387.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC 14019] gi|310946660|gb|ADP39364.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC 14019] Length = 221 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGIL------ARVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +L +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ALS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYALS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKAAVAALTPVTKDQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVITAQYVVFSKEGFEAF 209 >gi|308809341|ref|XP_003081980.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri] gi|116060447|emb|CAL55783.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri] Length = 275 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 106/216 (49%), Gaps = 24/216 (11%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G ++ IF + + RV+RWQ + R G K+K R EV+ T K QKG GRAR Sbjct: 54 GEATLPGRIFDQPLRVDVAHRVVRWQRAKARAGTHKTKTRGEVSGTTRKARPQKGQGRAR 113 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 Q RGGG A GPVP +ALPKKVR + L+ ALS + I+++D+ E Sbjct: 114 VGMLRAPQMRGGGVAHGPVPRSHAYALPKKVRRMGLKVALSARAAEGKIVIVDSFAGMEP 173 Query: 135 KTKYLVTRFRAL----------DLSNALIIDGCQL--------------DRNFQLAARNI 170 KT+ + L + LI+DG + ++++RN+ Sbjct: 174 KTRVMKETLERLTGDMGLAAGGKFHSTLIVDGEFEETSEEDDDEETYSPNEIVRISSRNL 233 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P++ +LP G NVY ILR LV++KS +E L R Sbjct: 234 PHVEVLPQIGANVYSILRRRTLVMTKSGLEQLIRRL 269 >gi|15605617|ref|NP_212990.1| 50S ribosomal protein L4 [Aquifex aeolicus VF5] gi|6647723|sp|O66432|RL4_AQUAE RecName: Full=50S ribosomal protein L4 gi|2982768|gb|AAC06394.1| ribosomal protein L04 [Aquifex aeolicus VF5] Length = 199 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 72/192 (37%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 G + V +D+F +K ++ +L V++WQ ++R G +K R EVAY+G K+ QKGTG Sbjct: 2 KIGDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGN 61 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131 ARH + V+ F GGG A GP P + LPK+VR L L+ ALSDK +N I+ +DN+ Sbjct: 62 ARHGERGVNIFVGGGVAHGPKPRDYEYPLPKRVRKLGLKMALSDKARNNAIIFVDNIDLG 121 Query: 132 KECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 K+ KTK + + L + +++ + + RN+PN+ +L +G+NVYD+L + Sbjct: 122 KKPKTKKAIEFLKNLGVEKEKVLVVIPEKADVLYKSFRNLPNVRVLLPEGLNVYDVLWAN 181 Query: 191 KLVLSKSAIEAL 202 KLV+ K ++ + Sbjct: 182 KLVIQKDCLDRI 193 >gi|313158262|gb|EFR57664.1| 50S ribosomal protein L4 [Alistipes sp. HGB5] Length = 208 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + +S+ +F ++ + ++ +R G KSK R+EVA + Sbjct: 1 MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGP P L KK++ LA R AL+ K + Sbjct: 61 TRKLKRQKGTGGARCGSIKSPLFPGGGRIFGPQPRDYSFKLNKKLKQLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ L KTK +V AL + +++ + + N QL+ RN+P + + Q Sbjct: 121 GAISVVETLSLDAPKTKAVVALADALKVADKKVLLVLPESNANLQLSCRNLPYVQPVLAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YD++ S +V+ + A L Sbjct: 181 NVCTYDVMNASAIVMVEGAENVLNTML 207 >gi|167752386|ref|ZP_02424513.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216] gi|167660627|gb|EDS04757.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216] Length = 208 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 2/199 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL+V N G++ G + +S+ +F ++ + ++ +R G KSK R+EVA + Sbjct: 1 MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F GGG+ FGPVP L KK++ LA R AL+ K + Sbjct: 61 TRKLKRQKGTGGARCGSIKSPLFVGGGRVFGPVPRDYSFKLNKKLKQLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V++ + KTK +V AL + +++ + N QL+ RN+P + + Sbjct: 121 GAICVVEPISMDAPKTKSIVAMAEALKVADKKVLLVLPDSNVNLQLSCRNLPYVKAILAS 180 Query: 180 GINVYDILRCSKLVLSKSA 198 +N Y+++ S LV+ + A Sbjct: 181 NVNTYEVMNASALVMVEGA 199 >gi|94968255|ref|YP_590303.1| 50S ribosomal protein L4 [Candidatus Koribacter versatilis Ellin345] gi|166234624|sp|Q1ISC1|RL4_ACIBL RecName: Full=50S ribosomal protein L4 gi|94550305|gb|ABF40229.1| LSU ribosomal protein L4P [Candidatus Koribacter versatilis Ellin345] Length = 217 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V NL GE G +++++F + +L ++ + G +K + V+ Sbjct: 1 MATIDVVNLSGEKVGSFELADEVFGA-VNEDLLWEAVKHYRAGQHRGTHATKNKKLVSGA 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR S +R GG GP P +A P+K ALR AL+ K Sbjct: 60 GKKLWKQKGTGRARVGSIRSPLWRHGGTVHGPQPRSYDYAFPRKKLLGALRSALAAKLAD 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+++ KE K L + ++ ++N +L++RN+ + L+ Sbjct: 120 GKLTVVESFDVKEPKANAFRKTLAGLKVDKTALLIESAENKNLELSSRNLKGVELVAGNA 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y +LR + V+++ A+E L++ K Sbjct: 180 VHPYHLLRYDRAVIARPALEKLQNSLK 206 >gi|12084410|pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 Length = 225 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 19/224 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ G Sbjct: 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRARH S +R GG GP P L KK++ LALR ALS K+ N Sbjct: 61 RKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYREN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDR---NFQLAARNIPNINLLP 177 ++V+D+L + KTK L + L LS +I + N +L+ RN+P++ ++ Sbjct: 121 KLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVII 180 Query: 178 V---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+D+L+ LVL++ + +E+ Sbjct: 181 ADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 224 >gi|18311386|ref|NP_563320.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13] gi|18146070|dbj|BAB82110.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13] Length = 175 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 3/174 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + N +G+ G I ++E +F ++ + L +V+ Q KR G +K RSEV Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+ GG F P P ++PK +R +A+ AL+ K Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 D++V+++L + KTK V A + LII +++ N +ARNI N Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT-AEVNENVYKSARNIRRCN 171 >gi|254468893|ref|ZP_05082299.1| ribosomal protein L4/L1 family [beta proteobacterium KB13] gi|207087703|gb|EDZ64986.1| ribosomal protein L4/L1 family [beta proteobacterium KB13] Length = 208 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 101/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + + G+ + S+ IFA ++ ++ +++ R+ K R+EV ++ Sbjct: 1 MDIKLVDNKGKASTKKVKASDAIFAADFKESLVHQLVVSYMANARVATRAQKTRAEVKHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR S +R GG+AF P + KK ++ S+ Sbjct: 61 TRKPFRQKGTGNARAGMTSSPIWRSGGRAFPNRPDENYSKKVNKKAYRTGMKSIFSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V++ + KTK + ++ N +++ + D N L++RNIP ++ + Sbjct: 121 QDRLTVVEEFKVDKPKTKSFNELIKNFNIENNVLVITNEFDENLYLSSRNIPTALVVEAR 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ SK+++++ A++ +E+ F Sbjct: 181 YIDPVSLVHFSKVIVTEQALKTIEEMF 207 >gi|33866600|ref|NP_898159.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102] gi|46577186|sp|Q7U4J9|RL4_SYNPX RecName: Full=50S ribosomal protein L4 gi|33633378|emb|CAE08583.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102] Length = 211 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + +R+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MADCVIRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D+ V+ + + KTK + L + ++I + + + RN+ + L+ Sbjct: 119 EDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 AANQLNVFDLLHANALVLGEDALATIQEVY 208 >gi|327402782|ref|YP_004343620.1| 50S ribosomal protein L4P [Fluviicola taffensis DSM 16823] gi|327318290|gb|AEA42782.1| LSU ribosomal protein L4P [Fluviicola taffensis DSM 16823] Length = 208 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V + G+ +++S+ IF ++P + ++ +R G KSK R+E+A + Sbjct: 1 MEVKVIDSKGKATSKKVTLSDTIFGIEPNDHAIYLDVKQHLANRRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S GGG+ FGP P L K++ LA + A + K Sbjct: 61 TRKIKKQKGTGGARAGSVKSGTRVGGGRIFGPRPRNYHFKLNIKLKRLARKSAFAYKAKL 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + I+V++++ KT +L+L L+I G D N L++RN+ + ++ Sbjct: 121 DSILVLEDVALATPKTAEFKAMLSSLNLLNEKVLMIVGSGSD-NVYLSSRNLQRVKVVSA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L K+VL++S+IE +E Sbjct: 180 DSVNTYDVLNAKKVVLTESSIEVIEKIL 207 >gi|297537532|ref|YP_003673301.1| 50S ribosomal protein L4/L1e [Methylotenera sp. 301] gi|297256879|gb|ADI28724.1| ribosomal protein L4/L1e [Methylotenera sp. 301] Length = 208 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL +++ +G+ ++VS+D F + + ++ +V+ R KGR VA+T Sbjct: 1 MELKLQDKNGKAVKAGVTVSDDTFGREFNEALVHQVVVAYMANARTATRAQKGRGNVAHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 K Y QKGTG AR S +RGGG+AF P H + +K ++ LS+ Sbjct: 61 THKPYAQKGTGNARAGMTSSPIWRGGGRAFPSSPLENFSHKINRKAYRAGMQTILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V++ V KTK + + L +++ D N L++RN+ N+ ++ Q Sbjct: 121 QERLNVVEEFVVATPKTKAFAEKIKNLGFEGGVLVLTDGFDENLYLSSRNLINVMVVEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +V + +A++ LE+ Sbjct: 181 FADPVSLVRFPNVVATVAAVKKLEEML 207 >gi|145588243|ref|YP_001154840.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189029513|sp|A4SUW2|RL4_POLSQ RecName: Full=50S ribosomal protein L4 gi|145046649|gb|ABP33276.1| LSU ribosomal protein L4P [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 206 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G + S ++F + + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLQDNGTLGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D KTK L + +A+ L + LII Q+ N LA+RN+ + + Q Sbjct: 121 GRLNVVDQFSLDAPKTKVLADKVKAMGLDSVLIIVD-QVSENLYLASRNLHKVAVCEPQH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + +++ K+++SK+AI +E+ K Sbjct: 180 ADPLALVQYKKVLVSKAAIAKIEELLK 206 >gi|226198215|ref|ZP_03793786.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9] gi|225929735|gb|EEH25751.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9] Length = 192 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 2/192 (1%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +++ S+ +F + ++ +V+ R G K R +V +T K + QKGTGRAR Sbjct: 1 MVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTTKKPWRQKGTGRARA 60 Query: 76 SSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S +RGGG+ F P H + KK+ L S + V++++V + Sbjct: 61 GMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLAREGRLSVVEDIVLEAP 120 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L +F+A+ L + L+I +D N LA+RN+P++ ++ + + ++ K+++ Sbjct: 121 KTKLLADKFKAMGLDSVLVITDT-VDENLYLASRNLPHVAVVEPRYADPLSLIYFKKVLV 179 Query: 195 SKSAIEALEDRF 206 +K+A+ +E+ Sbjct: 180 TKAAVAQIEELL 191 >gi|58617355|ref|YP_196554.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel] gi|75432695|sp|Q5FFU1|RL4_EHRRG RecName: Full=50S ribosomal protein L4 gi|58416967|emb|CAI28080.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel] Length = 205 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 119/205 (58%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N++ ++ G I ++ IF++ + IL V+ WQ ++R+G K+K +V+ T Sbjct: 1 MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LII G ++ + +N+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFEHQSFLII-GKDYNKGMMYSCKNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DILR ++L+ ++ LEDR Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204 >gi|256380597|ref|YP_003104257.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827] gi|255924900|gb|ACU40411.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827] Length = 231 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 1/200 (0%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + VR DG+ G + + +F + +L +V+ Q R G K K R+EV+ G K Sbjct: 5 VEVRTPDGKTDGSVELPGAVFDAQANISLLHQVVVAQQAAARQGTHKVKTRAEVSGGGKK 64 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S QF GGG GPVP PKK+++ ALR ALSD+ +N + Sbjct: 65 PYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARANQV 124 Query: 124 MVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 V+ V + TK ++ + +++ + + ++ RN+ +++++ +N Sbjct: 125 HVVTGFVEGDKPSTKTARKVLESVSTARRILVVLLRDEDVSWVSLRNLTHVHVIAPDQLN 184 Query: 183 VYDILRCSKLVLSKSAIEAL 202 YD+L +V SKSA++ Sbjct: 185 TYDVLVNDDVVFSKSALDVF 204 >gi|305665136|ref|YP_003861423.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170] gi|88709888|gb|EAR02120.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170] Length = 209 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V ++ G++ G + +S+++FA++P + ++ +R G K+K R E+ + Sbjct: 1 MKVAVLDIKGKETGRKVDLSDNVFAIEPNNHAIYLDVKQYLAHQRQGTHKAKERGEIVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYSQKLNKNVKRLARKSALSIKTKE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 +MV+++ + KTK V ++L L N + + L++RN+ ++ Sbjct: 121 KAVMVVEDFDLETPKTKDFVQILKSLGLENKKSLFVLGDSNNGVYLSSRNLERSEVVINS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL + +VL + ++E +E Sbjct: 181 ELSTYKILNANNIVLLEGSLEGIE 204 >gi|261880881|ref|ZP_06007308.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361] gi|270332388|gb|EFA43174.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361] Length = 209 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+SV N++G++ G ++++ IF ++P ++ ++ +R G +K+K RSE A + Sbjct: 1 MEVSVLNINGQETGRKATLNDAIFGIEPNDHVIYLDVKHYLAAQRQGTAKTKERSERAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + GGG+ FGP P L KKV++LA + ALS K Sbjct: 61 TRKLIRQKGSGGARRGDINSPVLVGGGRVFGPQPHDYSFKLNKKVKALARKSALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I++++++ + KTK V + L + ++ ++++N L+ARNI ++ Sbjct: 121 NAIIIVEDIDIEAPKTKDFVNITKNLKVDGKKTLVVLPEVNKNVYLSARNIQKAEVMTAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN Y +L LV+++ +++ ++D Sbjct: 181 AINTYKVLNADVLVITEGSLKTIDDIL 207 >gi|270157909|ref|ZP_06186566.1| ribosomal protein L4 [Legionella longbeachae D-4968] gi|289163831|ref|YP_003453969.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150] gi|269989934|gb|EEZ96188.1| ribosomal protein L4 [Legionella longbeachae D-4968] gi|288857004|emb|CBJ10818.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150] Length = 201 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 5/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++ + +++++D+FA +G++ + + R G S K R+EV G Sbjct: 1 MEITTIDTK----STLALNQDVFAYGYNEGLIHQAVVAYMNNARSGNSAQKTRAEVRGGG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F L KK+ ALR +S+ + Sbjct: 57 KKPWNQKGTGRARAGTIRSPIWRTGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +++V+ + + KTK + + L+++NALII ++ N +RN+ + ++ V + Sbjct: 117 NLLVVSDFQCESKKTKDFINKMNQLNVTNALIIMT-EVGENEYFGSRNLIDYDICDVTTV 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 + +LR K+V++++AI+ +E++ + Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201 >gi|88807885|ref|ZP_01123396.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805] gi|88787924|gb|EAR19080.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805] Length = 211 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G S+ + ++ R + Q R G + + RSEV Sbjct: 1 MANCVVRDWQGKEAGKASLDLKVAKETTALDLMHRAVLRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ V+ + + KT+ + L + + ++I + + RN+ + L+ Sbjct: 119 DDVTVVKDFGASLEAPKTREITDALGRLGIEADSKVLIVVGNPSEVLRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 AANQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|254433247|ref|ZP_05046755.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27] gi|207089580|gb|EDZ66851.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27] Length = 191 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 1/189 (0%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 +S+ +F + ++ +V+ + R G K RSE G+K + QKGTGRAR + Sbjct: 3 QLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGGGAKPFRQKGTGRARAGT 62 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 +RGGG+AF P + +K+ A+R LS+ + + +ID ++ + KT+ Sbjct: 63 IRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQDRLRMIDKIMLSKPKTR 122 Query: 138 YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 L + + + LI+ + DRN +L+ARNIP + + V ++ +++R ++++ Sbjct: 123 DLAKLLKPITWRSVLIVV-AEDDRNLELSARNIPTVAIRNVSRVSPVELIRFDGVLVTGD 181 Query: 198 AIEALEDRF 206 AI E+ Sbjct: 182 AIRCFEESL 190 >gi|242014210|ref|XP_002427784.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus corporis] gi|212512253|gb|EEB15046.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus corporis] Length = 286 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ V N+D + +G++ ++ IF P+ ++ ++WQS R+ +K R+E+ Sbjct: 65 EVWVENVDSIKEQKRGLVQLNPSIFGTIPRLDLIYYNIKWQSLYSRVILYSAKTRAEMKG 124 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 +G K + QKGTGRAR S+ Q +GGG GP P +P + L LS K Sbjct: 125 SGRKPHPQKGTGRARLGSRRAPQVKGGGTCHGPRNPTSYYFRIPLYKKIHGLTSTLSAKL 184 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLL 176 ND+ V+DN+ ++Y++ + + ++++I + RN +A +I I L+ Sbjct: 185 AQNDLHVVDNINIPTDDSQYMIDLMKERNWGSSVLIVDSDDIMPRNISIATDSIGYITLM 244 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ LVL+ SA++ LE++ Sbjct: 245 PVYGLNVYGMLKHDTLVLTLSALDELENKL 274 >gi|57239335|ref|YP_180471.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|58579301|ref|YP_197513.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|81557285|sp|Q5HAS3|RL4_EHRRW RecName: Full=50S ribosomal protein L4 gi|57161414|emb|CAH58338.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] gi|58417927|emb|CAI27131.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E++V N++ ++ G I ++ IF++ + IL V+ WQ ++RIG K+K +V+ T Sbjct: 1 MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK TGRAR S QFRGG FGPV ++L KKVR+L L+ ALS K N Sbjct: 61 AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D++ KT ++ + + + LII G ++ + +N+ N+ LL G Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFEHQSFLII-GKDYNKGMMYSCKNLHNVTLLKQIGT 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+DILR ++L+ ++ LEDR Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204 >gi|330752349|emb|CBL87302.1| ribosomal protein L4 [uncultured Sphingobacteria bacterium] Length = 208 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L + N G + G +++ ++IF ++P + ++ KR G S + +V + Sbjct: 1 MKLKIVNTSGAETGKEVTLPKEIFGVEPNDHAIYLDVKQHLANKRSGTHSSTEKGDVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ GP P L KK++ +A ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFRGGGRMHGPRPRDYRFKLNKKLKLVARASALSYKAKD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +IMVID + KTK ++ +L + ++ ++N L++RNIPN ++ Sbjct: 121 KEIMVIDQISMDSVKTKGYLSVLTSLKMNDKKTLLLVPDYNKNVYLSSRNIPNAQVMKAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y+IL + ++L + AI+ L++ F Sbjct: 181 DVNTYNILNANNIILEEGAIDKLKELF 207 >gi|195952644|ref|YP_002120934.1| 50S ribosomal protein L4 [Hydrogenobaculum sp. Y04AAS1] gi|226730675|sp|B4U745|RL4_HYDS0 RecName: Full=50S ribosomal protein L4 gi|195932256|gb|ACG56956.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. Y04AAS1] Length = 200 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 3/192 (1%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +D+F ++P++ IL V+RWQ ++R G +K R+EV + K+ QKGTG ARH Sbjct: 6 VELRDDVFNVEPKKHILWDVVRWQLAKRRQGTHSTKTRAEVNCSKKKIMPQKGTGNARHG 65 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VSKEC 134 ++S + F GGG GP P + L KK R +AL ALS K +N + V+++L + Sbjct: 66 ARSANIFVGGGVVHGPTPRDYEYKLSKKYRKIALAMALSTKAKNNSVYVLESLLSSLGKP 125 Query: 135 KTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KTK + +S +++ + + +NIPN +LPV G+NVYDIL L+ Sbjct: 126 KTKVAFELLKEKGISDKKVLVVTKDQNDIVSKSFKNIPNTKVLPVVGLNVYDILWADALL 185 Query: 194 LSKSAIEALEDR 205 + + A+E + +R Sbjct: 186 IEQGALEKIYER 197 >gi|114778823|ref|ZP_01453630.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1] gi|114550954|gb|EAU53518.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1] Length = 207 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 2/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E+++ N ++ G ++ +F L + RV + +R G SK K RSEV+ Sbjct: 1 MAEITIVNQSNKEVGKRELNPAVFGLDADAAFVHRVYAALASAQRGGTSKVKDRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTGRAR S +Q+R GG A GP + KK R AL ALSD Sbjct: 61 GKKPWKQKGTGRARAGSSRQAQWRHGGTAHGPSADTSFATRINKKERRRALCLALSDCLR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+D L E KTK V AL + LI+ G + + +L+ RN+PN ++ Sbjct: 121 EGKLTVVDKLELAEIKTKAFVDTLGALGADSGLIVLG-ESNNAVELSGRNVPNTRIVLDG 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L+ ++VL+ +AI+ LE+R Sbjct: 180 QVNLHDLLKSKRVVLTSAAIDNLEERL 206 >gi|320538164|ref|ZP_08038059.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421] gi|320144981|gb|EFW36702.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421] Length = 211 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I++ + +F L + ++ + + R+G + +KGR+EV + Sbjct: 1 MEKKVYSVDGKELRTINLDDAVFGLPVNEDVIYYAVNNELANNRVGTACTKGRAEVNGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P + +PKK + LA++ LS K + Sbjct: 61 AKPYRQKGTGRARRGDKKSPILVGGGTIFGPKPRDYSYVMPKKAKRLAMKSLLSMKAQDD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+++ + KTK L ++ D + A +NIP ++ L + Sbjct: 121 RLTVVEDFTIESGKTKDLAKILSNFAERGRTVLILHDDDPMLKRAGKNIPRLSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ +SA++ L D + Sbjct: 181 RAHDLFYGRKVLILESAVKKLSDFY 205 >gi|153004774|ref|YP_001379099.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5] gi|166234631|sp|A7HBL9|RL4_ANADF RecName: Full=50S ribosomal protein L4 gi|152028347|gb|ABS26115.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5] Length = 206 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 1/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V +LD + G I +++ +FA + + + V++ + R G K RS V+ Sbjct: 1 MAKFDVYDLDKKKVGEIELADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QK TGRAR S SQ+ GGGKA GP P + +PKKVR ALR AL+ + Sbjct: 61 GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSQE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ E KT L AL+ + + RN+ + L +G Sbjct: 121 QKLVIVQEWKPAEPKTSAAAKVLAKLGARKALV-VDAAANAALARSVRNLDGSDFLAAEG 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVYDIL+ LVL+ + LE Sbjct: 180 LNVYDILKHDALVLTAETAKMLEASL 205 >gi|114764143|ref|ZP_01443381.1| 50S ribosomal protein L4 [Pelagibaca bermudensis HTCC2601] gi|114543295|gb|EAU46311.1| 50S ribosomal protein L4 [Roseovarius sp. HTCC2601] Length = 177 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 1/176 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V LDG G + ++++IF L+P+ IL RV+RWQ + + G K K RSEV+Y+ Sbjct: 1 MKLDVIKLDGGAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+Y QKGTG ARH S+ FR GG GP P H LPKKVR L L+ ALS K + Sbjct: 61 KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRQLGLKLALSAKAKAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++I+N + KTK L ++ + L AL+IDG +++ NF AA NI +++LP Sbjct: 121 SLVIIENADAD-GKTKTLASQVKNLGWKRALVIDGAEVNENFARAAANIDGLDVLP 175 >gi|78211927|ref|YP_380706.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605] gi|109893649|sp|Q3AMN1|RL4_SYNSC RecName: Full=50S ribosomal protein L4 gi|78196386|gb|ABB34151.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605] Length = 211 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ V+ + + KT+ + L + + ++I + + RN+ + L+ Sbjct: 119 DDVTVVQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 SADQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|325280967|ref|YP_004253509.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712] gi|324312776|gb|ADY33329.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712] Length = 211 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 120/208 (57%), Gaps = 3/208 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +ELSV N+ G++ G I + + IF ++P + + ++ R G KSK R+E++ + Sbjct: 1 MELSVLNIAGQETGRKIVLDDAIFGIQPNEHAIYLDVKQFLANNRQGTHKSKQRNEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S +FRGGG+ FGPVP L KK++ LA + AL+ K + Sbjct: 61 TKKLKKQKGTGGARAGSIKNPEFRGGGRIFGPVPRDYSFKLNKKLKKLARKSALAVKASA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 N + V+++ + KTK +V L ++N L++ G ++ N L+ARN+ N+ ++ V Sbjct: 121 NAVKVVEDFTFEAPKTKQMVALMNNLQVNNGRLLLVLGNGVNENVLLSARNLQNVEVMRV 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 I Y++++ LVL +S++E L + F Sbjct: 181 SDIATYNVMKAKNLVLVESSVEGLNEMF 208 >gi|86610029|ref|YP_478791.1| 50S ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|109893646|sp|Q2JIM6|RL4_SYNJB RecName: Full=50S ribosomal protein L4 gi|86558571|gb|ABD03528.1| ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 316 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V+N GE G +S + + IL LR Q R G + +K R+EV Sbjct: 1 MASCVVKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP A+ +K R LALR AL + Sbjct: 61 GRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+++ KT+ + + +AL+I + + A RNI + L Sbjct: 119 EDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIV-AERSEAVERAVRNIARVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + INV+D+L ++++ SA+E L+ R+ Sbjct: 178 IGLDQINVFDLLNVDWVLITVSALEQLKARW 208 >gi|46199629|ref|YP_005296.1| 50S ribosomal protein L4 [Thermus thermophilus HB27] gi|161986604|ref|YP_144957.2| 50S ribosomal protein L4 [Thermus thermophilus HB8] gi|81567621|sp|Q72I05|RL4_THET2 RecName: Full=50S ribosomal protein L4 gi|149240889|pdb|1VSA|D Chain D, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 gi|160285431|pdb|1VSP|D Chain D, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh gi|300508633|pdb|3MRZ|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). gi|300508688|pdb|3MS1|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3mr8. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). gi|46197255|gb|AAS81669.1| LSU ribosomal protein L1E [Thermus thermophilus HB27] Length = 205 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+ Sbjct: 1 MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 56 GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 115 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++++ KTK + + L + L++ G + + AARN+P + L Sbjct: 116 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLA 172 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 +G+NVYDI+R +LV+ A E ++R Sbjct: 173 PEGLNVYDIVRTERLVMDLDAWEVFQNR 200 >gi|123966972|ref|YP_001012053.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515] gi|166199843|sp|A2BYT5|RL4_PROM5 RecName: Full=50S ribosomal protein L4 gi|123201338|gb|ABM72946.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515] Length = 210 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q +R G + + RSEV Sbjct: 1 MTTLETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 +DI +++ + KT ++ L + +++ + + NI + L+ Sbjct: 119 DDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSEVIKKSINNIAKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAINKIQEVY 208 >gi|304413146|ref|ZP_07394619.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola LSR1] gi|304283989|gb|EFL92382.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola LSR1] Length = 201 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++++ GV++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELAIKDTQ----GVLTVSETTFGRVFNEALVHQVVVAYAAVARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V+ + KTK L+ + + + L + LI+ D N LA+RN+ +++ V GI Sbjct: 117 RLIVVKEFSVEMPKTKLLLQKLKEMALEDVLIVTKEIAD-NLLLASRNLYKVDVCDVAGI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ K+V++ A++ +E+ Sbjct: 176 DPVSLIAFDKVVMTTDAVQQIEEML 200 >gi|149371630|ref|ZP_01891046.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49] gi|149355257|gb|EDM43817.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49] Length = 209 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 108/204 (52%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V + +G+ + +S++++ ++P + ++ +R G K+K R+E+A + Sbjct: 1 MKVAVLDKNGKATSRKVELSKEVYGIEPNNHAVYLDVKQYLANQRQGTHKAKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K ++ LA + AL+ K S Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYTFKLNKNLKRLARKSALTLKANS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++L KTK + L LS + + + N L++RN+ + ++ Sbjct: 121 ESILVLEDLNFDTPKTKDFTAVLKGLGLSGKKSLFVLGESNNNVYLSSRNLSGVEVIKAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 ++ Y I+ + +VL + ++E +E Sbjct: 181 ELSTYKIMNANNVVLFEGSLEGIE 204 >gi|325287049|ref|YP_004262839.1| 50S ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489] gi|324322503|gb|ADY29968.1| ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489] Length = 209 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V + G+D G + +S+ +FA++P + + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDSKGKDTGRKVDLSDSVFAIEPNKHAVYLDVKQYLAHQRQGNHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + A S K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNVKRLARKSAFSIKQNE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I+V+++ KTK ++L + N +I + N L++RN+ ++ Sbjct: 121 NAILVVEDFNFDAPKTKEFTQVLKSLGIENKKSLIVLGDSNNNVYLSSRNLKRSEVVINS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 ++ Y IL S +VL +SA+E + Sbjct: 181 ELSTYKILNASSVVLCESALEGI 203 >gi|123969296|ref|YP_001010154.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601] gi|166199844|sp|A2BTD6|RL4_PROMS RecName: Full=50S ribosomal protein L4 gi|123199406|gb|ABM71047.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601] Length = 210 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D+ +++ K+ KT ++ L + +++ + + NI + L+ Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|159904218|ref|YP_001551562.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211] gi|226730707|sp|A9BCP6|RL4_PROM4 RecName: Full=50S ribosomal protein L4 gi|159889394|gb|ABX09608.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211] Length = 211 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V + G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MANCVVLDWQGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 ND+M++ + K KT+ +V +++ ++I Q + RNI + ++ Sbjct: 119 NDLMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSEIIIRSVRNIERVKVI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 179 GADQLNVFDLLNANSLVIGEKALSTIKEVY 208 >gi|322812576|pdb|3PYO|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. gi|322812629|pdb|3PYR|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome. gi|322812682|pdb|3PYT|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. gi|322812735|pdb|3PYV|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome Length = 202 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+ Sbjct: 1 MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 56 GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 115 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++++ KTK + + L + L++ G + + AARN+P + L Sbjct: 116 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLA 172 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 +G+NVYDI+R +LV+ A E ++R Sbjct: 173 PEGLNVYDIVRTERLVMDLDAWEVFQNR 200 >gi|297242967|ref|ZP_06926905.1| ribosomal protein L4 [Gardnerella vaginalis AMD] gi|296889178|gb|EFH27912.1| ribosomal protein L4 [Gardnerella vaginalis AMD] Length = 221 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGIL------ARVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +L +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNASGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|225010518|ref|ZP_03700989.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C] gi|225005347|gb|EEG43298.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C] Length = 209 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V + G+D G +S+ +FA+ P + ++ +R G KSK R+E+A + Sbjct: 1 MKVAVLDSKGKDTGRKADLSDAVFAIDPNNHAIYLDVKQYLAHQRQGTHKSKERAEIAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S FRGGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSIKAGE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 I+V+++ KTK + ++L + N ++ + N L++RN+ +++ Sbjct: 121 KSIVVVEDFNLDAPKTKDFLQVLKSLGIDNKKSLVVLGDSNNNVYLSSRNLTQTDVVINS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 ++ Y IL + +VL + +I +E Sbjct: 181 ELSTYKILNATSIVLLEGSIAGIE 204 >gi|299470351|emb|CBN78400.1| 50S ribosomal protein L4P [Ectocarpus siliculosus] Length = 307 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 3 ELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 E+ V DG +S++ +F + ++ ++ V+RWQ R+R G ++K E++ +G Sbjct: 99 EVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSG 158 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG G AR +RGG KA GP L KK L LR ALS + Sbjct: 159 RKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREG 218 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L S KT ++ +A + + G F + NI +LP +G Sbjct: 219 QLKVVDDLKSDGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARG 278 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 NV+DI++ LVL++ A+ LE+ + Sbjct: 279 ANVHDIIKRPNLVLTQDAVTHLEEFLQ 305 >gi|254525728|ref|ZP_05137780.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT 9202] gi|221537152|gb|EEE39605.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT 9202] Length = 210 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +++ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D+ +++ K+ KT +V L + +++ + + NI + L+ Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIVNGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|260436231|ref|ZP_05790201.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109] gi|260414105|gb|EEX07401.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109] Length = 211 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D+ V+ + + KT+ + L + + ++I + + RN+ + L+ Sbjct: 119 EDVTVVKDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVL + A+ +++ + Sbjct: 179 SADQLNVFDLLHANALVLGEEALATIQEVY 208 >gi|298253072|ref|ZP_06976864.1| ribosomal protein L4 [Gardnerella vaginalis 5-1] gi|297532467|gb|EFH71353.1| ribosomal protein L4 [Gardnerella vaginalis 5-1] Length = 221 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGIL------ARVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +L +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ AL + LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALCYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|257456893|ref|ZP_05622074.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580] gi|257445602|gb|EEV20664.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580] Length = 211 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG++ I +++ +F L + ++ + + R+G + +KGR+EV + Sbjct: 1 MEKKVYSIDGKELRTIELNDAVFGLPVNEDVIYYAITNELANMRVGTASTKGRAEVNGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P +A+PKK + LA++ LS K + Sbjct: 61 AKPYKQKGTGRARRGDKKSPLLLGGGTIFGPKPRDYSYAIPKKAKRLAMKSILSLKAQDD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI++ + KTK L +A ++ D + A +NIP ++ L + Sbjct: 121 RLVVIEDFTVETGKTKDLAKILQAFVQDERTVLVLKDDDAMLKRAGKNIPTLSFLTYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +D+ K+++ +SA + L + Sbjct: 181 RAHDLFYGRKVLMLESAAKNLSSFY 205 >gi|209156522|pdb|3D5B|F Chain F, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156576|pdb|3D5D|F Chain F, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766799|pdb|3F1F|F Chain F, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766855|pdb|3F1H|F Chain F, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400 Length = 210 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+ Sbjct: 6 MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 61 GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 +++++ KTK + + L + L++ G + + AARN+P + L Sbjct: 121 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLA 177 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 +G+NVYDI+R +LV+ A E ++R Sbjct: 178 PEGLNVYDIVRTERLVMDLDAWEVFQNR 205 >gi|225621029|ref|YP_002722287.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1] gi|296126866|ref|YP_003634118.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563] gi|254803718|sp|C0QVZ7|RL4_BRAHW RecName: Full=50S ribosomal protein L4 gi|225215849|gb|ACN84583.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1] gi|296018682|gb|ADG71919.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563] Length = 215 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 8/214 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ + N +G+ G + + ++IF + +L ++ + +R G +K R+EV+ G Sbjct: 1 MEVVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGGK P P + LPKK++ AL LS K+ SN Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGSN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD-----RNFQLAARNIPNI 173 + V ++ KTK + + + + + G L+ RNI ++ Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNTRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ ++++ + ++ +K+A+ L R K Sbjct: 181 KLVNADSMSIHPLFYADEVYFTKTALSKLNARIK 214 >gi|163786189|ref|ZP_02180637.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1] gi|159878049|gb|EDP72105.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1] Length = 209 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++V +++G+D G +S+D++A++P + ++ +R G K+K R+E+ + Sbjct: 1 MKVAVLDINGKDTGRKAELSKDVYAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKGTG AR S F+GGG+ FGP P L K V+ LA + ALS K Sbjct: 61 TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYGFKLNKNVKRLARKSALSIKAND 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 IMV+++ + KTK + +AL++ N +I + N L++RN ++ Sbjct: 121 KSIMVMEDFNFEAPKTKNFINVLKALEVENKKSLIVLGGSNNNVYLSSRNFKGSEVVTAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ Y I+ +K++L + A+E +E Sbjct: 181 ELSTYKIMNANKVILLEGALEGIESNL 207 >gi|320451299|ref|YP_004203395.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01] gi|320151468|gb|ADW22846.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01] Length = 205 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V + G+ + + +++ +L V+RWQ ++R G + +K R EVAY+ Sbjct: 1 MYQIPVLSSSGKRELAADLPQEV-----NPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 56 SRKIYPQKHTGRARHGDIGAPIFVGGGTVFGPKPRDYSYTLPKKVRQAGLAMAVADRAKE 115 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++++++ KTK + + L + L++ +L + AARN+P + L Sbjct: 116 GKLLLVEDFAGVNGKTKEFLAWAKGAGLDGSESVLLVTASEL---VRRAARNLPWVVTLA 172 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 +G+NVYDILR +LV+ +A EA + R Sbjct: 173 PEGLNVYDILRTERLVMDLAAWEAFQAR 200 >gi|126697086|ref|YP_001091972.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301] gi|166199841|sp|A3PF46|RL4_PROM0 RecName: Full=50S ribosomal protein L4 gi|126544129|gb|ABO18371.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301] Length = 210 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 DI +++ K+ KT ++ L + +++ + + NI + L+ Sbjct: 120 -DIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI+ +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAIDKIQEVY 208 >gi|193214801|ref|YP_001996000.1| 50S ribosomal protein L4 [Chloroherpeton thalassium ATCC 35110] gi|226730640|sp|B3QY25|RL4_CHLT3 RecName: Full=50S ribosomal protein L4 gi|193088278|gb|ACF13553.1| ribosomal protein L4/L1e [Chloroherpeton thalassium ATCC 35110] Length = 210 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N DG + G + + IF ++P + +R + G K K RSEV+ Sbjct: 1 MEVKVLNKDGAETGETVELKPVIFEIEPNDHAIYLDVRSIMANQHQGTHKVKTRSEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTG AR S GGG FGP P V + KK++ LA ALS K + Sbjct: 61 GRKPYRQKGTGNARRGSSRSPVMIGGGAIFGPKPHDYVVGINKKMKRLARISALSYKAKN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+I+V+++ V E KTK +V+ ++L L ++ + + RNI +++L Sbjct: 121 NEIIVMEDYVPSEIKTKEVVSFLKSLGLNEKKTLLLMPSKNDVMYKSGRNISKLSILEAN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 + YD+L L++ KSA+E LE Sbjct: 181 KASTYDLLNNKTLLIQKSALETLE 204 >gi|87124963|ref|ZP_01080810.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917] gi|86167283|gb|EAQ68543.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917] Length = 211 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G+D G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MATCVVRDWQGKDAGKASLDLKVAKESTATDLMHRAVLRQQAHMRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL +F + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARFEA 120 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 I V+ + KT+ + L + + ++I + + RN+ + L+ Sbjct: 121 --ITVVKDFGASLDVPKTREISDALGRLGIAADSKVLIILSNPSEVVRRSVRNLDKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L LV+ + A+ +++ + Sbjct: 179 AADQLNVFDLLNAQALVVGEDALATIQEVY 208 >gi|283782759|ref|YP_003373513.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis 409-05] gi|283440975|gb|ADB13441.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis 409-05] Length = 221 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGIL------ARVLRWQSWRKRIGCSKSKGRS 55 + L+V + G G + +IF + + +L +V+ Q R G K R+ Sbjct: 4 VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62 Query: 56 EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115 V+ G K + QKGTGRAR S Q+ GG GPVP PKK+++ ALR+ LS Sbjct: 63 NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 D+ + I V+D + TK V + + + + + N ++ RNIP +++ Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + +N YD++ +V SK EA Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209 >gi|116072563|ref|ZP_01469829.1| 50S ribosomal protein L4 [Synechococcus sp. BL107] gi|116064450|gb|EAU70210.1| 50S ribosomal protein L4 [Synechococcus sp. BL107] Length = 211 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKEATAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R ALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +DI V+ + + KT+ + L + ++I + + RN+ + L+ Sbjct: 119 DDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 179 SANHLNVFDLLHANSLVVGEDALTTIQEVY 208 >gi|303233121|ref|ZP_07319794.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4] gi|302480706|gb|EFL43793.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4] Length = 208 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N++G+ + +S ++F ++P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIDVLNVEGKKADAVELSSNVFGIEPNIAVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+ GGG FGP P KK + LA+R LS K Sbjct: 61 GVKPFRQKGTGRARQGTIRAPQWAGGGVVFGPTPHSHALRSNKKEKKLAMRSVLSGKVAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++D L +E K +AL L + + D L+ RN+P + + Sbjct: 121 GELVLLDKLAFEEPSCKQAAAIIKALGLQDKRVTLVVDDDDVVSYLSFRNLPKVIIYAAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N ++ + LV++ + + LE+ Sbjct: 181 EVNTRILIDNAALVMTVAVAKQLEEAL 207 >gi|171462880|ref|YP_001796993.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226730704|sp|B1XSQ2|RL4_POLNS RecName: Full=50S ribosomal protein L4 gi|171192418|gb|ACB43379.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 206 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + +G + S ++F + + ++ +V+ R G K R +V +T Sbjct: 1 MELKLLQDNGILGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGG+ F P + KK+ +R LS Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLARE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + VID KTK L + +A+ L + LII Q+ N LA+RN+ + ++ Q Sbjct: 121 GRLNVIDQFNLDAPKTKVLAEKMKAMGLDSVLIIVD-QVSENLYLASRNLHKVAVVEPQH 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 + +++ K+++SK+AI +E+ K Sbjct: 180 ADPLALVQYKKVLVSKAAITKIEELLK 206 >gi|312200019|ref|YP_004020080.1| ribosomal protein L4/L1e [Frankia sp. EuI1c] gi|311231355|gb|ADP84210.1| ribosomal protein L4/L1e [Frankia sp. EuI1c] Length = 234 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V G + G + +IF ++ ++ +V+ Q R G +K R EV G Sbjct: 23 TVTVHAPAGGEGGTAELPGEIFDVQVNVPLIHQVVVAQQAAARQGTHDTKTRGEVRGGGK 82 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ +N Sbjct: 83 KPYRQKGTGRARQGSLRAPQFAGGGTVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNR 142 Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+ + V + TK ++ + S +++ + D + RN+ ++LL + Sbjct: 143 VHVVSSFVDGETPSTKAALSALLEIASSRRVLVVVERTDELTWKSLRNVSTVHLLDPGQL 202 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 N YD++ +V ++ A+ + R K Sbjct: 203 NTYDVMISDDVVFTQGALASFIGRGK 228 >gi|194477057|ref|YP_002049236.1| 50S ribosomal protein L4 [Paulinella chromatophora] gi|171192064|gb|ACB43026.1| 50S ribosomal protein L4 [Paulinella chromatophora] Length = 211 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V + G++ G +V+ + L ++ R + Q +R G + + RSEV G K Y Sbjct: 6 VHDWQGQEAGKATVNLKVAKLSSAIDLMHRAVLRQLAHQRQGTASTLTRSEVKGGGRKPY 65 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S GGG FGP P + KK R LALR AL + + +V Sbjct: 66 KQKGTGRARQGSTRTPLRPGGGVVFGPSPRTYSLGMNKKERRLALRTALMSRAEDS--IV 123 Query: 126 IDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I + KTK + + ++I + RN+P + L+ + Sbjct: 124 IKGFGTGIDKPKTKTITDALERFGIGKETKVLIILDSPSSAITYSIRNLPKVKLIKADQL 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NV+D+L SK++LS+ A+ +E+ + Sbjct: 184 NVFDLLHASKVLLSEEALARIEEVY 208 >gi|218294755|ref|ZP_03495609.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23] gi|218244663|gb|EED11187.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23] Length = 213 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 5/204 (2%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V + G+ + ++ ++ +L V+RWQ +R G + +K R EVAY+G Sbjct: 11 QIPVISPAGKRELAANLPGEV-----NPHLLWEVVRWQLASRRRGTASTKTRGEVAYSGR 65 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+Y QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 66 KIYPQKHTGRARHGDIGAPIFVGGGTVFGPKPRDYSYTLPKKVRKAGLAMAVADRAKEGK 125 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++++ + + KT+ + + + L + + D + AARN+P + L +G+N Sbjct: 126 LLLVEAFLGVQGKTREFLAWAKEVGLDGSETVLLVTADEAVRRAARNLPWVVTLAPEGLN 185 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VYDILR +LV+ A E ++R Sbjct: 186 VYDILRTGRLVMDLKAWEVFQERL 209 >gi|307718207|ref|YP_003873739.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM 6192] gi|306531932|gb|ADN01466.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM 6192] gi|315186330|gb|EFU20091.1| LSU ribosomal protein L4P [Spirochaeta thermophila DSM 6578] Length = 208 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V +L GE I +++ +FA + G + +R + R+G + +K R+EV+ +G Sbjct: 1 METQVYSLKGEPIKTIELNDRVFACEVSHGSIYHAIRNELANMRVGTASTKTRAEVSGSG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + + GGG FGP P + LP+KV+ LA R LS K N Sbjct: 61 RKPWRQKGTGRARAGERRSPLWVGGGVVFGPKPREYGYKLPRKVKRLAYRSVLSLKLREN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 V+++ V + KTK +V +AL+ L++ G + + A RNIP + + Sbjct: 121 AFRVVEDFVVESGKTKDMVKALQALNPEGRRVLLVIGEE-SALTKRAGRNIPWLLVHTYD 179 Query: 180 GINVYDILRCSKLVLSKSAIEALE 203 + V+D+ ++++ +SA L Sbjct: 180 KLRVHDVFYADQVLVQESAAVKLN 203 >gi|33862113|ref|NP_893674.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577194|sp|Q7UZU8|RL4_PROMP RecName: Full=50S ribosomal protein L4 gi|33634331|emb|CAE20016.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 210 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +S+ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRIS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D +++ + KT ++ L + +++ + + N+ + L+ Sbjct: 120 -DFKTVEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSDVIKKSINNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAINKIQEVY 208 >gi|124023996|ref|YP_001018303.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303] gi|166199842|sp|A2CC28|RL4_PROM3 RecName: Full=50S ribosomal protein L4 gi|123964282|gb|ABM79038.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303] Length = 211 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E V + G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR + GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARL-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+ + K KT+ + L + ++I + + RN+ + L+ Sbjct: 119 EDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVLS+ A+ +++ + Sbjct: 179 AADQLNVFDLLHANSLVLSEEALAKIQEVY 208 >gi|157414162|ref|YP_001485028.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215] gi|166990951|sp|A8G761|RL4_PROM2 RecName: Full=50S ribosomal protein L4 gi|157388737|gb|ABV51442.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215] Length = 210 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L DG+ G +++ + ++ R + Q KR G + + RSEV Sbjct: 1 MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D+ +++ K+ KT ++ L + +++ + + NI + L+ Sbjct: 120 -DMKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KL++ +SAI+ +++ + Sbjct: 179 AADQLNVFDILNANKLLIGQSAIDKIQEVY 208 >gi|189485086|ref|YP_001956027.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287045|dbj|BAG13566.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 206 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V + GE+KG I + + F K +L V R G K+K R EV+++G Sbjct: 1 METTVYDAKGEEKGKIELPD-FFGKKVSVALLHEVTMAYLNNLRAGTHKTKTRGEVSFSG 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTG AR K+ +R GG FGP P + K+ + L+L A S + + Sbjct: 60 AKPWKQKGTGNARAGQKNSPLWRKGGIIFGPQPRNYYTKISKRKKKLSLDMAFSAQLKNG 119 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I+V+D++ E KTK + + L + I+ D +F++AARNI N+ + ++ I Sbjct: 120 NIIVVDSVKVSEVKTKKVAELIKNLKVGGKKIVFAIPSDTDFKVAARNIKNVIVENIKNI 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N Y +L KLV++ A++ +++R Sbjct: 180 NAYQVLWADKLVITPEAVDLIKER 203 >gi|78185523|ref|YP_377957.1| 50S ribosomal protein L4 [Synechococcus sp. CC9902] gi|109893648|sp|Q3AUW2|RL4_SYNS9 RecName: Full=50S ribosomal protein L4 gi|78169817|gb|ABB26914.1| LSU ribosomal protein L4P [Synechococcus sp. CC9902] Length = 211 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M VR+ G++ G ++ + ++ R + Q R G + + RSEV Sbjct: 1 MASCVVRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R ALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +DI V+ + + KT+ + L + ++I + + RN+ + L+ Sbjct: 119 DDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 179 SANHLNVFDLLHANSLVVGEDALTTIQEVY 208 >gi|262203623|ref|YP_003274831.1| 50S ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247] gi|262086970|gb|ACY22938.1| ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247] Length = 221 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ DG+ G + + ++F ++ +V+ Q R G +K R +V G+ Sbjct: 10 TLDVKTADGKTNGTVDLPAELFDAPANIALMHQVVVAQQAAARQGTHATKTRGDVRGGGA 69 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRAR S QF GGG GP P PKK+++ ALR ALSD+ + Sbjct: 70 KPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 129 Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I VI LVS + TK +L ++ + D + N+ N+ + + Sbjct: 130 IHVITELVSGQVPSTKSARQFLESLSDRRKFLVVLGREDLTAWKSVANLGNVLPIAPDQL 189 Query: 182 NVYDILRCSKLVLSKSAIEAL 202 N YD+L ++V S + A Sbjct: 190 NTYDVLYSDEVVFSVETLNAF 210 >gi|253995719|ref|YP_003047783.1| 50S ribosomal protein L4/L1e [Methylotenera mobilis JLW8] gi|253982398|gb|ACT47256.1| ribosomal protein L4/L1e [Methylotenera mobilis JLW8] Length = 208 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL + + +G+ ++VSE F + + ++ +V+ R KGR VA+T Sbjct: 1 MELKLIDKNGKPAKKGVTVSEGTFGREFNEALVHQVVVGYMANARTATRAQKGRDTVAHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119 K Y QKGTG AR S +RGGG+AF P H + +K ++ LS+ Sbjct: 61 THKPYAQKGTGNARSGMSSSPIWRGGGRAFPNSPNENFSHKVNRKAYRAGMQTILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V++ KTK L + + + + +++ + N L++RN+ N+ ++ Q Sbjct: 121 QDRLSVVEEFSVDTPKTKALAEKVKGMGYAGGVLVLTDSFNENLYLSSRNLTNVMVVEAQ 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++R +V ++ A++ LE+ Sbjct: 181 FADPVSLVRFPNVVATEGAVKKLEEML 207 >gi|300870646|ref|YP_003785517.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000] gi|46577291|sp|Q9FA03|RL4_BRAPL RecName: Full=50S ribosomal protein L4 gi|11036694|gb|AAG27265.1| L4 ribosomal protein [Brachyspira pilosicoli] gi|300688345|gb|ADK31016.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000] Length = 215 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 8/214 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+ + N +G+ G + V ++IF + +L ++ + +R G +K R+EV+ G Sbjct: 1 MEVVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGGK P P + LPKK++ AL LS K+ +N Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD-----RNFQLAARNIPNI 173 + V ++ KTK + + + + + G L+ RNI ++ Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNSRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+ ++++ + ++ +K+A+ L R K Sbjct: 181 KLVNADSMSIHPLYYADEVYFTKTALSKLNARIK 214 >gi|268316409|ref|YP_003290128.1| 50S ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252] gi|262333943|gb|ACY47740.1| ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252] Length = 214 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL V LDG + G +++ +F ++P +L ++ +R G K K R+E A++ Sbjct: 1 MELQVYRLDGSESGRTVTLDPTVFEIEPNDHVLWLDVKRIEANRRQGTHKVKNRAENAHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTG AR RGGG A GP P + +K + LA R AL+ K + Sbjct: 61 TRKLYRQKGTGYARAGDAKSPIRRGGGTAHGPQPRSYELKVNRKTQRLARRSALTYKAQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I V+++ ++ T+ L+ A L +++ + + L++RN+P + +L + Sbjct: 121 EAIRVVEDFTFEQPSTRRLLEVLAAQGLADRKVLLLTGEYNPALYLSSRNLPKVRVLEAR 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 + D+L L++ +SA+E L + Sbjct: 181 NASTRDLLDAQVLLMQESAVEVLNRMLR 208 >gi|281206127|gb|EFA80316.1| hypothetical protein PPL_07147 [Polysphondylium pallidum PN500] Length = 318 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 3/204 (1%) Query: 4 LSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V N ++ G I + + IF++ + IL R++RWQ + G ++ ++ T Sbjct: 111 VPVVNFKSKENVGEIQLLKSIFSVPLRVDILHRIVRWQRAKAMQGTHYAQNMGDIDRTNK 170 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR + Q +GG +AF P P +LPKKVR L L+ AL+ K N Sbjct: 171 KPFSQKGTGRARQGTNHAIQMKGGARAFPPKPRDHSFSLPKKVRRLGLKVALATKLAQNK 230 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +++++NL + KTK L T +L++D ++ N LA NI I+LLP +G+N Sbjct: 231 LVIVENLELESHKTKDLDTLLPE-QWGRSLLVD-KEISSNLSLAGFNIKRIDLLPERGLN 288 Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206 VY IL+ LVL++++++ ++ R Sbjct: 289 VYSILQKDTLVLTRASLDEIQKRL 312 >gi|33864000|ref|NP_895560.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313] gi|46577197|sp|Q7V541|RL4_PROMM RecName: Full=50S ribosomal protein L4 gi|33635584|emb|CAE21908.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313] Length = 211 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M E V + G++ G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR + GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+ + K KT+ + L L ++I + + RN+ + L+ Sbjct: 119 EDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LVLS+ A+ +++ + Sbjct: 179 AADQLNVFDLLHANSLVLSEEALAKIQEVY 208 >gi|17987041|ref|NP_539675.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. 16M] gi|17982697|gb|AAL51939.1| lsu ribosomal protein l1e (= l4p) [Brucella melitensis bv. 1 str. 16M] Length = 201 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 88/166 (53%), Positives = 120/166 (72%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR +V+ TG Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SKMY QKGTGRARH S QFRGGG+A GPV H LPKKVR+L LRHALS K ++ Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAA 166 >gi|223936427|ref|ZP_03628339.1| ribosomal protein L4/L1e [bacterium Ellin514] gi|223894945|gb|EEF61394.1| ribosomal protein L4/L1e [bacterium Ellin514] Length = 208 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ---QGILARVLRWQSWRKRIGCSKSKGRSEVA 58 ++L ++++ G +G + V F+L + + +R G + +K EVA Sbjct: 1 MKLKIQDIKGNSQGEMDVK---FSLVTNGRGTQAVHDAVVAYRAAQRSGTACAKTVGEVA 57 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 + K + QKGTGRAR S +RGGG FGP P + + + LA R AL+++ Sbjct: 58 GSNKKPWKQKGTGRARAGSVRSPLWRGGGVVFGPRPRDFSKKISRSTKQLAFRKALTERL 117 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + D++V+DN KTK V AL + ++ LD N A+RN+ + + Sbjct: 118 NAGDVLVVDNFKLASAKTKEFVGVLTALKVEGTALVVADALDANLSRASRNVAKVEVATS 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y ILR KLV ++SA E +E+R Sbjct: 178 DSVNTYQILRSDKLVFTRSAFEKVEERL 205 >gi|116786479|gb|ABK24122.1| unknown [Picea sitchensis] Length = 312 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V DGE G S+ + ++ R + + +R G + + R+EV G Sbjct: 55 VTLPVLTFDGERAGEASLDLKCARPDTARAVVHRGVITELQNRRRGTASTLTRAEVRGGG 114 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S+ GGG FGP P + KK + LA+ AL + Sbjct: 115 RKPYRQKGTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKMNKKEKRLAISTALMS--ATV 172 Query: 122 DIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLP 177 +V+++ + KTK + + + S +I ++ N +L++RNI + +L Sbjct: 173 STVVVEDFNDKFERPKTKEFIEALKRWGVEPSEHTLIFSTEVSENVRLSSRNIGTLKVLT 232 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YD+LR KLV ++ ++E L + Sbjct: 233 PRNLNLYDVLRADKLVFTEGSVEYLNRMY 261 >gi|297170807|gb|ADI21827.1| hypothetical protein [uncultured gamma proteobacterium HF0130_25M15] Length = 205 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ ++N + I +S+ +F + G++ ++ R K RS V+ G Sbjct: 1 MKIDLKNQENSTVKSIDISDSVFKAEINDGLIHELVTAYRSNGRSATKGQKNRSRVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + + GGG AF V + KK A++ S Sbjct: 61 AKPWRQKGTGRARAGTTRGPLWVGGGMAFATVDRNYTKKINKKAYKRAMQSIFSALTKEK 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+ ID++ KTK + +L++ NALII QL+ N L+ RN+P+I ++ V+ + Sbjct: 121 RIIAIDSIKIDSPKTKLGIELLNSLEIENALIIV-SQLESNLHLSLRNVPHITVISVENV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + +L +V+ + A LE F Sbjct: 180 DPISLLSHETIVIDQEAFNKLEGMF 204 >gi|119718124|ref|YP_925089.1| 50S ribosomal protein L4P [Nocardioides sp. JS614] gi|119538785|gb|ABL83402.1| LSU ribosomal protein L4P [Nocardioides sp. JS614] Length = 259 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +IF ++ ++ +V+ Q R G +K R EV G K Y QKGTGRAR Sbjct: 56 VDFPAEIFDVELNVPLIHQVVVAQQAAARQGTHATKTRGEVRGGGRKPYKQKGTGRARQG 115 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECK 135 S QF GGG GP P PKK++ ALR ALSD+ ++ I V+++L ++ Sbjct: 116 STRAPQFAGGGTVHGPQPRSYDQRTPKKMKVAALRGALSDRARNDRIHVVESLITAEAPS 175 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 T+ + L + ++ + D L+ RN P ++++ V +N YD+L +V + Sbjct: 176 TRTALAALSTLSERSRFLVVLERTDTVTWLSLRNAPEVHIVAVDQLNTYDVLASDDVVFT 235 Query: 196 KSAIEAL 202 + A +A Sbjct: 236 QGAYDAF 242 >gi|225629697|ref|ZP_03787669.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591450|gb|EEH12518.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 201 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 2/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E ++ NL ++ G ++ IF+ K + IL ++RWQ +R G K+KG S+V+ T Sbjct: 1 MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLANRRAGTHKTKGISDVSGTT 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QK T RAR S QFRGGG P ++L KKVR L+ ALS K+ +N Sbjct: 61 AKPYGQKRTARARPGSLRSPQFRGGGIILRPFVRSHTYSLNKKVRKFGLKIALSLKYLNN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++DNL KT + + S+ I+ D AA+N+ ++L+ G+ Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFSIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178 Query: 182 NVYDILRCSKLVLSKSAIEALE 203 NV+DIL ++L+K ++ LE Sbjct: 179 NVFDILNHECVMLTKDTLKHLE 200 >gi|116075766|ref|ZP_01473025.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916] gi|116067081|gb|EAU72836.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916] Length = 211 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V++ G+D G S+ + ++ R + Q R G + + R+EV Sbjct: 1 MANCVVKDWQGKDAGKASLELKVAKETTANDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P A+ +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+ + + KT+ + L + +++ + + RN+ + L+ Sbjct: 119 EDLVVVKDFGTNLEAPKTREITDALGRLGIAADAKVLLVLTNPSEVVRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ ++A+ +++ + Sbjct: 179 AADQLNVFDLLNANNLVVGETALATIQEVY 208 >gi|308233853|ref|ZP_07664590.1| LSU ribosomal protein L4P [Atopobium vaginae DSM 15829] gi|328943561|ref|ZP_08241026.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829] gi|327491530|gb|EGF23304.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829] Length = 208 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 1/207 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V+N++G+ + +S D+F ++P ++ +V+ R G +K RS V+ Sbjct: 1 MSKIEVKNVEGKSADTLELSSDVFGIEPNIPVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + Q+ GGG FGP P K + LA++ LS K Sbjct: 61 GVKPFRQKGTGRARQGTIRAPQWVGGGVVFGPTPHSHALRSNNKEKKLAMKSVLSGKLAD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++V+D ++ TK +AL+L N + + D L+ RN+P + + Sbjct: 121 GELIVLDKFAFEKASTKQAAAIIKALELQNKRVTLVVDDDDVETYLSFRNLPKVVIYASS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N ++ + LV++ + LE+ Sbjct: 181 EVNTRILVDNAALVMTVDVAKQLEEAL 207 >gi|78780034|ref|YP_398146.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9312] gi|109893618|sp|Q318I5|RL4_PROM9 RecName: Full=50S ribosomal protein L4 gi|78713533|gb|ABB50710.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. MIT 9312] Length = 210 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + DG+ G + + + ++ R + Q KR G + + RSEV Sbjct: 1 MTTIETLKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRIS- 119 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 D+ +++ K+ KT ++ L + +++ + + NI + L+ Sbjct: 120 -DVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSEVIKKSINNIEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+DIL +KLV+ +SAI +++ + Sbjct: 179 AADQLNVFDILNANKLVIGQSAINKIKEVY 208 >gi|62287203|sp|Q5SHN9|RL4_THET8 RecName: Full=50S ribosomal protein L4; AltName: Full=L1e gi|116668237|pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. gi|116668298|pdb|2J03|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. gi|119389738|pdb|2HGJ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. gi|119389795|pdb|2HGQ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgp. gi|119389851|pdb|2HGU|F Chain F, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgr. gi|157836524|pdb|2V47|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. gi|157836580|pdb|2V49|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2. gi|211938858|pdb|2JL6|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 2 Of 4). This File Contains The 50s Subunit. gi|211938916|pdb|2JL8|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 4 Of 4). This File Contains The 50s Subunit. gi|226887439|pdb|2WDI|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887471|pdb|2WDJ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|226887528|pdb|2WDL|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule I. gi|226887585|pdb|2WDN|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 50s Subunit For Molecule Ii. gi|237823569|pdb|2WH2|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823628|pdb|2WH4|F Chain F, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|260100015|pdb|3HUX|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule I. gi|260100071|pdb|3HUZ|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 50s Subunit For Molecule Ii. gi|261824524|pdb|2WRJ|F Chain F, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 2 Of 4). gi|261824586|pdb|2WRL|F Chain F, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State. (Part 4 Of 4). gi|261824649|pdb|2WRO|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 2 Of 4). gi|261824708|pdb|2WRR|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 4 Of 4). gi|281307196|pdb|3KIR|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 2 Of 4) gi|281307254|pdb|3KIT|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 4 Of 4) gi|281307312|pdb|3KIW|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 2 Of 4) gi|281307370|pdb|3KIY|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 4 Of 4) gi|288965634|pdb|3KNI|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule I gi|288965666|pdb|3KNK|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 50s Subunit For Molecule Ii. gi|288965698|pdb|3KNM|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule I. gi|288965730|pdb|3KNO|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome. Thi Contains The 50s Subunit For Molecule Ii gi|294979478|pdb|3I8F|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f (50s). gi|294979558|pdb|3I8I|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g (30s). gi|294979616|pdb|3I9C|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B. The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule A In The S Asymmetric Unit Is Deposited As 3i9d (30s) And 3i9e (50s) gi|294979670|pdb|3I9E|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A. The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule B In The S Asymmetric Unit Is Deposited As 3i9b (30s) And 3i9c (50s) gi|295982115|pdb|2X9S|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982174|pdb|2X9U|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|307568002|pdb|2XG0|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 2 Of 4) gi|307568060|pdb|2XG2|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 4 Of 4) gi|309320290|pdb|3OH5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320320|pdb|3OH7|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Chloramphenicol. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320392|pdb|3OHJ|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320422|pdb|3OHK|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320473|pdb|3OHZ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320524|pdb|3OI1|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320575|pdb|3OI3|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320626|pdb|3OI5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|312207714|pdb|2XQE|F Chain F, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s Ribosome With A Gtp Analog gi|313754038|pdb|2XTG|F Chain F, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) gi|313754096|pdb|2XUX|F Chain F, Trna Tranlocation On The 70s Ribosome: The Post- Translocational Translocation Intermediate Ti(Post) gi|325533443|pdb|2Y0V|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533502|pdb|2Y0X|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533561|pdb|2Y0Z|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533620|pdb|2Y11|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533679|pdb|2Y13|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533738|pdb|2Y15|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533797|pdb|2Y17|F Chain F, Ef-Tu Complex 3 gi|325533856|pdb|2Y19|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|55773073|dbj|BAD71514.1| 50S ribosomal protein L4 [Thermus thermophilus HB8] Length = 210 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 11/206 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+G Sbjct: 8 QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 63 KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ KTK + + L + L++ G + + AARN+P + L + Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 G+NVYDI+R +LV+ A E ++R Sbjct: 180 GLNVYDIVRTERLVMDLDAWEVFQNR 205 >gi|224510784|pdb|3FIN|F Chain F, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 208 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 11/206 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+G Sbjct: 8 QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 63 KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ KTK + + L + L++ G + + AARN+P + L + Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 G+NVYDI+R +LV+ A E ++R Sbjct: 180 GLNVYDIVRTERLVMDLDAWEVFQNR 205 >gi|327399522|ref|YP_004340391.1| 50S ribosomal protein L4/L1e [Hippea maritima DSM 10411] gi|327182151|gb|AEA34332.1| ribosomal protein L4/L1e [Hippea maritima DSM 10411] Length = 207 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V + + G + ++ +K + + RV+R R G + +K R EV+ G Sbjct: 1 MKVKVVDKKNQAVGEVEINIQPKEVKNKGVLFNRVVRAMLMNARQGTASTKTRGEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG FGP P + KK + +A AL+ + Sbjct: 61 KKPWRQKGTGRARAGSIRSPLWVGGGVIFGPKPRDYELKMNKKEKRVAFIEALAQRIEEG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VID+L ++ KT+ + L+L AL + + N L+ RNI + + + + Sbjct: 121 KLIVIDDLSFEKPKTRDAYEIVKNLNLKKALFVLEKGM-ENAYLSLRNIKGVEVRNIDTL 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N YD+LR +++ K+ +E L R Sbjct: 180 NTYDVLRFQNIIIPKTVVEKLNGR 203 >gi|328720672|ref|XP_001945994.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Acyrthosiphon pisum] Length = 282 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 6/210 (2%) Query: 3 ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + V NLD +I + +F +P+ I+ + WQ K + + +K +EV Sbjct: 51 QAWVSNLDTIKENPSTIIDLHPQVFGSRPRIDIIHENVVWQKKYKYVSYANTKVTAEVNM 110 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 + K + QKG GRARH ++ FRGG GP + LP R L LS K Sbjct: 111 SSKKPWPQKGQGRARHGTRRSPLFRGGSVIHGPRSHTTHFYMLPFYKRVYGLTSTLSVKL 170 Query: 119 CSNDIMVIDNLVS--KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +D+ V++NL + + R S I D + +N LA I ++NL+ Sbjct: 171 IQDDLHVVNNLDIPTDDPGYINDLVDSRLWGPSVLFIDDTDTMPKNISLALNQIKHMNLM 230 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 PV G+NVY +L+ LVL+ +A++ +++R Sbjct: 231 PVYGLNVYSMLKYETLVLTVAAVKKIQERL 260 >gi|302337478|ref|YP_003802684.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293] gi|301634663|gb|ADK80090.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293] Length = 209 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 107/205 (52%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V ++ GE+ I++++ +F + +G + + + +R+G + +K R+EV + Sbjct: 1 MDAKVFSIKGEEVRTIALNDSVFGREVSEGAIYYAVNSELANRRVGTACTKTRAEVKGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 SK + QKGTG AR K + GGG FGP P LPKK++ LA++ LS K + Sbjct: 61 SKPWRQKGTGHARSGDKKSPVWVGGGTIFGPKPRDYGFRLPKKMKRLAMKSVLSLKAKED 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I V+++ + KTK LV +AL ++ D + A +NIP + +L + Sbjct: 121 AIKVVEDFTVESGKTKDLVGILKALVPEKRTVVVLKDDDAMIRRAGKNIPWVRMLSYNRM 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +V ++ +VL ++A +L D + Sbjct: 181 SVRELFYGKNIVLLETAAGSLNDFY 205 >gi|326332192|ref|ZP_08198472.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1] gi|325949898|gb|EGD41958.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1] Length = 299 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 1/187 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + +IF ++ ++ +V+ Q R G +K R EV G K Y QKGTGRAR Sbjct: 7 KVDFPAEIFDVELNIPLIHQVVVAQQAAARQGTHATKTRGEVRGGGRKPYKQKGTGRARQ 66 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S QF GGG GP P PKK+++ ALR ALSD+ + I V + + Sbjct: 67 GSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARAGQIHVAE-FAFEAPS 125 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK +T +A+ + ++ + + L+ RN P ++LL +N YD+L +V S Sbjct: 126 TKTALTALKAISDAKRFLVVLDRSESAAALSLRNAPEVHLLWADQLNTYDVLVSDDVVFS 185 Query: 196 KSAIEAL 202 K A E Sbjct: 186 KPAYEIF 192 >gi|1033073|gb|AAA97862.1| ribosomal protein L4 [Thermus thermophilus] gi|1586538|prf||2204237A ribosomal protein L4 Length = 210 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 11/206 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V + G + + +L V+RWQ ++R G + +K R EVAY+G Sbjct: 8 QIPVLSPSGRRDVAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 63 KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ KTK + + L + L++ G + + AARN+P + L + Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 G+NVYDI+R +LV+ A E ++R Sbjct: 180 GLNVYDIVRTERLVMDLDAWEVFQNR 205 >gi|27904941|ref|NP_778067.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397671|sp|Q89A69|RL4_BUCBP RecName: Full=50S ribosomal protein L4 gi|27904339|gb|AAO27172.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 202 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +R+ ++ V++VS+ F + ++ +V+ S R G K RSEV+ +G Sbjct: 1 MELVLRD---DEHSVLNVSDITFGRDFNEALVHQVIISYSSSIRQGTHAQKNRSEVSGSG 57 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ S+ Sbjct: 58 KKPWRQKGTGRARVGSLRSPLWRSGGVTFAAKPKSFYQKINKKMYRGALKSIFSELIRQK 117 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V + KT+ L+ + R + L + LII + D N +LA+RN+ +++ V + Sbjct: 118 RLVVFREFTIEFPKTRLLIDKLRDIKLHDVLIITKTK-DNNLKLASRNLYKVDVQTVNHM 176 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N ++ + ++++ AI+ +E+ Sbjct: 177 NPRSLISFNHVLITSKAIQKVEELL 201 >gi|118595334|ref|ZP_01552681.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181] gi|118441112|gb|EAV47739.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181] Length = 208 Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E + + G+ K S+DIFA + + ++ +++ R K R+EV ++ Sbjct: 1 MEFKILDKSGKLSKKTHKASDDIFASEFNESLIHQLVTSYMSNGRSVTRAQKTRAEVKHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR S +RGGG+AF P KK +A++ LS+ Sbjct: 61 TRKPFRQKGTGNARAGMTSSPIWRGGGRAFPNRPDENYTQKFNKKAYRVAMKSILSELVR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +I+ KTK V + + L ++ +++ D N L++RN+ N ++ + Sbjct: 121 QERLSIIEEFKIDSPKTKQFVEKIKTLGITENVLVLIDSFDENLYLSSRNLTNALVVEAK 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++ SK++ + A++ LE+ F Sbjct: 181 YADPVSLVHFSKVIATTEAVKQLEEMF 207 >gi|330837654|ref|YP_004412295.1| 50S ribosomal protein L4P [Spirochaeta coccoides DSM 17374] gi|329749557|gb|AEC02913.1| LSU ribosomal protein L4P [Spirochaeta coccoides DSM 17374] Length = 209 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + +G++ I +++ +FA + G + + + +R+G + +K R+EV Y+ Sbjct: 1 METKVYSTEGKEIRTIQLNDAVFAREVSDGSIYYAVNNELANRRVGTACTKTRAEVNYSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTG AR K + GGG FGP P + +PKKV+ LA++ LS Sbjct: 61 AKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYVIPKKVKRLAMKSLLSLSVQEE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+++ ++ KTK L+ + L+ LII D + AA+NIPN+ +L Sbjct: 121 RLVVVEDFTAESGKTKELMAILKNFMEGLNRTLIILKDD-DVLLRRAAKNIPNVRVLSYN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + ++L K+++ ++A + L D + Sbjct: 180 RLAAKELLYGRKVIVMETAAKNLNDFY 206 >gi|33241160|ref|NP_876102.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577200|sp|Q7V9W3|RL4_PROMA RecName: Full=50S ribosomal protein L4 gi|33238690|gb|AAQ00755.1| Ribosomal protein L4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 211 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 6/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S++ + ++ R + Q R G + + R+EV Sbjct: 1 MANCAVLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P ++ +K R LALR AL +F Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRLALRTALMARF-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLL 176 ND++ + + K KTK + LD+S + ++I Q + + RN+ + L+ Sbjct: 119 NDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLI 178 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +NV+D+L + L++ + A+ +++ + Sbjct: 179 AAEHLNVFDLLNANSLIIGEDALGKIKEVY 208 >gi|320165535|gb|EFW42434.1| ribosomal protein L4/L1e [Capsaspora owczarzaki ATCC 30864] Length = 542 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 1/191 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++S+S+ +F P+ ++ R + W +R G + +K ++EV G K QK TGRAR Sbjct: 237 LMSLSDYVFGAAPRTDLIHRYVLWHLACQRAGTASTKTKAEVRGGGRKPRPQKHTGRARL 296 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S RGGG AFGP P + LPK VR ALR ALS K+ D+ ++D+L K Sbjct: 297 GSIRSPMMRGGGVAFGPKPKSFAYVLPKTVRRFALRAALSIKYAQGDLQIVDSLSPIVHK 356 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 KY+ R+ +L+NAL++D + N A + + + V ++VYDI++ SKLVL+ Sbjct: 357 AKYVGHILRSNNLTNALLVD-EKASPNLIRGASTMQTVKAVSVDALSVYDIMKYSKLVLT 415 Query: 196 KSAIEALEDRF 206 A+ ALED Sbjct: 416 TKAVAALEDFL 426 >gi|254672672|emb|CBA06527.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha275] Length = 185 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 24 FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQF 83 FA + + ++ +++ R G K R+EV ++ K QKGTGRAR S + Sbjct: 2 FAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHSTKKPSRQKGTGRARSGMTSSPLW 61 Query: 84 RGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142 R GG+AF P + +K+ + LS + I+ L ++ KTK + Sbjct: 62 RKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQ 121 Query: 143 FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + L L L + QLD N LA+RN+PN+ +L Q ++ Y +LR K++++K A+ L Sbjct: 122 VKNLGLEQVLFVT-KQLDENVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQL 180 Query: 203 EDRF 206 E+++ Sbjct: 181 EEQW 184 >gi|255326843|ref|ZP_05367919.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC 25296] gi|283457544|ref|YP_003362127.1| 50S ribosomal protein L4 [Rothia mucilaginosa DY-18] gi|255296060|gb|EET75401.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC 25296] gi|283133542|dbj|BAI64307.1| ribosomal protein L4 [Rothia mucilaginosa DY-18] Length = 205 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 1/182 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + +IF + +L +V+ Q R G K+K R EV+ G K + QKGTG AR Sbjct: 7 KVDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQ 66 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134 S GGG GP P PKK+ + ALR ALSD+ + + V++N +S + Sbjct: 67 GSIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRVHVVENFISGETP 126 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK F A+ +++ + + L+ARN+ N+++L +N YD+L +V Sbjct: 127 STKAAKAAFAAITERKNILLVIARAEDVVALSARNLENVHVLYADQLNTYDVLVSDDVVF 186 Query: 195 SK 196 +K Sbjct: 187 TK 188 >gi|86605865|ref|YP_474628.1| 50S ribosomal protein L4 [Synechococcus sp. JA-3-3Ab] gi|109893645|sp|Q2JV82|RL4_SYNJA RecName: Full=50S ribosomal protein L4 gi|86554407|gb|ABC99365.1| ribosomal protein L4 [Synechococcus sp. JA-3-3Ab] Length = 326 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V+N GE G +S + + IL LR Q R G + +K R+EV Sbjct: 1 MASCVVKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S +R GG FGP A+ +K R LALR AL + Sbjct: 61 GRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRV-- 118 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+++ KT+ + + +AL+I + + A RNI + L Sbjct: 119 EDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIV-AERSEAVERAVRNIARVKL 177 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + +NV+D+L ++++ SA+E L+ R+ Sbjct: 178 IGLDQLNVFDLLNVDWVLITTSALEKLKARW 208 >gi|114675331|ref|XP_001163881.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 1 [Pan troglodytes] Length = 274 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 79 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 138 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 139 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 198 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 199 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 258 >gi|325981806|ref|YP_004294208.1| 50S ribosomal protein L4/L1e [Nitrosomonas sp. AL212] gi|325531325|gb|ADZ26046.1| ribosomal protein L4/L1e [Nitrosomonas sp. AL212] Length = 206 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + + + I VS+++F + ++ +V+ R KGRS++A + Sbjct: 1 MKIELIGNEDQKTASIIVSDELFMRNYNEALVHQVVTSYLSNARTATRAQKGRSDIAKST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +RGGGK F L KK+ + LS Sbjct: 61 RKPWRQKGTGRARAGMASSPIWRGGGKIFPNSSGENFRKKLNKKMYRAGISSILSQLIRD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N + VI++ KTK L+ + L LSN +II ++D N L++ NIPN+ ++ V Sbjct: 121 NRLHVIESFCVDSYKTKALLMKLENLGLSNVMIITD-EIDNNLYLSSCNIPNVAVVEVNN 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 I+ +L+ K +++ ++ +E+ Sbjct: 180 IDPISLLKFKKTLVTSDGLKKIEELL 205 >gi|90994503|ref|YP_536993.1| ribosomal protein L4 [Porphyra yezoensis] gi|109893086|sp|Q1XDH5|RK4_PORYE RecName: Full=50S ribosomal protein L4, chloroplastic gi|90819067|dbj|BAE92436.1| 50S ribosomal protein L4 [Porphyra yezoensis] Length = 214 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N +G+ G ++ + + ++ R L QS KR G + +K RSEV G K + Sbjct: 11 VYNWEGQVSGNADLNLKV-SQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPW 69 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +RGGG FGP P + KK R LALR AL++K S + ++ Sbjct: 70 RQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNK--SVNTLI 127 Query: 126 IDNLV--SKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++N + KTK + LDL+ +++ + D N L+ RN+ N+ L+ + Sbjct: 128 VENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTL 187 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N+ +L K++++ A+ +++ + Sbjct: 188 NIMALLAAHKIIITVDALSKIQEVY 212 >gi|328875550|gb|EGG23914.1| hypothetical protein DFA_06052 [Dictyostelium fasciculatum] Length = 333 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 3/202 (1%) Query: 6 VRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V + + + G I++ +F + + +L R++RWQ + R G ++ +V T K Sbjct: 111 VIDFNSKQVVGEINLLNSVFKVPLRIDLLHRMIRWQRAKARQGTHYAQNMGDVERTNKKP 170 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 QKG GRAR + Q GG +AF P P H+L KKVR AL ALS K ++ Sbjct: 171 MAQKGNGRARQGTNHAIQMVGGARAFPPKPRDHSHSLQKKVRKQALCVALSTKLAQGKLI 230 Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 ++D+L + KTK LV +L++ + NF LAA NI NI+L+P +GINVY Sbjct: 231 IVDDLQVETHKTKELVQLLPEA-WGRSLLV-NNEFSNNFNLAAYNIINIDLVPDRGINVY 288 Query: 185 DILRCSKLVLSKSAIEALEDRF 206 IL+ LV+SK +IE L+ R Sbjct: 289 SILQKDTLVISKKSIEILQARL 310 >gi|290984683|ref|XP_002675056.1| ribosomal protein L4/L1e [Naegleria gruberi] gi|284088650|gb|EFC42312.1| ribosomal protein L4/L1e [Naegleria gruberi] Length = 332 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 13/218 (5%) Query: 2 IELSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 E V+NL GE +I++ F P++ IL +++WQ ++R G K+K R E AY Sbjct: 106 PEAMVKNLKTGEFTEMINLHPYFFNCTPRKDILYLMVKWQLAKRRQGTHKTKYRLETAYC 165 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG G ARHS + Q+RGGG A P + L KK+R LALR AL+ K+ Sbjct: 166 KQKQTPQKGRGAARHSDRGAPQYRGGGHAMALRPRSYEYNLNKKIRRLALRMALTTKYQQ 225 Query: 121 NDIMVIDNLVSKECKTKYLVTRF------------RALDLSNALIIDGCQLDRNFQLAAR 168 ++++D+ KTKY+ + + L+IDG Q++ NF+ Sbjct: 226 GKLIIVDDFSIDTFKTKYVAGLISNTVFPDSETHEKEIKDRGVLLIDGEQVNANFERGVF 285 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N+ + L + G+NVYD+LR K+V+SKS +E L ++ Sbjct: 286 NLHYADYLSIDGLNVYDMLRREKVVISKSGLETLTKKY 323 >gi|11465779|ref|NP_053923.1| ribosomal protein L4 [Porphyra purpurea] gi|1710475|sp|P51313|RK4_PORPU RecName: Full=50S ribosomal protein L4, chloroplastic gi|1276779|gb|AAC08199.1| 50S ribosomal protein L4 [Porphyra purpurea] Length = 214 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 V N +G+ G ++ I + ++ R L QS KR G + +K RSEV G K + Sbjct: 11 VYNWEGQVSGNADLNLKI-SKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPW 69 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +RGGG FGP P + KK LALR AL++K S + +V Sbjct: 70 RQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNK--SVNTLV 127 Query: 126 IDNLV--SKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++N ++ KTK + LDL+ L++ + D N L+ RN+ N+ ++ + Sbjct: 128 VENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTL 187 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N+ +L K++++ A+ +++ + Sbjct: 188 NIMALLAAHKVIITVDALSKIQEVY 212 >gi|55648223|ref|XP_512362.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 6 [Pan troglodytes] gi|114675325|ref|XP_001163982.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 3 [Pan troglodytes] gi|114675327|ref|XP_001164017.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 4 [Pan troglodytes] gi|114675329|ref|XP_001164062.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 5 [Pan troglodytes] Length = 263 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 >gi|22547140|ref|NP_666500.1| 39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens] gi|12653925|gb|AAH00756.1| Mitochondrial ribosomal protein L4 [Homo sapiens] gi|119604491|gb|EAW84085.1| mitochondrial ribosomal protein L4, isoform CRA_b [Homo sapiens] Length = 263 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180 ++D+L +YL + +R S L+ + ++ ++ A + NL+P G Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247 >gi|289209328|ref|YP_003461394.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix] gi|288944959|gb|ADC72658.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix] Length = 201 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 1/191 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + +S F + ++ + + +R G K RS+V+ G+K + QKGTGRAR Sbjct: 11 SVELSPVCFERDFNESLVHQSVVAFLAGQRQGTRAQKTRSDVSGGGAKPFRQKGTGRARA 70 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 + + GGGK F L KK+ A+ LS+ + V+ + K Sbjct: 71 GTIRSPLWTGGGKVFAARTRDFSQKLNKKMYRAAMASILSELVRQERLKVVADFAVASGK 130 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 T+ V + + L L+ L++ + D A N+P+I+++ V GIN +++ +V++ Sbjct: 131 TRDGVAKLKELGLAKGLVVL-AEADDMTARALGNVPHIDVVDVAGINPANLVGAETVVMT 189 Query: 196 KSAIEALEDRF 206 ++AI +E+ Sbjct: 190 EAAIRKVEEWL 200 >gi|94985966|ref|YP_605330.1| 50S ribosomal protein L4 [Deinococcus geothermalis DSM 11300] gi|166234661|sp|Q1IX73|RL4_DEIGD RecName: Full=50S ribosomal protein L4 gi|94556247|gb|ABF46161.1| ribosomal protein L4 [Deinococcus geothermalis DSM 11300] Length = 213 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 7/204 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V +G + + + +L V+ WQ +R G + +K R+EV+ + Sbjct: 1 MAQINVIGQNGGRSIDLDLP------EVNPHVLHEVVTWQLAGRRRGTASTKTRAEVSRS 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH +SV F GGG AFGP P + LP+KVR L L AL+D+ Sbjct: 55 GKKMYSQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYSYTLPRKVRQLGLAMALADRQQQ 114 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + +D KTK V+ + L + + D + AARN+ +LPV G Sbjct: 115 GKLTAVDGFGLD-GKTKSFVSWAKENGLDGSERVLIVTDDELTRRAARNVAWATVLPVAG 173 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +NVYDILR +LV+ A+E ++ Sbjct: 174 LNVYDILRHERLVIDAVALEPAQE 197 >gi|153872676|ref|ZP_02001497.1| ribosomal protein L4/L1e [Beggiatoa sp. PS] gi|152070857|gb|EDN68502.1| ribosomal protein L4/L1e [Beggiatoa sp. PS] Length = 218 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 14/218 (6%) Query: 2 IELSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 +EL++ NL E G+ ISVS+ +F + ++ + + K R++V Sbjct: 1 MELTLTNLPDETSGLGSVISVSDRVFTAPFNEPLIHQAVTAYLLGSYQSQKSVKNRAQVR 60 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 + +K + QKGTGRAR S +RGGG F P L +K+ ALR LS+ Sbjct: 61 GSTAKPWRQKGTGRARAGSVKSPLWRGGGVTFAH-PSSHAVKLNRKMYQGALRSILSELI 119 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN----------FQLAAR 168 ++V + + KT L AL+L LI+ + A+ Sbjct: 120 RQERLLVTERFFLEAPKTSVLKKTLNALNLDKVLIVLEGRTSSVNGEIAPEVMAVFRASD 179 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N+P + +L I+ ++R K++ + +A++ LE+R Sbjct: 180 NLPKVLVLEASKIDPVSLVRFDKVIFTTAALKQLEERL 217 >gi|168037394|ref|XP_001771189.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677569|gb|EDQ64038.1| predicted protein [Physcomitrella patens subsp. patens] Length = 235 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 8/210 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L + +GE G + + + + ++ R + + +R G + + RSEV G Sbjct: 11 VTLPMLTFEGEAAGEVEMDLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRGGG 70 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S GGG FGP P + KK + LA+ AL S Sbjct: 71 RKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAISTALQS--ASV 128 Query: 122 DIMVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLL 176 + +V+++ KTK ++ + + N+L+ + L++RN+ + L+ Sbjct: 129 NTVVVEDFEDKFTTPKTKEFISALKRWGVKQGENSLLF-SVNPSESLVLSSRNVSTVKLI 187 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YD+LR KL+L+KS++E LE + Sbjct: 188 TPRNLNLYDVLRADKLILTKSSVEYLEQMY 217 >gi|319942174|ref|ZP_08016490.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B] gi|319804227|gb|EFW01119.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B] Length = 206 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 6/208 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL+V N G+ + ++ +F + + ++ +++ R+G R +V ++ Sbjct: 1 MELNVLNEQGK---TVEAADAVFGREYNEALVHQIVVAFQANARLGTRAQLNRRDVHHST 57 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S +R GG+AF P L KK+ + S Sbjct: 58 KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNTPDENFSQKLNKKMFRAGMASIYSKLVAD 117 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +V++ + + KTK ++ + L L +I+D +LD N LA+RN+ ++ ++ Sbjct: 118 ARFVVVETIKADLPKTKAFASQLKTLGLTARTLIIVDESELDDNLILASRNLKDVLVVTP 177 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + ++ K+V +K+A+ +++ Sbjct: 178 RFADPLCLIYFDKVVATKAAVAQIQEML 205 >gi|297567283|ref|YP_003686255.1| 50S ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946] gi|296851732|gb|ADH64747.1| ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946] Length = 211 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 8/208 (3%) Query: 1 MIELSVRNLDGEDKGVIS--VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ LSV + G+ + + + +L V++WQ ++R G + +K R V Sbjct: 1 MVTLSVLSAKGQKARDLEATLP------EVNPHVLYEVVKWQMAKRRAGTAATKTRGMVN 54 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 +T KMY QK TGRARH F GGG FGP P + LPKKVR L L AL+D+ Sbjct: 55 FTTKKMYSQKHTGRARHGDYGAPIFVGGGTVFGPQPRDYSYTLPKKVRKLGLAMALADRA 114 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +++ + KTK + L + + + + AARN+P + L Sbjct: 115 KDGKLLIAEGFEGVNGKTKEFLAWATGAGLDGSQTVLLVTANELVRRAARNLPWVRTLAP 174 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDILR LVL A EA + R Sbjct: 175 EGLNVYDILRQEWLVLDMPAWEAAQARL 202 >gi|325108616|ref|YP_004269684.1| 50S ribosomal protein L4P [Planctomyces brasiliensis DSM 5305] gi|324968884|gb|ADY59662.1| LSU ribosomal protein L4P [Planctomyces brasiliensis DSM 5305] Length = 217 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI + V N G + G A + +L V+ +R+G +K R++VA + Sbjct: 1 MISVPVYNQQGSEVGTYEFDPTELASGVNKQLLHDVVVMYEANRRVGTFATKSRADVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR K RGGG F P + LPKK LA R A+ KF Sbjct: 61 KKKMYRQKGTGNARAGGKRSPIRRGGGHTFAKTPRDFSYRLPKKAIRLATRMAVLSKFQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I VID++ E KTK + F L + + ++ D N +ARN+ + + P Sbjct: 121 DQIKVIDDVKFSEPKTKQVTGMFSQLGVEPSKTLLAIDAHDTNVWKSARNVAGLRVTPSV 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 G+N YD+L LV++ SA++ L Sbjct: 181 GLNAYDVLHQRMLVVTTSALDRL 203 >gi|325972660|ref|YP_004248851.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy] gi|324027898|gb|ADY14657.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy] Length = 209 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 1/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V ++DG + I +++ +F + G + + + +R+G + +K R+EV Y+ Sbjct: 1 METKVFSIDGSEVRSIELNDQVFNREVSDGSIYYAVNNELANRRVGTACTKTRAEVHYSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR K + GGG FGP P + LPKK++ LA++ LS Sbjct: 61 VKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYTLPKKMKRLAMKSLLSLGVKEE 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++ KTK L + I+ D + AA+NIP + +L Sbjct: 121 RLVVVEDFSIDSGKTKDLDLIIKNFVKDETRTILILKDDDVMVRRAAKNIPYLRVLSYNR 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++L KL++ + A + L D + Sbjct: 181 LSAKELLYGRKLLVLEGAAKNLNDFY 206 >gi|219684271|ref|ZP_03539215.1| 50S ribosomal protein L4 [Borrelia garinii PBr] gi|219672260|gb|EED29313.1| 50S ribosomal protein L4 [Borrelia garinii PBr] Length = 209 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|71891976|ref|YP_277706.1| 50S ribosomal protein L4 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|109893577|sp|Q493K7|RL4_BLOPB RecName: Full=50S ribosomal protein L4 gi|71796082|gb|AAZ40833.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 210 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 4/209 (1%) Query: 2 IELSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 +EL VR+ E D SVS++IF Q ++ +V+ R G K RSEV Sbjct: 1 MELEVRDFTTEINILDSEKFSVSDEIFKCPFNQALIHQVISTYLTNSRQGTRSQKSRSEV 60 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 + + K + QKGTGRAR S +R GG F P + + KK+ A+R LS Sbjct: 61 SGSNKKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPKLYAQKINKKMYRGAIRSILSKL 120 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 C N + ++ NL KE KTK L+ + R + +++I LD+N LA+RN+ I + Sbjct: 121 VCDNRLFLVRNLFIKEPKTKLLLEKLRTITSKKSILIFTDFLDKNLLLASRNVHKIEVRT 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+ ++ + +++ + I+ +E + Sbjct: 181 ATHIDPVSLINFNVTLIADNVIKKIEKQL 209 >gi|330795906|ref|XP_003286011.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum] gi|325084009|gb|EGC37447.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum] Length = 258 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 2 IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 IE + + D + + G I +S+DIF+ + +L R++R+Q + + G ++ + Sbjct: 46 IEFPIIDFDSKSNVGTIQLSKDIFSRPLRIDLLHRMVRYQRAKSQQGTHQALNMERKTSS 105 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR + Q +GG +AF P H LPKKVR L L+ ALS K Sbjct: 106 NKKPFKQKGTGRARQGTNHAVQMKGGARAFPPTSRSHAHDLPKKVRQLCLKVALSSKLAQ 165 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 N +++ID KTK LV++ + +L++D + N ++ N+ I+ LP +G Sbjct: 166 NKLIIIDEFKLSSHKTKDLVSKLPQ-EWGRSLLVD-KDISENLNRSSLNVQKIDTLPERG 223 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +NVY IL+ LVL++S+IEAL+ R Sbjct: 224 LNVYSILQNDTLVLTRSSIEALQSRL 249 >gi|51598733|ref|YP_072921.1| 50S ribosomal protein L4 [Borrelia garinii PBi] gi|81609968|sp|Q661E2|RL4_BORGA RecName: Full=50S ribosomal protein L4 gi|51573304|gb|AAU07329.1| ribosomal protein L4 [Borrelia garinii PBi] Length = 209 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|219685255|ref|ZP_03540075.1| 50S ribosomal protein L4 [Borrelia garinii Far04] gi|219673351|gb|EED30370.1| 50S ribosomal protein L4 [Borrelia garinii Far04] Length = 209 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ V++N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SAI L + + Sbjct: 181 KLRVVDLFYAKNLIALESAINKLNEFY 207 >gi|62296686|sp|P49665|RL4_THETH RecName: Full=50S ribosomal protein L4 gi|12056100|emb|CAC21224.1| ribosomal protein L4 [Thermus thermophilus] Length = 210 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 11/206 (5%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V + G + + + +L V+RWQ ++R G + +K R EVAY+G Sbjct: 8 QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+ Sbjct: 63 KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ E + + + + L + L++ G + + AARN+P + L + Sbjct: 123 LLLVEAFAGVERQDQAIPAWAKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPE 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 G+NVYDI+R +LV+ A E ++R Sbjct: 180 GLNVYDIVRTERLVMDLDAWEVFQNR 205 >gi|256371216|ref|YP_003109040.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331] gi|256007800|gb|ACU53367.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331] Length = 214 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V + G + ++FA P +L +V+ + R G +K R+EVA Sbjct: 1 MASAKVIDATGRTLREEELPGEVFAHAPNIALLHQVVVAEQAGARRGTHSTKTRAEVAGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K Y QKGTG AR S Q++GGG GP P P+K+ AL ALSD+ + Sbjct: 61 GAKPYRQKGTGNARQGSIRAPQYKGGGIVHGPKPRDYSQRTPRKMLRAALAQALSDRASA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I V+++ V TK + R L L + D + RN+P + + Sbjct: 121 GVIYVLEDDVITAPSTKAALACLRGAGLEDRKVLALVAGATDEAVFKSVRNLPTVRVHRA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + V +L ++ +++A+ L Sbjct: 181 GLVLVSAVLASDAVLFTRAALAEL 204 >gi|324510849|gb|ADY44533.1| 39S ribosomal protein L4 [Ascaris suum] Length = 298 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 S+ +++ + G+I + ++F P+ IL R + WQ + + +K + E+ G K Sbjct: 67 CSLNSVEEKRSGIIDLHPEVFRCTPRIDILHRNVTWQLVYRNVQFTKQLSKGEMPGGGRK 126 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSND 122 + QK TGRA S QF GG A G P + LP +R L AL+ K ND Sbjct: 127 PWPQKKTGRAHAGSIRSPQFYAGGFANGVRGPRTWFYMLPDAIRLQGLCVALTIKHAQND 186 Query: 123 IMVIDNLVS---KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D+ S E + + + R S + + ++ N A IP+ N++PV Sbjct: 187 LVVVDDFGSLPNAEPQYLHDLADARNWGYSVLFVTESSEVPSNLADACDGIPSFNIMPVY 246 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 G+N Y I++ +VL + A+E LE R Sbjct: 247 GLNCYSIMKYETIVLCRLALEILEYR 272 >gi|282933637|ref|ZP_06339002.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] gi|281302242|gb|EFA94479.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] Length = 158 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 86/158 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+KVR LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158 N+++++D L KTK L++ + +++ Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDN 158 >gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966454|pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966507|pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966560|pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400 Length = 198 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++V +G + + + G+L V+ WQ +R G + ++ R++V+ TG Sbjct: 2 AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ + Sbjct: 56 RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ +D + KTK ++ + L + D N + AARN+ +++LPV G+ Sbjct: 116 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 175 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 NVYDILR +LV+ +A+E +E+ Sbjct: 176 NVYDILRHDRLVIDAAALEIVEE 198 >gi|302697703|ref|XP_003038530.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8] gi|300112227|gb|EFJ03628.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8] Length = 251 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 1/190 (0%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 + +F ++ IL + R G + +K R+EV + K+ QKGTG AR Sbjct: 20 LHPSVFNHPIRRDILHLCVVHYRDSLRQGSANTKNRAEVRGSTRKIMRQKGTGNARVGDA 79 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 RGGG FGP P LP+KV + +R ALS K + ++ L E KT+ Sbjct: 80 QSPIRRGGGVVFGPKPRDFSTKLPRKVIEMGMRVALSAKVKEQNFGIMRRLEWPEGKTRT 139 Query: 139 LVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 L R L L L + G + L + A RNIP + L+ +NVY+ L+ ++V Sbjct: 140 LAERIETLGLRKTLFVTGSEQLPETLERAFRNIPMVKLVHASELNVYETLKWPRIVADLD 199 Query: 198 AIEALEDRFK 207 A++ E+ K Sbjct: 200 AVKYFEESLK 209 >gi|282934052|ref|ZP_06339334.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] gi|281301884|gb|EFA94146.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1] Length = 158 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 85/158 (53%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G+D G +++++++F ++P + ++ + Q R G +K RS V Sbjct: 1 MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P ++LP+K R LA++ LS K Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158 N+++V+D L KTK L++ + +++ Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDN 158 >gi|110180288|gb|ABG54387.1| 23S ribosomal protein L4 [Brucella ceti] Length = 176 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 99/206 (48%), Positives = 134/206 (65%), Gaps = 30/206 (14%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ L+G+D G + ++E+IF L P+ IL RV+RWQ R++ G K++GR Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGR------- 53 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 GGG+A GPV H LPKKV +L LRHALS K ++ Sbjct: 54 -----------------------GGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 90 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+++ID+L S + KTK LV++F L L NAL+I G ++D NFQ AA NIPNI++LPVQGI Sbjct: 91 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 150 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 NVYDILR KLVLSK+A+EALE+RFK Sbjct: 151 NVYDILRRGKLVLSKAAVEALEERFK 176 >gi|124026707|ref|YP_001015822.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A] gi|123961775|gb|ABM76558.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A] Length = 212 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S+ +L R + Q R G + + RSEV Sbjct: 2 MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 61 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 62 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRISD 121 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+ + KT +V + + + + ++I + + + +N+ + L+ Sbjct: 122 AKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISA 181 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 182 DQLNVFDLLNANSLVIGEDALSTIKEVY 209 >gi|34811556|pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. gi|34811609|pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx Length = 197 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++V +G + + + G+L V+ WQ +R G + ++ R++V+ TG Sbjct: 1 AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 54 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ + Sbjct: 55 RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 114 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ +D + KTK ++ + L + D N + AARN+ +++LPV G+ Sbjct: 115 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 174 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 NVYDILR +LV+ +A+E +E+ Sbjct: 175 NVYDILRHDRLVIDAAALEIVEE 197 >gi|268554728|ref|XP_002635351.1| Hypothetical protein CBG01522 [Caenorhabditis briggsae] gi|187038160|emb|CAP22734.1| hypothetical protein CBG_01522 [Caenorhabditis briggsae AF16] Length = 294 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ ++ E G++ + DIF P+ IL R L WQS + + +K ++E+ G K Sbjct: 50 SLETVEDEKLGLVDLHPDIFRTTPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 109 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP +R L AL+ K +D+ Sbjct: 110 WPQKKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAIRIQGLCVALTLKHAQDDL 169 Query: 124 MVIDNL-VSKECKTKYLVTRFRALDLS-NALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 ++DN+ + K+ + A + + L ID ++ A + +P +N++PV G Sbjct: 170 HIVDNIQNLQNGDPKFWIDLCEARNYGYSVLFIDDCDEVSGGLAEAQQALPWLNVMPVYG 229 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N + +++ +VLS++A++ +E+R Sbjct: 230 LNCFSLIKYDTVVLSRNALDRIEERL 255 >gi|206602676|gb|EDZ39157.1| Ribosomal protein L4 [Leptospirillum sp. Group II '5-way CG'] Length = 218 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 8/208 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK---PQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 +++ + L GE + ++ I A + +L +++ Q R G + +K R EV+ Sbjct: 1 MDIQMVTLKGETPKSLEIN--ISAEEAELINVPLLHEIIQMQRAGIRSGTASTKTRGEVS 58 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K Y QKGTGRAR S Q+RGG FGP P + P K LA+++A+ Sbjct: 59 GGGKKPYRQKGTGRARQGSTRAPQWRGGAIIFGPRPRDYFYRQPAKKIVLAVKNAIFSHL 118 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINL 175 + + ++D+L KTK L+ F L ++I L N + RNIP + + Sbjct: 119 ENKSLYLVDSLDIPSRKTKDLIALFNKWSLFPGEERILIIDNGLSENIYYSCRNIPGLEI 178 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALE 203 L +N YD+L K+++SK A E + Sbjct: 179 LLPHQVNPYDLLIADKVLVSKEAFENMN 206 >gi|72382966|ref|YP_292321.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL2A] gi|109893619|sp|Q46IR0|RL4_PROMT RecName: Full=50S ribosomal protein L4 gi|72002816|gb|AAZ58618.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. NATL2A] Length = 211 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +V + G++ G S+ +L R + Q R G + + RSEV Sbjct: 1 MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S GGG FGP P + +K R LALR AL + Sbjct: 61 GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIPD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178 I+ + KT +V + + + + ++I + + + +N+ + L+ Sbjct: 121 AKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV+D+L + LV+ + A+ +++ + Sbjct: 181 DQLNVFDLLNANSLVIGEDALSTIKEVY 208 >gi|168004892|ref|XP_001755145.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693738|gb|EDQ80089.1| predicted protein [Physcomitrella patens subsp. patens] Length = 240 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + L V L+G G + + + + ++ R L + +R G + + RSEV G Sbjct: 3 VTLPVLTLEGGAAGEVEMDLRTARPETAKSVVHRGLICEMQNRRRGTASTLTRSEVRGGG 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S GGG FGP P + KK + LA+ AL S Sbjct: 63 RKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKQLAISTALQS--ASA 120 Query: 122 DIMVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLL 176 + +V+++ KTK + + N+L+ D + L++RN+ L+ Sbjct: 121 NTVVVEDFEEKFTAPKTKEFIAALMRWGVKPGENSLLFSMNPSD-SLVLSSRNVSTCKLM 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YD+LR KL+L+KSA+E LE ++ Sbjct: 180 TPRSLNLYDVLRADKLILTKSAVEYLEQQY 209 >gi|291296990|ref|YP_003508388.1| 50S ribosomal protein L4/L1e [Meiothermus ruber DSM 1279] gi|290471949|gb|ADD29368.1| ribosomal protein L4/L1e [Meiothermus ruber DSM 1279] Length = 206 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V ++ E + + +L V+RWQ +R G + +K R V +T Sbjct: 1 MYNLPVLG--SNKTVEAALPEKV-----KSHVLYEVVRWQLASRRRGTAATKTRGMVNFT 53 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QK TGRARH F GGG FGP P + LPKKVR L L AL+D+ Sbjct: 54 TKKMYAQKHTGRARHGDYGAPIFVGGGTVFGPQPRDYSYTLPKKVRKLGLAMALADRAKE 113 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++++ KTK V +A +L + L++ D AARN+P + +L Sbjct: 114 GKFFLVEDFKGVNGKTKEFVAWLKAHNLEGPSILLVTS---DEKVARAARNLPKVRVLAP 170 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDI+R LV+ SA E ++ + Sbjct: 171 EGLNVYDIMRQEALVMEASAWEGVQAKL 198 >gi|313680514|ref|YP_004058253.1| LSU ribosomal protein l4p [Oceanithermus profundus DSM 14977] gi|313153229|gb|ADR37080.1| LSU ribosomal protein L4P [Oceanithermus profundus DSM 14977] Length = 208 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 6/192 (3%) Query: 1 MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M ++ V G+ + + E++ +L V+RWQ +R G + +K R EV+Y Sbjct: 1 MYKVPVIPAKGKATSRELPLPEEV-----NPHVLYEVVRWQLASRRRGTASTKTRGEVSY 55 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K++ QKG GRARH S+ + F GGG FGP P + LP+KVR L AL+D+ Sbjct: 56 STRKLFPQKGLGRARHGSRGANIFVGGGVVFGPRPRDYGYTLPRKVRRAGLAMALADRAR 115 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ E KTK V L + + D N + AARN+P + L + Sbjct: 116 EEKLLIVEAFAGVEGKTKQFVEWASKHGLDGSERVTLVTADENVRRAARNLPWVVTLSPE 175 Query: 180 GINVYDILRCSK 191 GINVYDILR + Sbjct: 176 GINVYDILRTDR 187 >gi|218249414|ref|YP_002374989.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7] gi|224532481|ref|ZP_03673106.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23] gi|226321789|ref|ZP_03797315.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26] gi|226730622|sp|B7J244|RL4_BORBZ RecName: Full=50S ribosomal protein L4 gi|218164602|gb|ACK74663.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7] gi|224512553|gb|EEF82929.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23] gi|226232978|gb|EEH31731.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26] Length = 209 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|281358744|ref|ZP_06245220.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548] gi|281314771|gb|EFA98808.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548] Length = 209 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 1/205 (0%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L + + G G + E + L+ + + + +R G + +K R EV+ G+ Sbjct: 4 TLDILDCKGARVGEYVIPEGVIELEKGEQAVHDTVVAYLAGQRAGTACTKTRGEVSGGGA 63 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKG GRAR S + GGG FGP P + KKV LAL+ ALS++ D Sbjct: 64 KPFRQKGMGRARAGSSRSPVWVGGGTIFGPRPRSFAKKVNKKVLQLALKRALSERIVEGD 123 Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++D + KT+ + L+++N ++I +LD A NIPN+ L + Sbjct: 124 LVLLDKFELADHKTRNAFAILKNLNVANETVMISLPELDAASVCATGNIPNVVLRKTDTV 183 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 NVY++LR KL+ +K A++A R Sbjct: 184 NVYELLRFKKLLFTKDALDAFIQRL 208 >gi|15594824|ref|NP_212613.1| 50S ribosomal protein L4 [Borrelia burgdorferi B31] gi|195941616|ref|ZP_03086998.1| 50S ribosomal protein L4 [Borrelia burgdorferi 80a] gi|216264894|ref|ZP_03436886.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a] gi|221218083|ref|ZP_03589549.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a] gi|223888691|ref|ZP_03623282.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b] gi|224533597|ref|ZP_03674186.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a] gi|225548627|ref|ZP_03769674.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a] gi|225549551|ref|ZP_03770517.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a] gi|225552234|ref|ZP_03773174.1| 50S ribosomal protein L4 [Borrelia sp. SV1] gi|226321111|ref|ZP_03796653.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805] gi|3915828|sp|P94268|RL4_BORBU RecName: Full=50S ribosomal protein L4 gi|2688412|gb|AAC66863.1| ribosomal protein L4 (rplD) [Borrelia burgdorferi B31] gi|215981367|gb|EEC22174.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a] gi|221192031|gb|EEE18252.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a] gi|223885507|gb|EEF56606.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b] gi|224513270|gb|EEF83632.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a] gi|225369828|gb|EEG99275.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a] gi|225370657|gb|EEH00093.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a] gi|225371232|gb|EEH00662.1| 50S ribosomal protein L4 [Borrelia sp. SV1] gi|226233521|gb|EEH32260.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805] gi|312148420|gb|ADQ31079.1| ribosomal protein L4/L1 family [Borrelia burgdorferi JD1] gi|312149445|gb|ADQ29516.1| 50S ribosomal protein L4 [Borrelia burgdorferi N40] Length = 209 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFNVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|224534698|ref|ZP_03675270.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S] gi|224513946|gb|EEF84268.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S] Length = 209 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G +++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTVNLDDRVFNIEVSHGSIYNAIKSELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWVGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 122 -DIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 V++N + KTK L + + +++ D+ + A +NI ++ +L Sbjct: 121 SSFKVVENFNIESGKTKDLALIIKNFVSFNGKVVVLLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|15805341|ref|NP_294035.1| 50S ribosomal protein L4 [Deinococcus radiodurans R1] gi|45477175|sp|Q9RXK1|RL4_DEIRA RecName: Full=50S ribosomal protein L4 gi|16975049|pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975053|pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975057|pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|16975065|pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|20150343|pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria gi|28948922|pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans gi|51247375|pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Quinupristin And Dalfopristin gi|190613492|pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large Ribosomal Subunit Of Deinococcus Radiodurans gi|190613522|pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit gi|190613553|pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit (50s) From Deinococcus Radiodurans gi|190613660|pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large Ribosomal Subunit Of Deinococcus Radiodurans gi|203282459|pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal Peptidyl-Transferase Center And Effect Trna Positioning gi|323714543|pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair Lankamycin And Lankacidin In Complex With The Large Ribosomal Subunit gi|323714573|pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair Lankamycin And Lankacidin In Complex With The Large Ribosomal Subunit gi|6457986|gb|AAF09893.1|AE001892_4 ribosomal protein L4 [Deinococcus radiodurans R1] Length = 205 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V +G + + + G+L V+ WQ +R G + ++ R++V+ T Sbjct: 1 MAQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKT 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ + Sbjct: 55 GRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEG 114 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ +D + KTK ++ + L + D N + AARN+ +++LPV G Sbjct: 115 GKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAG 174 Query: 181 INVYDILRCSKLVLSKSAI 199 +NVYDILR +LV+ +A+ Sbjct: 175 VNVYDILRHDRLVIDAAAL 193 >gi|17564584|ref|NP_505181.1| hypothetical protein T23B12.2 [Caenorhabditis elegans] gi|2384911|gb|AAB69933.1| Hypothetical protein T23B12.2 [Caenorhabditis elegans] Length = 299 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 4/206 (1%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ ++ E G++ + DIF P+ IL R L WQS + + +K ++E+ G K Sbjct: 55 NLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 114 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP VR L AL+ K +D+ Sbjct: 115 WPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHTQDDL 174 Query: 124 MVIDNL-VSKECKTKYLVTRFRALDLS-NALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180 ++D + + KY + A + + L +D ++ A + +P +N++PV G Sbjct: 175 HIVDKIQNLQNGDPKYWIDLCEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPVYG 234 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N + +++ +VLS+SA+E +E+R Sbjct: 235 LNCFSLMKYDTIVLSRSALERVEERL 260 >gi|224532312|ref|ZP_03672944.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116] gi|224511777|gb|EEF82183.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116] Length = 209 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVKGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + L+ ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASLNGKVVILLGNDDQMIKRAGKNIRDLKVLSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|320335522|ref|YP_004172233.1| 50S ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211] gi|319756811|gb|ADV68568.1| ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211] Length = 201 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 7/200 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +G + + + +L V+ WQ ++R G + +K R++V+ Sbjct: 1 MAQIKVIGQNGGRNIDVDLP------EVNTHVLHEVVSWQLAKRRQGSASTKTRAQVSRG 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH +SV F GGG AFGP P + LPKKVR L L AL+D+ Sbjct: 55 GKKMYSQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYAYTLPKKVRQLGLAMALADRQAQ 114 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++ +D KTK V + + + + D + AARN+ + LPV G Sbjct: 115 DKLLAVDGFGLD-GKTKSFVAWAKENGMDGSERVFLVTDDEATRRAARNLSWVTALPVAG 173 Query: 181 INVYDILRCSKLVLSKSAIE 200 +NVYDILR +L++ A+E Sbjct: 174 LNVYDILRHERLIIDAIALE 193 >gi|240980762|ref|XP_002403536.1| ribosomal protein L4, putative [Ixodes scapularis] gi|215491369|gb|EEC01010.1| ribosomal protein L4, putative [Ixodes scapularis] Length = 295 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 11/208 (5%) Query: 3 ELSVRNLD---GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E V NLD E G++ + IFA P+ L + WQ +R+ + ++ R+E Sbjct: 73 EAWVENLDTVESEKLGLVPLHPKIFAGFPRIDTLHWNIHWQKNYQRVDWATAQTRAERRG 132 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRARH S Q++GGG + GP P + LP R L ALS KF Sbjct: 133 GGRKPWPQKGTGRARHGSIRAPQWKGGGVSMGPRGPRTYFYMLPFFRRVEGLITALSVKF 192 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + ++ T + + +N +A I ++N++PV Sbjct: 193 AQ-----VTEMLCTFLCTSRATSHSSRFGWHC--FRSTDYVPKNIAVACDQIKHMNIMPV 245 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+ +L+ LVL+ SA E +E + Sbjct: 246 YGLNVHSMLKYDTLVLTLSAAEEIEAKL 273 >gi|168702385|ref|ZP_02734662.1| 50S ribosomal protein L4 [Gemmata obscuriglobus UQM 2246] Length = 235 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 19/219 (8%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V N G + G + ++ F K + ++ V+ +R G + R +VA + Sbjct: 9 KVPVVNRSGAEVGTVDINPSEFGGKISRQLMHDVVLMYLANQRAGTHHTLRRGQVAGSTK 68 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K++ QKGTG AR +K ++ RGGG A GP P + LPKK A R A+ KF Sbjct: 69 KLFRQKGTGNARAGTKRTNKRRGGGTAKGPKPRDYEYHLPKKSVKAATRMAILSKFLDGQ 128 Query: 123 IMVIDNLVSKECKTKYLVTRF----------------RALDL---SNALIIDGCQLDRNF 163 ++++D KTK +V + ++L ++I +LD N Sbjct: 129 VVILDEFALAAPKTKEVVGVLKAIKIGKKKKKTEQGEKEIELTLADTTVLIGTEKLDPNV 188 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +ARNI + +LP N Y +L+ +LVL+K+A EAL Sbjct: 189 YKSARNIEGVKVLPAAEFNCYTVLKQKRLVLTKAAFEAL 227 >gi|297843518|ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] gi|297335482|gb|EFH65899.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata] Length = 280 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPIISFEGEKVGETYLDLKTAPEDTARAVVHRAIVTDLQNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF-CS 120 K Y QK TG AR S+ GGG FGP P + +K + LA+ ALS Sbjct: 112 IKPYAQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAVSAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK + + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNSDKLVLTPAAVEFLNARY 261 >gi|6919958|sp|O80361|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein L4 [Nicotiana tabacum] Length = 282 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + + DG + G +++ L + ++ R L +R G + + RSEV G Sbjct: 46 ATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGG 105 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TGRAR S GGG FGP P + KK + LA+ ALS S Sbjct: 106 IKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSS--ASE 163 Query: 122 DIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +V++ ++ KTK + R L + + N L++RNI + +L Sbjct: 164 NTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLT 223 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+KSA++ L +R+ Sbjct: 224 PRTLNLFDILDSEKLVLTKSAVDFLNERY 252 >gi|99032310|pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome gi|251837156|pdb|3IY9|D Chain D, Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Length = 175 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 4/175 (2%) Query: 34 ARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93 +V WQ KRI +K+K R+EV G K + QKGTGRARH S +RGGG A GP Sbjct: 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR 60 Query: 94 -PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSN 150 P + LP KVR+L L+ AL+ K +D+ ++D+L +YL + +R S Sbjct: 61 GPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 120 Query: 151 ALI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ + ++ ++ A + NL+P G+NV+ +L+ LVL+ + LED Sbjct: 121 LLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLED 175 >gi|9956063|gb|AAG02005.1| similar to Homo sapiens CGI-28 protein mRNA with GenBank Accession Number AF132962 Length = 211 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Query: 38 RWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PII 96 WQ KRI +K+K R+EV G K + QKGTGRARH S +RGGG A GP P Sbjct: 1 MWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 60 Query: 97 GVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALI- 153 + LP KVR+L L+ AL+ K +D+ ++D+L +YL + +R S L+ Sbjct: 61 YYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVD 120 Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++ A + NL+P G+NV+ +L+ LVL+ + LED+ Sbjct: 121 LTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 173 >gi|216263708|ref|ZP_03435703.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1] gi|215980552|gb|EEC21373.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1] Length = 209 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|124514442|gb|EAY55955.1| ribosomal protein L4 [Leptospirillum rubarum] Length = 218 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +++ + L + + ++ + +L +++ Q R G + +K R EV+ Sbjct: 1 MDIQMVALKDDSLKSLEINVSAEEAELINIPLLHEIIKMQRAGIRSGTASTKTRGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QKGTGRAR S Q+RGG FGP P + P K LA+++A+ + Sbjct: 61 GKKPYRQKGTGRARQGSTRAPQWRGGAIIFGPRPRDYFYRQPAKKVVLAVKNAIFSHLEN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 + V+D+L KTK L+ F L ++I L N + RNIP + +L Sbjct: 121 KSLYVVDSLDVPSRKTKDLIALFNKWSLFPGEERILIIDNGLSENIYYSCRNIPGLEILL 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203 +N YD+L K+++SK A E + Sbjct: 181 PHQVNPYDLLIADKVLVSKEAFENMN 206 >gi|261854951|ref|YP_003262234.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2] gi|261835420|gb|ACX95187.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2] Length = 202 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V +D ISVSE IF +G++ + + R G + RSEV+ G Sbjct: 1 MELQV-----KDGAAISVSEQIFDRSYNEGLIHQAVVAFMAGARSGTKRQLTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG+GRAR + +R GG F P + +K +A+ S+ + Sbjct: 56 KKPWNQKGSGRARAGTTRSPIWRTGGVTFAARPRNFEQKINRKAYRVAMASIFSELVRQD 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++V+++L KT+ ++ + L + + D +F L +RN+ + L Sbjct: 116 RLIVVESLTVSSPKTREVLGLVKNLGIQGGRTLFVAEAFDEHFFLGSRNVIELGYLTADM 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ ++V++++A++ +E+ Sbjct: 176 LDPVSLVGAERVVITRAAVKMVEEWL 201 >gi|325282641|ref|YP_004255182.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP] gi|324314450|gb|ADY25565.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP] Length = 204 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 13/208 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V +G + + + +L V+ WQ +R G + +K R++VA T Sbjct: 1 MAQIQVVGKNGGRSIELELP------EVNPHVLHEVVTWQLAGRRRGTASTKTRAQVART 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KM+ QKGTG ARH ++V F GGG AFGP P + LP+KVR L L AL+D+ + Sbjct: 55 GRKMFSQKGTGNARHGDRTVPTFVGGGVAFGPKPRDYSYTLPRKVRQLGLAMALADRQAA 114 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +D KTK V + + LI+ D N +ARN+ +LP Sbjct: 115 GMLTAVDGYDLD-GKTKSFVQWAKDNGMDGSEKVLIVTD---DANVLRSARNVSWATVLP 170 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 V G+N YDILR +LV+ A+E ++ Sbjct: 171 VAGLNTYDILRHDRLVIDAVALEPAQEM 198 >gi|111115308|ref|YP_709926.1| 50S ribosomal protein L4 [Borrelia afzelii PKo] gi|123145710|sp|Q0SN28|RL4_BORAP RecName: Full=50S ribosomal protein L4 gi|110890582|gb|ABH01750.1| ribosomal protein L4 [Borrelia afzelii PKo] Length = 209 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR ++ + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKQKGTGRARVGTRRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N+ VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|313204918|ref|YP_004043575.1| LSU ribosomal protein l4p [Paludibacter propionicigenes WB4] gi|312444234|gb|ADQ80590.1| LSU ribosomal protein L4P [Paludibacter propionicigenes WB4] Length = 209 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +E+ V N GED G V+S+++ IF ++P + ++ +R G SKGRS+++ + Sbjct: 1 MEVKVVNTKGEDTGRVVSLNDTIFGIEPNDHAIYLDVKQYLANQRQGTHSSKGRSQLSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG G AR GGG+ FGP P L KKV+ LA + ALS K + Sbjct: 61 TRKLGKQKGGGGARPGDIKSGVRVGGGRMFGPTPRDYSFKLNKKVKQLARKSALSYKALN 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I V++N + KTK V+ ++L +++ +I ++N L+ARN+ + ++ V Sbjct: 121 NLITVVENFNFEAPKTKDFVSMTKSLQVADKKPLIVLANANKNVYLSARNLASSKVITVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ Y +L LVL++ A+ A+E FK Sbjct: 181 ELSTYVVLNAKSLVLTEDAVVAVEQIFK 208 >gi|302765881|ref|XP_002966361.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii] gi|302792867|ref|XP_002978199.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii] gi|300154220|gb|EFJ20856.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii] gi|300165781|gb|EFJ32388.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii] Length = 230 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + DGE G + + + + +G++ R + + +R G + +K R+EV G Sbjct: 5 ATLPLFSFDGECTGSVFLDLKVASAHTARGLVHRGVITELQNRRRGTASTKTRAEVRGGG 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S+ GGG FGP P + KK + LA+ AL + Sbjct: 65 RKPYKQKGTGRARRGSQRTPLRPGGGIVFGPKPKDWGIKINKKEKRLAISTALQSAAVDS 124 Query: 122 DIMVIDNLV--SKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +++ E KTK+ + +S +I ++ + ++RNI + +L Sbjct: 125 --IAVEDFEEKFTEPKTKFFLAAMERWGVDVSKHSLIFATNVNDFLEKSSRNIKTVKMLT 182 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YD+LR K++ + S I+ L + Sbjct: 183 PRSLNLYDVLRADKILFTSSGIDYLNQSY 211 >gi|255020766|ref|ZP_05292824.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC 51756] gi|254969762|gb|EET27266.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC 51756] Length = 205 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 5/192 (2%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +++ +FA+ + +L +V+ Q R G + K RS V G K + QKG+GRAR Sbjct: 16 VELADAVFAVPYNEALLHQVVVAQLAGLRSGTAAQKNRSAVRGGGRKPWKQKGSGRARAG 75 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI--MVIDNLVSKEC 134 S +RGGG+AF V + KK+ + A+R AL++ + +V+++ E Sbjct: 76 SIRSPLWRGGGRAFPGVTQNYAQKVNKKMWAGAMRTALAELLRQGRLQIVVVEDFA--EP 133 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 + + + + S+ L++ ++ N LA RN P + + Q I D+LR ++++ Sbjct: 134 RARLARDWLQKVGGSDLLLVMD-EVPENLFLALRNFPQVGIAGWQDIGPADLLRYGRVLM 192 Query: 195 SKSAIEALEDRF 206 A + + Sbjct: 193 DAQAAAKFGEVY 204 >gi|254796648|ref|YP_003081484.1| ribosomal protein L4/L1 family [Neorickettsia risticii str. Illinois] gi|254589885|gb|ACT69247.1| ribosomal protein L4/L1 family [Neorickettsia risticii str. Illinois] Length = 214 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 3 ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 E+ V + G ++V + + +L+ V+ WQ ++R G K+KG SEV+ T Sbjct: 5 EVGVLDFGATSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTT 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QFR GG FGPV ++ KKVRS AL ALS +F Sbjct: 65 RKPYRQKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSFALCSALSMRFAEG 124 Query: 122 DIMVIDNLVSKECKTKYLVTRFR---ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V+++ E K L+ F L + +I + + + AA N+ + +L Sbjct: 125 RLFVLESCRLGESKAATLLKWFASNTELSVGKKFLIVMEEKNEDLLRAASNLHWVKVLWG 184 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 NVYD++ ++L K++++ L R Sbjct: 185 SSANVYDVVLHDFVLLEKASVDVLVKRL 212 >gi|149179415|ref|ZP_01857969.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797] gi|148841726|gb|EDL56135.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797] Length = 209 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 MI +++++ G++ G A + +L V+ KRIG SK+K R V + Sbjct: 1 MISVAIQDKAGKEVGKYEFESTELANGINRQLLHDVVVMYEANKRIGSSKTKSRGMVVGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+Y QKGTGRAR + RGGG F P + LPKK LA R A+ KF Sbjct: 61 TKKLYRQKGTGRARAGASRTPVRRGGGHTFAKTPKDWSYRLPKKAVKLATRMAILSKFED 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +ID L + KTK + +AL LS+ ++ D +ARNI + + P Sbjct: 121 EQVTLIDELALQAPKTKEVAGVLKALGLSSTSCLLTVEGHDPVVWKSARNIAGVQVSPAS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N YD+L ++VL+KSA++ L Sbjct: 181 DLNAYDVLHQRQMVLTKSALDRL 203 >gi|319760330|ref|YP_004124268.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF] gi|318039044|gb|ADV33594.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF] Length = 213 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 1/189 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 ++ VSE IF ++ +V+ R G K R+EV+ + K + QKGTGRAR Sbjct: 21 MLPVSEKIFKYPFNMSLIHQVVSSYLINSRQGSRSQKSRAEVSGSNKKPWRQKGTGRARS 80 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +R GG F P + KK+ A++ LS N +++I+NL ++ K Sbjct: 81 GSLKSPIWRSGGVTFAAKPKKYNQKINKKMYKGAIKSILSKLVSENRLLLIENLFLEKPK 140 Query: 136 TKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK + + L L+ +++ ++ N LA RN+ + + + ++ +++ ++ Sbjct: 141 TKLFLEKLNCLIALNKSMLFITDMIESNVLLATRNLYKVEVRDLYHMDPVSLVKFDIVIF 200 Query: 195 SKSAIEALE 203 +K + +E Sbjct: 201 TKKVLNKIE 209 >gi|1685372|gb|AAB36823.1| ribosomal protein L4 [Borrelia burgdorferi] Length = 209 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ G I++ + +F ++ G + ++ + R+G S +K RSEV + Sbjct: 1 MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + KGTGRAR +K + GGG A GP P + LPKKV+ LA + LS + Sbjct: 61 KKPWKHKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N VI+N + KTK L + + ++I D+ + A +NI ++ +L Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207 >gi|168046642|ref|XP_001775782.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672934|gb|EDQ59465.1| predicted protein [Physcomitrella patens subsp. patens] Length = 230 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 8/208 (3%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L +GE G + + + + ++ R + + +R G + + RSEV G K Sbjct: 8 LPKLTFEGEAAGEVEMDLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRGGGRK 67 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRAR S GGG FGP P + KK + LA+ AL + Sbjct: 68 PYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAISTALQSAGA--NT 125 Query: 124 MVIDNLV--SKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178 +V+++ KTK ++ + + N+L+ + L++RN+ L+ Sbjct: 126 VVVEDFEEKFSTPKTKDFMSALKRWGVKQGENSLLF-SMNPSESLVLSSRNVNTFKLISP 184 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+YD+LR KL+L++S+++ LE ++ Sbjct: 185 RNLNLYDVLRADKLILTESSVKYLEQQY 212 >gi|187918345|ref|YP_001883908.1| 50S ribosomal protein L4 [Borrelia hermsii DAH] gi|119861193|gb|AAX16988.1| LSU ribosomal protein L1E [Borrelia hermsii DAH] Length = 222 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I + + +F + G + + + R+G + +K RSEV + Sbjct: 14 MERKVFSKDGQELRTIDLEDRVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF-CS 120 K + QKGTGRAR +K + GGG A GP P + LP+KV+ LA R LS Sbjct: 74 KKPWKQKGTGRARVGTKRNPIWVGGGIALGPKPRDYSYKLPRKVKRLAFRSVLSLCASAE 133 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + +++N + KT+ L + + ++ +I D+ + A RNI ++ +L Sbjct: 134 DRLKIVENFTIESGKTRELASIMKHFVKINGKTVILLGNDDQMVKRAGRNIRDLKILSFN 193 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SA+ L + + Sbjct: 194 RLRVVDLFYAKNLIALESAVNGLNELY 220 >gi|88608608|ref|YP_506158.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama] gi|109893610|sp|Q2GED8|RL4_NEOSM RecName: Full=50S ribosomal protein L4 gi|88600777|gb|ABD46245.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama] Length = 214 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 4/208 (1%) Query: 3 ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 E+ V + G ++V + + +L+ V+ WQ ++R G K+KG SEV+ T Sbjct: 5 EVGVLDFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTT 64 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S QFR GG FGPV ++ KKVRSLALR ALS +F Sbjct: 65 RKPYRQKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEG 124 Query: 122 DIMVIDNLVSKECKTKYLVTRF---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V+++ E K L+ F L + +I + + AA N+ + +L Sbjct: 125 RLFVLESSRLGESKAATLLKWFASNAELSVGKKFLIVTEEKNEGLLRAASNLHWVKVLWG 184 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 NVYD++ ++L K++++ L R Sbjct: 185 SSANVYDVVLHDFVLLEKASVDVLVKRL 212 >gi|242041475|ref|XP_002468132.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor] gi|241921986|gb|EER95130.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor] Length = 297 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 9/212 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + R G + + R EV Sbjct: 54 ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 111 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S+ GGG FGP P + +K + LA+ AL+ Sbjct: 112 GGKKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTALASAAV 171 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 + D V++ KT+ V + L + + D N +L+ RNI ++ Sbjct: 172 AEDAFVVEEFDEAFASGPKTRDFVAALQRWGLDPKQKAMFFATEFDDNVRLSGRNIGSLK 231 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +A++ L R+ Sbjct: 232 MLTPRTLNLYDILDARKLFFTPAAVDYLNSRY 263 >gi|29726790|pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 gi|29726821|pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Azithromycin gi|61680338|pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins: The Structure Of The 50s Ribosomal Subunit From Deinococcus Radiodurans In Complex With Tiamulin Length = 204 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 6/198 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++V +G + + + G+L V+ WQ +R G + ++ R++V+ TG Sbjct: 1 AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 54 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ + Sbjct: 55 RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 114 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ +D + KTK ++ + L + D N + AARN+ +++LPV G+ Sbjct: 115 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 174 Query: 182 NVYDILRCSKLVLSKSAI 199 NVYDILR +LV+ +A+ Sbjct: 175 NVYDILRHDRLVIDAAAL 192 >gi|256762004|ref|ZP_05502584.1| predicted protein [Enterococcus faecalis T3] gi|256683255|gb|EEU22950.1| predicted protein [Enterococcus faecalis T3] Length = 140 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 76/140 (54%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ DG G I+++E+IF ++P + ++ + Q R G K RS V Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LSDK Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120 Query: 121 NDIMVIDNLVSKECKTKYLV 140 N+++ ++ L KTK Sbjct: 121 NNLVAVEGLSFDAPKTKEFK 140 >gi|330814198|ref|YP_004358437.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp. IMCC9063] gi|327487293|gb|AEA81698.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp. IMCC9063] Length = 209 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L N++G+ G VS+ +F+LKP++ ++ V+ WQ +R +K R EV + Sbjct: 1 MKLEEINIEGKKIGTHEVSDQVFSLKPRKDLIQLVINWQLNNQRKKKGHTKSRGEVKGSR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119 K+ QKG+G ARH + + F GGG A GP L KKV++L L ALS K Sbjct: 61 RKIVQQKGSGGARHGNITAPIFVGGGIAHGPRHRGQTRLTKLNKKVKNLGLISALSSKVL 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +I + D KTK L+ +ALII F + +NIPN + V Sbjct: 121 TKNINIFDEPKLDTFKTKSFNNFLSKLESKSALIIHHDGASEKFIKSMKNIPNTKRIKVV 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G NVYD+++ K++ +K AI+ LE+R Sbjct: 181 GTNVYDLIKFEKILFTKEAIKTLEERL 207 >gi|284042805|ref|YP_003393145.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684] gi|283947026|gb|ADB49770.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684] Length = 210 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 87/191 (45%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 G + + + F K ++ +R + R G S +K R V G+K + QKGTGRAR Sbjct: 10 GEVVLDDLAFTAKFNGPLVHETVRSELNALRQGTSSTKTRGNVRGGGAKPWRQKGTGRAR 69 Query: 75 HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S ++GGG FGP P + +K R ALR ALS + + V D Sbjct: 70 AGSSRSPIWKGGGTVFGPSPRHYTFKVNRKARRAALRSALSVQADRGSLAVFDATTFDAP 129 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK N ++ + N L+ RN+ I +LPV+ V D++ + L++ Sbjct: 130 STKTASKLLADWGQPNPTLVLLDADEANAGLSFRNLERILVLPVEDAGVADVIGAASLLI 189 Query: 195 SKSAIEALEDR 205 S++A+ + R Sbjct: 190 SETALAQITAR 200 >gi|15639183|ref|NP_218629.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025423|ref|YP_001933195.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14] gi|6094081|sp|O83220|RL4_TREPA RecName: Full=50S ribosomal protein L4 gi|226731440|sp|B2S2D7|RL4_TREPS RecName: Full=50S ribosomal protein L4 gi|3322454|gb|AAC65175.1| ribosomal protein L4 (rplD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017998|gb|ACD70616.1| ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14] gi|291059597|gb|ADD72332.1| ribosomal protein L4/L1 family [Treponema pallidum subsp. pallidum str. Chicago] Length = 216 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E +V +++G + + E +F L +G++ + + KR+G + +KGRSEV + Sbjct: 1 MEKTVYSVEGVALRSVELDESVFGLSVNRGVIYYAINSELSNKRLGTACTKGRSEVHGSN 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K Y QKGTGRAR K GGG FGP P +ALPKKV+ LA++ LS K + Sbjct: 61 TKPYKQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFHYALPKKVKRLAMKSLLSLKAQGD 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + VI++ + KT+ L+ R + D + A RNIP ++ L + Sbjct: 121 ALTVIEDFTVESGKTRDLIQVLRHFAQRERTVFILQNDDALLKRAGRNIPTLSFLSYNRL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207 +D+ K+++ ++A+ + D ++ Sbjct: 181 RAHDLFYGRKVLVLETAVHKIADFYR 206 >gi|66810850|ref|XP_639132.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4] gi|60467762|gb|EAL65778.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4] Length = 258 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGE--DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 IE+ V N + + I +S+D+F++ + +L R++R+Q + + G ++ + Sbjct: 49 IEVPVLNFNDKLSPIENIQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMER 108 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 T K QKG+G AR + FRGG + F P H LP+KVR L L+ ALS K Sbjct: 109 TNKKPTRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLA 168 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++V+D + KTK L+++ D L++D ++ ++ N+ I+ LP Sbjct: 169 QNKLVVVDGFNLESHKTKELLSKLPK-DWGRTLLVD-SEISDFLNKSSLNVQKIDTLPQL 226 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G+NVY IL+ LVL+KS++EAL+ R Sbjct: 227 GLNVYTILQNDTLVLTKSSVEALQARL 253 >gi|114675333|ref|XP_001163944.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 2 [Pan troglodytes] Length = 221 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S +RGGG A GP P + LP KVR+L L+ AL+ K +D+ Sbjct: 128 WPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDL 187 Query: 124 MVIDNLVSKECKTKYL--VTRFRALDLSNALIID 155 ++D+L +YL + +R + L++D Sbjct: 188 HIMDSLELPTGDPQYLTELAHYRRWG-DSVLLVD 220 >gi|296120748|ref|YP_003628526.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776] gi|296013088|gb|ADG66327.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776] Length = 209 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 2/204 (0%) Query: 1 MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 MI L + GE G A + +L + R G KSK R+E+A Sbjct: 1 MISLPIHTSTGEATGRNYEFDPAELADSINKQLLHDAVVMYQANLRQGTFKSKSRAEIAG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 + K++ QKGTGRAR +K RGGG AF P + LP+K LA R AL KF Sbjct: 61 SKQKLFKQKGTGRARQGNKRQPVRRGGGHAFAKRPTDFSYRLPRKALQLATRMALLGKFQ 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPV 178 N++ +I++L + KTK + + L L + +I D N +ARNIP + + P Sbjct: 121 DNEVTIIESLALEAPKTKVVASLLNKLGLESKGCLISIPSHDSNVWKSARNIPKVGVSPA 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 G+N Y +L +LV++ A++ L Sbjct: 181 AGLNAYQLLLRKQLVVTTDALDLL 204 >gi|255569265|ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis] gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4, putative [Ricinus communis] Length = 283 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 6/208 (2%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L + + GE G + + ++ R + KR G + + R+EV G Sbjct: 53 TLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGK 112 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QK TGRAR S GGG FGP P + KK + LA+ AL + Sbjct: 113 KPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTALCS--ATES 170 Query: 123 IMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 ++ ++ ++ KTK + + L ++ + + L++RNI + +L Sbjct: 171 MLCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIGTLRMLTP 230 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ A++ L R+ Sbjct: 231 RTLNLFDILNSDKLVLTPDAVDYLNGRY 258 >gi|307104743|gb|EFN52995.1| hypothetical protein CHLNCDRAFT_49059 [Chlorella variabilis] Length = 222 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 L V+ LDG D G S+S + G++ R L R G + + RSEV G Sbjct: 13 LPVKKLDGSDVGSSASISLRVADEDTANGLVHRYLVMVRQNARQGNASTLTRSEVRGGGR 72 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKG+G AR S+ GGG +FGP P ++ KK R LA AL D Sbjct: 73 KPYKQKGSGNARRGSRRSPLMPGGGISFGPKPRDWSISMNKKERKLACATALQSAAA--D 130 Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V D+ + TK LV A+ + +++ + + L+ RN+P + + Sbjct: 131 MLVCDDFGALEAVSTKGLVASLAAMGVQEGEKVLLVVNEANEKLYLSGRNLPTLAINTAN 190 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + VYD+L ++V+ +SA+ L + F Sbjct: 191 AVQVYDVLNADRIVVEQSALAYLNEWF 217 >gi|147856052|emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera] Length = 306 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + GE G ++ L + ++ R + +R G + + R EV G K Sbjct: 53 IPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKK 112 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S+ GGG FGP P + +K + LA+ A+S + Sbjct: 113 PYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAV--NT 170 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +V+++ + KTK ++ + + + ++ N +L++RNI + +L + Sbjct: 171 IVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPR 230 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++DIL KLVL++ ++ L + Sbjct: 231 TLNLFDILNSDKLVLTQETVDYLNRMY 257 >gi|170085109|ref|XP_001873778.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651330|gb|EDR15570.1| predicted protein [Laccaria bicolor S238N-H82] Length = 253 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 1/196 (0%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72 + ++ + +F ++ +L + R G + +K R EV +G+K++ QKGTGR Sbjct: 38 EDSLVVLDPTVFNHPIRRDVLHLCVTHYLDSLRQGSANTKTRGEVRGSGAKLHRQKGTGR 97 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR GGG AFGP P LP+KV + +R ALS K + ++ +L Sbjct: 98 ARVGDGQSPIRVGGGVAFGPKPRDFSTKLPRKVIEMGMRVALSVKMKERQVGIMASLDWP 157 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 KT+ LV + L L L + G + + A NIP + ++ +NVY+I++ + Sbjct: 158 NAKTRNLVQKIDLLGLRKTLFVTGEGVVPAGLKQAMANIPLVQVITADEVNVYEIMKWQR 217 Query: 192 LVLSKSAIEALEDRFK 207 LVL A+E E K Sbjct: 218 LVLDVKAVEFFERTLK 233 >gi|29893583|gb|AAP06837.1| unknown protein [Oryza sativa Japonica Group] Length = 426 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + KR G + + R EV Sbjct: 65 ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 ++D V++ + KT+ V + L + N +L+ RNI ++ Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +AI L R+ Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|283780375|ref|YP_003371130.1| 50S ribosomal protein L4/L1e [Pirellula staleyi DSM 6068] gi|283438828|gb|ADB17270.1| ribosomal protein L4/L1e [Pirellula staleyi DSM 6068] Length = 209 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 1/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V N G + G + A K Q +L V+ R G ++KGR EVA + Sbjct: 1 MATLPVFNRSGAEVGKYEIDPAEIAPKISQQLLHDVVVMYQANLRQGTHRTKGRGEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR S+ RGGG F P + LP+K A R A++ K Sbjct: 61 TKKMYRQKGTGNARAGSRRSGVRRGGGHIFALRPRDYSYRLPRKAVQAATRMAIAHKLNQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N ++VID L KTK + T + L L+ A ++ LD N +ARNI + + PV Sbjct: 121 NSVVVIDELSMAAPKTKEVATILKTLGLAGASTLVTTAGLDVNVYKSARNIDKVTVSPVA 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207 +N +L K++++K+A++A++ R K Sbjct: 181 DLNALSVLMPRKMLVTKAALDAIKTRAK 208 >gi|149072010|ref|YP_001293581.1| 50S ribosomal protein L4 [Rhodomonas salina] gi|134302961|gb|ABO70765.1| 50S ribosomal protein L4 [Rhodomonas salina] Length = 216 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 9/208 (4%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V L GE S++ + P + +L R + Q+ R G S K RSEV G K Sbjct: 10 KVHTLAGEATSETSITLSVQDTNP-KYLLHRAIVAQNNGLRQGTSSCKTRSEVRGGGKKP 68 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QKGTG AR S + ++GGG AFGP P + K LAL AL +F + + Sbjct: 69 WKQKGTGNARSGSSNSPLWKGGGVAFGPQPRSYAKKMNTKEWRLALNTALQSRF--DKTV 126 Query: 125 VIDNL--VSKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 V+++ K KTK V + D S+ +I ++ N L+ RN+ N+ LL Sbjct: 127 VVEDFSNSIKNPKTKNAVEVLSKITNIADNSSKTLIILSDVNDNVNLSLRNLSNVTLLRS 186 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 +N+ DIL +K++++ A++ +++ + Sbjct: 187 NTLNIRDILLANKIIITDKALQNIQEVY 214 >gi|225434666|ref|XP_002280152.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 290 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + + GE G ++ L + ++ R + +R G + + R EV G K Sbjct: 53 IPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKK 112 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S+ GGG FGP P + +K + LA+ A+S + Sbjct: 113 PYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAV--NT 170 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +V+++ + KTK ++ + + + ++ N +L++RNI + +L + Sbjct: 171 IVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPR 230 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++DIL KLVL++ ++ L + Sbjct: 231 TLNLFDILNSDKLVLTQETVDYLNRMY 257 >gi|87306537|ref|ZP_01088684.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645] gi|87290716|gb|EAQ82603.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645] Length = 222 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 1/203 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + GE G + A + + +L + R G ++K R EVA + Sbjct: 1 MPSLPIFDTTGEKVGSYDIELTDIAPRISKQLLHDAVVMYQANLRQGTHRTKARGEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR K RGGG P + L +K LA R A + K S Sbjct: 61 TKKMYRQKGTGNARAGHKRSGVRRGGGHIHAKRPRDYSYRLNRKALQLATRMAFASKIQS 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++ L E KTK + +AL + + +I LD +ARNI + + PV Sbjct: 121 GQVVILNELALAEVKTKAVANTLKALKVYGGSTLITIASLDDKVYKSARNIEKVTVSPVS 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N IL +LV++KSA++A+ Sbjct: 181 ELNALKILSPKRLVVTKSAMDAI 203 >gi|32475059|ref|NP_868053.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1] gi|46577190|sp|Q7UN19|RL4_RHOBA RecName: Full=50S ribosomal protein L4 gi|32445599|emb|CAD75600.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1] gi|327540579|gb|EGF27154.1| 50S ribosomal protein L4 [Rhodopirellula baltica WH47] Length = 222 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L + + G++ G + + A + + +L V+ KR G ++ R +V+ T Sbjct: 1 MANLPILDASGKEVGQYEIDTEQIANRVSKQLLHDVVVMYQANKRQGSHNTRTRGQVSGT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 KMY QKGTG AR SK + RGGG A P + LPKK +A R A+ + Sbjct: 61 NKKMYRQKGTGNARAGSKRTNVRRGGGVARTVKPRDYSYRLPKKAIKIATRMAIRSRIDD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I+VI+ L KT + + L L+N +I D+ + RNI + + PV+ Sbjct: 121 GEIVVINELKLDAPKTSQIAQILKNLGLANTTTLIATAGDDQIIYKSGRNISGVTVEPVR 180 Query: 180 GINVYDILRCSKLVLSKSAIEALED 204 +N +L +++ ++ A++ ++D Sbjct: 181 QLNALTLLTPKRVLFTQEALDRVKD 205 >gi|254442040|ref|ZP_05055516.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235] gi|198256348|gb|EDY80656.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235] Length = 211 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 1/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSE-DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L + DG + G V +F + V+ Q+ R G + +K R EV Sbjct: 1 MKLKLFKNDGSEGGETEVDGLPVFEGDKGLQAVKEVVVAQAANGRQGSASTKTRGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S + GGG FGP P + KKV++LA AL D+ Sbjct: 61 GKKPWRQKGTGRARAGSNRSPIWVGGGIVFGPRPRDYSKKINKKVKTLAFGRALVDRISD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I+VID+L KTK R + +++ +L LA RN+ ++L Sbjct: 121 ESIVVIDSLDIAPAKTKVAEGLVRGIAPKGKVLVIDKELSDTSVLALRNLVGVDLEEASL 180 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+ + +++++S ++ L +R K Sbjct: 181 VSVTDLCQFKTIIVTRSGLDVLVERAK 207 >gi|2792020|emb|CAA63651.1| ribosomal protein L4 [Spinacia oleracea] Length = 293 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L + N GE G ++ + + ++ R L KR G + + R+EV G K Sbjct: 55 LPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRK 114 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S+ GGG FGP P + KK R LAL A++ + Sbjct: 115 PYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAV--GNS 172 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 V++ ++ KTK + + L + L N + + RNI + LL + Sbjct: 173 FVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPR 232 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L KLV ++ I+ L R+ Sbjct: 233 SLNLFDVLNAEKLVFTEGTIQYLNQRY 259 >gi|3914665|sp|O49937|RK4_SPIOL RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor gi|189096129|pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|2792007|emb|CAA75149.1| chloroplast ribosomal protein L4 [Spinacia oleracea] Length = 293 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L + N GE G ++ + + ++ R L KR G + + R+EV G K Sbjct: 55 LPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRK 114 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRAR S+ GGG FGP P + KK R LAL A++ + Sbjct: 115 PYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAV--GNS 172 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 V++ ++ KTK + + L + L N + + RNI + LL + Sbjct: 173 FVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPR 232 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N++D+L KLV ++ I+ L R+ Sbjct: 233 SLNLFDVLNAEKLVFTEGTIQYLNQRY 259 >gi|149198923|ref|ZP_01875964.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155] gi|149137918|gb|EDM26330.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155] Length = 215 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++ + G+ G + ++ + + + + R G + +K RSE Sbjct: 1 MTKVNTVDSKGQASGELEINSKWLEFEKGEQAVHESVVAFLASLRSGSANTKTRSEKRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTG AR S + GGG AFGP P + KKVR LA+R AL+++ + Sbjct: 61 GRKPWRQKGTGNARAGSTRSPIWTGGGVAFGPKPRSYAKNVNKKVRRLAVRRALAERIQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNIN----- 174 +++V+D+ ++ TK + +++ ++ +II L N + N+ N Sbjct: 121 EELIVVDSFAFEKPSTKTAIAFLESVNAADRPVIILSDDLTENIE----NLENTAKSFNN 176 Query: 175 ---LLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ +N YDIL K++++K+A+E + Sbjct: 177 VSLVMTASEVNAYDILSGKKVIITKAALEQV 207 >gi|297623275|ref|YP_003704709.1| 50S ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093] gi|297164455|gb|ADI14166.1| ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093] Length = 216 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 7/192 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ + E K +++ +P+ +L V+ WQ ++R G + +K R V+ T Sbjct: 1 MDVTLDVIGSERKVTLALP------EPKVSVLHEVVSWQLSKRRRGTAATKTRGTVSGTT 54 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +KMY QKGTGRARH S F GGG AFGP P + LPK+VR L L+ AL+ + N Sbjct: 55 AKMYPQKGTGRARHGSYKAPIFVGGGIAFGPQPRSYEYTLPKRVRRLGLKMALAARAQDN 114 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + +++ +TK V + + + D + AARN+P +++LP +G+ Sbjct: 115 KLTLVEAFGIG-GRTKEFVAWAKDHGFDGSERVLLVTDDELARRAARNLPWVSVLPSRGL 173 Query: 182 NVYDILRCSKLV 193 NVYDILR +V Sbjct: 174 NVYDILRHDHVV 185 >gi|145628331|ref|ZP_01784132.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145640873|ref|ZP_01796455.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021] gi|144980106|gb|EDJ89765.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145274387|gb|EDK14251.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.4-21] Length = 158 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%) Query: 52 KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 K R+EV+ +G K + QKGTGRAR +R GG F P + KK+ A++ Sbjct: 4 KTRAEVSGSGKKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIK 63 Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 LS+ + ++V++ KTK LV + + L + +ALII LD N LAARN+ Sbjct: 64 SILSELVRQDRLVVVEKFELDAPKTKVLVQKLKDLAVEDALIIT-ASLDENLFLAARNLY 122 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +++ VQGI+ ++ K++++ A++ +E+ Sbjct: 123 KVDVRDVQGIDPVSLIAFDKVIVTVDAVKQIEEIL 157 >gi|94676724|ref|YP_588777.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166234636|sp|Q1LTD7|RL4_BAUCH RecName: Full=50S ribosomal protein L4 gi|94219874|gb|ABF14033.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 201 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VS +IF + + ++ +V+ + R G K R+EV + Sbjct: 1 MELVLQDTQ----KSLTVSNNIFGYRFNEALIHQVIVAYAAHTRSGNHAQKSRAEVVGSN 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR + +R GG F P + KK+ AL+ S+ Sbjct: 57 KKPWRQKGTGRARAGTVKSPLWRSGGVTFAAKPRDYSQKINKKMYRGALKSIFSELIRQK 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ + KTK LV + + + L LII A + + + + I Sbjct: 117 RLIVVEQFCIQAPKTKLLVDKLKKITLKKVLIITHLLELNLLLAARN-LYTVEICDIANI 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N+ ++ +++++ ++I+ +E+R Sbjct: 176 NLISLVTFDQVIITANSIKQIEERL 200 >gi|4680695|gb|AAD27737.1|AF132962_1 CGI-28 protein [Homo sapiens] Length = 311 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 14/211 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGGKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKA------FGPVPIIGVHALPKKVRSLALRHALSDKF 118 + RH + Q A + P P + LP KVR+L L+ AL+ K Sbjct: 128 LAAE-----RHWAGPAWQHPLSALARRRCCPWPPGPTSYYYMLPMKVRALGLKVALTVKL 182 Query: 119 CSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINL 175 +D+ ++D+L +YL + +R S L+ + ++ ++ A + NL Sbjct: 183 AQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNL 242 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +P G+NV+ +L+ LVL+ + LED+ Sbjct: 243 IPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273 >gi|332178456|gb|AEE14145.1| ribosomal protein L4/L1e [Thermodesulfobium narugense DSM 14796] Length = 203 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 3/201 (1%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 +SV +L+G I + +K ++ + + R G + +K R EV G K Sbjct: 2 ISVYDLEGNKVKEIESNLT--GIKDNSHVVYMQVVRELAGMRSGSACTKTRGEVRGGGKK 59 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QK TGRARH S +R GG FGP P +LPKKV L+ AL + + Sbjct: 60 PYAQKHTGRARHGSIRSPIWRKGGITFGPKPRKYSFSLPKKVIKLSRNIALKNLIDQDRF 119 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V++NL + E K K+ + L N +I N A N+PN ++ V + Sbjct: 120 IVVENLSNIEPKAKFASNFVKKLPGENCKSLIVIDDYFENVMRAFANLPNFKIVDVNNLK 179 Query: 183 VYDILRCSKLVLSKSAIEALE 203 V DIL +++L+ A+E LE Sbjct: 180 VADILWSQRVILTPEALECLE 200 >gi|225711982|gb|ACO11837.1| Mitochondrial 39S ribosomal protein L4 [Lepeophtheirus salmonis] gi|290562960|gb|ADD38874.1| 39S ribosomal protein L4, mitochondrial [Lepeophtheirus salmonis] Length = 275 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + D++ + P+ I+A L+WQ K++ + K R E+ G++ + QKGTGRARH Sbjct: 59 VDLHPDVWGVAPRLDIIADNLKWQENYKKVEYNYVKDRYELPGKGARPWPQKGTGRARHK 118 Query: 77 SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---DNLVSK 132 SK + GGKA GP P LP + R L H LS KF +DI+++ D+L S Sbjct: 119 SKRSPIWLQGGKAHGPKGPKTNFFMLPYQHRVNGLIHTLSVKFAQDDIIIVQNFDDLEST 178 Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + + + R LS + N A+ +I ++N++P G+NV+ +L+ L Sbjct: 179 DPEDLEDLISERGWGLSTLFVNGDSIAPENITAASESILHVNVMPSFGLNVHSMLKHKTL 238 Query: 193 VLSKSAIEALEDRF 206 VL+ A+ +ED+ Sbjct: 239 VLTLDAVNLIEDKL 252 >gi|119953268|ref|YP_945477.1| 50S ribosomal protein L4 [Borrelia turicatae 91E135] gi|119862039|gb|AAX17807.1| LSU ribosomal protein L1E [Borrelia turicatae 91E135] Length = 222 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I++ E +F + G + + + R+G + +K RSEV + Sbjct: 14 MERKVFSKDGQELRTINLEEGVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR +K + GGG A GP P + LPKKV+ LA R LS Sbjct: 74 KKPWKQKGTGRARVGTKRNPVWVGGGVALGPKPRDYSYKLPKKVKRLAFRSVLSLCVSVE 133 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + +++N + KTK L + ++ +I D+ + A +NI ++ +L Sbjct: 134 DRLKIVENFTIESGKTKDLALIMKNFIKINGKTVILLGNDDQMVKRAGKNIRDLKILSFN 193 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SAI L + + Sbjct: 194 RLRVVDLFYAKNLIALESAINGLNELY 220 >gi|203284389|ref|YP_002222129.1| 50S ribosomal protein L4 [Borrelia duttonii Ly] gi|203287923|ref|YP_002222938.1| 50S ribosomal protein L4 [Borrelia recurrentis A1] gi|226730623|sp|B5RM37|RL4_BORDL RecName: Full=50S ribosomal protein L4 gi|226730625|sp|B5RPI3|RL4_BORRA RecName: Full=50S ribosomal protein L4 gi|201083832|gb|ACH93423.1| 50S ribosomal protein L4 [Borrelia duttonii Ly] gi|201085143|gb|ACH94717.1| 50S ribosomal protein L4 [Borrelia recurrentis A1] Length = 209 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E V + DG++ I + + +F + G + + + R+G + +K R+EV + Sbjct: 1 MERKVFSKDGQELRTIDLDDGVFNIDVSYGSIYNAINNELANLRVGTASTKTRAEVRGSS 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120 K + QKGTGRAR ++ + GGG A GP P + LPKKV+ LA + LS Sbjct: 61 KKPWKQKGTGRARVGTRRNPVWVGGGIALGPKPRDYSYKLPKKVKRLAFKSVLSLCASVD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V++N KTK L + + +I D+ + A +NI ++ +L Sbjct: 121 DRLKVVENFTIDSGKTKELALIIKNFIKHNGRTVILLGNDDQMIKRAGKNIRDLKILSFN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + V D+ L+ +SAI L + + Sbjct: 181 RLRVVDLFYTKNLIALESAINGLNELY 207 >gi|326499386|dbj|BAJ86004.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 315 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 9/211 (4%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 L V N GE G +++ DI A P + ++ R L R G + + R EV Sbjct: 63 TLPVINFTGEKVGEVAL--DIKAAPPSTARAVVHRALITDRQNARRGTASTLTRGEVRGG 120 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ + Sbjct: 121 GRKPYGQKKTGKARRGSVRTPLRPGGGVIFGPKPRDWTIKINRKEKRLAISTALASAAVA 180 Query: 121 NDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINL 175 ND V+ + +T+ V + L + +LD N + + RNI + + Sbjct: 181 NDSFVVQEFDEEFATGPRTRDFVAALQRWGLDPREKAMFFSTELDDNVRPSGRNIGTLKM 240 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L + +N+YDIL K + +AIE L R+ Sbjct: 241 LTPRTLNLYDILDARKHFFTPAAIEYLNSRY 271 >gi|115452095|ref|NP_001049648.1| Os03g0265400 [Oryza sativa Japonica Group] gi|108707338|gb|ABF95133.1| 50S ribosomal protein L4, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113548119|dbj|BAF11562.1| Os03g0265400 [Oryza sativa Japonica Group] gi|215678998|dbj|BAG96428.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692528|dbj|BAG87948.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737540|dbj|BAG96670.1| unnamed protein product [Oryza sativa Japonica Group] Length = 323 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + KR G + + R EV Sbjct: 65 ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 ++D V++ + KT+ V + L + N +L+ RNI ++ Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +AI L R+ Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|226356896|ref|YP_002786636.1| 50S ribosomal protein L4 [Deinococcus deserti VCD115] gi|259491551|sp|C1CXG5|RL4_DEIDV RecName: Full=50S ribosomal protein L4 gi|226318886|gb|ACO46882.1| putative 50S ribosomal protein L4 [Deinococcus deserti VCD115] Length = 201 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 7/204 (3%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V +G + + + IL V+ WQ +R G + +K R++V+ + Sbjct: 1 MAQINVIGKNGGRTIDLELP------EVNAAILHDVVTWQLASRRRGTASTKTRAQVSKS 54 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G KMY QKGTG ARH + V F GGG AFGP P + LP+KVR L L AL+D+ Sbjct: 55 GKKMYSQKGTGNARHGDRGVPTFVGGGVAFGPKPRSYGYTLPRKVRQLGLAMALADRQDG 114 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ +D KTK V+ L + + D + +ARN+ +LPV G Sbjct: 115 GKLIAVDGFDLD-GKTKSFVSWAAQNGLDGSERVLIVTDDAQTRQSARNVAWATVLPVAG 173 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 +N YDILR +LV+ A+E ++ Sbjct: 174 LNAYDILRHDRLVIDAVALEPAQE 197 >gi|218192491|gb|EEC74918.1| hypothetical protein OsI_10864 [Oryza sativa Indica Group] Length = 324 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + KR G + + R EV Sbjct: 66 ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 123 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ Sbjct: 124 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 183 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 ++D V++ + KT+ V + L + N +L+ RNI ++ Sbjct: 184 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 243 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +AI L R+ Sbjct: 244 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 275 >gi|24213440|ref|NP_710921.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str. 56601] gi|45658702|ref|YP_002788.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|7674299|sp|Q9XD35|RL4_LEPIN RecName: Full=50S ribosomal protein L4 gi|73917532|sp|Q72NG2|RL4_LEPIC RecName: Full=50S ribosomal protein L4 gi|5163205|gb|AAD40584.1|AF115283_3 ribosomal protein L4 [Leptospira interrogans] gi|24194210|gb|AAN47939.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str. 56601] gi|45601946|gb|AAS71425.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 211 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 2/203 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RS V+ G Sbjct: 1 MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSMVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG GP + + K++ A+ L K ++ Sbjct: 61 KKPWSQKGTGRARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSKLKHRAVLSILGKKAQAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN--FQLAARNIPNINLLPVQ 179 + V+++L KE TK + F+ ++L N +I N + + RNIP + + + Sbjct: 121 AVKVVEDLDPKEYNTKAFDSIFKNMNLKNTGVIGLLVQGENDFLKKSVRNIPTVKYINSK 180 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 I+ DIL LV++++A++ + Sbjct: 181 RISCRDILYNRNLVITEAALKEM 203 >gi|116515258|ref|YP_802887.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285346|sp|Q057A5|RL4_BUCCC RecName: Full=50S ribosomal protein L4 gi|58384691|gb|AAW72706.1| 50S ribosomal protein L4 [Buchnera aphidicola (Cinara cedri)] gi|116257112|gb|ABJ90794.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 201 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++SE IF + ++ +++ R+R G K RSEV+ +G K + QKGTGRAR S Sbjct: 13 NISESIFNKVFNEPLVHQIIVCYLARRRQGSKAQKSRSEVSGSGKKPWRQKGTGRARSGS 72 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 +R GG F P + KK+ A++ LS+ N + + + KTK Sbjct: 73 LRSPIWRSGGVTFAAKPKKYKLKMNKKMYRYAIKSILSELIRQNRFFLFKEFIIEFPKTK 132 Query: 138 YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 L+ + ++L + LII + + + A+RN+ ++ ++ V+ IN ++ K++++ S Sbjct: 133 ILLKKLELINLKSVLIITAHK-NTSLLYASRNLYHVCVINVKSINPVILISYEKVLITLS 191 Query: 198 AIEALEDRFK 207 AI+ +E FK Sbjct: 192 AIKKIEVMFK 201 >gi|224373648|ref|YP_002608020.1| 50S ribosomal protein L4 [Nautilia profundicola AmH] gi|223588448|gb|ACM92184.1| ribosomal protein L4/L1 family [Nautilia profundicola AmH] Length = 193 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 4/186 (2%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 + ED L ++ +R G + +K R EV+ G K + QKG GRAR S Sbjct: 8 QLPEDF--QNINPHNLYLYVKAYLANQRAGTAHTKTRGEVSGGGKKPFRQKGLGRARQGS 65 Query: 78 KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 QF GGG A GP L KK + +AL++AL++K + + V+D++ + KT Sbjct: 66 IRAPQFVGGGVAHGPRNERDWSQKLNKKQKRVALKYALNEKAENGKLFVVDSIKIESGKT 125 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + ++ + LI+ ++D LA RNIPN+ ++ + +N Y ++ K Sbjct: 126 KDATKWLKEINQRDYLIVVD-EMDEKTFLAFRNIPNVYIITPEELNAYYASVFHSIIFDK 184 Query: 197 SAIEAL 202 +A E + Sbjct: 185 AAYEKV 190 >gi|222624621|gb|EEE58753.1| hypothetical protein OsJ_10246 [Oryza sativa Japonica Group] Length = 323 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + KR G + + R EV Sbjct: 65 ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S GGG FGP P + +K + LA+ AL+ Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPVRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 ++D V++ + KT+ V + L + N +L+ RNI ++ Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +AI L R+ Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274 >gi|303284373|ref|XP_003061477.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456807|gb|EEH54107.1| predicted protein [Micromonas pusilla CCMP1545] Length = 252 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 3 ELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L V +DG G + + F + ++ RV+ WQ + R G K+K R EV+ T Sbjct: 3 TLPVFTIDGTPTGETLILPGRHFDQPLRVDLVHRVVHWQRNKARKGRKKTKTRGEVSGTT 62 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG GRAR S Q RGGG A GPV AL K+VR L+ ALS K Sbjct: 63 RKARPQKGGGRARVGSLRAPQMRGGGVAHGPVVRSYETALNKRVRRAGLKVALSAKLAEG 122 Query: 122 DIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLD----RNFQLAARNIPNINLL 176 +M++ + E KTK+L R L L N + G + N + A+RN+P ++++ Sbjct: 123 RVMLVRSTHDGVEPKTKWLDERLDKL-LGNQSLAAGERSHSTWISNAKRASRNMPYVHVM 181 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +G+NVYDILR L ++ A+ L R Sbjct: 182 HQRGLNVYDILRYRSLAMTPDALRELVRRL 211 >gi|330899736|gb|EGH31155.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 154 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 1/154 (0%) Query: 53 GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRH 112 RS+V G + + QKGTGRAR + +RGGG F P L KK+ ALR Sbjct: 1 TRSDVRGGGKRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRS 60 Query: 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 L++ ++ ++V+ + + KTK L+ + + L++ LI+ +D+N LAARN+P+ Sbjct: 61 ILAELVRTDRLVVVQDFAVEAPKTKDLLNKLTGMGLTDVLIVSDA-VDQNLYLAARNLPH 119 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +++ VQG + ++ K++++ SA++ E+ Sbjct: 120 VDVRDVQGSDPVSLIAYDKVLITVSAVKKFEELL 153 >gi|254995178|ref|ZP_05277368.1| 50S ribosomal protein L4 [Anaplasma marginale str. Mississippi] gi|255003352|ref|ZP_05278316.1| 50S ribosomal protein L4 [Anaplasma marginale str. Puerto Rico] gi|255004476|ref|ZP_05279277.1| 50S ribosomal protein L4 [Anaplasma marginale str. Virginia] Length = 178 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 92/174 (52%) Query: 33 LARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP 92 L V+ WQ ++R G K++ S+V+ T +K Y QK TGRAR S QFRGG FGP Sbjct: 2 LRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRARQGSLRSPQFRGGAVVFGP 61 Query: 93 VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNAL 152 V ++L KKVR L L+ ALS K + ++V+D+ KT F + Sbjct: 62 VNRSHAYSLNKKVRRLGLKVALSMKVSDSKLVVLDDSGLLLEKTADAHVAFGNFGAHGSY 121 Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ + A RN+PN++LL GINV DILR ++L+ ++ LE R Sbjct: 122 LVVAETYEDKVMCACRNLPNVDLLKYAGINVLDILRHDCVILTVGTVKCLESRL 175 >gi|224092093|ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1| predicted protein [Populus trichocarpa] Length = 279 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + GE G + + + ++ R + KR G + + R EV G Sbjct: 48 ATLPILSFTGEKIGETYLDLKSAPPETARAVVHRGIITDQQNKRRGTASTLTRGEVRGGG 107 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TGRAR S GGG FGP P + +K + LA+ ALS + Sbjct: 108 RKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINRKEKRLAMSTALSSAASES 167 Query: 122 DIMV-IDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 + ++ ++ ++ KTK + L ++ + N L++RNI + +L Sbjct: 168 ESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEKVMFLMMDVSDNVGLSSRNIGTLRML 227 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ ++ L R+ Sbjct: 228 TPRTLNLFDILNSDKLVLTPDTVDYLNGRY 257 >gi|169843886|ref|XP_001828667.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130] gi|116510276|gb|EAU93171.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130] Length = 297 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 1/192 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +F ++ IL + R G + +K RSEV +G K+ QKGTGRAR Sbjct: 74 VVLDPTVFDHPIRRDILHLCVTHHLDSLRQGSANTKTRSEVRGSGRKIRPQKGTGRARLG 133 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 GGG AFGP P LP+KV + +R ALS K + V+ L KT Sbjct: 134 DGQSPMLVGGGIAFGPKPRDFSTKLPRKVIQMGMRVALSAKVKERHLGVMSRLDWPNGKT 193 Query: 137 KYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 K+L + L L L I G ++ + A + + V +NVY++L+ +++L Sbjct: 194 KHLQQKIDLLGLRKTLFITGENEVTTGLKRAINMLKYAAAVTVAEVNVYELLKWERVILD 253 Query: 196 KSAIEALEDRFK 207 A+E E K Sbjct: 254 LKAVEYFETTLK 265 >gi|194707774|gb|ACF87971.1| unknown [Zea mays] Length = 314 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 11/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + R G + + R EV Sbjct: 60 ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 117 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S+ GGG FGP P + +K + LA+ A+ Sbjct: 118 GGRKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVSAAK 177 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 V++ KT+ V + L + D N +L+ RNI ++ Sbjct: 178 DA--FVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLK 235 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +A++ L R+ Sbjct: 236 MLTPRTLNLYDILDARKLFFTPAAVDYLNSRY 267 >gi|226501908|ref|NP_001149608.1| 50S ribosomal protein L4 [Zea mays] gi|195628460|gb|ACG36060.1| 50S ribosomal protein L4 [Zea mays] Length = 314 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 11/212 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 L V + GE G +++ + P + ++ R + R G + + R EV Sbjct: 60 ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 117 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S+ GGG FGP P + +K + LA+ A+ Sbjct: 118 GGRKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVSAAK 177 Query: 120 SNDIMVIDNLVSK---ECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 V++ KT+ V + L + D N +L+ RNI ++ Sbjct: 178 DA--FVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLK 235 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + +N+YDIL KL + +A++ L R+ Sbjct: 236 MLTPRTLNLYDILDARKLFFTPAAVDYLNSRY 267 >gi|183221346|ref|YP_001839342.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911439|ref|YP_001962994.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226730680|sp|B0SAF3|RL4_LEPBA RecName: Full=50S ribosomal protein L4 gi|226730681|sp|B0SSH6|RL4_LEPBP RecName: Full=50S ribosomal protein L4 gi|167776115|gb|ABZ94416.1| 50S Ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779768|gb|ABZ98066.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 211 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ N +G + + ++FA G + ++ ++ R G +K RSEV G Sbjct: 1 MKARKYNKEGVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S F GGG GP P L + V+ A+ L+ K N Sbjct: 61 IKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKKKAVLSILNKKAEEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 I +I+++ TK + + +D+ N + + ++ + + RNI N+ + Sbjct: 121 RIAIIEDVEPSSYSTKSIYNILKNMDIAEKGNVGFVVAGE-NQFLKKSTRNIENLKYVNS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + DIL + LV+S+SA++ L+ ++ Sbjct: 180 KRVVCRDILYNNNLVISESALKELQAQY 207 >gi|251772491|gb|EES53057.1| Ribosomal protein L4 [Leptospirillum ferrodiazotrophum] Length = 210 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V + DG+ IS+ ++ GI+ + + R G S +K R EV+ G Sbjct: 1 MNIPVLSSDGKSSSTISIDSEVTQDSFNNGIVHEITTMELAGMRAGTSSTKTRGEVSGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTGRAR S Q+RGG FGP P + P K ALR AL + N Sbjct: 61 KKPYRQKGTGRARQGSSRAPQWRGGAIIFGPRPRNYFYKQPSKKVLKALREALLVRVSEN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +I NL S+ KTK V + N LII +LD N L++RNIP + +LP Sbjct: 121 KVSIIPNLESETLKTKKFVDLLKKYHTNPGYQNILII-SEELDENTWLSSRNIPGLTILP 179 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ +++++ + E L+ K Sbjct: 180 STAVTALYMVFTDVVLVAEDSREWLQQLLK 209 >gi|261415818|ref|YP_003249501.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372274|gb|ACX75019.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326623|gb|ADL25824.1| ribosomal protein L4 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 206 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + G+ K I + +F + + + ++ R G +++K + EV+ Sbjct: 1 MASAKLFAATGDFKNDIQL-PALFDQEVNKVCMYLHIKAILNNNRQGTAQTKSKGEVSGG 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR + + + G KA GP + KKV+ +A AL++K Sbjct: 60 GQKPWKQKGTGRARSGQNTSAVWVRGAKAHGPKSHDYFEKVNKKVKKIAFYSALANKASE 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V + L KTK L++ + N L I + D+N L++ NIP V Sbjct: 120 GKVSVFEALSFSAPKTKDLLSVLAKSGIEQRNVLFIV-SEKDQNLYLSSNNIPWCRCARV 178 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 +N YD++R + +V+S++A+ LE Sbjct: 179 ADVNTYDVVRANNVVISQAALAELE 203 >gi|218961432|ref|YP_001741207.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans] gi|167730089|emb|CAO81001.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans] Length = 211 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 5/210 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVA 58 M+ N+ GE G + + E IF + +L V+ +R G + K RS A Sbjct: 1 MLTAKRYNMQGELIGEVDLPEGIFEVDVNAPKILLNEVVTMFLANQRQGTVQKKNRSMTA 60 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 + K++ QKGTG AR ++ GGKAF P +P+ + LAL+ AL+D+ Sbjct: 61 GSTRKLFRQKGTGNARVGTRRSPIRVHGGKAFAIYPKDWYRKIPRTKKRLALKVALTDRA 120 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLL 176 IM++DNL ++ TK V + LI+ + N+P + Sbjct: 121 REGRIMIVDNLSFEKPNTKLAVELLNKIIPEKGYKLIVTDGHHIPTV-KSFANLPEVMTD 179 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N Y++L+ S ++++ A++ +E+ F Sbjct: 180 RADSLNAYEVLKSSYIIMTDEALKKVEEVF 209 >gi|171913925|ref|ZP_02929395.1| 50S ribosomal protein L4 [Verrucomicrobium spinosum DSM 4136] Length = 202 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 8/203 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQ--GILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + +V +D + + V ++ ++ L + +R G + +K R+EVA Sbjct: 1 MASNVLTIDAAKQANVQV------VEGRKGAHALHDTIIAYRANRRQGNASTKSRNEVAG 54 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119 +G K++ QKGTGRAR S + GGG +GP P +P++V++LA R AL+ + Sbjct: 55 SGKKLWKQKGTGRARMGSARSPIWSGGGVVWGPKPRDYSKKIPRQVKTLAFRTALTSRIN 114 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 D++V + + KTK V L + +++ D + RN+ N+ L+ Sbjct: 115 DGDVLVTADFQVSDGKTKSFVAAIAGLTDARKVLVLADSFDELTFRSGRNVQNVQLMAAT 174 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N +L K+++S +A+E + Sbjct: 175 DVNAEHLLAYDKIIISGAALETI 197 >gi|116327225|ref|YP_796945.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116327265|ref|YP_796985.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332121|ref|YP_801839.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280149|sp|Q04PT9|RL4_LEPBJ RecName: Full=50S ribosomal protein L4 gi|116119969|gb|ABJ78012.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120009|gb|ABJ78052.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125810|gb|ABJ77081.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 211 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RSEV G Sbjct: 1 MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S + GGG GP + + K++ A+ L+ K ++ Sbjct: 61 KKPWSQKGTGHARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSKLKHKAVLSILNKKAQAS 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII---DGCQLDRNFQLAARNIPNINLLPV 178 + VI++L KE TK + F+ ++L N +I + D + + RNIP + + Sbjct: 121 AVKVIEDLDPKEYSTKSFDSIFKNMNLRNTGVIGFLVQGESD-FVKKSVRNIPTVKYINS 179 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + I+ DIL LV++++A+ + Sbjct: 180 KRISCRDILYNRNLVITEAALNEM 203 >gi|323454046|gb|EGB09917.1| hypothetical protein AURANDRAFT_14958 [Aureococcus anophagefferens] Length = 178 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 2/177 (1%) Query: 22 DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 D+FA + +L +RWQ ++R SK R EV+ + K+Y QKGTG AR S Sbjct: 1 DVFAAPLRVDVLHDCVRWQRNKRRQVHRASKRRGEVSGSTRKLYRQKGTGNARAGSLRSP 60 Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 +GG KA GP L KK R LALR ALS K + V +L + KT+ + Sbjct: 61 LRKGGAKAHGPAARDFKTELNKKQRRLALRVALSAKLREGRLTVAASLDTP-PKTRVVAD 119 Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198 R + +AL +D L +F+ A RN+P +++LP G NVY IL+ LVLS+SA Sbjct: 120 ALRGRGIRSALFVDD-DLAEDFKTACRNVPLVDVLPQVGANVYSILQRDHLVLSESA 175 >gi|301168457|emb|CBW28047.1| 50S ribosomal protein L4 [Bacteriovorax marinus SJ] Length = 205 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 2/206 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N E G +S + + + ++ +V++ +R G + +K R +V+ Sbjct: 1 MTDITVLNGKFETSGKLSTNVSLTSEDINVPVVHQVVKATLAGRRQGNACTKTRGQVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G+K + QKGTGRAR S S GGG FGP P L KKV + A++ L+DK + Sbjct: 61 GAKPFKQKGTGRARQGSTRASIMVGGGTTFGPKPRSYDQKLNKKVAAKAIQSVLADKLQA 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+ S KTK L T + L AL++ + D AA+N+ L V+G Sbjct: 121 GKLTVVDSFDSN-GKTKELYTTLNSKGLLPALVV-AEKKDSLAIRAAKNLQYGKGLAVEG 178 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +VY+ ++ LV+ K+A+EAL R Sbjct: 179 FSVYEAVKYENLVIEKAALEALLGRL 204 >gi|198282638|ref|YP_002218959.1| 50S ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666574|ref|YP_002424831.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270] gi|226730604|sp|B7J468|RL4_ACIF2 RecName: Full=50S ribosomal protein L4 gi|226730605|sp|B5ELY0|RL4_ACIF5 RecName: Full=50S ribosomal protein L4 gi|198247159|gb|ACH82752.1| ribosomal protein L4/L1e [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518787|gb|ACK79373.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 205 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 1/205 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + I +++ +F + + +L +V+ Q R + K R+ V G Sbjct: 1 MQVQSLEVTTGKSSEIEIADGVFGVPYNEALLHQVVVAQMAGMRSANAVQKNRAAVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +RGGG+AF + KK+ + A+R L++ Sbjct: 61 RKPWKQKGTGRARAGSIRSPIWRGGGRAFPGGNENYTQKVNKKMWAGAMRTVLAELLRQG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + +I E +++ N L++ G ++ N L RN P + + Q + Sbjct: 121 RLQIIQQEDFGEPRSRLGRDWLSRAGGDNVLLVMG-EVPLNLFLGLRNFPRVGIAGWQDV 179 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 D+L+ +++L A L + + Sbjct: 180 GPADLLQYGRVLLDVEAAARLGEVY 204 >gi|170591979|ref|XP_001900747.1| ribosomal protein L4/L1 family protein [Brugia malayi] gi|158591899|gb|EDP30502.1| ribosomal protein L4/L1 family protein [Brugia malayi] Length = 303 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 7/212 (3%) Query: 1 MIELSVRNLDGEDKG---VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 + + V L +++ +IS+ DIF P+ +L R + WQ + + +K + E+ Sbjct: 53 IPQAWVTTLARKEESRMDLISLHPDIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEM 112 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSD 116 G K + QK TGR S FR GG A G P + LP +R L A++ Sbjct: 113 PGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCIAVTI 172 Query: 117 KFCSNDIMVIDNLVS---KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 K ND++++DN S + + + + R S I D ++ N IP Sbjct: 173 KHAQNDLVIVDNFASLPNADAQFMHDLADSRNWGYSILFINDSSEVPENMAKVCDEIPTF 232 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 N++PV GIN + +++ ++ S +A++ + R Sbjct: 233 NVMPVYGINCFSLVKHDTVIFSLAALQLFQSR 264 >gi|145354841|ref|XP_001421683.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus lucimarinus CCE9901] gi|144581921|gb|ABO99976.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus lucimarinus CCE9901] Length = 251 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 6/203 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + DG ++ + +G++ + + R G + + +SEV G K Sbjct: 39 IDAVTFDGAKSSAATLELKTARAEVARGLVHKYVVMVRQNARRGTASTLTKSEVRGGGRK 98 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG AR S GGG +FGP P + KK R LA+ AL + + Sbjct: 99 PFKQKGTGNARAGSSRTPLKPGGGVSFGPKPRDWSIKMNKKERRLAMATALQSAASA--M 156 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +V+D++ T A + S + + N +ARNI + V Sbjct: 157 IVVDDISGNISAPGTNAFNKSLMAWGVGASEKAYVITKDANENVAKSARNIERVVQTDVS 216 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +NVYDIL K+++ SA+ + Sbjct: 217 HLNVYDILNADKVIVEASALAHI 239 >gi|33519659|ref|NP_878491.1| 50S ribosomal protein L4 [Candidatus Blochmannia floridanus] gi|46577208|sp|Q7VQE7|RL4_BLOFL RecName: Full=50S ribosomal protein L4 gi|33517322|emb|CAD83707.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia floridanus] Length = 212 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 1/191 (0%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 +SVS+ +F ++ +++ R G K RS+V+ + K + QKGTGRAR Sbjct: 21 VSVSDKVFGYPFNPALIHQIVSSYLINCRQGSKSQKSRSDVSGSNKKPWRQKGTGRARSG 80 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S +R GG F P + KK+ A++ LS C N + +I++L ++ KT Sbjct: 81 SVKSPIWRSGGVTFASKPKKYDQKINKKMYKGAMKSILSKLVCDNRLFLIEDLFLEKPKT 140 Query: 137 KYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 L+ + + + + LI+ +D+N LA+ N+ + + + I+ ++ + +L Sbjct: 141 NLLLKKLKNITSDRSVLIVTDNVIDKNLILASSNLHTVKIYNLNSIDPVSLINFNITLLF 200 Query: 196 KSAIEALEDRF 206 ++ +E+LE R Sbjct: 201 RTIVESLELRL 211 >gi|149195352|ref|ZP_01872438.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2] gi|149134484|gb|EDM22974.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2] Length = 195 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 11/202 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + ++ ++ + ED + P L ++ +R G + +K R EV+ G Sbjct: 1 MSVEIKKIN-------QLPEDFQGINPHN--LYLYVKAYLANQRAGTAHTKTRGEVSGGG 51 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG GRAR S F GGG A GP L KK + +AL++AL++K + Sbjct: 52 KKPFRQKGLGRARQGSIRAPHFVGGGVAHGPRNERDWSQKLNKKQKRVALKYALNEKAEN 111 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I V+ + + KTK V + + LI+ +D LA RNIPN+ ++ + Sbjct: 112 EKIYVVPEVKIESGKTKDAVKWLNNFNERDYLIVVD-NMDEKTYLAFRNIPNVYIITPEE 170 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y ++ ++A + + Sbjct: 171 LNAYYASVFKSIIFDEAAFDKV 192 >gi|255079010|ref|XP_002503085.1| predicted protein [Micromonas sp. RCC299] gi|226518351|gb|ACO64343.1| predicted protein [Micromonas sp. RCC299] Length = 276 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++S + DG G ++ + +G++ + + R G + + +SEV G Sbjct: 62 AQVSKVSFDGASAGTATLDVKVAKPDVAKGLVHKYVVMVRQNARRGTASTLTKSEVRGGG 121 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S GGG FGP P + KK R LA+ A+ ++ Sbjct: 122 RKPFKQKGTGNARAGSSRTPLKPGGGVVFGPKPKDWSIKMNKKERRLAMATAIQSAAAAS 181 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++V+D+L KTK + T ++ + I L+ RN+ + ++ Sbjct: 182 SMIVVDSLAGAAPKTKAMATALKSWGVAEGEKAYIITKDAPEGVTLSTRNMARVVQTDIK 241 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V+ +SA++ + D + Sbjct: 242 HLNVYDVLNADKVVVEESALQYINDFY 268 >gi|126654433|ref|ZP_01726173.1| 50S ribosomal protein L4 [Bacillus sp. B14905] gi|126589120|gb|EAZ83317.1| 50S ribosomal protein L4 [Bacillus sp. B14905] Length = 142 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 61/139 (43%), Positives = 78/139 (56%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S Q+RGGG FGP P + LPKKVR LAL+ ALS K + +V+D Sbjct: 3 KGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLD 62 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L KTK + L L + LD N L+ARNIP + +L GINV D+L Sbjct: 63 ALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLL 122 Query: 188 RCSKLVLSKSAIEALEDRF 206 K+V +KSA+E +E+ Sbjct: 123 GHEKVVFTKSAVEKVEEVL 141 >gi|79317138|ref|NP_001030985.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|79317147|ref|NP_001030986.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34 [Arabidopsis thaliana] gi|222423413|dbj|BAH19678.1| AT1G07320 [Arabidopsis thaliana] gi|332189987|gb|AEE28108.1| 50S ribosomal protein L4 [Arabidopsis thaliana] gi|332189988|gb|AEE28109.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 278 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS-LALRHALSDKFCS 120 K Y QK TG AR S+ GGG FGP P + +K + S Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK + + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|148693200|gb|EDL25147.1| mitochondrial ribosomal protein L4, isoform CRA_a [Mus musculus] Length = 300 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 12/213 (5%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSE-VAYTGSK 63 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+E + T S Sbjct: 68 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAELLNITHSN 127 Query: 64 MYVQKGTGRAR---HSSKSV--SQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDK 117 Q + R + + GG A GP P + LP KVR+L L+ AL+ K Sbjct: 128 TLCQPSSKFLRSQTSGDTNTSYATVPAGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVK 187 Query: 118 FCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIPNI 173 +D+ ++D+L +YL + ++R S+ L++D ++ +N A + + Sbjct: 188 LMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLNSF 246 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 247 NLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 279 >gi|325921482|ref|ZP_08183337.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865] gi|325548029|gb|EGD19028.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865] Length = 203 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + + ++ +V+ R G K RSEVA T Sbjct: 3 MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 59 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 117 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M+++ + KT+ L+ + + LD+ +I + + L+ARN+P + + VQG+ Sbjct: 118 RLMIVEAFDVEATKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 177 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 178 DPVALVGADTVVITADAVKKIEEWL 202 >gi|30680078|ref|NP_849604.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|332189986|gb|AEE28107.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 280 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS-LALRHALSDKFCS 120 K Y QK TG AR S+ GGG FGP P + +K + S Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK + + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|18390754|ref|NP_563786.1| RPL4; poly(U) binding / structural constituent of ribosome [Arabidopsis thaliana] gi|21542429|sp|O50061|RK4_ARATH RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis thaliana] gi|21436209|gb|AAM51392.1| unknown protein [Arabidopsis thaliana] gi|110741117|dbj|BAE98652.1| hypothetical protein [Arabidopsis thaliana] gi|332189985|gb|AEE28106.1| 50S ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS-LALRHALSDKFCS 120 K Y QK TG AR S+ GGG FGP P + +K + S Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK + + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|2791998|emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana] gi|2792000|emb|CAA74894.1| ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS-LALRHALSDKFCS 120 K Y QK TG AR S+ GGG FGP P + +K + S Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK L+ + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDLLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|285017321|ref|YP_003375032.1| 50s ribosomal protein l4 [Xanthomonas albilineans GPE PC73] gi|283472539|emb|CBA15044.1| probable 50s ribosomal protein l4 [Xanthomonas albilineans] Length = 201 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + ++ +V+ R G K RSEV T Sbjct: 1 MELVITGSNNK----VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVNGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+D + KTK L+ + + LD+ +I + + L+ARNIP + + VQG+ Sbjct: 116 RLKVVDAFDLEASKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNIPYVEVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLVGADTVVITADAVKKVEEWL 200 >gi|262341014|ref|YP_003283869.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272351|gb|ACY40259.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 209 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL + ++ G + E+IF + + ++ +R G KSK R E++ + Sbjct: 1 MELRILDIKGNFTDKKVEFDENIFFKRSYDHSVYLEIKRFLSSQRQGTHKSKERGELSGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG +R FRGGG+ FGP P + L K+ +S + + K Sbjct: 61 TRKLHRQKGTGGSRKGDIKNPIFRGGGRVFGPRPRKYLTKLNKRTKSSVRKFIIEQKLIQ 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N I +I+++ KTK+ + ++ L N L++ + ++N L++RN+ LL V Sbjct: 121 NQIKIIEDIEFNIPKTKFFLGILNSIKLKNKKLLMVLGEENKNLYLSSRNLKCFKLLNVN 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 ++ + +L +V ++++I+ + + Sbjct: 181 ELDCFSLLNFPSIVFTENSIKKIHEFL 207 >gi|21230365|ref|NP_636282.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769641|ref|YP_244403.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. 8004] gi|188992853|ref|YP_001904863.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. B100] gi|46577276|sp|Q8PC48|RL4_XANCP RecName: Full=50S ribosomal protein L4 gi|81304404|sp|Q4URE0|RL4_XANC8 RecName: Full=50S ribosomal protein L4 gi|226731444|sp|B0RU81|RL4_XANCB RecName: Full=50S ribosomal protein L4 gi|21111921|gb|AAM40206.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574973|gb|AAY50383.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris str. 8004] gi|167734613|emb|CAP52823.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris] Length = 201 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D+ + KTK L+ + + +D+ +I + + L+ARN+P + + VQG+ Sbjct: 116 RLMIVDSFDIEATKTKGLIEKLKGMDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200 >gi|21537296|gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana] Length = 282 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 L + + +GE G + + ++ R + KR G + + R EV G Sbjct: 52 ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS-LALRHALSDKFCS 120 K Y QK TG AR S+ GGG FGP P + +K + S Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171 Query: 121 NDIMVIDNL--VSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLL 176 +V++ ++ KTK + + L + +D N ++RNI + +L Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKPMFLMIDVDENVAKSSRNIGTLRML 231 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N++DIL KLVL+ +A+E L R+ Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261 >gi|312069025|ref|XP_003137489.1| hypothetical protein LOAG_01903 [Loa loa] gi|307767347|gb|EFO26581.1| hypothetical protein LOAG_01903 [Loa loa] Length = 746 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 7/212 (3%) Query: 1 MIELSVRNLDGED---KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 + + V L + +IS+ IF P+ +L R + WQ + + +K + E+ Sbjct: 495 IPQAWVTTLAKKQESRVDLISLHPCIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEM 554 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSD 116 G K + QK TGR S FR GG A G P + LP +R L A++ Sbjct: 555 PGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCVAVTI 614 Query: 117 KFCSNDIMVIDNLV---SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 K ND++++D+ S E + + + R S I + ++ N +IP Sbjct: 615 KHAQNDLVIVDDFASLPSDEAQFVHDLADSRNWGYSVLFINESSEVSGNLAKVCDDIPTF 674 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 N++PV GIN + +++ +V S +A+ + R Sbjct: 675 NVMPVYGINCFSLVKHDTVVFSLAALRLFQSR 706 >gi|262277095|ref|ZP_06054888.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114] gi|262224198|gb|EEY74657.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114] Length = 209 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++++ ++DG++ G + S+ +F +KP++ I+ +V+ WQ R +K R EV + Sbjct: 1 MKINEISIDGKNVGSLEASDKVFKVKPRKDIIQQVIDWQQNRMFKKTGHTKSRGEVKGSR 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119 K+ QKG+G ARH + + F GGG A GP L KKVR L L HALS K Sbjct: 61 KKIVQQKGSGGARHGNITAPVFVGGGIAHGPRHRGNYAVKKLNKKVRKLGLVHALSVKAK 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 S+ I + + KTK + + +AL I + F + +NIPN L Sbjct: 121 SDQIAIFNEPKISGLKTKNFKDFLKNIKSKSALFIHHKDAPKEFVRSIKNIPNSKKLEDV 180 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 G NVYD+++ K++ +K + +A+E+R Sbjct: 181 GTNVYDLIKYEKVLFTKESFKAIEERL 207 >gi|289665138|ref|ZP_06486719.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669345|ref|ZP_06490420.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 201 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D + KTK L+ + + LD+ +I + + L+ARN+P + + VQG+ Sbjct: 116 RLMIVDAFDLEATKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200 >gi|325916488|ref|ZP_08178757.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937] gi|325537277|gb|EGD09004.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937] Length = 203 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + + ++ +V+ R G K RSEVA T Sbjct: 3 MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 59 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 117 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D + KT+ L+ + + LD+ +I + + L+ARN+P + + VQG+ Sbjct: 118 RLMIVDAFDVETTKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 177 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 178 DPVALVGADTVVITADAVKKVEEWL 202 >gi|84625043|ref|YP_452415.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879274|ref|YP_202221.6| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|188575491|ref|YP_001912420.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae PXO99A] gi|109893661|sp|Q2NZY6|RL4_XANOM RecName: Full=50S ribosomal protein L4 gi|226731445|sp|B2SQR1|RL4_XANOP RecName: Full=50S ribosomal protein L4 gi|84368983|dbj|BAE70141.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519943|gb|ACD57888.1| ribosomal protein L4/L1 family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 201 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVSE +F + + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D + KTK L+ + + LD+ +I + + L+ARN+P + + VQG+ Sbjct: 116 RLMIVDAFDLEATKTKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200 >gi|319787924|ref|YP_004147399.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1] gi|317466436|gb|ADV28168.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1] Length = 201 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ + +SVS+D+F + ++ +V+ R G R+EV+ T Sbjct: 1 MELTITGSANK----LSVSDDVFGRDFSEDLVHQVVVAYRNAGRAGTKAQLTRAEVSGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ LS+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFAQKVNRKMYRAAISSILSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + V+++ KTK LV + +L +I N L+ARN+P + + VQG+ Sbjct: 116 RLKVVESFDIDAPKTKGLVEKLAGYELGKRPLIVTEDASENLFLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ ++++ A++ +E+ Sbjct: 176 DPVALVGADSVLITADAVKKVEEWL 200 >gi|21241738|ref|NP_641320.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str. 306] gi|78046556|ref|YP_362731.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294627844|ref|ZP_06706423.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294663997|ref|ZP_06729411.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325925386|ref|ZP_08186788.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118] gi|46577277|sp|Q8PNS3|RL4_XANAC RecName: Full=50S ribosomal protein L4 gi|109893660|sp|Q3BWY2|RL4_XANC5 RecName: Full=50S ribosomal protein L4 gi|21107109|gb|AAM35856.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str. 306] gi|78034986|emb|CAJ22631.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292597758|gb|EFF41916.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606226|gb|EFF49463.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544264|gb|EGD15645.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118] Length = 201 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D + KTK L+ + + L++ +I + + L+ARN+P + + VQG+ Sbjct: 116 RLMIVDAFDLEATKTKGLIEKLKGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200 >gi|323507973|emb|CBQ67844.1| related to 50S ribosomal protein L4 [Sporisorium reilianum] Length = 442 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 55/261 (21%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L + K + +S +F ++ ++ + + +R G + +KGRS+V + Sbjct: 128 MSQLRKGSSAASAKSYVPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGS 187 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G+AR + S RGG A GP P LP++VR LALR ALS K+ Sbjct: 188 MRKLRPQKGSGQARLGTMSNPMLRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQ 247 Query: 121 NDIMVIDNLVSKECK--TKYLVTRFRALDLSNALIIDGCQLD------------------ 160 D+ V+DN T L + S+AL + + Sbjct: 248 GDLHVVDNFDWIAPPSSTGPLSRLLSSKGWSDALFLTAPRDPQPSIRSLIKDARPSSSDP 307 Query: 161 --------------RNFQLAARNIPNINLLPVQGI------NV---------------YD 185 RNF LA+ N+P + L+ + + NV Y+ Sbjct: 308 IYQEQQRLDHNQAIRNFVLASNNLPRVELIELDALTEEYRQNVARTSDDKKKPGELHAYE 367 Query: 186 ILRCSKLVLSKSAIEALEDRF 206 +LR K++ A+E LE++ Sbjct: 368 VLRRHKVICDLGAVEWLEEKL 388 >gi|115938906|ref|XP_001186449.1| PREDICTED: similar to mitochondrial ribosomal protein L4 (L4mt) [Strongylocentrotus purpuratus] Length = 560 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 1/154 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ +L+ G++ + +FA P+ IL R + WQ KRI +K+K R+EV G K Sbjct: 97 TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 156 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGGKA GP P + LP+K+R+ LR AL+ K+ +D+ Sbjct: 157 WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 216 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157 ++D+L YL + +++ Sbjct: 217 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVDV 250 >gi|115712808|ref|XP_792959.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 486 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 1/154 (0%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 ++ +L+ G++ + +FA P+ IL R + WQ KRI +K+K R+EV G K Sbjct: 23 TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 82 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S + GGGKA GP P + LP+K+R+ LR AL+ K+ +D+ Sbjct: 83 WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 142 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157 ++D+L YL + +++ Sbjct: 143 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVDV 176 >gi|240047260|ref|YP_002960648.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae HRC/581] gi|239984832|emb|CAT04822.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae] Length = 220 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 3/191 (1%) Query: 19 VSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++++IF L+ P + + ++ +R K K R+EV+ TG K + QKGTG+AR S Sbjct: 31 LNQEIFGLEVPHSQAIFDTILYERASRRRATHKVKSRAEVSGTGKKPWKQKGTGKARAGS 90 Query: 78 KSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + F GGG+AFGP + KKVR LA ALS I+V D+ + T Sbjct: 91 RRSPIFVGGGRAFGPTNNKNYAIKVNKKVRRLAFVSALSQLAHEKQILV-DDFAMDKIST 149 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K LV + + L+ A + D N ++ARN+ N+ + + V ++ L++S+ Sbjct: 150 KELVKKLASYQLAKARFVLIASSDENLFISARNLQNVVVTKPSSLLVEQLIGADVLIISQ 209 Query: 197 SAIEALEDRFK 207 I +E RFK Sbjct: 210 KEINEIEGRFK 220 >gi|190572945|ref|YP_001970790.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia K279a] gi|194364535|ref|YP_002027145.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia R551-3] gi|254523850|ref|ZP_05135905.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14] gi|226730728|sp|B4SKW4|RL4_STRM5 RecName: Full=50S ribosomal protein L4 gi|226730729|sp|B2FQ46|RL4_STRMK RecName: Full=50S ribosomal protein L4 gi|190010867|emb|CAQ44476.1| putative 50S ribosomal protein L4 [Stenotrophomonas maltophilia K279a] gi|194347339|gb|ACF50462.1| ribosomal protein L4/L1e [Stenotrophomonas maltophilia R551-3] gi|219721441|gb|EED39966.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14] Length = 201 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVS+ +F + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K A+ LS+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKQYRAAMCAILSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + ++++ + TK L+ + L++ +I + + L+ARN+P + + VQG+ Sbjct: 116 RLTIVESFDVEVTNTKGLIAKLAGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVSLVGADTVVITADAVKKVEEWL 200 >gi|108804973|ref|YP_644910.1| 50S ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941] gi|122381570|sp|Q1AU30|RL4_RUBXD RecName: Full=50S ribosomal protein L4 gi|108766216|gb|ABG05098.1| LSU ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941] Length = 211 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 2/200 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + + + F +P+Q ++ R + + +R + ++ RSEVA + Sbjct: 1 MAQAQVFDARTGRRSEMELKGPRFETEPKQHVIHRAVVAELEARRRWTASTRERSEVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI--IGVHALPKKVRSLALRHALSDKF 118 G+K+Y QKGTGRAR GGG GP P + +K A ALS K Sbjct: 61 GAKLYRQKGTGRARAGDIKSPLRHGGGTWGGPKPKGPRYGKKINRKEARAAFDGALSAKA 120 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V+D L + TK + + +++ +R L+ RN+P + ++ Sbjct: 121 AEGRLYVLDALDFERPSTKRAKELLGQMGVEGPVLLVLDGEEREAALSFRNLPEVTVVGP 180 Query: 179 QGINVYDILRCSKLVLSKSA 198 +G VY++LR ++V S++A Sbjct: 181 RGYGVYELLRAREVVFSRAA 200 >gi|212529840|ref|XP_002145077.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224] gi|210074475|gb|EEA28562.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224] Length = 298 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 5/190 (2%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 S D + ++ +L R + ++ + R G + +K R +V +G K+ QKGTG AR Sbjct: 85 EYSPDHLLVPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGD 144 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 K RGGG A GP P LPKK+ A R ALS ++ ++V+DNL E + Sbjct: 145 KKSPIRRGGGVAHGPHPRDFSTDLPKKMYDKAWRIALSYRYTRGSLLVVDNLKMPENSSP 204 Query: 138 YLVTRFRALDLSNA----LIIDGCQLDRNFQLA-ARNIPNINLLPVQGINVYDILRCSKL 192 + RF ++ ++D + A A + +L ++V DIL+ KL Sbjct: 205 WFWKRFFEVNAWGKGHGGCTFVKDRMDEDLFGAIAEFQEHGRILDRPDLDVKDILKNGKL 264 Query: 193 VLSKSAIEAL 202 ++ K A++ + Sbjct: 265 IIEKKALDKI 274 >gi|166710832|ref|ZP_02242039.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 201 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL + + + +SVSE +F + + ++ +V+ R G K RSEVA T Sbjct: 1 MELVITGSNNK----VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG F P + +K+ A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +M++D + KTK L+ + + L + +I + + L+ARN+P + + VQG+ Sbjct: 116 RLMIVDAFDLEATKTKDLIEKLKGLHVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 + ++ +V++ A++ +E+ Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200 >gi|182412050|ref|YP_001817116.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1] gi|177839264|gb|ACB73516.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1] Length = 210 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 88/204 (43%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L+V + D + F + V+ + R G +K R EV G Sbjct: 1 MKLTVFSPDATKSTEQDFTLPTFEGDKGLQAVKEVIVAINANNRQGTHSTKTRGEVRGGG 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S + GGG FGP P + KV+ LA AL D+ + Sbjct: 61 KKPWRQKGTGRARAGSIRSPLWGGGGVVFGPKPRDYSKKINAKVKQLAFSRALFDRASAG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 +I VI+ SK KTK + +++ A+RN+ + L + Sbjct: 121 EIAVIEAFDSKATKTKAFNQILGRIAPKGKVLLVDAPFAAEAARASRNLERVTLQEAAKL 180 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N D+ + K+++S A+EA+ R Sbjct: 181 NTLDLAQYQKIIVSSKALEAIIAR 204 >gi|302853159|ref|XP_002958096.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis] gi|300256564|gb|EFJ40827.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis] Length = 357 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 32/236 (13%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E V ++D + G++ + F + + IL RV+R+ + + G K+K R EV+ G Sbjct: 85 EAVVYSMDEQPLGLVRLPGVAFNVPVRLDILHRVVRYLRAKWQQGTHKAKRRGEVSGGGR 144 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K QK TGRAR S ++GGG + P+P H LP+ VR L +R A++ K Sbjct: 145 KPRPQKKTGRARQGSIRSPLWKGGGVSHAPLPRSHAHKLPRSVRLLGMRCAITAKIHEGR 204 Query: 123 IMVIDNL------------------------VSKECKTKYLVTRFRALDLSNA----LII 154 V+DN + L R + + L++ Sbjct: 205 FFVVDNFLRVPGPSGSSSAGSASNSVNALGEQVRVRDYSELKQRLARVTAGSFGSTWLLV 264 Query: 155 DGCQLDRNFQLAARN-IPN---INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 D + R+ + R + + +L + + VY +L+ +LV++++A+E+L ++ Sbjct: 265 DSGEAGRDGGVQLRKWLKGRMVMEVLAPEQLTVYHVLKYHRLVVTRAALESLAEQL 320 >gi|109893662|sp|Q5GWT5|RL4_XANOR RecName: Full=50S ribosomal protein L4 Length = 200 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 1/191 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +SVSE +F + + ++ +V+ R G K RSEVA T K QKG ARH Sbjct: 10 KVSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARH 68 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 + + F GGG F P + +K+ A+ S+ +M++D + K Sbjct: 69 GALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLEATK 128 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK L+ + + LD+ +I + + L+ARN+P + + VQG++ ++ +V++ Sbjct: 129 TKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTVVIT 188 Query: 196 KSAIEALEDRF 206 A++ +E+ Sbjct: 189 ADAVKKVEEWL 199 >gi|32307492|gb|AAP79151.1| ribosomal protein rpL4 [Bigelowiella natans] Length = 335 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 9/211 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V+N DG+ G +S + + +G++ R L + R G + +K +SEV G Sbjct: 112 VKLEVKNFDGQVVGSDDMSLKVARPETAKGLVHRYLMYARNSMRAGTASTKTKSEVRGGG 171 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QK TG AR S+ GGG FGP P + +K R +A+ AL S+ Sbjct: 172 KKPYQQKKTGNARQGSRRTPLKPGGGIIFGPKPRDWSVDMNQKERRIAMATALQS--ASS 229 Query: 122 DIMVIDNLV--SKECKTKYLVTRFRALDLS----NALIIDGCQLDRNFQLAARNIPNINL 175 D++++++L + KTK + + L++ Q RN L+ARNI + + Sbjct: 230 DVILVEDLDGKFESPKTKNMADFLDRVGAKPSEEKVLLVVEGQK-RNALLSARNIDKLKI 288 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + D+L K+++ K A E +++ F Sbjct: 289 NKPTSLRIIDVLGADKIIMEKKAFETMKNIF 319 >gi|315453734|ref|YP_004074004.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179] gi|315132786|emb|CBY83414.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179] Length = 202 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V N E G + + F + ++ L +++ + R +++K R V+ G Sbjct: 1 MKAKVLNQHCEQVGELEL-PAHFK-EIKEHNLYLYVKYYRAQARANSAQTKNRGAVSGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG GRAR S + F GGG + G + KK + LAL +AL K + Sbjct: 59 KKPWNQKGGGRARAGSITSPIFVGGGVSHGATNERNYDLKINKKQKKLALEYALGQKALA 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++D + KTK + + L++ + NF LA RN+PN L+ Sbjct: 119 EKLLIVDKVDISSKKTKDAHAFLQKFGFRDVLLVTHALEEYNF-LAFRNLPNCYLIEASE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y + + +V+ KSA +A Sbjct: 178 LNAYLVATYNAVVIEKSAFDAF 199 >gi|294055220|ref|YP_003548878.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221] gi|293614553|gb|ADE54708.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221] Length = 212 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 4/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSE-DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L V DG + F L +V+ R G + +K R+EV + Sbjct: 1 MKLKVYTADGTKSEEKDFATFPTFEGDKGVAALRQVVIAHRANARQGTASTKTRAEVRGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKG+G AR + V R GG A GP P + K++SLA + AL ++ Sbjct: 61 GKKLFRQKGSGTARQGDRRVPHQRHGGVAHGPKPRDYSQKINSKMKSLAFQRALFERASD 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + VI+ L KE KTK + ++ + LIID + N LAARNI ++L Sbjct: 121 GGLAVIEALEVKEPKTKLFNSVLNSVLPERGRVLIIDD-NFESNAALAARNIDGVSLAEA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDR 205 ++ D+++ +++S+ IE + R Sbjct: 180 CNLSTLDVVQYRNIIVSEKGIETILAR 206 >gi|225561687|gb|EEH09967.1| 50S ribosomal protein L4 [Ajellomyces capsulatus G186AR] Length = 286 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 6/197 (3%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + S L ++ IL R + ++ + R G + +K R +V +G K+ QKGTG Sbjct: 75 EPLKFLEYSHQHLLLPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTG 134 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLV 130 RAR K RGGG A GP P LPKKV LA R ALS ++ ++++ DN+ Sbjct: 135 RARLGDKKSPMLRGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNIT 194 Query: 131 SK-ECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 E +L F +L+I + +R F+ A+ + +L + ++V D Sbjct: 195 FPQEVSPHWLTDVFEKNQWGKCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKD 254 Query: 186 ILRCSKLVLSKSAIEAL 202 +L +L++ K+A++ + Sbjct: 255 LLETGRLIVEKTALDRM 271 >gi|257458707|ref|ZP_05623831.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268] gi|257443896|gb|EEV19015.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268] Length = 204 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++SV N E I + + L ++ R + +K R+EV+ Sbjct: 1 MSKVSVLNEKLEKASEIEIPAKF--SEVNSHNLYLYVKSYLASLRANTANAKTRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL A+++K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYEQKVNKKQKRLALEFAINEKAN 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I + D+L K KTK + L + +ALI+ +LD LA RN+ N ++ Sbjct: 119 EGKIFIFDDLELKSGKTKDAANFIKKLGVRDALIV-KNELDAQTLLAYRNLKNCYVIDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y I +V K+A E++ Sbjct: 178 EVNAYLIAVYGSVVFEKAAFESI 200 >gi|223997036|ref|XP_002288191.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335] gi|220975299|gb|EED93627.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335] Length = 199 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 15 GVISVSEDIFALKP-QQGILARVLRWQSWRKR----IGCSKSKGRSEVAYTGSKMYVQKG 69 G I +S F P + IL R + +Q ++R G +++K EV+ +G K+ QKG Sbjct: 2 GSIHLSAHTFGCDPIRVDILHRCVVYQRNKRRGKRNAG-ARTKTIHEVSGSGRKVRNQKG 60 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 G AR + +RGG KA GP L KKVR + +RHALS K +++V+ Sbjct: 61 GGVARAGHSRPAHWRGGAKAHGPKGSVQDYTTKLNKKVRKMGVRHALSQKLLEGNLIVMG 120 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +L +K KTK L ++ L+ N ++A+ N+ + ++ G NVYD+L Sbjct: 121 DLNAKSHKTKELEEALGRFGIAGKKGTVYGGLNVNLKVASGNLFKVKVMNQLGTNVYDLL 180 Query: 188 RCSKLVLSKSAIEALEDRF 206 + KLVLS SA++ALE+R Sbjct: 181 KHEKLVLSLSAVKALEERL 199 >gi|322378778|ref|ZP_08053207.1| 50S ribosomal protein L4 [Helicobacter suis HS1] gi|322380627|ref|ZP_08054779.1| 50S ribosomal protein L4 [Helicobacter suis HS5] gi|321146949|gb|EFX41697.1| 50S ribosomal protein L4 [Helicobacter suis HS5] gi|321148808|gb|EFX43279.1| 50S ribosomal protein L4 [Helicobacter suis HS1] Length = 206 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V + G+ G + + + L +++ R +KSK R EV+ G Sbjct: 1 MKARVLDQQGQATGTLDLPARY--QEINAHNLYLFVKYYRALARANTAKSKNRGEVSGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG GRAR S + F GGG + G + KK + LAL +AL+ K + Sbjct: 59 RKPWSQKGGGRARAGSITSPVFVGGGVSHGATNERNYHLKINKKQKKLALEYALAQKALA 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++V++N+ KTK + L + L+I LD N LA RN+PN L+ Sbjct: 119 DKLVVMENIQIPSKKTKDAHAFLKNLGFRDVLLIQHA-LDENSVLAFRNLPNCFLVESSE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y + S +++ +SA EAL Sbjct: 178 VNGYIVAAFSAVIMERSAFEAL 199 >gi|156086798|ref|XP_001610806.1| 50S ribosomal protein L4 [Babesia bovis T2Bo] gi|154798059|gb|EDO07238.1| 50S ribosomal protein L4, putative [Babesia bovis] Length = 364 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 13/214 (6%) Query: 1 MIELSVRNLDGE-----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 ++EL + +G+ + V DIF L + IL R + R + G S+ Sbjct: 10 ILELPLYIFEGDNGFPTPRRTHQVPNDIFGLPLRPDILHRCYMFYR-RAKAGYSEDMQLY 68 Query: 56 --EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 E + K Q+ TG+AR K G A P LP++V L+ Sbjct: 69 KWEWPGSTRKWRKQQKTGKARIGWKKSPGKYLGVFAHPIRPGDQRTKLPRRVLWTGLKIM 128 Query: 114 LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALII--DGCQLDRNFQLAAR 168 LS KF + I ++D+ + K KTKY V R + + ++AL++ + NF+ A Sbjct: 129 LSAKFAQSQINLVDSFLMKSHKTKYAVCNLRRILGNNCNSALLVFCGNSDSNENFRWATA 188 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 NIP + L V+G+NVY++L+ +LV+++ A++ L Sbjct: 189 NIPAVRLETVEGLNVYNLLKYRQLVITEMALKKL 222 >gi|240275291|gb|EER38805.1| 50S ribosomal protein L4 [Ajellomyces capsulatus H143] gi|325091126|gb|EGC44436.1| 50S ribosomal protein [Ajellomyces capsulatus H88] Length = 286 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 6/197 (3%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + S L ++ IL R + ++ + R G + +K R +V +G K+ QKGTG Sbjct: 75 EPLKFLEYSHQHLLLPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTG 134 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLV 130 RAR K RGGG A GP P LPKKV LA R ALS ++ ++++ DN+ Sbjct: 135 RARLGDKKSPMLRGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNIT 194 Query: 131 SK-ECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 E +L F +L+I + +R F+ A+ + +L + ++V D Sbjct: 195 FPQEVSPHWLTDVFEKNQWGKCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKD 254 Query: 186 ILRCSKLVLSKSAIEAL 202 +L +L++ K+A++ + Sbjct: 255 LLETGRLIVEKTALDRM 271 >gi|255086631|ref|XP_002509282.1| predicted protein [Micromonas sp. RCC299] gi|226524560|gb|ACO70540.1| predicted protein [Micromonas sp. RCC299] Length = 190 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 6/193 (3%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 +++ F + + I RV+ WQ ++R +K+ RSEV+ T K QKG GRAR Sbjct: 2 TVTLPGRHFDVPLRVDIAHRVVVWQRSKRRGNYAKTLTRSEVSGTTRKARAQKGAGRARV 61 Query: 76 SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK-E 133 + Q RGGG A GP L ++VR L+ ALS K I+V+D+L E Sbjct: 62 GTLRAPQMRGGGVAHGPSGMRNWNTKLQRRVRRAGLQVALSAKAAEGRIVVLDSLHRGVE 121 Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 KT++L L + L N + A+ N+P++ ++ G+NVYD+LR L Sbjct: 122 PKTQWLDGALDTLLGAQKLPTTHS----NAKRASLNLPHVQVMDQFGLNVYDVLRHRSLA 177 Query: 194 LSKSAIEALEDRF 206 +++ A++AL R Sbjct: 178 ITRDALDALVARL 190 >gi|32491293|ref|NP_871547.1| 50S ribosomal protein L4 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|46577256|sp|Q8D211|RL4_WIGBR RecName: Full=50S ribosomal protein L4 gi|25166500|dbj|BAC24690.1| rplD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 201 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 1/176 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + +SE IF K + ++ +V+R KR G S K RSEV +G K + QKGTGRAR Sbjct: 11 KVKISEKIFGQKFNESLVHQVVRSYRITKRQGTSAQKSRSEVIGSGKKPWRQKGTGRARA 70 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +R GG F H + KK+ AL+ S+ N I+++ N K K Sbjct: 71 GSVKSPIWRSGGVTFAKKTRDFKHKINKKMYKNALKSIFSELCRQNRILIVKNFFVKSEK 130 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 TK L + ++L N LII +D+N L++RN+ +++ IN +++ K Sbjct: 131 TKLLKKKLNEMNLENVLII-SKTIDKNLVLSSRNLNKVHVCFPININPINLISFKK 185 >gi|222823104|ref|YP_002574677.1| 50S ribosomal protein L4 [Campylobacter lari RM2100] gi|254803723|sp|B9KEE1|RL4_CAMLR RecName: Full=50S ribosomal protein L4 gi|222538325|gb|ACM63426.1| 50S ribosomal protein L4 [Campylobacter lari RM2100] Length = 204 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N E + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVTVLNDKFEKASELDLPAKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYFQKVNKKQKRLALERALEDKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + +D+L + KTK + L L + LI+ LD LA RN+ N ++ V Sbjct: 119 KNALFSVDSLSIESGKTKDANAVIKKLGLKDVLIVKDL-LDEKTLLAFRNLANCYVVDVN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ K+A+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKAALESI 200 >gi|303283616|ref|XP_003061099.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457450|gb|EEH54749.1| predicted protein [Micromonas pusilla CCMP1545] Length = 254 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 6/207 (2%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + DG K ++ +G++ + + R G + + +SEV G K Sbjct: 42 VEKVSFDGATKSTADLTLKTARADVAKGLVHKYVVMVRQNARRGTASTLTKSEVRGGGRK 101 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTG AR S GGG +FGP P + KK R LA+ A+ + + Sbjct: 102 PFNQKGTGNARAGSIRSPLKPGGGVSFGPKPKDWSIKMNKKERRLAMATAIQS--AAGSM 159 Query: 124 MVIDNL--VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +V+D+L KTK + +A + + +L+ RN+ + + Sbjct: 160 IVVDDLGANVSVAKTKTMANALKAWGVEEGEKAYVITKDASDAVKLSTRNMAKVVQSDIS 219 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +NVYD+L K+V+ +SA++ + D + Sbjct: 220 HLNVYDVLNADKVVVEESALKYINDFY 246 >gi|255321772|ref|ZP_05362927.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277] gi|255301252|gb|EET80514.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277] Length = 204 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E + + D + L ++ R + +K R+ V+ Sbjct: 1 MSKVCVLNEKFEKASELDLPADY--AQINPHNLYLYVKSYLSGMRSNSAHTKTRAFVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL++K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNKKQKRLALEFALNEKAN 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I +D++ KTK AL+L +AL++ LD N LA RN+ N L+ Sbjct: 119 AGKIFAVDSIEIASGKTKDAAKVISALNLRDALVVKDL-LDDNTLLAFRNLSNCYLIDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 IN Y + +V+ K+A+E + Sbjct: 178 EINAYLVATYGAVVIEKAALETI 200 >gi|323454820|gb|EGB10689.1| hypothetical protein AURANDRAFT_59906 [Aureococcus anophagefferens] Length = 243 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 8/211 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 E+ V++ DG D G ++S + ++ R + R G + +K R+EV G Sbjct: 33 AEVPVKSFDGADAGTATLSLKTTKGEKDMYVVHRKYVNERRNARQGTASTKTRAEVRGGG 92 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S GGG FGP P + + +K LA+ A+ +K Sbjct: 93 RKPFKQKGTGRARQGSTRTPLKPGGGVVFGPKPKDWANKKINRKEAELAIGIAIQNKAA- 151 Query: 121 NDIMVIDNLV---SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINL 175 V+D+L KTK + + L L ++ D + +A N+PN L Sbjct: 152 -RATVVDSLAGKFVGAPKTKSVTSMLSGLGLDADEKTVLVYDTEDDVLEKSAANLPNCEL 210 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I V D+L ++++ +K A + + +R+ Sbjct: 211 RLQDEITVSDMLWANQVLFTKPAFDWVNERY 241 >gi|71003832|ref|XP_756582.1| hypothetical protein UM00435.1 [Ustilago maydis 521] gi|46096113|gb|EAK81346.1| hypothetical protein UM00435.1 [Ustilago maydis 521] Length = 438 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 55/245 (22%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S +F ++ ++ + + +R G + +KGRS+V + K+ QKG+G+AR Sbjct: 147 VPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGSMRKLRPQKGSGQARLG 206 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK- 135 + S RGG A GP P LP++VR LALR ALS K+ +++V++NL Sbjct: 207 TMSNPILRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQGNLLVVENLNWTAPPS 266 Query: 136 -TKYLVTRFRALDLSNALIIDGCQLD--------------------------------RN 162 T L + S+AL + + RN Sbjct: 267 STGPLARLLGSKGWSDALFLTAPRDPQPSMRSLIKDARPSSSDPIYDEHQKLSHQQAIRN 326 Query: 163 FQLAARNIPNINLLP---------------------VQGINVYDILRCSKLVLSKSAIEA 201 F LA+ N+P L+ ++ Y++LR K++ A+E Sbjct: 327 FVLASNNLPRAELIELDSLTEEYRDNIAKTSDDKKKPGELHAYEVLRRHKVICDLGAVEW 386 Query: 202 LEDRF 206 LE++ Sbjct: 387 LEEKL 391 >gi|119478686|ref|XP_001259414.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181] gi|119407568|gb|EAW17517.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181] Length = 291 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E ++ + ++ IL R + ++ R G + +K R +V +G K+Y QKGTG Sbjct: 78 EPLRIVEYPRSHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGRKLYAQKGTG 137 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR K RGGG AFGP P +LP+K+ A R ALS ++ +++IDN + Sbjct: 138 RARVGDKKSPIRRGGGVAFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEIS 197 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T +L+ ++ + +I QL+ R + + +L + ++V Sbjct: 198 IPEGATPHLIKEIFKVNCWGREFGRSTLITD-QLNEGLFETVREVGEHAKILNRKDVDVK 256 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +LV+ K A++ + Sbjct: 257 DLLETGRLVIEKQALDRI 274 >gi|295698648|ref|YP_003603303.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola USDA] gi|291157110|gb|ADD79555.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola USDA] Length = 202 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 7/207 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL++ + + I +S+ IF ++ ++ +V++ R G K RS+V+ + Sbjct: 1 MELTILDTHKK----IQISDRIFNVRLNHSLVHQVIKSFLSNLRTGTKSQKNRSQVSGSN 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTG AR S +R GG AF + KK+ A+R S+ N Sbjct: 57 KKPWKQKGTGHARAGSVKSPIWRSGGMAFATNFRSYKKKINKKMYKKAMRCIFSELIREN 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++NL KTK + + LII ++++ L++RN+ IN+ V Sbjct: 117 RLVIVENLFLDRIKTKLFKKMIDDICRNRDKILIIT-KKINQFLILSSRNLHKINICEVS 175 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 IN ++++ ++ + AI+ +E+ Sbjct: 176 EINPVNLIKNRTIISTVEAIKKVEESL 202 >gi|261189683|ref|XP_002621252.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] gi|239591488|gb|EEQ74069.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] gi|239612983|gb|EEQ89970.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ER-3] gi|327352159|gb|EGE81016.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ATCC 18188] Length = 263 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 6/197 (3%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + S L ++ IL R + ++ + R G + +K R ++ +G K+ QKGTG Sbjct: 52 EPLKFLEYSHKHLLLPLRRDILHRAVVYEGDKTRQGTASTKWRDDIRGSGRKIRPQKGTG 111 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLV 130 RAR K RGGG A GP P LPKKV LA R ALS ++ ++++ DN+ Sbjct: 112 RARLGDKKSPMLRGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNIT 171 Query: 131 SK-ECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 E +L F +L+I + +R F+ A+ + +L + ++V D Sbjct: 172 FPREVSPYWLTDVFEKNQWGKGFGRSLMITEVKKERLFRAVAQIGQHARVLDREDVDVKD 231 Query: 186 ILRCSKLVLSKSAIEAL 202 +L +L++ K+A++ + Sbjct: 232 LLETGRLIVEKTALDRM 248 >gi|83584315|gb|ABC24932.1| plastid 50S ribosomal protein L4 family [Prototheca wickerhamii] Length = 228 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 71/138 (51%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + + N G G ++ D+F + IL RV+RWQ ++ G K+K R+EV G K Sbjct: 71 VPLLNHRGRSVGSFTLGGDVFNTVVRPDILHRVVRWQLAARQQGTHKTKTRTEVRGGGRK 130 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 QKG G +R S Q+RGGG A GPVP L K +R L LR ALS K + Sbjct: 131 PRPQKGGGVSRQGSIRAPQWRGGGVAHGPVPRSHAIKLLKSIRRLGLRSALSAKAREGRL 190 Query: 124 MVIDNLVSKECKTKYLVT 141 +++D L E KT+ L Sbjct: 191 VIVDTLRLPEAKTRALAD 208 >gi|315042063|ref|XP_003170408.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893] gi|311345442|gb|EFR04645.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893] Length = 298 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 78 VTLYDFPSMEPIQYLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 137 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKGTGRAR K RGGG A GP P LP+K+ A R ALS ++ Sbjct: 138 KVRPQKGTGRARLGDKKSPMLRGGGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQ 197 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++VI DN+ + + +L+ + + +I + +R F+ A L Sbjct: 198 LIVINDNISLERGSSAHLLHDIIQTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARAL 257 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 258 DRADVDVKDLLETGRLIIEKQALDKM 283 >gi|154148894|ref|YP_001405698.1| 50S ribosomal protein L4 [Campylobacter hominis ATCC BAA-381] gi|166234650|sp|A7HZK7|RL4_CAMHC RecName: Full=50S ribosomal protein L4 gi|153804903|gb|ABS51910.1| ribosomal protein L4/L1 family [Campylobacter hominis ATCC BAA-381] Length = 204 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E + + + L ++ R + +KGRSEV+ Sbjct: 1 MSKVKVLNEKLEKASELELPANF--ADVNPHNLYLYVKSYLASLRANTANTKGRSEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL++K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNNRNYFQKVNKKQKRLALEFALNEKAQ 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 ++ I +D+L KTK + L + +ALI+ +LD LA RN+ N ++ + Sbjct: 119 NDKIFAVDSLEISSGKTKDAAKFIKNLGVRDALIV-KNELDSATLLAYRNLNNCYVIDIN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + S +++ SA++++ Sbjct: 178 ELNAYLVAVYSAVIIETSALQSI 200 >gi|326472625|gb|EGD96634.1| 50S ribosomal protein L4 [Trichophyton tonsurans CBS 112818] gi|326483564|gb|EGE07574.1| 50S ribosomal protein L4 [Trichophyton equinum CBS 127.97] Length = 298 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 78 VTLYDFPSMEPIQYLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 137 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKGTGRAR K RGGG A GP P LP+K+ A R ALS ++ Sbjct: 138 KIRPQKGTGRARLGDKKSPMLRGGGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQ 197 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++V+ DN+ + + +L+ + + +I + +R F+ A L Sbjct: 198 LIVVNDNISLERGASVHLLHDIFQTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARAL 257 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 258 DRADVDVKDLLETGRLIIEKQALDKM 283 >gi|255635335|gb|ACU18021.1| unknown [Glycine max] Length = 224 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 69/121 (57%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 + V N EDKG + + D+F L ++ I+ RV+RWQ +++ G +K SEV+ TG K Sbjct: 102 IPVTNFHNEDKGYMVLPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 161 Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRARH S QFRGG GP P + KKVR L L+ ALS + + Sbjct: 162 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKL 221 Query: 124 M 124 + Sbjct: 222 L 222 >gi|313616904|gb|EFR89557.1| ribosomal protein L4/L1 family [Listeria innocua FSL S4-378] Length = 131 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 73/126 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIXSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIMVI 126 ++V+ Sbjct: 121 EKLVVL 126 >gi|327292594|ref|XP_003230995.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892] gi|326466801|gb|EGD92254.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892] Length = 298 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 78 VTLYDFPSMEPIQYLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 137 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKGTGRAR K RGGG A GP P LP+K+ A R ALS ++ Sbjct: 138 KIRPQKGTGRARLGDKKSPMLRGGGVAHGPHPRDFSTELPRKIYDKAWRTALSYRYQRGQ 197 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++V+ DN+ + + +L+ + + +I + +R F+ A L Sbjct: 198 LIVVNDNISLERGASAHLLHDIFQTHGWGREFGRSSLITEVKKERLFRAVAEIGREARAL 257 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 258 DRADVDVKDLLETGRLIIEKQALDKM 283 >gi|115387319|ref|XP_001211165.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195249|gb|EAU36949.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 245 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + + ++ +L R + ++ R G + +K R++V + K+Y QKGTG Sbjct: 31 EPLRFVEYPQSHLLMPLRKDLLHRAVVYEGDMTRQGTASTKWRADVHGSNRKLYPQKGTG 90 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR K +GGG AFGP P LP+K+ A R ALS ++ +++IDN + Sbjct: 91 RARVGDKKSPIRKGGGVAFGPHPRDFSTELPRKIYDQAWRTALSYRYKRGQLIIIDNEIS 150 Query: 131 SKECKTKYLVTRFRALDL-----SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T +L+ ++ + +I QLD R + + +L ++V Sbjct: 151 IPEDATPHLIQDIFKINCWGREYGRSTLITD-QLDEGLFETVRQVGEHAKILDRGDVDVK 209 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +L++ K+A++ + Sbjct: 210 DLLETGRLIIEKAALDRM 227 >gi|242762080|ref|XP_002340306.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500] gi|218723502|gb|EED22919.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500] Length = 299 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 5/190 (2%) Query: 18 SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 S D + ++ +L R + ++ + R G + +K R +V +G K+ QKGTG AR Sbjct: 86 EYSPDHLLVPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGD 145 Query: 78 KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137 K RGGG A GP P LP+KV A R ALS ++ ++V+DN+ + + + Sbjct: 146 KKSPIRRGGGVAHGPHPRDFSTDLPRKVYDKAWRIALSYRYTRGQLLVVDNIQTPDNSSP 205 Query: 138 YLVTRFRALDLSNA----LIIDGCQLDRNFQLA-ARNIPNINLLPVQGINVYDILRCSKL 192 + RF ++L ++D + A + + +L ++V DIL+ K+ Sbjct: 206 WFWKRFFEVNLWGKNHGGCTFVKDRMDEDLFGAISEFKQHARILDRPDLDVKDILKNGKM 265 Query: 193 VLSKSAIEAL 202 ++ + A+ + Sbjct: 266 IIEQKALNKI 275 >gi|302497341|ref|XP_003010671.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371] gi|291174214|gb|EFE30031.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371] Length = 259 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 39 VTLYDFPSMEPIQYLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 98 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKGTGRAR K RGGG A GP P LP+K+ A R ALS ++ Sbjct: 99 KIRPQKGTGRARLGDKKSPMLRGGGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQ 158 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++V+ DN+ + + +L+ + + +I + +R F+ A L Sbjct: 159 LIVVNDNISLERGASVHLLHDIFQTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARAL 218 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 219 DRADVDVKDLLETGRLIIEKQALDKM 244 >gi|146181037|ref|XP_001022027.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila] gi|146144303|gb|EAS01782.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila SB210] Length = 358 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 1/188 (0%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + + DIF + ++ I+ + W+ R I +K + V+ +G K Y QKGTG+AR Sbjct: 90 TVDLDHDIFNVPLRRDIVHSYVLWRQNRDEIKTHITKTKGTVSGSGKKPYAQKGTGKARM 149 Query: 76 SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 +K + GGKA G P I + L KK+R AL+ LS K + +I+ E K Sbjct: 150 GNKRAPGRKKGGKAHGAKPRILRYPLNKKIRLQALKVVLSAKLAEGKLRIIETEQVDEPK 209 Query: 136 TKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 T+ + +D S LI+ Q+D NF+LA +NI + ++V +L ++ + Sbjct: 210 TRAIAKMLEKMDKRSRILIVHPYQIDTNFELAHQNIQKLQSCYPNELSVLKVLTNDRVFI 269 Query: 195 SKSAIEAL 202 + A+ L Sbjct: 270 TLEALRQL 277 >gi|145249828|ref|XP_001401253.1| 50S ribosomal protein L4 [Aspergillus niger CBS 513.88] gi|134081937|emb|CAK97203.1| unnamed protein product [Aspergillus niger] Length = 289 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 2 IELSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++ ++ + E + + + ++ IL R + ++ R G + +K R +V + Sbjct: 65 VKATLYSFPSMEPLRFVEYPRNHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGS 124 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTGRAR K RGGG AFGP P LP+K+ A R ALS ++ Sbjct: 125 GRKLHAQKGTGRARVGDKKSPIRRGGGVAFGPHPRDFSTELPQKIYDQAWRIALSYRYKR 184 Query: 121 NDIMVIDN-LVSKECKTKYLVTRFRALDL-----SNALIIDGCQLDRNFQLAARNIPNIN 174 ++++DN + E T ++V ++ + +I + F+ + + Sbjct: 185 GQLIIVDNEIALPEGATPHIVEEIFKVNCWGRHYGRSTLITDQPNEELFETVRQAGEHAK 244 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L + ++V D+L +L++ K A++ + Sbjct: 245 ILDRRDVDVKDLLETGRLIIEKQALDRI 272 >gi|223038484|ref|ZP_03608778.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267] gi|222880341|gb|EEF15428.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267] Length = 204 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E + + + + L ++ R + +K R+ V+ Sbjct: 1 MSKVCVLNEKFEKASELDLPANY--AQINPHNLYLYVKSYLSGMRSNSAHTKTRAFVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL++K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNKKQKRLALEFALNEKAN 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + I +D++ KTK AL+L +AL++ LD N LA RN+ N L+ Sbjct: 119 AGKIFAVDSIEIASGKTKDAAKVISALNLRDALVVKDL-LDDNTLLAFRNLSNCYLIDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 IN Y + +V+ K+A+E++ Sbjct: 178 EINAYLVATYGAIVIEKAALESI 200 >gi|320103618|ref|YP_004179209.1| 50S ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644] gi|319750900|gb|ADV62660.1| ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644] Length = 256 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ + V + +G G ++ F ++ +L V+ +R+G ++GR++VA + Sbjct: 1 MVTVPVYDREGRKVGEETIDPADFGGVVKKQLLHDVVLMHLAARRVGTVNTRGRADVAGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K++ QKGTG AR SK ++ +GGG AF + LPK+ A+R A+ KF Sbjct: 61 GKKLFRQKGTGNARVGSKRTNKRKGGGVAFARRNRNYRYTLPKRAVRAAIRMAVLSKFLD 120 Query: 121 NDIMVIDNLVS--KECKTKYLVTRFRALDLS-------------------------NALI 153 + +++++L KT+ + RAL +++ Sbjct: 121 HQALIVEDLPINRDAPKTRDVAALLRALPRPDLNGEAVQPTEGEPKSHALKRTLDHRSVL 180 Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 I D AARN+ + + PV N YDIL+ L+L++ A+EAL+ R K Sbjct: 181 IGLPAHDPIAWRAARNVEGVMVAPVAEFNTYDILKQRYLLLTRPALEALKQRAK 234 >gi|313606523|gb|EFR83351.1| ribosomal protein L4/L1 family [Listeria monocytogenes FSL F2-208] Length = 131 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 71/124 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 NDIM 124 ++ Sbjct: 121 EKLV 124 >gi|225158912|ref|ZP_03725226.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2] gi|224802530|gb|EEG20788.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2] Length = 214 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 4/208 (1%) Query: 2 IELSVRNLDGEDKGVISVSE-DIF---ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 ++L V + DG + F + L + +R G +K R EV Sbjct: 1 MKLKVFSSDGTTSREQEFAGLPTFEGDNAEKGMQALKETIVAIRANQRQGTRSTKTRGEV 60 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 G K + QKGTGRAR S + GGG FGP P + KV++LA AL ++ Sbjct: 61 RGGGKKPWRQKGTGRARAGSTRSPLWVGGGVVFGPRPRDFSKKVNAKVKALAFSRALFER 120 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +I+ ID + KTK + + +I AARNI ++L Sbjct: 121 ASAGEILAIDAWQVAQAKTKAINEIIGRIAPKGRTLIVDATFSAEAARAARNIERVSLQE 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205 +NV D+ + ++++S A+E + R Sbjct: 181 AANLNVVDLAQYKQIIVSTQALEKIIAR 208 >gi|323649930|gb|ADX97051.1| mitochondrial 39S ribosomal protein l4 [Perca flavescens] Length = 209 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 D E G+ + D+FA+ P+ IL V WQ KRI + +K RSEV G K + QKG Sbjct: 82 DSEPLGLAQLHPDVFAVHPRLDILHEVETWQRNYKRISHASTKIRSEVRGGGRKPWKQKG 141 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRARH S ++GGG A GP P + LP KVR L+ ALS K + ++D+ Sbjct: 142 SGRARHGSIRSPLWKGGGVANGPRGPTSYFYMLPMKVRVQGLKVALSSKMAQQYLHIVDS 201 Query: 129 LVSKECKT 136 L Sbjct: 202 LNIPSPDP 209 >gi|161511519|ref|NP_852834.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)] gi|3914747|sp|O52333|RL4_MYCGA RecName: Full=50S ribosomal protein L4 gi|2766504|gb|AAB95388.1| ribosomal protein L4 [Mycoplasma gallisepticum] gi|284811865|gb|AAP56402.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)] gi|284930295|gb|ADC30234.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(high)] gi|284931062|gb|ADC31000.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. F] Length = 209 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 106/208 (50%), Gaps = 2/208 (0%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + +L G+ + I +++ + + + + + ++ + G + + EV+ Sbjct: 1 MSKIKLFDLSGKVQEEIELNQKLLVSEVHKQAIFDAILAENLSQIQGTHSTLKKGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TGRAR S + GGG AFGP P + KKV SLA + A++ K Sbjct: 61 GKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPNRNYKIKVNKKVSSLAFKSAITSKVN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 +N+ + ++D++ + TK + + L ++ ++I + + N + ++ N+PN++ Sbjct: 121 NNEFLGLVDSIKQDKPSTKAIAKLLKELKVNKKVLIVAFEKNENLEKSSANLPNVSYKLW 180 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 ++V D++ + ++ KSAI +R Sbjct: 181 NQVSVKDLIDANCVLAQKSAINNWVERL 208 >gi|303314421|ref|XP_003067219.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106887|gb|EER25074.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037504|gb|EFW19441.1| 50S ribosomal protein L4 [Coccidioides posadasii str. Silveira] Length = 298 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R G + +K RSEV + K+ QKGTGRAR K RG Sbjct: 101 LPLRRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRG 160 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKT-KYLVTRF 143 GG A GP P LP+K+ A R ALS ++ ++++ DN+ + T +L F Sbjct: 161 GGVAHGPHPRDFSTELPRKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIF 220 Query: 144 RALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + L+I + ++ F+ A +L + ++V D+L +L++ K A+ Sbjct: 221 DTHNWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMAL 280 Query: 200 EAL 202 + + Sbjct: 281 DRM 283 >gi|216408930|gb|ACJ73148.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLACRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|216408856|gb|ACJ73111.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDAKAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|70997242|ref|XP_753373.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293] gi|66851009|gb|EAL91335.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293] gi|159126901|gb|EDP52017.1| 50S ribosomal protein L4 [Aspergillus fumigatus A1163] Length = 252 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E V+ + + ++ IL R + ++ R G + +K R +V +G K+Y QKGTG Sbjct: 39 EPLRVVEYPRNHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGKKLYAQKGTG 98 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR K RGGG AFGP P +LP+K+ A R ALS ++ +++IDN + Sbjct: 99 RARVGDKKSPIRRGGGVAFGPHPRDFATSLPRKIYDQAWRIALSYRYKRGQLIIIDNEIS 158 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T +L+ ++ + +I QL+ R + + +L + ++V Sbjct: 159 IPEGATPHLIKEIFKVNCWGREFGRSTLITD-QLNEGLFETVREVGEHAKILNRKDVDVK 217 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +LV+ K A++ + Sbjct: 218 DLLETGRLVIEKQALDRI 235 >gi|302851169|ref|XP_002957109.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f. nagariensis] gi|300257516|gb|EFJ41763.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f. nagariensis] Length = 246 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 8/210 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + DG +KG ++ + A + +G++ R L R G + +K RSEV G Sbjct: 31 ATIPYKAADGSEKGNQQLALKV-AEESAKGLVHRYLVLVQQNARQGTASTKTRSEVRGGG 89 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S F GGG FGP P ++ KK + LAL AL Sbjct: 90 KKPYAQKGTGNARRGSSVSPLFPGGGVTFGPKPKDWKISMNKKEKRLALATALQSAAA-- 147 Query: 122 DIMVIDNLV--SKECKTKYLVTRFRALD---LSNALIIDGCQLDRNFQLAARNIPNINLL 176 D++V+++L KE KTK +V L +S +++ + LA RNI + Sbjct: 148 DMIVVESLDGKLKETKTKEMVALLEKLGADVMSRKVLLITKDARPDLHLAGRNIAKLTFN 207 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +NV DIL +++ A+ ++ Sbjct: 208 TASSLNVLDILHADHIIVEDEALAHIQATL 237 >gi|206895650|ref|YP_002247333.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM 5265] gi|206738267|gb|ACI17345.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM 5265] Length = 208 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 2/206 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L V +++G + V+E++ A + +L + KR G + +K + EVA + Sbjct: 1 MQLPVFDVNGAEVAYEDVNENLVATPVRGRLLHLNVVRVLSGKRHGTASTKKQGEVAGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QK TGRARH +R G AFGP P + KK LA+ + + Sbjct: 61 RKPWPQKHTGRARHGYMRSPIWRKGAVAFGPKPRDWTKDVNKKQVKLAMASCFGYRLKNG 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++++ID KT+ R+ L + + ++ + A +N+ N+ +PV+ Sbjct: 121 ELLLIDANSFN-GKTREFKAFLRSKQLDEKRVTVVSLAGEQGVRRACQNLENVYYVPVEK 179 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 +N YD+L+ +++++SA ++ + Sbjct: 180 VNAYDLLKGDAVIMTQSAWVRAQEVW 205 >gi|157415928|ref|YP_001483184.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116] gi|172047270|sp|A8FP20|RL4_CAMJ8 RecName: Full=50S ribosomal protein L4 gi|157386892|gb|ABV53207.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116] gi|216408654|gb|ACJ73010.1| ribosomal protein L4 [Campylobacter jejuni] gi|307748566|gb|ADN91836.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni M1] gi|315931326|gb|EFV10295.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 204 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|297621719|ref|YP_003709856.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044] gi|297377020|gb|ADI38850.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044] Length = 227 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 20/223 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M EL NL+G++ G + + I ++ + R + +KGRSEV +T Sbjct: 1 MTELKKYNLEGKETGSVEANAKITESSIHSQLIKEYIVAIRKNARQWSANTKGRSEVKHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 K + QKGTGRAR S QFRGGG FGP P H + KK + A+R L + Sbjct: 61 TKKPHRQKGTGRARQGSLVAPQFRGGGVVFGPKPKFDQHVRINKKEKRSAIRFLLGEMMR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-------------------DGCQLD 160 N ++V++N + + KTK L + +L ++ C Sbjct: 121 ENRMIVLENAMMDKPKTKTLAAFIKKANLGKRVLFLAEGKHEEIQTAHKTVAVSVKCNDH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 NF+ + NIP + +N YD++ +V++++A+E + Sbjct: 181 ENFRKSLNNIPKTQFALAKNVNGYDLMLADNIVVTEAALEEIN 223 >gi|216408928|gb|ACJ73147.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|216408896|gb|ACJ73131.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408898|gb|ACJ73132.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408900|gb|ACJ73133.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK T + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|216408922|gb|ACJ73144.1| ribosomal protein L4 [Campylobacter coli] gi|216408924|gb|ACJ73145.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ + Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDIS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y I + +++ KSA+E++ Sbjct: 178 EVNAYLISVFNAVIIEKSALESI 200 >gi|153952215|ref|YP_001398985.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. doylei 269.97] gi|166234651|sp|A7H655|RL4_CAMJD RecName: Full=50S ribosomal protein L4 gi|152939661|gb|ABS44402.1| ribosomal protein L4 [Campylobacter jejuni subsp. doylei 269.97] Length = 204 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LA AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLAFERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + + LI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDVLIVKDL-LDEKTLLAYRNLANCYVVDVA 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|261749469|ref|YP_003257155.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497562|gb|ACX84012.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 210 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +EL + ++ G + +E F+ K + ++ +R G KSK R E++ + Sbjct: 1 MELEILDIKGNSTNRKVLFNEKFFSKKSYDHPIYLEVKRYLSAQRQGTHKSKERGEISGS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K++ QKGTG +R FRGGG+ FGP P + K ++LA ++ + K + Sbjct: 61 RRKLHRQKGTGGSRKGDIKNPLFRGGGRVFGPTPRRYFMKINKLTKNLAKKNIIEHKLKT 120 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + +I++ K+ KTK ++ ++L L +L+I + DRN L+ARN+ N LL Sbjct: 121 KKVKIIEDFQLKKPKTKLVLNILKSLQLMNEKSLMIV-EKADRNLHLSARNLKNFQLLNA 179 Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203 + +N Y +L S ++LS+++++ +E Sbjct: 180 EELNSYSLLNSSYVILSENSVKRIE 204 >gi|121612191|ref|YP_001001350.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|148926797|ref|ZP_01810476.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8486] gi|167006239|ref|ZP_02271997.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|166234652|sp|A1W1V9|RL4_CAMJJ RecName: Full=50S ribosomal protein L4 gi|121504148|gb|EAQ72729.2| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176] gi|145844522|gb|EDK21629.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8486] gi|216408666|gb|ACJ73016.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408668|gb|ACJ73017.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408670|gb|ACJ73018.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408672|gb|ACJ73019.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408674|gb|ACJ73020.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408676|gb|ACJ73021.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408678|gb|ACJ73022.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408680|gb|ACJ73023.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408682|gb|ACJ73024.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408834|gb|ACJ73100.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408836|gb|ACJ73101.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408838|gb|ACJ73102.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408840|gb|ACJ73103.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408858|gb|ACJ73112.1| ribosomal protein L4 [Campylobacter coli] gi|216408860|gb|ACJ73113.1| ribosomal protein L4 [Campylobacter coli] gi|216408862|gb|ACJ73114.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408888|gb|ACJ73127.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408890|gb|ACJ73128.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408918|gb|ACJ73142.1| ribosomal protein L4 [Campylobacter coli] gi|216408920|gb|ACJ73143.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|315125091|ref|YP_004067095.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|216408818|gb|ACJ73092.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408926|gb|ACJ73146.1| ribosomal protein L4 [Campylobacter coli] gi|315018813|gb|ADT66906.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 204 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK T + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|161611307|ref|YP_007412.2| 50S ribosomal protein L4 [Candidatus Protochlamydia amoebophila UWE25] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L NL G++ G +++ + ++ ++ + R + +K R+EV +T Sbjct: 1 MATLKKYNLAGKEIGQVNIDDTWLNVEANGQMIKDYIVALRANARQWSASTKTRAEVKHT 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 K + QKG GRARH S Q+RGGG+AFGP P H + KK R A+R LS+K Sbjct: 61 TKKAHPQKGQGRARHGSTVAPQYRGGGRAFGPRPKFDQHVRINKKERKAAIRFLLSEKLK 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------------------QLD 160 N + +I++ KTK L R DL ++ G Sbjct: 121 ENKVWLIEDTAMDAPKTKTLAQFLRGFDLRGRVLFLGETTFTDVETEGKVQRVSISTDKH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +F + RN+P N + IN YD++ ++VL++SA+ L Sbjct: 181 NHFVKSMRNLPRANFMLASNINGYDVMIAREIVLTESALNELNQWL 226 >gi|216408866|gb|ACJ73116.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKNANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|119174603|ref|XP_001239657.1| hypothetical protein CIMG_09278 [Coccidioides immitis RS] Length = 261 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R G + +K RSEV + K+ QKGTGRAR K RG Sbjct: 64 LPLRRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRG 123 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKT-KYLVTRF 143 GG A GP P LP+K+ A R ALS ++ ++++ DN+ + T +L F Sbjct: 124 GGVAHGPHPRDFSTELPQKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIF 183 Query: 144 RALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + L+I + ++ F+ A +L + ++V D+L +L++ K A+ Sbjct: 184 DTHNWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMAL 243 Query: 200 EAL 202 + + Sbjct: 244 DRM 246 >gi|216408820|gb|ACJ73093.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408822|gb|ACJ73094.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408824|gb|ACJ73095.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408830|gb|ACJ73098.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408842|gb|ACJ73104.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408912|gb|ACJ73139.1| ribosomal protein L4 [Campylobacter coli] gi|216408914|gb|ACJ73140.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|108863178|gb|ABG22154.1| 50S ribosomal protein L4 [Campylobacter jejuni] gi|216408844|gb|ACJ73105.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408846|gb|ACJ73106.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408848|gb|ACJ73107.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408850|gb|ACJ73108.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408852|gb|ACJ73109.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408854|gb|ACJ73110.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNIWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|302662647|ref|XP_003022975.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517] gi|291186950|gb|EFE42357.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517] Length = 259 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 39 VTLYDFPSMEPIQYLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 98 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKGTGRAR K R GG A GP P LP+K+ A R ALS ++ Sbjct: 99 KIRPQKGTGRARLGDKKSPMLREGGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQ 158 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++V+ DN+ + + +L+ + + +I + +R F+ A L Sbjct: 159 LIVVNDNISLERGASVHLLHDIFQTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARAL 218 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 219 DRADVDVKDLLETGRLIIEKKALDKM 244 >gi|216408686|gb|ACJ73026.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408688|gb|ACJ73027.1| ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERSYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|330850883|ref|YP_004376633.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580] gi|328835703|dbj|BAK18999.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580] Length = 215 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L + L +R G +K RSEV G K + QKGTGRAR S ++GGG FG Sbjct: 37 LLHKDLLRHLNSQRQGTVSTKTRSEVRGGGRKPWRQKGTGRARAGSNRSPLWKGGGVTFG 96 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFRALDLS 149 P P + KK R LAL+ + +K N +++I+NL S E KTK + + ++S Sbjct: 97 PKPRQFELKVNKKERRLALQTLIYNK--RNKLVIINNLESDLTEPKTKAFLKICKDCEIS 154 Query: 150 --NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +++ + +LA +N+ N+ L+ +N +LR +++L+ AI +++ + Sbjct: 155 MDQKILVVTSKKTPTLKLATQNLKNVELISAGHLNTLSLLRAQQIILTPLAINDIKEIY 213 >gi|58427799|gb|AAW76836.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 184 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 1/183 (0%) Query: 24 FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQF 83 F + + ++ +V+ R G K RSEVA T K QKG ARH + + F Sbjct: 2 FGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVAGTTKKSKKQKGG-GARHGALTAPIF 60 Query: 84 RGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF 143 GGG F P + +K+ A+ S+ +M++D + KTK L+ + Sbjct: 61 VGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLEATKTKDLIEKL 120 Query: 144 RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 + LD+ +I + + L+ARN+P + + VQG++ ++ +V++ A++ +E Sbjct: 121 KGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTVVITADAVKKVE 180 Query: 204 DRF 206 + Sbjct: 181 EWL 183 >gi|238810296|dbj|BAH70086.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 378 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 8/207 (3%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + + D + + +++FA + + + +R G K RSEV+ G Sbjct: 178 KVILLHFDNKA-----LPKELFASPKIYEQAIFDTIMADRASRRQGTHDVKNRSEVSGGG 232 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S + GGG+AFGP P + KKVR A AL+ + Sbjct: 233 KKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPERNYSLKVNKKVRRAAFLSALT-LLSN 291 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +VID+ + TK V + ++L + N I D + N+ N+ + Sbjct: 292 KKSVVIDDFKMSKISTKDAVNKLKSLKIENLKHILVVTTDETVYKSTANLQNVLCVKPNS 351 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +++ LVLS ++ E R K Sbjct: 352 VSVENLVWADVLVLSNEGLKNFEGRIK 378 >gi|216408826|gb|ACJ73096.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408828|gb|ACJ73097.1| ribosomal protein L4 [Campylobacter coli] gi|216408894|gb|ACJ73130.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ + Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDIS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|308190094|ref|YP_003923025.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER] gi|319777390|ref|YP_004137041.1| putative 50S ribosomal protein l4 [Mycoplasma fermentans M64] gi|307624836|gb|ADN69141.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER] gi|318038465|gb|ADV34664.1| Putative 50S ribosomal protein L4 [Mycoplasma fermentans M64] Length = 377 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 8/207 (3%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + + D + + +++FA + + + +R G K RSEV+ G Sbjct: 177 KVILLHFDNKA-----LPKELFASPKIYEQAIFDTIMADRASRRQGTHDVKNRSEVSGGG 231 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120 K + QKGTGRAR S + GGG+AFGP P + KKVR A AL+ + Sbjct: 232 KKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPERNYSLKVNKKVRRAAFLSALT-LLSN 290 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 +VID+ + TK V + ++L + N I D + N+ N+ + Sbjct: 291 KKSVVIDDFKMSKISTKDAVNKLKSLKIENLKHILVVTTDETVYKSTANLQNVLCVKPNS 350 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V +++ LVLS ++ E R K Sbjct: 351 VSVENLVWADVLVLSNEGLKNFEGRIK 377 >gi|269991356|emb|CAX12540.1| 50S ribosomal protein L4 [Fucus vesiculosus] Length = 215 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 5/199 (2%) Query: 11 GEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E K I+++ + + ++ R Q +R G + + R+EV G K QKG Sbjct: 17 NESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKG 76 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 GRAR S ++GGG +FGP P + + + +K L LR L K N+I+++DNL Sbjct: 77 MGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISK--QNNIIIVDNL 134 Query: 130 VSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 E KTK ++ + ++LS + ++++N + NI I L +N+ IL Sbjct: 135 NITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQIL 194 Query: 188 RCSKLVLSKSAIEALEDRF 206 L+++K +++ +ED + Sbjct: 195 LAKNLLVTKDSLKIIEDTY 213 >gi|297581435|ref|ZP_06943358.1| ribosomal protein L4 [Vibrio cholerae RC385] gi|297534273|gb|EFH73111.1| ribosomal protein L4 [Vibrio cholerae RC385] Length = 140 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL V+ + ++VSE F + + ++ +V+ + R G K RSEV+ G Sbjct: 1 MELMVKGANA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR + +R GG F P + KK+ A++ LS+ Sbjct: 56 AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL 146 ++V++N + KTK LV + + L Sbjct: 116 RLIVVENFSVEAPKTKALVAKLKEL 140 >gi|296809728|ref|XP_002845202.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480] gi|238842590|gb|EEQ32252.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480] Length = 291 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ IL R + ++ + R G + +K R +V +G Sbjct: 71 VTLYDFPSMEPIKHLEYKPEHLLLPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGR 130 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K+ QKG+GRAR K RGGG A GP P LP+K+ A R ALS ++ Sbjct: 131 KIRPQKGSGRARLGDKKSPMLRGGGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQ 190 Query: 123 IMVI-DNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 ++VI DN+ + T +L+ + + +I + +R F+ A + L Sbjct: 191 LIVINDNISLERGSTVHLLHDIIQTHGWGREFGRSSLITEVKKERLFRAVAELGRDARAL 250 Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202 ++V D+L +L++ K A++ + Sbjct: 251 DRADVDVKDLLETGRLIIEKQALDKM 276 >gi|152989973|ref|YP_001355695.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2] gi|166234694|sp|A6Q1H9|RL4_NITSB RecName: Full=50S ribosomal protein L4 gi|151421834|dbj|BAF69338.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2] Length = 204 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N + E +++ E + P L + + R + +K R EV+ Sbjct: 1 MSKAVVLNENFEKASEVALPEHFQGINPHN--LYLYAKAYAANLRANNAHTKSRGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S F GGG AFGP + KK + AL AL++K Sbjct: 59 GRKPWQQKGRGGARAGSIRSPLFVGGGVAFGPKNTKNYTQKVNKKQKRKALEFALNEKGE 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++D++ + KTK + + L++ +D LA RN+PN L+ Sbjct: 119 QGALFIVDSIAVESGKTKDAAAIVNKIGARDVLVV-KENIDEKTFLAFRNLPNAYLIEPN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +V+ + E + Sbjct: 178 ELNAYLAAAFRAVVIERPVWEKI 200 >gi|315283851|ref|ZP_07871907.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120] gi|313612505|gb|EFR86591.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120] Length = 126 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 69/121 (57%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K + QKGTGRAR S Q+RGGG FGP P + LPKKVR LA++ LS K Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120 Query: 121 N 121 Sbjct: 121 E 121 >gi|11467470|ref|NP_043616.1| ribosomal protein L4 [Odontella sinensis] gi|1350651|sp|P49546|RK4_ODOSI RecName: Full=50S ribosomal protein L4, chloroplastic gi|1185165|emb|CAA91648.1| 50S ribosomal protein L4 [Odontella sinensis] Length = 215 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ + + +R G +K RSEV G K + QKGTGRAR S ++GGG FG Sbjct: 37 LIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFG 96 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKECKTKYLVTRFRA--LD 147 P P + L KK R LAL+ L +K N+I +IDNL KTK + + ++ Sbjct: 97 PKPRKIILKLNKKERKLALQTLLYNK--RNNISIIDNLETNLDLPKTKTFYSLCKNCEIN 154 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L ++I + +LA RNI N+ L+ +N + +L+ +++++ A++ +++ + Sbjct: 155 LDQKILIIVGEKTIPLKLATRNIKNVELILASNLNTFSLLKAKQILMTPLAVKDIKEIY 213 >gi|216408832|gb|ACJ73099.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408868|gb|ACJ73117.1| ribosomal protein L4 [Campylobacter coli] gi|216408870|gb|ACJ73118.1| ribosomal protein L4 [Campylobacter coli] gi|216408872|gb|ACJ73119.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408874|gb|ACJ73120.1| ribosomal protein L4 [Campylobacter coli] gi|216408876|gb|ACJ73121.1| ribosomal protein L4 [Campylobacter coli] gi|216408878|gb|ACJ73122.1| ribosomal protein L4 [Campylobacter coli] gi|216408880|gb|ACJ73123.1| ribosomal protein L4 [Campylobacter coli] gi|216408882|gb|ACJ73124.1| ribosomal protein L4 [Campylobacter coli] gi|216408884|gb|ACJ73125.1| ribosomal protein L4 [Campylobacter coli] gi|216408886|gb|ACJ73126.1| ribosomal protein L4 [Campylobacter coli] gi|283558013|gb|ADB27038.1| L4 ribosomal protein [Campylobacter coli] Length = 204 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|159478579|ref|XP_001697380.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii] gi|28911891|gb|AAO53242.1| ribosomal protein L4 [Chlamydomonas reinhardtii] gi|158274538|gb|EDP00320.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii] Length = 243 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 10/211 (4%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + DG KG ++ + A +G++ R L R G + + RSEV G Sbjct: 29 ASIPYKAADGSSKGTQQLALKV-AEDSAKGLVHRYLVMVQQNARQGTASTLTRSEVRGGG 87 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K Y QKGTG AR S F GGG FGP P ++ KK R LAL AL Sbjct: 88 KKPYAQKGTGNARRGSSVSPLFPGGGVTFGPKPKDWSISMNKKERRLALATALQSATA-- 145 Query: 122 DIMVIDNL--VSKECKTKYLVTRFRALDL----SNALIIDGCQLDRNFQLAARNIPNINL 175 D++V+++L ++ KTK +V L L+I + LA RNI + + Sbjct: 146 DMIVVESLAGKLQDTKTKSMVALLEKLGANAMERKVLLITKEERPD-VTLAGRNIAKLTM 204 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I+V+D+L +++ A+ ++ + Sbjct: 205 NTASAISVFDVLNADHIIIEDEALAHVQSFY 235 >gi|216408588|gb|ACJ72977.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408590|gb|ACJ72978.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408592|gb|ACJ72979.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|157737004|ref|YP_001489687.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018] gi|315636196|ref|ZP_07891450.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22] gi|226730613|sp|A8ESU4|RL4_ARCB4 RecName: Full=50S ribosomal protein L4 gi|157698858|gb|ABV67018.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018] gi|315479557|gb|EFU70236.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22] Length = 203 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V N E+ G + + + L ++ R +++K R+EV+ Sbjct: 1 MSKAIVLNEKFENNGEVVLPASY--EEINSHNLYLYVKSYLASLRANTARAKTRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 G K QKG+G AR SK F GGG+AFGP + KK ++LAL++AL+ + + Sbjct: 59 GKKPKAQKGSGAARWGSKRSPLFVGGGQAFGPTKRNYNQKVNKKQKALALKYALNAQANN 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D+L + KTK V ++ + LI+ +D LA RNI N ++ Q Sbjct: 119 GSLFVVDSLKIESGKTKEAVAVLSKINKRDTLIVCDV-IDEKTYLAFRNIKNCYMVEKQE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y I +++ KS ++AL Sbjct: 178 VNAYLIAVYHSVLIEKSVLDAL 199 >gi|216408932|gb|ACJ73149.1| ribosomal protein L4 [Campylobacter coli] gi|283558007|gb|ADB27035.1| L4 ribosomal protein [Campylobacter coli] Length = 204 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--TEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|157164387|ref|YP_001467719.1| 50S ribosomal protein L4 [Campylobacter concisus 13826] gi|166234649|sp|A7ZG11|RL4_CAMC1 RecName: Full=50S ribosomal protein L4 gi|157101429|gb|EAT97240.2| ribosomal protein L4/L1 family [Campylobacter concisus 13826] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E+ G + + + L ++ R + +K R+ V+ Sbjct: 1 MSKIHVLNDKFENSGELELPASY--AEVNPHNLYLYVKSYLAGIRANSAHTKSRAFVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL +AL+ K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNKKQKRLALEYALAVKAQ 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 I +D++ + KTK + L + +ALI+ LD LA RN+ N ++ Sbjct: 119 DGKIFAVDSISIESGKTKDAANIIKNLKVKDALIVKDL-LDDKTLLAFRNLANCYVVDAN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + S +++ K+A++ + Sbjct: 178 EVNAYLVSTFSSVIIEKAALKTI 200 >gi|57238713|ref|YP_179844.1| 50S ribosomal protein L4 [Campylobacter jejuni RM1221] gi|205355720|ref|ZP_03222490.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8421] gi|305432599|ref|ZP_07401760.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20] gi|81557380|sp|Q5HS91|RL4_CAMJR RecName: Full=50S ribosomal protein L4 gi|57167517|gb|AAW36296.1| ribosomal protein L4 [Campylobacter jejuni RM1221] gi|108863172|gb|ABG22151.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863174|gb|ABG22152.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863176|gb|ABG22153.1| 50S ribosomal protein L4 [Campylobacter coli] gi|205346497|gb|EDZ33130.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CG8421] gi|216408546|gb|ACJ72956.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408548|gb|ACJ72957.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408550|gb|ACJ72958.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408552|gb|ACJ72959.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408554|gb|ACJ72960.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408556|gb|ACJ72961.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408558|gb|ACJ72962.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408560|gb|ACJ72963.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408562|gb|ACJ72964.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408564|gb|ACJ72965.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408566|gb|ACJ72966.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408568|gb|ACJ72967.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408570|gb|ACJ72968.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408572|gb|ACJ72969.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408574|gb|ACJ72970.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408576|gb|ACJ72971.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408578|gb|ACJ72972.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408580|gb|ACJ72973.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408582|gb|ACJ72974.1| ribosomal protein L4 [Campylobacter coli] gi|216408584|gb|ACJ72975.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408586|gb|ACJ72976.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408656|gb|ACJ73011.1| ribosomal protein L4 [Campylobacter coli] gi|216408658|gb|ACJ73012.1| ribosomal protein L4 [Campylobacter coli] gi|216408660|gb|ACJ73013.1| ribosomal protein L4 [Campylobacter coli] gi|216408662|gb|ACJ73014.1| ribosomal protein L4 [Campylobacter coli] gi|216408690|gb|ACJ73028.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408692|gb|ACJ73029.1| ribosomal protein L4 [Campylobacter coli] gi|216408694|gb|ACJ73030.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408696|gb|ACJ73031.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408698|gb|ACJ73032.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408700|gb|ACJ73033.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408702|gb|ACJ73034.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408704|gb|ACJ73035.1| ribosomal protein L4 [Campylobacter coli] gi|216408706|gb|ACJ73036.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408708|gb|ACJ73037.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408710|gb|ACJ73038.1| ribosomal protein L4 [Campylobacter coli] gi|216408712|gb|ACJ73039.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408714|gb|ACJ73040.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408716|gb|ACJ73041.1| ribosomal protein L4 [Campylobacter coli] gi|216408718|gb|ACJ73042.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408720|gb|ACJ73043.1| ribosomal protein L4 [Campylobacter coli] gi|216408722|gb|ACJ73044.1| ribosomal protein L4 [Campylobacter coli] gi|216408724|gb|ACJ73045.1| ribosomal protein L4 [Campylobacter coli] gi|216408726|gb|ACJ73046.1| ribosomal protein L4 [Campylobacter coli] gi|216408728|gb|ACJ73047.1| ribosomal protein L4 [Campylobacter coli] gi|216408730|gb|ACJ73048.1| ribosomal protein L4 [Campylobacter coli] gi|216408732|gb|ACJ73049.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408734|gb|ACJ73050.1| ribosomal protein L4 [Campylobacter coli] gi|216408736|gb|ACJ73051.1| ribosomal protein L4 [Campylobacter coli] gi|216408738|gb|ACJ73052.1| ribosomal protein L4 [Campylobacter coli] gi|216408740|gb|ACJ73053.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408742|gb|ACJ73054.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408744|gb|ACJ73055.1| ribosomal protein L4 [Campylobacter coli] gi|216408746|gb|ACJ73056.1| ribosomal protein L4 [Campylobacter coli] gi|216408748|gb|ACJ73057.1| ribosomal protein L4 [Campylobacter coli] gi|216408750|gb|ACJ73058.1| ribosomal protein L4 [Campylobacter coli] gi|216408752|gb|ACJ73059.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408754|gb|ACJ73060.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408756|gb|ACJ73061.1| ribosomal protein L4 [Campylobacter coli] gi|216408758|gb|ACJ73062.1| ribosomal protein L4 [Campylobacter coli] gi|216408760|gb|ACJ73063.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408762|gb|ACJ73064.1| ribosomal protein L4 [Campylobacter coli] gi|216408764|gb|ACJ73065.1| ribosomal protein L4 [Campylobacter coli] gi|216408766|gb|ACJ73066.1| ribosomal protein L4 [Campylobacter coli] gi|216408768|gb|ACJ73067.1| ribosomal protein L4 [Campylobacter coli] gi|216408770|gb|ACJ73068.1| ribosomal protein L4 [Campylobacter coli] gi|216408772|gb|ACJ73069.1| ribosomal protein L4 [Campylobacter coli] gi|216408774|gb|ACJ73070.1| ribosomal protein L4 [Campylobacter coli] gi|216408776|gb|ACJ73071.1| ribosomal protein L4 [Campylobacter coli] gi|216408778|gb|ACJ73072.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408780|gb|ACJ73073.1| ribosomal protein L4 [Campylobacter coli] gi|216408782|gb|ACJ73074.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408784|gb|ACJ73075.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408786|gb|ACJ73076.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408788|gb|ACJ73077.1| ribosomal protein L4 [Campylobacter coli] gi|216408790|gb|ACJ73078.1| ribosomal protein L4 [Campylobacter coli] gi|216408792|gb|ACJ73079.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408794|gb|ACJ73080.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408796|gb|ACJ73081.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408798|gb|ACJ73082.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408800|gb|ACJ73083.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408802|gb|ACJ73084.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408804|gb|ACJ73085.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408806|gb|ACJ73086.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408808|gb|ACJ73087.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408810|gb|ACJ73088.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408812|gb|ACJ73089.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408814|gb|ACJ73090.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408816|gb|ACJ73091.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408902|gb|ACJ73134.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408916|gb|ACJ73141.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408934|gb|ACJ73150.1| ribosomal protein L4 [Campylobacter coli] gi|283558005|gb|ADB27034.1| L4 ribosomal protein [Campylobacter coli] gi|283558009|gb|ADB27036.1| L4 ribosomal protein [Campylobacter coli] gi|283558011|gb|ADB27037.1| L4 ribosomal protein [Campylobacter coli] gi|304444310|gb|EFM36962.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20] gi|315059152|gb|ADT73481.1| LSU ribosomal protein L4p [Campylobacter jejuni subsp. jejuni S3] Length = 204 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|283956162|ref|ZP_06373647.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336] gi|283792316|gb|EFC31100.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336] Length = 204 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHAKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+LV + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLVIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|118474924|ref|YP_891245.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. fetus 82-40] gi|226730634|sp|A0RM12|RL4_CAMFF RecName: Full=50S ribosomal protein L4 gi|118414150|gb|ABK82570.1| ribosomal protein L4/L1 family [Campylobacter fetus subsp. fetus 82-40] Length = 204 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +++V N E I + + L ++ R + +KGRS+V+ Sbjct: 1 MSKIAVLNEKFEKTSEIELPASY--AEVNSHNLYLYVKSYLAGIRANSAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYDQKVNKKQKRLALEFALNDKVA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +D++ KTK + L + +ALII +LD LA RN+ N ++ Sbjct: 119 NGKFFAVDSIEISSGKTKDAASIINKLGVRDALII-KNELDAKTLLAFRNLANCYVIDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + S ++ K+A++++ Sbjct: 178 EVNAYLVSVYSAVIAEKAALQSI 200 >gi|216408864|gb|ACJ73115.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAYTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica Group] Length = 288 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 1/144 (0%) Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + Sbjct: 138 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 197 Query: 123 IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+ Sbjct: 198 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 257 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 NVY IL+ LV+++ A+ + +R Sbjct: 258 NVYSILQHDTLVMTRDAVNRIVER 281 >gi|315639320|ref|ZP_07894482.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21] gi|315480646|gb|EFU71288.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21] Length = 204 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNEKFEKSGELELPAKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNKKQKRLALERALADKAI 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|216408684|gb|ACJ73025.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + ++L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTANSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|216408664|gb|ACJ73015.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVPVFNAVIMEKSALESI 200 >gi|108863168|gb|ABG22149.1| 50S ribosomal protein L4 [Campylobacter coli] gi|108863170|gb|ABG22150.1| 50S ribosomal protein L4 [Campylobacter coli] Length = 204 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNSHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|216408904|gb|ACJ73135.1| ribosomal protein L4 [Campylobacter coli] gi|216408906|gb|ACJ73136.1| ribosomal protein L4 [Campylobacter coli] gi|216408908|gb|ACJ73137.1| ribosomal protein L4 [Campylobacter coli] gi|216408910|gb|ACJ73138.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVVKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|269101056|ref|YP_003289204.1| 50S ribosomal protein L4 [Ectocarpus siliculosus] gi|266631564|emb|CAV31235.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus] gi|270118694|emb|CAT18764.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus] Length = 232 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MIELSVRNLDGEDKGV-ISVSEDIF-ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 ++ ++ L GE+K +S++ I + IL R Q +R G + R+EV Sbjct: 22 ILTFPLKLLTGEEKNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVK 81 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118 G K + QKGTGRAR S ++GGG +FGP P ++ L +K LA+R + Sbjct: 82 GGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLI--IL 139 Query: 119 CSNDIMVID-NLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINL 175 I +ID N S + KT + F+ D S + ++ N RNI + + Sbjct: 140 KEPSITIIDHNFSSIDNKTNIFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTI 199 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + +N+ +L L +SK +++ +E+ + Sbjct: 200 MRADTLNLITLLESDHLFISKDSLKIIEEIY 230 >gi|299830599|ref|YP_003735047.1| 50S ribosomal protein L4 [Durinskia baltica] gi|297384963|gb|ADI40262.1| 50S ribosomal protein L4 [Durinskia baltica] Length = 215 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 7 RNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 + G+ + + +L + L +R G +K RSEV G K + Sbjct: 12 LDFTGKALDSTAELQLSVLEKSGN-YLLHKDLLRHYNSQRQGTVSTKTRSEVRGGGRKPW 70 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S ++GGG FGP P + KK R LAL+ L +K N+I+V Sbjct: 71 RQKGTGRARAGSNRSPLWKGGGVIFGPKPKTVSIKVNKKERRLALQTLLYNK--KNNILV 128 Query: 126 IDNLV--SKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 I+NL + KTK + + ++L ++I + +LA +N+ + L+ + Sbjct: 129 IENLENGLTDSKTKSFLDICKNCSVNLDQKVLIVVAEKTVPLKLATQNLKTVELILASNL 188 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N + +L +++L+ A+ +++ + Sbjct: 189 NTFSLLNAKQILLTPLALTTIKEIY 213 >gi|329942412|ref|ZP_08291222.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10] gi|154795763|gb|ABS86878.1| ribosomal protein L4 [Chlamydophila psittaci 6BC] gi|313847649|emb|CBY16637.1| putative 50S ribosomal protein l4 [Chlamydophila psittaci RD1] gi|325507320|gb|ADZ18958.1| 50S ribosomal protein L4 [Chlamydophila psittaci 6BC] gi|328815322|gb|EGF85310.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10] gi|328914286|gb|AEB55119.1| ribosomal protein L4/L1 family [Chlamydophila psittaci 6BC] Length = 224 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 12/214 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + + + FA + ++ L KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFFGNKAGEVELPDSFFAQEGSGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + +K + A+R LS K Sbjct: 61 STKKPFRQKGTGNARQGCLASPQFRGGGIVFGPKPKFDQHVRINRKEKRAAIRLLLSQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDGCQ---LDRNFQLAARN 169 +N ++V D+ V KTK + + ++ L ID + + + +L+ RN Sbjct: 121 QTNRLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLSLRN 180 Query: 170 IPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 +P + IN YD++ +V+S+ A+ L Sbjct: 181 LPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214 >gi|15835428|ref|NP_297187.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg] gi|270285608|ref|ZP_06195002.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg] gi|270289618|ref|ZP_06195920.1| 50S ribosomal protein L4 [Chlamydia muridarum Weiss] gi|301337004|ref|ZP_07225206.1| 50S ribosomal protein L4 [Chlamydia muridarum MopnTet14] gi|13878710|sp|Q9PJL5|RL4_CHLMU RecName: Full=50S ribosomal protein L4 gi|7190842|gb|AAF39616.1| ribosomal protein L4 [Chlamydia muridarum Nigg] Length = 222 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + + FA + ++ + L KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKVELPDAFFA-EGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P H + KK R A+R L+ K Sbjct: 60 TRKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDGCQ---LDRNFQLAARNI 170 + ++V DN V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVADNSVFISSLNAPKTKEALRFLKECNVECRGVLFVDGLDHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + IN YDI +V+S+ A+E L + Sbjct: 180 AAVRGFTYGENINGYDIAAARNIVVSEKALELLVENL 216 >gi|118411191|ref|YP_874585.1| 50S ribosomal protein L4 [Thalassiosira pseudonana] gi|125987630|sp|A0T0X3|RK4_THAPS RecName: Full=50S ribosomal protein L4, chloroplastic gi|116739938|gb|ABK20808.1| 50S ribosomal protein L4 [Thalassiosira pseudonana] Length = 215 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 4/177 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ R + ++ G +K RSEV G K + QKGTGRAR S ++GGG FG Sbjct: 39 LIHRDILRHQLSQKQGTVSTKTRSEVRGGGKKPWRQKGTGRARAGSSRSPLWKGGGVIFG 98 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT--RFRALDLS 149 P P L KK R+LAL+ L +K + I + L K KTK + + +L+ Sbjct: 99 PKPKTANLKLNKKERNLALQTLLYNK--RDIITQVSTLDIKNVKTKEFYNFCKEKGFNLN 156 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L++ + +L+ RN+ N+ L+ +N +L+ K++++ SA+ +++ + Sbjct: 157 EKLLVIDSEKTTPLKLSTRNLKNVELISASNLNTLSLLKAKKILVTTSALNDIKEIY 213 >gi|269302430|gb|ACZ32530.1| ribosomal protein L4 [Chlamydophila pneumoniae LPCoLN] Length = 224 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 12/218 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + V++ +FA + ++ + KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + +K R A+R L+ K Sbjct: 61 STKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALII---DGCQLDRNFQLAARN 169 +N + V+D+ V KT+ + + ++ + L I D + + N +L+ RN Sbjct: 121 QTNKLTVVDDTVFVDALTAPKTQSALKFLKDCNVECRSILFIDHLDHVEKNENLRLSLRN 180 Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + + IN YD+ +V+SK A++ L +R Sbjct: 181 LTAVKGFVYGININGYDLASAHNIVISKKALQELVERL 218 >gi|89898719|ref|YP_515829.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56] gi|109893585|sp|Q252V4|RL4_CHLFF RecName: Full=50S ribosomal protein L4 gi|89332091|dbj|BAE81684.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56] Length = 224 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 14/215 (6%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + + + FA + ++ + KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFFGNKAGEVELPDAFFAQEGNGLQLVKDYIVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + KK + A+R LS K Sbjct: 61 STKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLSQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARN 169 +N ++V D+ V KTK + + ++ L ID Q + +L+ RN Sbjct: 121 QTNRLIVADDSVFTKSLTAPKTKEALRFLKSCNVECRGVLFIDDLNHAQNNEGLRLSLRN 180 Query: 170 IPNINLLPVQGINV--YDILRCSKLVLSKSAIEAL 202 +P + G+NV YD++ +V+S+ A+ L Sbjct: 181 LPAVRGF-AYGMNVNGYDLVSARNIVISEKALTGL 214 >gi|37912990|gb|AAR05319.1| ribosomal protein L4 [uncultured marine alpha proteobacterium HOT2C01] Length = 229 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 119/204 (58%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ + +DG+ G +++ + +F K ++ ++RW ++ +++K RSEV T Sbjct: 24 MQIDMHKIDGKKSGSVNLKDQLFNSKSGLSVVGSLVRWSESNQKPLRARTKNRSEVKGTT 83 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G ARH SK + FR GG A + + +PK+ R AL+H +DK +N Sbjct: 84 QKLGRQKGSGGARHGSKKANIFRSGGMAHNLRGVRSLKKMPKRTRQEALKHIFADKLKNN 143 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++++++ L +E KTK L L+ +ALI++G + D NF LA+RN+ NI + Sbjct: 144 NLIIVEELKIEEPKTKILAKSLSDLNAHSALILEGDKPDNNFVLASRNLKNIKYSSINNF 203 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N D+L KL++SK+A+E LE R Sbjct: 204 NALDLLGFEKLIMSKNALEILESR 227 >gi|283953683|ref|ZP_06371214.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414] gi|283794724|gb|EFC33462.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414] Length = 204 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKGV 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGIKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSALESI 200 >gi|123959698|gb|AAI28968.1| LOC100037111 protein [Xenopus laevis] Length = 169 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%) Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCS 120 K QKG+GR+R S +RGGG A GP P + +P K+R L L+ AL+ K Sbjct: 1 KKPRQQKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQ 60 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPV 178 +D+ +ID+L +YL+ ++++I L N A N+ IN++P Sbjct: 61 DDLHIIDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPA 120 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 G+NV+ +L+ +VL+ +A++ LE++ Sbjct: 121 TGLNVFSMLKHDTVVLTVAAVDFLEEKL 148 >gi|238499961|ref|XP_002381215.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357] gi|317150572|ref|XP_001824126.2| 50S ribosomal protein L4 [Aspergillus oryzae RIB40] gi|220692968|gb|EED49314.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357] Length = 289 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + + ++ IL R + ++ R G + +K R +V +G K++ QKGTG Sbjct: 76 EPLRFVEYPRNHLLMPLRKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTG 135 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-NLV 130 +AR K +GGG A GP P +LP+K+ A R ALS ++ +++ID ++ Sbjct: 136 KARVGDKKSPIRKGGGVAHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDIS 195 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T YL+ ++ + +I Q + R + + +L + ++V Sbjct: 196 IPEDATPYLIKEIFKVNNWGREFGRSTLITD-QPNEGLFATVREVGEHAKILDRKDVDVK 254 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +L++ K A++ + Sbjct: 255 DLLETGRLIIEKQALDRI 272 >gi|57505355|ref|ZP_00371284.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195] gi|57016491|gb|EAL53276.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195] Length = 204 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + + L ++ R + +K RS+V+ Sbjct: 1 MSKIVVLNEKFEKSGELELP--VKYAEVNPHNLYLYVKSYLASLRANTAHTKDRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNKKQKRLALERALADKAI 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KSA+E++ Sbjct: 178 EVNAYLVSVFNAVIIEKSALESI 200 >gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123 Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + + Sbjct: 78 PYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKL 137 Query: 124 MVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 +V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+N Sbjct: 138 LVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLN 197 Query: 183 VYDILRCSKLVLSKSAIEALEDR 205 VY IL+ LV+++ A+ + +R Sbjct: 198 VYSILQHDTLVMTRDAVNRIVER 220 >gi|15618556|ref|NP_224842.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae CWL029] gi|15836178|ref|NP_300702.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae J138] gi|16752394|ref|NP_444653.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae AR39] gi|33242003|ref|NP_876944.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae TW-183] gi|7674302|sp|Q9Z7Q8|RL4_CHLPN RecName: Full=50S ribosomal protein L4 gi|4376944|gb|AAD18785.1| L4 Ribosomal Protein [Chlamydophila pneumoniae CWL029] gi|7189036|gb|AAF37985.1| ribosomal protein L4 [Chlamydophila pneumoniae AR39] gi|8979018|dbj|BAA98853.1| L4 ribosomal protein [Chlamydophila pneumoniae J138] gi|33236513|gb|AAP98601.1| ribosomal protein L4 [Chlamydophila pneumoniae TW-183] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 12/218 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + V++ +FA + ++ + KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + +K R A+R L+ K Sbjct: 61 STKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALII---DGCQLDRNFQLAARN 169 +N + V+D+ V KT+ + + ++ + L I D + + N +L+ RN Sbjct: 121 QTNKLTVVDDTVFVDALTAPKTQSALRFLKDCNVECRSILFIDHLDHVEKNENLRLSLRN 180 Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + + IN YD+ +V+SK A++ L +R Sbjct: 181 LTAVKGFVYGININGYDLASAHNIVISKKALQELVERL 218 >gi|154310648|ref|XP_001554655.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10] gi|150851338|gb|EDN26531.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10] Length = 211 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 8/185 (4%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ +L R + ++ R G + SK R +V + K+ QKGTG AR + G Sbjct: 16 LPLRRDLLHRAVVFEGDNTRQGTASSKTRFDVHGSHRKIRPQKGTGGARLGWRQSPLIVG 75 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GGK+FGP P LP+K+ +A R ALS ++ ++V ++ + + KT+Y F Sbjct: 76 GGKSFGPHPRDFGTDLPRKMYDIAWRTALSWRYRKGQLIVCEDGMEFEHPKTRYAKRVFE 135 Query: 145 ALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 L LI+ G + ++N + +L V ++V D+L S++V+ KSA++ Sbjct: 136 HLGWGKNNGRTLIVTGGFRKNLSSVVSKN--DATVLDVNEVDVKDLLELSRVVIEKSALD 193 Query: 201 A-LED 204 LE+ Sbjct: 194 QMLEE 198 >gi|121713920|ref|XP_001274571.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1] gi|119402724|gb|EAW13145.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1] Length = 292 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E VI + + ++ IL R + ++ R G + +K R++V + K+Y QKGTG Sbjct: 79 EPLRVIEYPRNHLLMPLRKDILHRAVVYEGDMTRQGTASTKWRADVHGSNKKLYAQKGTG 138 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR K RGGG AFGP P +LP+K+ A R ALS ++ +++IDN + Sbjct: 139 RARAGDKKSPIRRGGGVAFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEIS 198 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T +L+ ++ + +I QL R + + +L Q ++V Sbjct: 199 IPEDATPHLIQEIFKVNGWGREFGRSTLITD-QLKEGLFDTVRGVGEHAKILNRQDVDVK 257 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +LV+ K A++ + Sbjct: 258 DLLETGRLVIEKQALDRI 275 >gi|34558026|ref|NP_907841.1| 50S ribosomal protein L4 [Wolinella succinogenes DSM 1740] gi|46577164|sp|Q7M8D5|RL4_WOLSU RecName: Full=50S ribosomal protein L4 gi|34483744|emb|CAE10741.1| 50S RIBOSOMAL PROTEIN L4 [Wolinella succinogenes] Length = 204 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + N + + G +++ E + L ++ R +K+K R EV+ Sbjct: 1 MSKAIILNNELQKNGEVALPERF--KEIHSHNLYLYVKSYLASLRANSAKAKKRGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL++AL +K Sbjct: 59 GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKVNKKQKKLALQYALMEKAE 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+D+L KTK F+ L+ + L + D LA RN+ L Sbjct: 119 QGKLYVVDSLQVDSGKTKDAYAMFKTLNERSTLFV-SQISDEKTFLAFRNLKECYLADAN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + +V+ KS E + Sbjct: 178 ELNAYLVAAFRSVVIEKSLFENI 200 >gi|183508831|ref|ZP_02958283.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675798|gb|EDT87703.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 211 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLP 177 ++ ++ N + TK +V +L N +++ N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADNFSNIKKSTNNLQKVTTKL 180 Query: 178 VQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202 >gi|62184738|ref|YP_219523.1| 50S ribosomal protein L4 [Chlamydophila abortus S26/3] gi|81313079|sp|Q5L719|RL4_CHLAB RecName: Full=50S ribosomal protein L4 gi|62147805|emb|CAH63551.1| putative 50S ribosomal protein l4 [Chlamydophila abortus S26/3] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 12/214 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + + + FA + ++ L KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFFGNKAGEVELPDAFFAQEGSGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + KK + A+R LS K Sbjct: 61 STKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLSQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDGCQ---LDRNFQLAARN 169 +N ++V D+ V KTK + + ++ L ID + + + +L+ RN Sbjct: 121 QTNHLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLSLRN 180 Query: 170 IPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 +P + IN YD++ +V+S+ A+ L Sbjct: 181 LPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214 >gi|164656120|ref|XP_001729188.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966] gi|159103078|gb|EDP41974.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966] Length = 395 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 51/241 (21%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + +S +F P Q + + + R G + +K RS+VAY+G K+ QKGTGRAR S Sbjct: 91 VPMSSHVFNTAPHQHAMHMAVVYYLDALRSGTASTKSRSDVAYSGKKLRPQKGTGRARLS 150 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK- 135 RGGG A GP P LP+KVR LALR ALS +F + V+ +L Sbjct: 151 DAGNPMLRGGGVAHGPKPRDFKTDLPRKVRELALRSALSARFREGRLHVVPSLDWYAPPM 210 Query: 136 -TKYLVTRFRALDLSNALIIDGCQLD--------------------------------RN 162 T L A +N L + + R+ Sbjct: 211 STNKLARLLSAKQWTNTLFLTAPRDPVSPVANERGSMRPSSVNLMYTDQQLTRHAQYIRH 270 Query: 163 FQLAARNIPNINLLP-----------------VQGINVYDILRCSKLVLSKSAIEALEDR 205 F LA RN+P+++L+ ++ Y +L ++VL A+E LE++ Sbjct: 271 FALAQRNLPDVDLVRLHELPPHPRPRLEHAKQPGELHAYQVLEFQRIVLDMGALEWLEEK 330 Query: 206 F 206 Sbjct: 331 L 331 >gi|154174036|ref|YP_001409152.1| 50S ribosomal protein L4 [Campylobacter curvus 525.92] gi|226730633|sp|A7H110|RL4_CAMC5 RecName: Full=50S ribosomal protein L4 gi|112802266|gb|EAT99610.1| ribosomal protein L4/L1 family [Campylobacter curvus 525.92] Length = 204 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E+ G + + + L ++ R + +K R+ V+ Sbjct: 1 MSKILVLNDKFENSGELELPASY--AEVNPHNLYLYVKSYLAGMRANTAHTKSRAYVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+ K Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNKKQKRLALECALAQKAE 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + +D+L + KTK AL+L +ALI+ LD LA RN+ N ++ Sbjct: 119 AGKLFAVDSLAVESGKTKDAAKIIEALNLRDALIVKDL-LDDKTLLAFRNMANCYVVDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + S +++ K+ ++ + Sbjct: 178 EVNAYLVSVFSSVIVEKAVLQTI 200 >gi|268680586|ref|YP_003305017.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946] gi|268618617|gb|ACZ12982.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946] Length = 204 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M V N E+ G +++ + L ++ R + SK + EV+ Sbjct: 1 MSSAIVLNEKLENVGALALPASF--EEIHSHNLYLYVKSYQAALRSNTAHSKTKGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S+ + GGG AFGP + KK + LAL AL++K Sbjct: 59 GKKPWAQKGRGGARAGSRRSPVWVGGGAAFGPKANRNYDLKVNKKQKRLALEFALNEKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +N + V+D+L + KTK + + L +ALI+ +D LA RNI N L+ Sbjct: 119 NNALFVVDSLNIESGKTKDAASIIKTLGTRDALIV-KELVDEKTMLAFRNIQNCYLVDAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +++ KS +E + Sbjct: 178 ELNAYLATAFYAVIIEKSVLETI 200 >gi|185178723|ref|ZP_02964539.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024290|ref|ZP_02996980.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518685|ref|ZP_03004113.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524431|ref|ZP_03004451.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867658|ref|ZP_03079660.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209554081|ref|YP_002284631.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550540|ref|ZP_03771489.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551132|ref|ZP_03772078.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226731441|sp|B5ZB41|RL4_UREU1 RecName: Full=50S ribosomal protein L4 gi|184209322|gb|EDU06365.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018963|gb|EDU57003.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997750|gb|EDU66847.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659694|gb|EDX53074.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660715|gb|EDX53970.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209541582|gb|ACI59811.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378947|gb|EEH01312.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379694|gb|EEH02056.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 211 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLP 177 ++ ++ N + TK +V +L N +++ N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADHFSNIKKSTNNLQKVTTKL 180 Query: 178 VQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202 >gi|13357792|ref|NP_078066.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762012|ref|YP_001752315.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920440|ref|ZP_02931752.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701899|ref|ZP_02971552.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|46577295|sp|Q9PQQ9|RL4_UREPA RecName: Full=50S ribosomal protein L4 gi|189042890|sp|B1AIM1|RL4_UREP2 RecName: Full=50S ribosomal protein L4 gi|11276689|pir||A82915 ribosomal protein L4 UU232 [imported] - Ureaplasma urealyticum gi|6899202|gb|AAF30641.1|AE002122_10 ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827589|gb|ACA32851.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902892|gb|EDT49181.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700632|gb|EDU18914.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 211 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 3/202 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ + ++DG + V+ D+F P + + + ++ +R G + + EV Sbjct: 1 MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QK TG+AR S + GGG FGP P + KVR LA + AL+ K Sbjct: 61 GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120 Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLP 177 ++ ++ N + TK +V +L N +++ N + + N+ + Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIVDNFSNIKKSTNNLQKVTTKL 180 Query: 178 VQGINVYDILRCSKLVLSKSAI 199 ++V D++ + +V+++ A Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202 >gi|86149254|ref|ZP_01067485.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|218563292|ref|YP_002345072.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|46577294|sp|Q9PLX2|RL4_CAMJE RecName: Full=50S ribosomal protein L4 gi|85840036|gb|EAQ57294.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360999|emb|CAL35800.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|216408594|gb|ACJ72980.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408596|gb|ACJ72981.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408598|gb|ACJ72982.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408600|gb|ACJ72983.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408602|gb|ACJ72984.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408604|gb|ACJ72985.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408606|gb|ACJ72986.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408608|gb|ACJ72987.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408610|gb|ACJ72988.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408612|gb|ACJ72989.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408614|gb|ACJ72990.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408616|gb|ACJ72991.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408618|gb|ACJ72992.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408620|gb|ACJ72993.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408622|gb|ACJ72994.1| ribosomal protein L4 [Campylobacter coli] gi|216408624|gb|ACJ72995.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408626|gb|ACJ72996.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408628|gb|ACJ72997.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408630|gb|ACJ72998.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408632|gb|ACJ72999.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408634|gb|ACJ73000.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408636|gb|ACJ73001.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408638|gb|ACJ73002.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408640|gb|ACJ73003.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408642|gb|ACJ73004.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408644|gb|ACJ73005.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408646|gb|ACJ73006.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408648|gb|ACJ73007.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408650|gb|ACJ73008.1| ribosomal protein L4 [Campylobacter jejuni] gi|216408652|gb|ACJ73009.1| ribosomal protein L4 [Campylobacter jejuni] gi|284926897|gb|ADC29249.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni IA3902] gi|315926633|gb|EFV06013.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 204 Score = 175 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KS +E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSVLESI 200 >gi|313678366|ref|YP_004056106.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45] gi|312950123|gb|ADR24718.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45] Length = 323 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 3/191 (1%) Query: 19 VSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++ +FA K + + +R G K R+EV G K + QKGTGRAR S Sbjct: 134 LNPKLFASSKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGS 193 Query: 78 KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + GGG+AFGP P + KKVR A AL+ + +VID+ + T Sbjct: 194 TRSPIWVGGGRAFGPTPARNYKLKVNKKVRFNAFISALT-LLAQSKAVVIDDFKLESIST 252 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + + L + N I D + N+ N+ + ++V +++ LVLS Sbjct: 253 KAAINKLNDLGIKNQKHILIATNDEVTYKSVANLQNVICVKPSSVSVENLIWADVLVLST 312 Query: 197 SAIEALEDRFK 207 E E R K Sbjct: 313 EGYENFEGRIK 323 >gi|291277267|ref|YP_003517039.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198] gi|290964461|emb|CBG40311.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198] Length = 205 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + + I + + + ++ L ++ R +K+K R EV+ Sbjct: 1 MSKAIVLDKQLKKNSEIDLPQSY--SEIKEHNLYLYVKSYLASLRNNSAKAKNRGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL AL K Sbjct: 59 GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYHLKINKKQKRLALEFALHQKAE 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+D++ KTK F+ ++ + L + + N LA RN+ N L Sbjct: 119 MGKLYVVDSIEIASGKTKDAYKMFQEINERSTLFVTQLS-NENTFLAFRNLKNCYLADAN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + +V+ K+ E + Sbjct: 178 ELNAYLVAAFRSVVIEKTVFEEI 200 >gi|83772865|dbj|BAE62993.1| unnamed protein product [Aspergillus oryzae] Length = 250 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + + ++ IL R + ++ R G + +K R +V +G K++ QKGTG Sbjct: 37 EPLRFVEYPRNHLLMPLRKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTG 96 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-NLV 130 +AR K +GGG A GP P +LP+K+ A R ALS ++ +++ID ++ Sbjct: 97 KARVGDKKSPIRKGGGVAHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDIS 156 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVY 184 E T YL+ ++ + +I Q + R + + +L + ++V Sbjct: 157 IPEDATPYLIKEIFKVNNWGREFGRSTLITD-QPNEGLFATVREVGEHAKILDRKDVDVK 215 Query: 185 DILRCSKLVLSKSAIEAL 202 D+L +L++ K A++ + Sbjct: 216 DLLETGRLIIEKQALDRI 233 >gi|299830378|ref|YP_003734593.1| ribosomal protein L4 [Kryptoperidinium foliaceum] gi|297385080|gb|ADI40378.1| ribosomal protein L4 [Kryptoperidinium foliaceum] Length = 215 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L + L +R G +K RSEV G K + QKGTGRAR S + ++GGG FG Sbjct: 37 LLHKDLLRHYNSQRQGTLSTKTRSEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVIFG 96 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKECKTKYLVTRFR--ALD 147 P P L KK R LAL+ L +K N I+V++NL + KTK + + +++ Sbjct: 97 PKPKTISIKLNKKERRLALQTLLYNK--KNSILVVENLENAITDSKTKSFLKICQDCSIN 154 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L +++ + +LA NI +I L+ +N + +L +++++ A+ +++ + Sbjct: 155 LDQPVLVVVNEKTLPLKLATNNIKSIELILASQLNTFSLLNAKQILVTPLALNTIQEVY 213 >gi|216408892|gb|ACJ73129.1| ribosomal protein L4 [Campylobacter jejuni] Length = 204 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWEGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + D+L + KTK + L + +ALI+ LD LA RN+ N ++ V Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + + +++ KS +E++ Sbjct: 178 EVNAYLVSVFNAVIMEKSVLESI 200 >gi|295670599|ref|XP_002795847.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01] gi|226284932|gb|EEH40498.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01] Length = 346 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RG Sbjct: 149 LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 208 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSK-ECKTKYLVTRF 143 GG A GP P LPKK+ LA R ALS ++ ++++ DN+ + +L F Sbjct: 209 GGVAHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVF 268 Query: 144 RALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 +L+I + +R F + +L + ++V D+L ++L++ K A+ Sbjct: 269 EKNQWGKNFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQAL 328 Query: 200 EAL 202 + + Sbjct: 329 DRM 331 >gi|118411059|ref|YP_874454.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum] gi|125987629|sp|A0T0H9|RK4_PHATC RecName: Full=50S ribosomal protein L4, chloroplastic gi|116739806|gb|ABK20677.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum] Length = 215 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ + L +R S SK RSEV G K + QKGTG+AR S ++GGG FG Sbjct: 37 LVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFG 96 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKECKTKYLVTRFR--ALD 147 P P L KK R LAL+ + +K N+I++I+NL E KTK V + ++ Sbjct: 97 PKPKKISLKLNKKERQLALQTLIYNK--KNNILIIENLETGMTEPKTKAFVKICQDCQIN 154 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L +++ +LA +N+ N+ LL +N IL+ +++L+ +AI +++ + Sbjct: 155 LEQKVLLVVTDKTSVLKLATQNLKNVELLAASSLNTLSILKARQIILTSAAINHIKESY 213 >gi|225677501|gb|EEH15785.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb03] Length = 263 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RG Sbjct: 66 LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 125 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSK-ECKTKYLVTRF 143 GG A GP P LPKK+ LA R ALS ++ ++++ DN+ + +L F Sbjct: 126 GGVAHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVF 185 Query: 144 RALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 +L+I + +R F + +L + ++V D+L ++L++ K A+ Sbjct: 186 EKNQWGKSFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQAL 245 Query: 200 EAL 202 + + Sbjct: 246 DRM 248 >gi|71902235|ref|ZP_00684242.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1] gi|71728009|gb|EAO30223.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1] Length = 202 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ D + VS+ +F + + ++ +V+ R G K RS+V+ T Sbjct: 1 MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG AF P + +K A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D + KTK + ++L+L ++L+I ++ L++RN+P +++ VQ Sbjct: 116 RLKVVDAFDVEVSKTKAFAEKIKSLELVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQA 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +VL+ A++ +E+ Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201 >gi|166154742|ref|YP_001654860.1| 50S ribosomal protein L4 [Chlamydia trachomatis 434/Bu] gi|166155617|ref|YP_001653872.1| 50S ribosomal protein L4 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336016|ref|ZP_07224260.1| 50S ribosomal protein L4 [Chlamydia trachomatis L2tet1] gi|226730639|sp|B0B8A1|RL4_CHLT2 RecName: Full=50S ribosomal protein L4 gi|226730641|sp|B0BCG6|RL4_CHLTB RecName: Full=50S ribosomal protein L4 gi|165930730|emb|CAP04227.1| LSU ribosomal protein L1E [Chlamydia trachomatis 434/Bu] gi|165931605|emb|CAP07181.1| LSU ribosomal protein L1E [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 222 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F + ++ + L KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKELGKFELPDAFF-TEGREQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIID---GCQLDRNFQLAARNI 170 + ++V +N V KTK + + ++ L +D + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDSLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + I+ YDI +V+S+ A+E L + Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216 >gi|12045005|ref|NP_072815.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37] gi|255660300|ref|ZP_05405709.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37] gi|1350753|sp|P47398|RL4_MYCGE RecName: Full=50S ribosomal protein L4 gi|3844746|gb|AAC71370.1| ribosomal protein L4/L1 family [Mycoplasma genitalium G37] gi|166078857|gb|ABY79475.1| ribosomal protein L4/L1 family [synthetic Mycoplasma genitalium JCVI-1.0] Length = 211 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 4/211 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +L V DG KG I + + K + + + R G + + EV+ Sbjct: 1 MAKLKVIQFDGSFKGEIQPANHLLLKKAVIQPVFDAILLEQAACRQGTHSTLTKGEVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K Y QK TG+AR S + GGG FGP P L KK LAL A + K Sbjct: 61 GKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPNRNYKLKLNKKAYQLALTSAFAQKLN 120 Query: 120 SNDIMVIDN--LVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLL 176 +N ++V + KTK ++T + L L+ + + L+ N+ I + Sbjct: 121 NNQVIVAEAKLFEQTNAKTKKMLTFLKNAKLTEQKLLFVIDTISKPLLLSTNNLKQIVVK 180 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L +++ K+A LE+R K Sbjct: 181 QFNKVSVRDLLLAKTIIIEKAAFTKLEERLK 211 >gi|7670462|dbj|BAA95082.1| unnamed protein product [Mus musculus] Length = 184 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115 V+ G K + QKG+GRARH S + GGG A GP P + LP KVR+L L+ AL+ Sbjct: 10 VSGGGRKPWQQKGSGRARHGSIRSPLWLGGGVAHGPRGPTSYYYMLPMKVRALGLKVALT 69 Query: 116 DKFCSNDIMVIDNLVSKECKTKYL--VTRFRALDLSNALIID--GCQLDRNFQLAARNIP 171 K +D+ ++D+L +YL + ++R S+ L++D ++ +N A + Sbjct: 70 VKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG-SSVLLVDLTHEEMPKNVVAATSGLN 128 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NL+P G+NVY +L+ LVL+ ++ LED+ Sbjct: 129 SFNLIPAVGLNVYSMLKHQTLVLTLPSVALLEDKL 163 >gi|51209942|ref|YP_063606.1| ribosomal protein L4 [Gracilaria tenuistipitata var. liui] gi|68052933|sp|Q6B8V4|RK4_GRATL RecName: Full=50S ribosomal protein L4, chloroplastic gi|50657696|gb|AAT79681.1| 50S ribosomal protein L4 [Gracilaria tenuistipitata var. liui] Length = 217 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 IL R L Q R + ++ R EV+ G K + QKGTGRAR S +RGGG FG Sbjct: 39 ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFG 98 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKTKYLVTRFR--ALD 147 P V+ + KK + LALR +++KF + +V +N +SK TK LV + LD Sbjct: 99 PRHKKYVNKINKKEKQLALRILINNKFK--NTIVTENFISKISTPNTKILVNNLKKYNLD 156 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N ++I + + L+ RN+ N+ LL +N+ +L+ + ++++K A++ + + Sbjct: 157 TNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIVSLLKANHIIINKDALDIINKMY 215 >gi|259480440|tpe|CBF71574.1| TPA: 50S ribosomal protein L4 (AFU_orthologue; AFUA_5G12800) [Aspergillus nidulans FGSC A4] Length = 287 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 6/197 (3%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + + + ++ IL R + ++ R G + +K R +V + K+Y QKGTG Sbjct: 74 EPVQFVEYARNHLMMPLRKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTG 133 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR K RGGG AFGP P LP+K+ A R ALS ++ +++IDN + Sbjct: 134 RARVGDKKSPIRRGGGVAFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIG 193 Query: 131 SKECKTKYLVTRFRALD-----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 E T Y + + + +I + F+ + +L ++V D Sbjct: 194 IPEDATPYFIKEIFKFNRWGREFGRSTLITDRVHEELFETVRSVGEDAKILDRGDVDVKD 253 Query: 186 ILRCSKLVLSKSAIEAL 202 +L +L++ K A++ + Sbjct: 254 LLETGRLIVEKRALDRI 270 >gi|32266878|ref|NP_860910.1| 50S ribosomal protein L4 [Helicobacter hepaticus ATCC 51449] gi|46577204|sp|Q7VGE3|RL4_HELHP RecName: Full=50S ribosomal protein L4 gi|32262930|gb|AAP77976.1| ribosomal protein L4 [Helicobacter hepaticus ATCC 51449] Length = 207 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + +++ E + ++ L ++ R + +K R EV+ Sbjct: 1 MSKAILLDKKLQQSNELALPERY--AQIKEHNLYLYVKSYLSSLRANSASAKKRGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL AL K Sbjct: 59 GKKPWKQKGGGRARAGSITSPVFVGGGVSHGPSNDKNYTLKINKKQKRLALECALFQKAQ 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + V+D+L KTK F+AL + L + D LA RN+ L Sbjct: 119 EGKLFVVDSLAMPSGKTKDAYAMFKALKQRSTLFV-AQMSDEPTFLAFRNLQQCYLADAN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + +V+ K+ + + Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDEI 200 >gi|29839862|ref|NP_828968.1| 50S ribosomal protein L4 [Chlamydophila caviae GPIC] gi|46577224|sp|Q824Q0|RL4_CHLCV RecName: Full=50S ribosomal protein L4 gi|29834209|gb|AAP04846.1| ribosomal protein L4 [Chlamydophila caviae GPIC] Length = 224 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 12/214 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + G G + + + F + ++ L KR + ++ RSEV++ Sbjct: 1 MVLLSKFDFSGNKAGEVELPDAFFVQEGNGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P H + +K + A+R LS K Sbjct: 61 STKKPFKQKGTGNARQGCLASPQFRGGGVVFGPKPKFDQHVRINRKEKRAAIRLLLSQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARN 169 +N ++V D+ V KTK + + ++ L ID Q + +L+ RN Sbjct: 121 QTNRLIVADDSVFTSSLASPKTKEALRFLKSCNVECRGILFIDDLDHAQNNEGLRLSLRN 180 Query: 170 IPNINLLPV-QGINVYDILRCSKLVLSKSAIEAL 202 + + IN YD+ +V+S+ A++ L Sbjct: 181 LSAVRGFTYGMNINGYDLASARNVVISEKALKGL 214 >gi|15605256|ref|NP_220042.1| 50S ribosomal protein L4 [Chlamydia trachomatis D/UW-3/CX] gi|76789264|ref|YP_328350.1| 50S ribosomal protein L4 [Chlamydia trachomatis A/HAR-13] gi|237802956|ref|YP_002888150.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/Jali20/OT] gi|237804878|ref|YP_002889032.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/TZ1A828/OT] gi|7674296|sp|O84532|RL4_CHLTR RecName: Full=50S ribosomal protein L4 gi|109893586|sp|Q3KLH0|RL4_CHLTA RecName: Full=50S ribosomal protein L4 gi|3328964|gb|AAC68128.1| L4 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX] gi|76167794|gb|AAX50802.1| LSU ribosomal protein L1E [Chlamydia trachomatis A/HAR-13] gi|231273178|emb|CAX10091.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/TZ1A828/OT] gi|231274190|emb|CAX10984.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/Jali20/OT] gi|296436060|gb|ADH18234.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9768] gi|296436988|gb|ADH19158.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11222] gi|296437921|gb|ADH20082.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11074] gi|297140421|gb|ADH97179.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9301] Length = 222 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F + ++ + L KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + I+ YDI +V+S+ A+E L + Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216 >gi|296420041|ref|XP_002839589.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635772|emb|CAZ83780.1| unnamed protein product [Tuber melanosporum] Length = 285 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 10/188 (5%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R G + +K R +V +G K+ QKG+GRAR K RG Sbjct: 99 LPTRRDILHRAITYEGDAARSGNANTKWRGDVHGSGRKIRPQKGSGRARLGDKKSPMLRG 158 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GG A GP P LPKK+ +LA R A S ++ ++V+++ L + + + Sbjct: 159 GGVAHGPKPRDFSTDLPKKMYNLAWRTAFSYRYRRGQLIVVEDALEIQANDPGLANSIIK 218 Query: 145 ALDL----SNALIIDGCQLDRNFQLAARNI--PNINLLPVQGINVYDILRCSKLVLSKSA 198 S +L I + NF A + + +L + ++V D+L ++V+ + A Sbjct: 219 KNGWGNENSRSLFIVNEERP-NFMGAMEGLGSEGL-VLTKEEVDVKDLLEMGRIVIEREA 276 Query: 199 IEAL-EDR 205 +E ++R Sbjct: 277 LEWFRKER 284 >gi|255311345|ref|ZP_05353915.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276] gi|255317646|ref|ZP_05358892.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276s] Length = 222 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F + ++ + L KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDTFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P + KK R A+R L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + I+ YDI +V+S+ A+E L + Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216 >gi|156097819|ref|XP_001614942.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803816|gb|EDL45215.1| hypothetical protein, conserved [Plasmodium vivax] Length = 535 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 12/211 (5%) Query: 3 ELSVRNL----DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS--E 56 E+ V D E+ +SV DIF L + IL + + G ++ E Sbjct: 124 EIPVYKFECSPDDENIKYVSVPNDIFGLPIRPDILHKCYYFYRTAL-AGYTERMQLYKWE 182 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + K QK +G+AR + + G K P + +K+ ++ LS Sbjct: 183 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWRGMKIILSA 242 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIP 171 KF + I V+DN + K KTKY V R + + ++AL++ ++ NF A NI Sbjct: 243 KFAQDQIKVVDNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIA 302 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ VQG+N+Y++L+ +V + A++ L Sbjct: 303 SVKRENVQGVNIYNLLKYRFVVFTYKALQNL 333 >gi|215400771|ref|YP_002327532.1| ribosomal protein L4 [Vaucheria litorea] gi|194441221|gb|ACF70949.1| ribosomal protein L4 [Vaucheria litorea] Length = 220 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 5 SVRNLDGEDKGVISVS-EDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ N + E+ ++++ + K + +L R L+ Q +R G S +K R+EV G Sbjct: 13 TLTNDNKENITTLTLNIPKHYESKINKSNYLLHRALQTQLTNERQGTSNTKTRAEVQGGG 72 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +RGGG FGP + + +K L+LR L +K Sbjct: 73 RKPWKQKGTGRARAGSNRSPLWRGGGVIFGPKIKKFSNKINRKEWRLSLRLLLLNK--QK 130 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +I +I+ + KTK ++ L + L+I D N + +N+ N+ LL Sbjct: 131 NITIINTIFLDFFKTKNIIQYILKLGIDPLQKLVIIIPNYDENLRRGTKNLKNVQLLKAN 190 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 +N+ DIL+ + + ++++ +E+ + Sbjct: 191 CLNIKDILKAEHIFIDINSLKIIEETY 217 >gi|148377808|ref|YP_001256684.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2] gi|148291854|emb|CAL59244.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2] Length = 300 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 3/191 (1%) Query: 19 VSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++ +FA + + +R G K R+EV G K + QKGTGRAR S Sbjct: 111 LNPKLFASDKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGS 170 Query: 78 KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + GGG+AFGP P + KKVR A L+ + +V+D+ + T Sbjct: 171 TRSPIWVGGGRAFGPTPVRNYKLKVNKKVRFNAFVSVLT-LLAQSKAVVVDDFKLESIST 229 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + + L + I D + N+ N+ + ++V +++ LVLS Sbjct: 230 KAAINKLSELGIKEQKHILIATNDEVTYKSVANLQNVICVKPTSVSVENLIWADVLVLST 289 Query: 197 SAIEALEDRFK 207 E E R K Sbjct: 290 EGYENFEGRIK 300 >gi|304373189|ref|YP_003856398.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1] gi|304309380|gb|ADM21860.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1] gi|330723951|gb|AEC46321.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis MCLD] Length = 295 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFA-LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++++ N +S+ ++F + + + ++ +R K K R+EV+ T Sbjct: 96 AKVNITN-------KVSLPNELFGKTEIHSQAIFDTILYERGSRRNPTHKVKSRAEVSGT 148 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKGTG+AR S F GGG+AFGP L KKVR LA ALS Sbjct: 149 GKKPWKQKGTGKARAGSLRSPIFVGGGRAFGPTNNKNYKIKLNKKVRKLAFASALSQLAQ 208 Query: 120 SNDIMVIDNLVSKECKTKYLVTRF---RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 +N +++ + KE TK LV + + +L N LII L+ARN+ N+ + Sbjct: 209 NNQ-VLVSDFAQKEISTKTLVKKLASEKLNELKNVLIISSSSE---LFLSARNLQNVKVT 264 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 I V D+++ ++S+S I+ LE RFK Sbjct: 265 KWSSILVEDLVKADVFIISESDIKNLEGRFK 295 >gi|282891948|ref|ZP_06300427.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498208|gb|EFB40548.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 227 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 20/226 (8%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M L V ++ G + G + V + ++ + R + +KGRSEV ++ Sbjct: 1 MALLKVFDIKGNEVGELEVDSTFAEAQINSQVVKDYVTALRANARQWSANTKGRSEVKHS 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119 K + QKG GRAR S Q+RGGG+ FGP P H + KK R +R + +K Sbjct: 61 TKKPHPQKGGGRARQGSLVAPQYRGGGRVFGPKPKFDQHVRINKKERKAVIRFLIGEKIR 120 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------------------QLD 160 +N + V+ + +E KTK++ +S + G + Sbjct: 121 NNALTVVQDFHMEEPKTKHVADFLEKQGISGRTLFIGEGNFVQVGNDNDGKKVSVRCEQH 180 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 NF + RN+ I ++ YD++ +++ SA+E L++ Sbjct: 181 DNFIKSIRNLQKIEFALTSHVSGYDVIVAKNMIVGASALEQLKEWL 226 >gi|255348904|ref|ZP_05380911.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70] gi|255503444|ref|ZP_05381834.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70s] gi|255507123|ref|ZP_05382762.1| 50S ribosomal protein L4 [Chlamydia trachomatis D(s)2923] gi|289525572|emb|CBJ15050.1| LSU ribosomal protein L1E [Chlamydia trachomatis Sweden2] gi|296435132|gb|ADH17310.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/150] gi|296438852|gb|ADH21005.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/11023] Length = 222 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F + ++ + L KR + ++GRSEV+++ Sbjct: 1 MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P + KK R A++ L+ K Sbjct: 60 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIQLLLAQKIQ 119 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 120 TGKLIVAENSVFISSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + I+ YDI +V+S+ A+E L + Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216 >gi|156058474|ref|XP_001595160.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980] gi|154701036|gb|EDO00775.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980 UF-70] Length = 211 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 6/184 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ +L R + ++ R G + SK R +V + K+ QKGTG AR K G Sbjct: 16 LPLRRDLLHRAVIFEGDNTRQGTASSKTRWDVHGSHRKVRPQKGTGSARLGWKQSPLIVG 75 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GGK+FGP P LP+K+ +A R ALS ++ ++V ++ + + KT+Y F Sbjct: 76 GGKSFGPHPRDFGTDLPRKMYDIAWRTALSWRYRRGQLIVCEDGMTFEYPKTRYAKKVFE 135 Query: 145 ALDLSN---ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 L +I +N + + + +L V ++V D+L S++V+ KSA++ Sbjct: 136 DLGWGKQNGRTLIVTDGFRKNLS-SVVDKHDATVLEVSDVDVKDLLELSRVVIEKSALDH 194 Query: 202 L-ED 204 + E+ Sbjct: 195 ILEE 198 >gi|71276485|ref|ZP_00652760.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon] gi|170729701|ref|YP_001775134.1| 50S ribosomal protein L4 [Xylella fastidiosa M12] gi|226731448|sp|B0U5A8|RL4_XYLFM RecName: Full=50S ribosomal protein L4 gi|71162662|gb|EAO12389.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon] gi|167964494|gb|ACA11504.1| 50S ribosomal protein L4 [Xylella fastidiosa M12] Length = 204 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 8/208 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ D + VS+ +F + + ++ +V+ R G K RS+V+ T Sbjct: 1 MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG AF P + +K A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + V+D + KTK + ++L + ++L+I ++ L++RN+P +++ V Sbjct: 116 RLKVVDAFDVEVSKTKVFAEKIKSLEVVGVGSSLLIVSDEISECLSLSSRNLPCVDVRSV 175 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 Q ++ ++ +VL+ A++ +E+ Sbjct: 176 QALDPVALVGSDVVVLTVGAVKKIEEWL 203 >gi|309799059|ref|ZP_07693312.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302] gi|308117294|gb|EFO54717.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302] Length = 149 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 75/139 (53%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 KGTGRAR S Q+RGGG FGP P + LP+KVR LAL+ S+K N + +D Sbjct: 10 KGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVD 69 Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +L KT AL + + +++ + + L+ARN+PN+ + +V DI Sbjct: 70 SLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATTASVLDIA 129 Query: 188 RCSKLVLSKSAIEALEDRF 206 KL+++++AI +E+ Sbjct: 130 NSDKLLVTQAAISKIEEVL 148 >gi|297748657|gb|ADI51203.1| LSU ribosomal protein L1E ( L4P) [Chlamydia trachomatis D-EC] gi|297749537|gb|ADI52215.1| LSU ribosomal protein L1E (L4P) [Chlamydia trachomatis D-LC] Length = 231 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M+ LS + G++ G + + F + ++ + L KR + ++GRSEV+++ Sbjct: 10 MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 68 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119 K + QKGTG AR + QFRGGG FGP P + KK R A+R L+ K Sbjct: 69 TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 128 Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIIDG---CQLDRNFQLAARNI 170 + ++V +N V KTK + + ++ L +DG + N +L+ RN+ Sbjct: 129 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 188 Query: 171 PNINLLPV-QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + I+ YDI +V+S+ A+E L + Sbjct: 189 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 225 >gi|71033543|ref|XP_766413.1| hypothetical protein [Theileria parva strain Muguga] gi|68353370|gb|EAN34130.1| hypothetical protein, conserved [Theileria parva] Length = 439 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 25/224 (11%) Query: 3 ELSVRNLD-------GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 EL V + E + V DIF L + IL R ++ R + G S+ Sbjct: 89 ELPVYVFEYYDRKDVKEAIRYLRVPNDIFGLPLRPDILHRCYQFYR-RAKAGYSEDMQLY 147 Query: 56 --EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK------VRS 107 E + K Q+ TG+AR K G A P + ++ R Sbjct: 148 KWEWPGSTKKWRKQQKTGKARIGWKKSPGKYMGVFAHPLRPHDNRTKIQRRSTLIFLTRF 207 Query: 108 LALRH----ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALII--DGCQ 158 LAL LS KF + I V+D+ + KTKY V R + ++AL++ Sbjct: 208 LALYTGLKIMLSAKFAQSQIQVVDSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGVSD 267 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + NF+ + NIP++ V+G+NVY++L+ +LV++++A++ L Sbjct: 268 SNENFRWSTANIPSVRRETVEGVNVYNLLKYRQLVITQAALKKL 311 >gi|330444114|ref|YP_004377100.1| 50S ribosomal protein L4/L1 family [Chlamydophila pecorum E58] gi|328807224|gb|AEB41397.1| ribosomal protein L4/L1 family [Chlamydophila pecorum E58] Length = 224 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 12/218 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIF-ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M+ LS + GE G + VS+ F + ++ L KR + +K RSEV++ Sbjct: 1 MVLLSKFDFSGEKTGEVEVSDSFFVQEEGGLQLVKDYLTAIRANKRQWSANTKNRSEVSH 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKF 118 + K + QKGTG AR + QFRGGG FGP P + +K R A+R LS K Sbjct: 61 STKKPFKQKGTGNARQGCLAAPQFRGGGIVFGPRPKFDQHTRINRKERRAAIRLLLSQKI 120 Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFR--ALDLSNALIID---GCQLDRNFQLAARN 169 ++V ++ V + KT+ + + ++ L ID +L++N +L+ RN Sbjct: 121 QFEKLIVAEDSVFISSLQAPKTREALQFLKRCGVECRGVLFIDHLAHVELNQNLRLSLRN 180 Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + + +N YD+ +V+S+ A++ L R Sbjct: 181 LSALRGFVYGINLNGYDLAAAHNVVISEKALQDLSKRL 218 >gi|254456203|ref|ZP_05069632.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp. HTCC7211] gi|207083205|gb|EDZ60631.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp. HTCC7211] Length = 207 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 117/207 (56%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L ++DG+ I V + IF+ K +++ VL + + +K+K ++EV+ Sbjct: 1 MKLEKFSIDGKK-DTIEVLDKIFSAKINSKLVSSVLYKTNANYKGRHAKTKQQNEVSGPT 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 SK+Y QKGTG ARH+S+ F GGG A GP + L K + L++ +++K Sbjct: 60 SKIYAQKGTGGARHASRKAPIFVGGGIAHGPKGELAYKKRKLNKNEKKLSVASLITEKNK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 +++++++ S+ KTK + + L++SN+LII + +ARNIPN+ + V Sbjct: 120 HKNLLILNDFSSEIKKTKEMNAIIQKLEISNSLIILDKSSKEKIEKSARNIPNVKVTDVN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + YDI++ K+V ++S+++ LE R+ Sbjct: 180 HFSSYDIIKFKKVVFTESSVKELEKRY 206 >gi|47459071|ref|YP_015933.1| 50S ribosomal protein L4 [Mycoplasma mobile 163K] gi|81614326|sp|Q6KI54|RL4_MYCMO RecName: Full=50S ribosomal protein L4 gi|47458400|gb|AAT27722.1| 50S ribosomal protein l4 [Mycoplasma mobile 163K] Length = 293 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 11/215 (5%) Query: 3 ELSVRNLDGEDKG------VISVSEDIFAL---KPQQGILARVLRWQSWRKRIGCSKSKG 53 ++ V + + +S+ + IF L K + + ++ +R G +K Sbjct: 80 KIKVLSSKTNEAKNILFKNTVSLPKGIFGLSEEKINTQAIFDSILFERASQRQGTHSTKT 139 Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 RSEV+ G K + QKGTGRAR S + GGG FGP P + KKVR+LA Sbjct: 140 RSEVSGGGKKPWKQKGTGRARAGSTRSPIWVGGGITFGPKPQKKYDFKINKKVRNLAFLS 199 Query: 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 +L+ N I+V ++L ++ ++ L+ + L ++N I D + RN+ N Sbjct: 200 SLTLLANKNAILV-EDLKLEKISSQELIKKLEDLKINNLKKILIVSDDEKIFKSGRNVQN 258 Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++++ + + V + L+LSK + LE R K Sbjct: 259 LHVVKLNSLTVELLNETHALLLSKKDLTTLESRVK 293 >gi|224437284|ref|ZP_03658256.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] gi|313143739|ref|ZP_07805932.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] gi|313128770|gb|EFR46387.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818] Length = 207 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + +++ E + ++ L ++ R +++K R EV+ Sbjct: 1 MSKAILLDNKLQRSSELALPERY--TQIKEHNLYLYVKSYLASLRANNARAKKRGEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL AL K Sbjct: 59 GKKPWNQKGGGRARAGSITSPVFVGGGVSHGPSNDRSYNLKINKKQKRLALECALHQKAQ 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + VID++ KTK F+AL + L + D LA RN+ L Sbjct: 119 EGKLFVIDSVAMPSGKTKDAYAMFKALKQRSTLFV-AQMSDEPTFLAFRNLQQCYLADAN 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + +V+ K+ + + Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDEI 200 >gi|293977932|ref|YP_003543362.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri DMIN] gi|292667863|gb|ADE35498.1| Ribosomal protein L4 [Candidatus Sulcia muelleri DMIN] Length = 205 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 I VI++ KTK + L+ + +I +++ NF ++RN+ N L + Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNIKKSLIIYNKINDNFFFSSRNLKFTNFLSINE 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y++ LV +SAI+ + Sbjct: 181 LNSYELANSDYLVFFESAIKKI 202 >gi|28198354|ref|NP_778668.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1] gi|182680995|ref|YP_001829155.1| 50S ribosomal protein L4 [Xylella fastidiosa M23] gi|46577239|sp|Q87E81|RL4_XYLFT RecName: Full=50S ribosomal protein L4 gi|226731447|sp|B2I8H0|RL4_XYLF2 RecName: Full=50S ribosomal protein L4 gi|28056424|gb|AAO28317.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1] gi|182631105|gb|ACB91881.1| ribosomal protein L4/L1e [Xylella fastidiosa M23] gi|307579464|gb|ADN63433.1| 50S ribosomal protein L4 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 202 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 98/206 (47%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ D + VS+ +F + + ++ +V+ R G K RS+V+ T Sbjct: 1 MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVSGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG AF P + +K A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D + KT+ + ++L+ + ++L+I ++ L++RN+P +++ VQ Sbjct: 116 RLKVVDAFDVEVSKTRVFAEKIKSLEVVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQA 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +VL+ A++ +E+ Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201 >gi|84998326|ref|XP_953884.1| hypothetical protein [Theileria annulata] gi|65304881|emb|CAI73206.1| hypothetical protein, conserved [Theileria annulata] Length = 464 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 25/224 (11%) Query: 3 ELSVRNLD-------GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55 EL V + E + V DIF L + IL R ++ R + G S+ Sbjct: 89 ELPVYVFEYYDRKDVKEAIRYLRVPNDIFGLPIRPDILHRCYQFYR-RAKAGYSEDMQLY 147 Query: 56 --EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS------ 107 E + K Q+ +G+AR K G A P + ++ + Sbjct: 148 KWEWPGSTKKWRKQQKSGKARIGWKKSPGKYVGVFAHPLRPKDNRTKIQRRSKLVFLIRF 207 Query: 108 ----LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALII--DGCQ 158 L+ LS KF + I V+D+ + KTKY V R + ++AL++ Sbjct: 208 LALYTGLKIMLSAKFAQSQIQVVDSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGLSD 267 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + NF+ + NIP++ V+G+NVY++L+ +LV+++SA+ L Sbjct: 268 SNENFRWSTANIPSVRRETVEGVNVYNLLKYRQLVITQSALRKL 311 >gi|307720137|ref|YP_003891277.1| 50S ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294] gi|306978230|gb|ADN08265.1| LSU ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294] Length = 204 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + V N E +++ E + P L ++ +R + +KGRSEV G Sbjct: 1 MSAIVLNEKMEKASELALPEAFSGINPHN--LYLYVKSAQAAQRANTATTKGRSEVRGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120 K + QKG GRAR S+ F GGGKAFG + KK + LAL AL++ + Sbjct: 59 KKPWAQKGGGRARAGSRRSPIFVGGGKAFGSKNNHNYDLKVNKKQKKLALNFALNEHAQN 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D++ + KTK F+AL + L + LD LA N+ ++ Sbjct: 119 GTLFIVDSISVESGKTKDAAAMFKALGQRDTLFVKSL-LDEPTFLAFENLHQTYVVESNE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y +V+ K+ E L Sbjct: 178 LNAYLAANYRSIVIEKAVWETL 199 >gi|313681320|ref|YP_004059058.1| LSU ribosomal protein l4p [Sulfuricurvum kujiense DSM 16994] gi|313154180|gb|ADR32858.1| LSU ribosomal protein L4P [Sulfuricurvum kujiense DSM 16994] Length = 203 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + V N E ++ E + P L ++ R + +K RS ++ G Sbjct: 1 MSAIVLNEKFEKASEAALPESFSGINPHN--LYLYVKSYQASIRANTASAKTRSMISGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG G AR S+ F GG A GP + KK + LAL+ AL + Sbjct: 59 KKPWAQKGKGGARAGSRRSPIFVGGAIAHGPNTGRNYDQKINKKQKKLALKCALDALAQA 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D + KTK F L++ +AL++ LD N LA RNI + ++ Sbjct: 119 GKLFIVDTIEVPSGKTKDAKVLFDKLNVRDALLV-KKILDENTYLAFRNISSTYVVEENE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N + +V+ K+ E L Sbjct: 178 LNAFLAATYRSVVIEKAVWENL 199 >gi|159477929|ref|XP_001697061.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii] gi|158274973|gb|EDP00753.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii] Length = 124 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 65/124 (52%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65 + +LD G+ + F + + IL RV+R+ + + G K+K R+EV+ G K + Sbjct: 1 IYSLDERPLGLAPLPGAAFNVPVRIDILHRVVRYWRAKWQQGTHKAKSRAEVSGGGKKPW 60 Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QK TGRAR S ++GGG + P P HALP+ R L +R ALS K V Sbjct: 61 NQKKTGRARQGSIRSPLWKGGGVSHAPRPRSHAHALPRSTRLLGMRCALSAKINEGRFFV 120 Query: 126 IDNL 129 +D+L Sbjct: 121 VDDL 124 >gi|237751235|ref|ZP_04581715.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879] gi|229372601|gb|EEO22992.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879] Length = 204 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 4/206 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + +++ E + ++ L ++ R +++K R +V+ Sbjct: 1 MSKAIMLDGRFAKGAEVALPERY--AEIKEHNLYLYVKSYLASLRANNAQAKTRGKVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL +AL K Sbjct: 59 GKKPWAQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKINKKQKRLALEYALQQKAN 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + +I+++ + KTK +F+AL + L + + LA RN+ + L Sbjct: 119 EGKLFIIESINVESGKTKDAFAQFKALGQRSTLFVTQVS-NEKTFLAFRNLQSCYLADAS 177 Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205 +N Y + +V+ K+ + L R Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDELVKR 203 >gi|291320505|ref|YP_003515769.1| 50S ribosomal protein L4 [Mycoplasma agalactiae] gi|290752840|emb|CBH40815.1| 50S ribosomal protein L4 [Mycoplasma agalactiae] Length = 300 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 3/191 (1%) Query: 19 VSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77 ++ +FA + + +R G K R+EV G K + QK TGRAR S Sbjct: 111 LNPKLFASDKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKVTGRARAGS 170 Query: 78 KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 + GGG+AFGP P + KKVR A AL+ + +V+D+ + T Sbjct: 171 TRSPIWVGGGRAFGPTPVRNYKLKVNKKVRFNAFVSALT-LLAQSKAVVVDDFKLESIST 229 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196 K + + L + I D + N+ N+ + ++V +++ LVLS Sbjct: 230 KAAINKLSELGIKEQKHILIATNDEVTYKSVANLQNVICVKPTSVSVENLIWADVLVLST 289 Query: 197 SAIEALEDRFK 207 E E R K Sbjct: 290 EGYENFEGRIK 300 >gi|193216760|ref|YP_002000002.1| 50S ribosomal protein L4 [Mycoplasma arthritidis 158L3-1] gi|193002083|gb|ACF07298.1| ribosomal protein L4 [Mycoplasma arthritidis 158L3-1] Length = 260 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 3/188 (1%) Query: 18 SVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++ + +F L+ P + + + KR+ K+K R+EV+ TG K + QKGTG AR Sbjct: 70 TLPKSVFGLEKPYNQAVFDTILSERGAKRLATHKTKTRAEVSGTGKKPWAQKGTGNARAG 129 Query: 77 SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S F GGG+ FGP P + KKVR AL A ++ +++ +++ + Sbjct: 130 SMRSPIFVGGGRVFGPTPERNYHLKVNKKVRKNALFTA-LSALAASQAVLVKDIMMTKPS 188 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 T+ ++ L+ + D N L+ARN+PN+ + V ++V ++R LV+S Sbjct: 189 TRDMLVELTKEKLNALNYVLIVSNDENVYLSARNLPNVEVTRVTSLSVESLVRADALVIS 248 Query: 196 KSAIEALE 203 K +IE LE Sbjct: 249 KESIEWLE 256 >gi|67541346|ref|XP_664447.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4] gi|40739052|gb|EAA58242.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4] Length = 200 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 6/182 (3%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 ++ IL R + ++ R G + +K R +V + K+Y QKGTGRAR K RGG Sbjct: 2 PLRKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGG 61 Query: 87 GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRA 145 G AFGP P LP+K+ A R ALS ++ +++IDN + E T Y + Sbjct: 62 GVAFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIGIPEDATPYFIKEIFK 121 Query: 146 LD-----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + + +I + F+ + +L ++V D+L +L++ K A++ Sbjct: 122 FNRWGREFGRSTLITDRVHEELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALD 181 Query: 201 AL 202 + Sbjct: 182 RI 183 >gi|322712679|gb|EFZ04252.1| 60S ribosomal protein L4 [Metarhizium anisopliae ARSEF 23] Length = 342 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 26/207 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL + ++ R G + SK R EV + K+ QKG+GRAR ++ RG Sbjct: 113 LPLRRDILHHAITFEGDNTRQGTASSKTRYEVHGSHRKVRPQKGSGRARLGTRQSPVLRG 172 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID---------NLVS----- 131 GGK FGP P L +KV A R ALS ++ ++++ + + Sbjct: 173 GGKTFGPKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKY 232 Query: 132 ------KECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPN-INLLPVQG 180 + KY+ R L L A L + G +R A +P L V+ Sbjct: 233 MRDGLRETYLQKYMTGVLRTLGLGRADGRTLFVTGDPRER-LYEAMEQVPWEGRALDVED 291 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L K+V+ +S ++ + +R + Sbjct: 292 VDVKDLLETGKVVMERSVLKEMIERHQ 318 >gi|15829058|ref|NP_326418.1| 50S ribosomal protein L4 [Mycoplasma pulmonis UAB CTIP] gi|46577287|sp|Q98PY2|RL4_MYCPU RecName: Full=50S ribosomal protein L4 gi|14090002|emb|CAC13760.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma pulmonis] Length = 292 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 3/192 (1%) Query: 18 SVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++ IF + + + + +R G K K R+EV+ TG K + QKGTG+AR Sbjct: 102 ELNSKIFEFEKNYDQAIFDCILSERASRRQGTHKVKNRAEVSGTGKKPWKQKGTGKARAG 161 Query: 77 SKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S F GGG+AFGP V ++ KKVR AL +L SN +++ ++ Sbjct: 162 SLRNPIFVGGGRAFGPSVNRNYKISINKKVRLNALMASLFALAKSNS-VLLKTFSLEKPS 220 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK LV R ++ SN I D+N L+ARN+ N+ + V + + D++ L+LS Sbjct: 221 TKDLVEELRKINASNLKRILLVSDDKNIFLSARNLKNVKVTKVTSLMIEDLVAADLLILS 280 Query: 196 KSAIEALEDRFK 207 I+ LE K Sbjct: 281 NENIKYLEGLIK 292 >gi|187734814|ref|YP_001876926.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835] gi|187424866|gb|ACD04145.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835] Length = 202 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 4/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + L+ I + + ++ +R G + SK R+EV+ Sbjct: 1 MSANTFTLEAAAAANIQ----VVGSDKGSQAVHDLIVAYQANRRTGSANSKTRAEVSGNN 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K++ QKGTG ARH K F GGG FGP P + K R LALR L D ++ Sbjct: 57 KKIFRQKGTGNARHGDKRAPIFVGGGVVFGPRPCDYSKKVNKSTRRLALRRVLGDLIAAS 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + + + KTK + + L + ++I D AARN+ + L+ + Sbjct: 117 KVSTVSEFSVADGKTKSFIKAVKDLTDAKKVLIVAASFDETTYRAARNVQEVLLMTAAEV 176 Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205 N+ ++ ++L +A+E L R Sbjct: 177 NIEQLMNADAVILVDNALETLASR 200 >gi|152993894|ref|YP_001359615.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1] gi|151425755|dbj|BAF73258.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1] Length = 196 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 2/180 (1%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L+ L + + R +++K RS V+ G K + QKG GRAR S F G Sbjct: 16 LEVHPHNLYLYCKAYASGLRANTAQTKNRSAVSGGGKKPWAQKGGGRARAGSLRSPIFVG 75 Query: 86 GGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GG AFGP + KK + LAL HAL++ + + V+DN+ + KTK + Sbjct: 76 GGVAFGPSTNKNYDQKVNKKQKKLALYHALAELAANERLFVVDNVAIESGKTKDALAFVN 135 Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L+ + L++ +D LA RN+ N L+ +N Y +V+ K+ + L + Sbjct: 136 GLEQRDVLVV-KEMIDDKTFLAFRNLQNAYLVEANELNAYLAAAYHSVVIEKAVFDKLTE 194 >gi|15837755|ref|NP_298443.1| 50S ribosomal protein L4 [Xylella fastidiosa 9a5c] gi|46396661|sp|Q9PE75|RL4_XYLFA RecName: Full=50S ribosomal protein L4 gi|9106117|gb|AAF83963.1|AE003950_13 50S ribosomal protein L4 [Xylella fastidiosa 9a5c] Length = 202 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 6/206 (2%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ D + VS+ +F + + ++ +++ R G K RS+V+ T Sbjct: 1 MDLTIVGSDN----TLPVSDVVFGREFSEALVHQIVVAYRNTARSGTKAQKSRSQVSGTT 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K QKG ARH + + F GGG AF P + +K A+ S+ Sbjct: 57 KKSKKQKGG-GARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + V+D + KTK + ++L+ + + L+I + L++RN+P +++ VQ Sbjct: 116 RLKVVDAFDVEVSKTKVFAEKIKSLEVVGSRLLIVSDGISECLSLSSRNLPCVDVRSVQA 175 Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206 ++ ++ +VL+ A++ +E+ Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201 >gi|322695303|gb|EFY87113.1| 60S ribosomal protein L4 precursor [Metarhizium acridum CQMa 102] Length = 342 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 26/207 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL + ++ R G + SK R EV + K+ QKG+GRAR +K RG Sbjct: 113 LPLRRDILHHAITFEGDNTRQGTASSKTRHEVHGSHRKVRPQKGSGRARLGTKQSPVLRG 172 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID---------NLVS----- 131 GGK FGP P L +KV A R ALS ++ ++++ + + Sbjct: 173 GGKTFGPKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKY 232 Query: 132 ------KECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPN-INLLPVQG 180 + KY+ R L L A L I G +R A +P L V+ Sbjct: 233 MKDGLRETYLQKYMTGVLRTLGLGRADGRTLFITGDPRER-LYEAMEQVPWEGQALDVED 291 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L K+V+ +S ++ + +R + Sbjct: 292 VDVKDLLETGKVVMERSVLKEMIERHQ 318 >gi|296272641|ref|YP_003655272.1| 50S ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299] gi|296096815|gb|ADG92765.1| ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299] Length = 195 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 2/184 (1%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 + F L ++ +R ++ K RSEV G K QKG+G AR SK Sbjct: 13 PETFK-DVNSHNLYLYVKSYLAAQRANTARVKNRSEVRGGGKKPKAQKGSGGARWGSKRS 71 Query: 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV 140 F GGG+ FGP + KK + LALR A++ + V+D++ + KTK V Sbjct: 72 PLFVGGGQVFGPSARNYNQKINKKQKVLALRFAINTHVEKESLFVVDSVTLESGKTKDAV 131 Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 L+ + LII +D LA RNI N ++ Q +N Y +++ KS +E Sbjct: 132 AVINGLNQRDTLIIVDT-IDEKTYLAYRNIKNCYMIEKQEVNAYIAAAYHSILVEKSVLE 190 Query: 201 ALED 204 AL++ Sbjct: 191 ALKE 194 >gi|301633449|gb|ADK87003.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae FH] Length = 212 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 7/213 (3%) Query: 1 MIELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +L + +DG + + +S + A + +Q + + + R G + EV Sbjct: 1 MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118 G K Y QK TG+AR S F GGG FGP P L KK + AL S+K Sbjct: 61 GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120 Query: 119 CSNDIMVIDN--LVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 S++ ++D E KTK +V ++ L N L + L+ N + + NI N+ Sbjct: 121 ASDNTHLVDQNLFNKTEGKTKVMVQFLKSAKLLDKNVLFVVNT-LNTNLEQSTSNIKNVQ 179 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + + ++V D++ + L++ K ++ALE +FK Sbjct: 180 VKHLDKVSVRDLMLANALLVEKEVLKALEGKFK 212 >gi|196228456|ref|ZP_03127323.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428] gi|196227859|gb|EDY22362.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428] Length = 203 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 4/205 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + V ++ I V + K Q ++ + +R G + K ++ V +G Sbjct: 1 MAAKVLTVEAAKAAKIEV---VENGKYSQ-VIHDTVTALRANRRSGTASVKTKATVNGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 +K + QKGTGRAR KS + GGG FGP P + K V+ LALR ALS++ S Sbjct: 57 AKPWRQKGTGRARAGYKSSPVWVGGGVVFGPHPRDYSKKVAKSVKKLALRKALSERIKSG 116 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 D+ ++D KE KTK + ++ D+N L+ARN+ L+ + Sbjct: 117 DVFIVDEFAIKEPKTKQFAAAIALITEEPKTLVVSAAFDKNTYLSARNVQPAQLITASEV 176 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 N +L K+V++ + + DR Sbjct: 177 NTEQLLNFRKIVITNDGLAQIADRL 201 >gi|302896424|ref|XP_003047092.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728020|gb|EEU41379.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 321 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 26/207 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL + ++ R G + +K R E+ + KM QKGTGRAR +K RG Sbjct: 90 LPLRRDILHLAVVFEGDNTRQGTASTKNRWEINGSHRKMRPQKGTGRARLGTKQSPLLRG 149 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID---------NLVSKECK- 135 GGK FGP P L +KV A R ALS ++ D++V + + K Sbjct: 150 GGKVFGPKPRDFGTGLNRKVYDKAWRTALSYRYRKGDLIVCEDGMDLALPTDFELLAGKY 209 Query: 136 ----------TKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPN-INLLPVQG 180 KY+ L L A L + G + A +P L ++ Sbjct: 210 LKDGMKETYLKKYMTGMLGNLGLGRASGRTLFVTGNRR-EALFEAMEQVPWEGRALDLED 268 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L K+VL +S ++ + ++ + Sbjct: 269 VDVKDLLETGKVVLERSVLKEMIEQHQ 295 >gi|315320565|ref|YP_004072622.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005] gi|283569038|gb|ADB27575.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005] Length = 214 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 20/209 (9%) Query: 16 VISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 I +ED+ L + ++ R + Q ++ G +K RSEV G K + QKGTG Sbjct: 6 SIEFNEDVIKLNVLEDSGNYLIHRDILRQQISQKQGTVSTKTRSEVRGGGKKPWQQKGTG 65 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI----- 126 RAR S +RGGG FGP P + V L KK R LA++ L +K +I+V Sbjct: 66 RARAGSSRSPLWRGGGVIFGPKPRMTVLKLNKKERKLAVQTLLYNK--RKNILVSAKLEE 123 Query: 127 --DNLVSKECKTKYLVTRFRA-----LDLSNALIIDGC--QLDRNFQLAARNIPNINLLP 177 L + KTK + + L+ + L++ + F LA RN+ N+ ++ Sbjct: 124 LGKELEFTDNKTKKFYSFCKKELNIDLNKTKLLLVSESSGSASKTFWLATRNLKNVEVIS 183 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +N +L+ +++++ A+ +++ + Sbjct: 184 SANLNTLSLLKAERILITPIALNNIKEIY 212 >gi|46130896|ref|XP_389179.1| hypothetical protein FG09003.1 [Gibberella zeae PH-1] Length = 322 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 26/207 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ +L + ++ R G + +K R +V + KM QKGTGRAR +K RG Sbjct: 91 LPLRRDLLHLAVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRG 150 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-------------- 131 GGK FGP P L +KV A R ALS ++ D++V ++ + Sbjct: 151 GGKTFGPHPRDFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKY 210 Query: 132 ------KECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPN-INLLPVQG 180 + +Y+ L L A L + G + A IP L ++ Sbjct: 211 LKDGLKEAYLKRYMTGVMSNLGLGRAAGRTLFVTGDRR-EALFDAMEQIPWDGRALGIED 269 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L K+VL +S ++ L ++ + Sbjct: 270 VDVKDLLETGKVVLERSVLKELIEKHQ 296 >gi|310794407|gb|EFQ29868.1| ribosomal protein L4/L1 family protein [Glomerella graminicola M1.001] Length = 326 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 31/207 (14%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ +L + ++ R G + +K R EV + K++ QKGTGRAR +K RG Sbjct: 95 LPLRRDLLHLAVVFEGDAARQGTASTKTRWEVRGSHRKLHPQKGTGRARAGTKQSPIRRG 154 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN----------------- 128 GG + GP P L +KV +A R ALS ++ ++V ++ Sbjct: 155 GGVSHGPKPRDFSTRLNRKVYDVAWRTALSYRYRRGQLVVCEDGMELPLPLDFTKLADAG 214 Query: 129 ----LVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDR---NFQLAARNIPNINLLP 177 ++ E + K+++ A + A L + Q R + A L Sbjct: 215 AVGPQIAAEYRRKWMMQVLEANEWGKAHGRTLFVTDGQRPRLWDTMEAAGD---QGRCLD 271 Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204 V ++V D+L ++V+ ++A+ + + Sbjct: 272 VNEVDVKDLLEEGRVVIERTALREMIE 298 >gi|13507905|ref|NP_109854.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae M129] gi|2500234|sp|P75579|RL4_MYCPN RecName: Full=50S ribosomal protein L4 gi|1674370|gb|AAB96313.1| ribosomal protein L4 [Mycoplasma pneumoniae M129] Length = 212 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 7/213 (3%) Query: 1 MIELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +L + +DG + + +S + A + +Q + + + R G + EV Sbjct: 1 MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118 G K Y QK TG+AR S F GGG FGP P L KK + AL S+K Sbjct: 61 GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120 Query: 119 CSNDIMVIDN--LVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNIN 174 S++ ++D E KTK ++ ++ L N L + L+ N + + NI N+ Sbjct: 121 ASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFVVNT-LNTNLEQSTSNIKNVQ 179 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + + ++V D++ + L++ K ++ALE +FK Sbjct: 180 VKHLDKVSVRDLMLANALLVEKEVLKALEGKFK 212 >gi|91763161|ref|ZP_01265125.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002] gi|91717574|gb|EAS84225.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002] Length = 207 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ NLDG+ I V + IF+ K + ++ VL + + +K+K ++E+ + Sbjct: 1 MKIDKLNLDGKK-DSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 SK+Y QKGTG ARH+S+ F GGG A GP + L K + L++ +++K Sbjct: 60 SKIYAQKGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N++++ + ++ KTK + + + +++N+LII + + RNIPN+ + + Sbjct: 120 FNNLIIFSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDIN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + +DI++ K+V ++S+I+ LE R+ Sbjct: 180 HFSAFDIIKFKKVVFTESSIKELEKRY 206 >gi|221053458|ref|XP_002258103.1| hypothetical protein in Apicomplexan species [Plasmodium knowlesi strain H] gi|193807936|emb|CAQ38640.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium knowlesi strain H] Length = 589 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 3 ELSVRNL----DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS--E 56 E+ + D E+ +SV DIF L + IL + + G ++ E Sbjct: 174 EIPIYKFECGPDDENIKYMSVPNDIFGLPIRPDILHKCYYFYRTAL-AGYTERMQLYKWE 232 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + K QK +G+AR + + G K P + +K+ ++ LS Sbjct: 233 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWKGMKIMLSA 292 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIP 171 KF + I V+DN + K KTKY V R + + ++AL++ ++ NF A NI Sbjct: 293 KFAQDQIKVVDNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIV 352 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ V G+N+Y++L+ +V + A++ L K Sbjct: 353 SVKRENVHGVNIYNLLKYRYVVFTYKALQNLIYELK 388 >gi|161833820|ref|YP_001598016.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS] gi|152206310|gb|ABS30620.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS] Length = 207 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178 I VI++ KTK + L+ + +I +++ F ++RN+ N L + Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYNKINDIFFFSSRNLKFTNFLSI 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N Y++ LV +SAI+ + Sbjct: 181 NELNSYELANSDYLVFFESAIKKI 204 >gi|78776488|ref|YP_392803.1| 50S ribosomal protein L4 [Sulfurimonas denitrificans DSM 1251] gi|109893659|sp|Q30TW3|RL4_SULDN RecName: Full=50S ribosomal protein L4 gi|78497028|gb|ABB43568.1| LSU ribosomal protein L4P [Sulfurimonas denitrificans DSM 1251] Length = 204 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 4/202 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + V N E +++ E + P L ++ R + + R+EV G Sbjct: 1 MSAIVLNEKMEKASELALPESFSGINPHN--LYLYVKSAQAAMRANSASALTRAEVRGGG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCS 120 K + QKG GRAR S+ F GGGKAFGP + KK + LAL AL++ Sbjct: 59 KKPWAQKGGGRARAGSRRSPVFVGGGKAFGPKNNRNYDLKVNKKQKKLALNFALNEHAQK 118 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 + ++D++ KTK T F+AL+ + L + LD LA NI + ++ Sbjct: 119 GSLFIVDSIEIASGKTKDAATLFKALNQRDTLFVKTV-LDEKTYLAFENIASTYVIEENE 177 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N Y LV+ K+ E L Sbjct: 178 LNAYLAANYRSLVIEKAVWENL 199 >gi|71083803|ref|YP_266523.1| 50S ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062] gi|109893617|sp|Q4FLL9|RL4_PELUB RecName: Full=50S ribosomal protein L4 gi|71062916|gb|AAZ21919.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062] Length = 207 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ NLDG+ I V + IF+ K + ++ VL + + +K+K ++E+ + Sbjct: 1 MKIDKLNLDGKK-DSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGST 59 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHALSDKFC 119 SK+Y QKGTG ARH+S+ F GGG A GP + L K + L++ +++K Sbjct: 60 SKIYAQKGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNK 119 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N++++ + ++ KTK + + + +++N+LII + + RNIPN+ + + Sbjct: 120 LNNLIIFSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDIN 179 Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206 + +DI++ K+V ++S+I+ LE R+ Sbjct: 180 HFSAFDIIKFKKVVFTESSIKELEKRY 206 >gi|255954255|ref|XP_002567880.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589591|emb|CAP95738.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255] Length = 311 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 9/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + ++ S + + + IL R + ++ R G + +K R +V + K+Y QKG+G Sbjct: 77 EPQRLVHYSRRLLQMPTRHDILHRAVVYEGDSTRQGSASTKWRDDVHGSHKKLYAQKGSG 136 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 RAR K RGGG AFGP P LP+K+ A R ALS + +++V+DN + Sbjct: 137 RARAGDKMSPVRRGGGVAFGPHPRDFSTDLPRKIYDQAWRIALSHRLSRGELIVVDNTID 196 Query: 132 --KECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAAR---NIPNINLLPVQGINVY 184 + ++ +A + + F A N + + V+ ++V Sbjct: 197 INEASSPFFIKNLIQAHGWYHKGRSTFVTLEPNEMFSDAVEKFGN--HARTICVEDLDVK 254 Query: 185 DILRCSKLVLSKSAIEAL 202 ++L ++LV+ K+A+ + Sbjct: 255 NVLERARLVIEKNALHKI 272 >gi|312218629|emb|CBX98574.1| similar to 50S ribosomal protein L4 [Leptosphaeria maculans] Length = 613 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 5/182 (2%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R E+ + K+ QKGTG+AR K RG Sbjct: 115 LPTRRDILHRAIVYEGDNTRLGTASTKTRYEIRGSRKKVRPQKGTGKARLGDKKSPMLRG 174 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRF- 143 GG AFGP P LPKKV A R ALS ++ +++++DN + + ++ L F Sbjct: 175 GGVAFGPRPRDFGTDLPKKVYDRAWRTALSYRYRKGELIIVDNAMEIESPSSRLLEDIFK 234 Query: 144 ---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 + L +L++ Q Q A L + ++V D+L S++++ + A+ Sbjct: 235 HQQKQLGKGRSLLVTLEQRPLLEQALADMDREEQALTWEEVDVKDLLELSRVMIEREALH 294 Query: 201 AL 202 + Sbjct: 295 NI 296 >gi|169625680|ref|XP_001806243.1| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15] gi|160705705|gb|EAT76488.2| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15] Length = 499 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R EV + K+ QKG+GRAR + RG Sbjct: 36 LPTRRDILHRAVVYEGDSTRLGTASTKTRYEVHGSRRKIRPQKGSGRARLGDRKSPMLRG 95 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GG AFGP P LPKKV LA R ALS +F +++++DN + + + L F+ Sbjct: 96 GGVAFGPKPRDFATELPKKVYDLAWRTALSYRFRKGELIIVDNAIEIESPSPRLLGDIFK 155 Query: 145 AL----DLSNALIIDGCQ---LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 +L++ + L+ + R L + ++V ++L S++++ + Sbjct: 156 YHEKIQGRGRSLMVTLEERPLLEDALEQMGR---GGQALTWEEVDVKNLLELSRVMIERD 212 Query: 198 AIEAL 202 A+ + Sbjct: 213 ALHNI 217 >gi|319955857|ref|YP_004167120.1| LSU ribosomal protein l4p [Nitratifractor salsuginis DSM 16511] gi|319418261|gb|ADV45371.1| LSU ribosomal protein L4P [Nitratifractor salsuginis DSM 16511] Length = 197 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 2/178 (1%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L+ L + + R +++K RS V+ G K + QKG GRAR S FRG Sbjct: 17 LEVHPHNLYLYCKAYAANLRANTAQTKNRSAVSGGGKKPFAQKGGGRARQGSIRAPHFRG 76 Query: 86 GGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GG FGP + KK + LAL HAL++K + + V+D++ + KTK Sbjct: 77 GGVVFGPTTDRNYTQKVNKKQKRLALMHALAEKAANEKLFVVDSVAIESGKTKDAKAFVD 136 Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + L++ +D LA RN+ L+ +N Y +V+ K+ + L Sbjct: 137 GFGQRD-LLVVKEMIDEKTFLAFRNLQESYLIEENELNGYLAAAYHAIVMEKAVWDKL 193 >gi|198430347|ref|XP_002122114.1| PREDICTED: similar to mitochondrial ribosomal protein L4 [Ciona intestinalis] Length = 330 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 13/197 (6%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +F P+ IL V+RWQ + + S S+ R+E+ K + QKGTGRARH Sbjct: 95 VQLHPVLFDTHPRMDILHSVVRWQQEYREVDYSWSRTRAEIGRGKKKPWPQKGTGRARHG 154 Query: 77 SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S + + GG + GP P + L L ALS K ND+++I++ + Sbjct: 155 SSNSPLWVKGGISQGPRGPRASFYELNPNTLLDGLLIALSIKHIQNDLIIIESAQISQ-D 213 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN-------INLLPVQGINVYDILR 188 +LS A ++ + N + + +N++P+ G+NV IL+ Sbjct: 214 MPDFDEYLENRNLSEASMLLVHAENENISY----LEHLAEDSKLLNIMPLYGLNVCSILK 269 Query: 189 CSKLVLSKSAIEALEDR 205 KLVLS+ ++ LE + Sbjct: 270 HDKLVLSRCILDELEHK 286 >gi|11465423|ref|NP_045186.1| ribosomal protein L4 [Cyanidium caldarium] gi|46396662|sp|Q9TLT3|RK4_CYACA RecName: Full=50S ribosomal protein L4, chloroplastic gi|6466326|gb|AAF12908.1|AF022186_30 unknown [Cyanidium caldarium] Length = 219 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 ++ RV Q+ R + +K +S+V G K + QKGTGRAR S +RGGG FG Sbjct: 40 VVHRVFSIQNKLSREHTASTKTKSQVRGGGKKPWKQKGTGRARAGSIRSPLWRGGGVVFG 99 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--SKECKTKYLVTRFRALD-- 147 P P + KK LAL LS+ V+ +L T+ L+ R+L+ Sbjct: 100 PKPKNVFFKINKKEIRLALYTVLSNALP--KTTVVSSLEGLPNFISTQALIKFLRSLNVS 157 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 L N ++I + + L+ RNI N+ L+ +NV ++ LV++ A++ + Sbjct: 158 LDNRVLIVVEKKETPLFLSCRNIKNLALIQADHLNVKSVILAQSLVVTLQALKII 212 >gi|261838637|gb|ACX98403.1| ribosomal protein L4 [Helicobacter pylori 51] Length = 215 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKSRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y ++ S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLVAFSSVVMEEAAFQHV 208 >gi|224417886|ref|ZP_03655892.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|253827225|ref|ZP_04870110.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|313141428|ref|ZP_07803621.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491] gi|253510631|gb|EES89290.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491] gi|313130459|gb|EFR48076.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491] Length = 204 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + G + + E L ++ R + +K R V+ Sbjct: 1 MSKAIILDNGLKKSGELQLPESY--KAINSHNLYLYIKSFLASMRANNAMAKTRGRVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K ++QKG GRAR S + F GGG + GP + KK + LAL++AL +K Sbjct: 59 GKKPWIQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKAD 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + V+D + KTK F+ L+ N L++ D LA RN+ N L+ Sbjct: 119 NGSLFVVDKIQIPSGKTKDANAMFKTLNQRNVLLV-SEMFDEKTYLAFRNLKNCYLIDGA 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +V+ K+ EA+ Sbjct: 178 ELNAYLAATFRSVVIEKALFEAI 200 >gi|86153018|ref|ZP_01071223.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843903|gb|EAQ61113.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni HB93-13] Length = 190 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 4/186 (2%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++ V N E G + + + L ++ R + +KGRS+V+ G Sbjct: 1 KVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGGGK 58 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 KPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAAKG 118 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D+L + KTK T + L + +ALI+ LD LA RN+ N ++ V + Sbjct: 119 ALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVTEV 177 Query: 182 NVYDIL 187 N Y ++ Sbjct: 178 NAYLVI 183 >gi|208435215|ref|YP_002266881.1| ribosomal protein L4 [Helicobacter pylori G27] gi|226730673|sp|B5Z8W6|RL4_HELPG RecName: Full=50S ribosomal protein L4 gi|208433144|gb|ACI28015.1| ribosomal protein L4 [Helicobacter pylori G27] Length = 215 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSMELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHI 208 >gi|94502244|ref|ZP_01308730.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451215|gb|EAT14154.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 207 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++++ N G + G + F K IL ++ +R G +KSK RSE+ + Sbjct: 1 MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P + K + LA + L+ K +N Sbjct: 61 KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIIINNKSKFLAKKTILNFKLRTN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178 I VI++ KTK + L+ + +I +++ F ++RN+ N L + Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYNKINDIFFFSSRNLKFTNFLSI 180 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 +N Y++ LV +SAI+ + Sbjct: 181 NELNSYELANSDYLVFFESAIKKI 204 >gi|82540371|ref|XP_724509.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23479172|gb|EAA16074.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 605 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 3 ELSVRNLDGED----KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS--E 56 E+ + + ++ I++ DIF + + IL + + G ++ E Sbjct: 204 EIPIYKFESDENDNNIKFITIPNDIFGVPIRSDILHKCYYFYRTAL-AGYTERMQLYKWE 262 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + K QK +G+AR + + G K P + +K+ ++ LS Sbjct: 263 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSA 322 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIP 171 KF + I V+DN + K KTKY V R + ++AL++ ++ NF A NI Sbjct: 323 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIA 382 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 +I V+G+N+Y++L+ +V + A++ L K Sbjct: 383 SIKRENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 418 >gi|317014709|gb|ADU82145.1| 50S ribosomal protein L4 [Helicobacter pylori Gambia94/24] Length = 215 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNERNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ +AL + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDALFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAI 199 ++ V +N Y + S +V+ ++A Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAF 205 >gi|124512344|ref|XP_001349305.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium falciparum 3D7] gi|23499074|emb|CAD51154.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium falciparum 3D7] Length = 568 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 3 ELSVRNLDGED----KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS--E 56 E+ + + ++ ISV DIF L + IL + + G ++ E Sbjct: 174 EIPIYKFEADENDDNIKYISVPNDIFGLPIRSDILHKCYYFYRTAL-AGYTERMQLYKWE 232 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + K QK +G+AR + + G K P + +K ++ LS Sbjct: 233 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQKTNINRKFLWKGMKILLSA 292 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIP 171 KF + I V+DN + K KTKY V R + + ++AL++ ++ NF A NI Sbjct: 293 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGKNCNSALLVHEGKTDVNDNFLWACANIA 352 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 ++ V+G+N+Y++L+ +V + A++ + K Sbjct: 353 SVKRENVEGVNIYNLLKYRYVVFTYKALKNIIYELK 388 >gi|148927109|ref|ZP_01810739.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1] gi|147887428|gb|EDK72872.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1] Length = 199 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 7/193 (3%) Query: 18 SVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 ++ + +FA+ P +L R + +K R EV G K + QKGTGRAR Sbjct: 5 TLPKTVFAVDVPNHELLKLAYEAYLAEARTSAASTKKRGEVRGGGRKPHKQKGTGRARAG 64 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 S +RGGG FGP L K + +A+R AL+ + I+ D VS K Sbjct: 65 SIRSPLWRGGGVTFGPSGNENYKKQLNVKAKRVAVRQALTLAAQAGKIITAD--VSATGK 122 Query: 136 TKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 TK + + D+ L++ + A N+ NI L+ ++V+ +L K++ Sbjct: 123 TKDMTAFLKDQKADVRRTLLVVSEKSPE-LIRATGNLQNIELVRATYLSVFHVLNADKII 181 Query: 194 LSKSAIEALEDRF 206 ++ +AI A+E Sbjct: 182 MTPTAITAIEAWL 194 >gi|261840033|gb|ACX99798.1| 50S ribosomal protein L4 [Helicobacter pylori 52] Length = 215 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDDKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|317013105|gb|ADU83713.1| 50S ribosomal protein L4 [Helicobacter pylori Lithuania75] Length = 215 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208 >gi|315304964|ref|ZP_07875049.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596] gi|313626666|gb|EFR95714.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596] Length = 109 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 61/108 (56%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M +LS+ DG + G I++++ +F ++P + ++ V+ Q R G K K RSEV Sbjct: 1 MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108 G K + QKGTGRAR S Q+RGGG FGP P + LPKKV Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVXXH 108 >gi|68072025|ref|XP_677926.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498222|emb|CAH98556.1| conserved hypothetical protein [Plasmodium berghei] Length = 557 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 12/216 (5%) Query: 3 ELSVRNLDGED----KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS--E 56 E+ + + ++ I++ DIF + + IL + + G ++ E Sbjct: 196 EIPIYKFESDENDNNIKFITIPNDIFGVPIRSDILHKCYYFYRTAL-AGYTERMQLYKWE 254 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + K QK +G+AR + + G K P + +K+ ++ LS Sbjct: 255 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSA 314 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIP 171 KF + I V+DN + K KTKY V R + ++AL++ ++ NF A NI Sbjct: 315 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIA 374 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 +I V+G+N+Y++L+ +V + A++ L K Sbjct: 375 SIKRENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 410 >gi|15612303|ref|NP_223956.1| 50S ribosomal protein L4 [Helicobacter pylori J99] gi|7674310|sp|Q9ZJR5|RL4_HELPJ RecName: Full=50S ribosomal protein L4 gi|4155815|gb|AAD06789.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pylori J99] Length = 215 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CLNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|189218696|ref|YP_001939337.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4] gi|226730687|sp|B3E0I5|RL4_METI4 RecName: Full=50S ribosomal protein L4 gi|189185554|gb|ACD82739.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4] Length = 222 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 90/179 (50%) Query: 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88 + +L L R G +K ++ V +G K + QKGTGRAR S + GGG Sbjct: 29 RDQVLHDALVGYLANSRSGTRATKTKATVKASGKKPWRQKGTGRARAGYVSSPVWVGGGV 88 Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148 FGP P +PKK++ LAL A + K S ++ ++ + E KTK +++ D Sbjct: 89 VFGPQPRDFSKNIPKKIKGLALLKAFAAKVRSEEVYCLEKVEMTEIKTKKMLSLLEGWDG 148 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 + ++ RN L+ RNIP++ ++ Q +N D+L K+ L + AIE L +R K Sbjct: 149 KESGLLILKNPSRNVLLSGRNIPHLGIVRAQDVNALDLLGFKKVFLERPAIEVLVERVK 207 >gi|188528106|ref|YP_001910793.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470] gi|217033635|ref|ZP_03439063.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10] gi|308183428|ref|YP_003927555.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4] gi|226730674|sp|B2UV81|RL4_HELPS RecName: Full=50S ribosomal protein L4 gi|188144346|gb|ACD48763.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470] gi|216943981|gb|EEC23415.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10] gi|297380499|gb|ADI35386.1| 50S ribosomal protein L4 [Helicobacter pylori v225d] gi|308065613|gb|ADO07505.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4] gi|317178057|dbj|BAJ55846.1| 50S ribosomal protein L4 [Helicobacter pylori F16] gi|317178391|dbj|BAJ56179.1| 50S ribosomal protein L4 [Helicobacter pylori F30] gi|317181040|dbj|BAJ58826.1| 50S ribosomal protein L4 [Helicobacter pylori F32] Length = 215 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|308185070|ref|YP_003929203.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180] gi|308060990|gb|ADO02886.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|325996594|gb|ADZ51999.1| 50S ribosomal protein L4 [Helicobacter pylori 2018] gi|325998184|gb|ADZ50392.1| 50S ribosomal protein L4 [Helicobacter pylori 2017] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAI 199 ++ V +N Y + S +V+ ++A Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAF 205 >gi|210135475|ref|YP_002301914.1| 50S ribosomal protein L4 [Helicobacter pylori P12] gi|226730672|sp|B6JNF6|RL4_HELP2 RecName: Full=50S ribosomal protein L4 gi|210133443|gb|ACJ08434.1| 50S ribosomal protein L4 [Helicobacter pylori P12] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFNNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAI 199 ++ V +N Y + S +V+ ++A Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAF 205 >gi|308062603|gb|ADO04491.1| 50S ribosomal protein L4 [Helicobacter pylori Cuz20] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSTRANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|317182564|dbj|BAJ60348.1| 50S ribosomal protein L4 [Helicobacter pylori F57] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLVAAFSSVVMEEAAFQHV 208 >gi|221486254|gb|EEE24515.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 625 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72 G + + DIF L + IL R + R G ++ + E + K+ Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCYWFYR-RAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ ++ NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|237833509|ref|XP_002366052.1| 50S ribosomal protein L4, putative [Toxoplasma gondii ME49] gi|211963716|gb|EEA98911.1| 50S ribosomal protein L4, putative [Toxoplasma gondii ME49] Length = 625 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72 G + + DIF L + IL R + R G ++ + E + K+ Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCYWFYR-RAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ ++ NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|297613186|ref|NP_001066789.2| Os12g0488600 [Oryza sativa Japonica Group] gi|255670313|dbj|BAF29808.2| Os12g0488600 [Oryza sativa Japonica Group] Length = 346 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K Y QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + Sbjct: 173 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 232 Query: 123 IMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V ++L KTK +V+ + D L++DG +D+ +LA +N+ +N+LP G+ Sbjct: 233 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 292 Query: 182 NVYDILRCSKLVL 194 NVY IL+ L L Sbjct: 293 NVYSILQHDTLWL 305 >gi|71894652|ref|YP_278760.1| 50S ribosomal protein L4 [Mycoplasma synoviae 53] Length = 201 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 2/180 (1%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 + Q + + + +R G + K R+ V+ +G K + QKGTGRARHSS+ + GG Sbjct: 18 EVHQQAIFDSILSERASRRQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGG 77 Query: 87 GKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145 G+AFGP + KKV+ LA R AL+ ++ +++++ + TK L + ++ Sbjct: 78 GRAFGPQSVKNYSLKVNKKVKQLAFRSALTMLV-NDKAVLVEDFKMDKISTKDLSQKLKS 136 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 L++ + + ++ N+ N+ L +NV ++R L++ +++ L +R Sbjct: 137 LNVDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 196 >gi|307637989|gb|ADN80439.1| LSU ribosomal protein L4p:L1e [Helicobacter pylori 908] Length = 215 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 12/208 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSIISPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAI 199 ++ V +N Y + S +V+ ++A Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAF 205 >gi|221508042|gb|EEE33629.1| 50S ribosomal protein L4, putative [Toxoplasma gondii VEG] Length = 625 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72 G + + DIF L + IL R + R G ++ + E + K+ Q+ +GR Sbjct: 211 GCVVLPNDIFGLPLRPDILYRCYWFYR-RAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329 Query: 133 ECKTKYLVTRFRAL---DLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R L +AL++ ++ NF+ A +I + V+GINVY++L Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 390 KYRQLVITEKALLKL 404 >gi|312601075|gb|ADQ90330.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 168] Length = 214 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%) Query: 18 SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +F +P + + + KR+ K K R+EV+ TG K + QK TG+AR Sbjct: 25 DLPKSLFEQKEPHFQAIFDAILSERASKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAG 84 Query: 77 SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 SK F GGG+AFGP + KKV+ LA ALS N +++++ + Sbjct: 85 SKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFISALSQLA-QNQQILVNDFSMNKIS 143 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK LV + + + I D N L+ARN+PN+ L+ + V +++ L++S Sbjct: 144 TKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIIS 203 Query: 196 KSAIEALEDR 205 K+ I LE R Sbjct: 204 KNEITNLEKR 213 >gi|254779860|ref|YP_003057966.1| 50S ribosomal protein L4 [Helicobacter pylori B38] gi|254001772|emb|CAX30003.1| 50S ribosomal subunit protein L4 [Helicobacter pylori B38] Length = 215 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|308064095|gb|ADO05982.1| 50S ribosomal protein L4 [Helicobacter pylori Sat464] Length = 215 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSARANTAKSKNRTEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|325118901|emb|CBZ54453.1| putative 50S ribosomal protein L4 [Neospora caninum Liverpool] Length = 766 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 8/195 (4%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72 G + + DIF L + IL R + R G ++ + E + K+ Q+ +GR Sbjct: 376 GCVVLPNDIFGLALRPDILYRCYWFYR-RAIAGWTERMQLFKWEWPGSKRKLRPQQRSGR 434 Query: 73 ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 AR + G KA P + K++ L+ LS KF I V+D+ + Sbjct: 435 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQIKVVDHFNLQ 494 Query: 133 ECKTKYLVTRFR---ALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 KTK+ V R +AL++ ++ NF+ A +I + V+G+NVY++L Sbjct: 495 SHKTKHCVRHLRRILGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGVNVYNLL 554 Query: 188 RCSKLVLSKSAIEAL 202 + +LV+++ A+ L Sbjct: 555 KYRQLVITEKALLKL 569 >gi|15645931|ref|NP_208110.1| 50S ribosomal protein L4 [Helicobacter pylori 26695] gi|2500233|sp|P56032|RL4_HELPY RecName: Full=50S ribosomal protein L4 gi|2314480|gb|AAD08357.1| ribosomal protein L4 (rpl4) [Helicobacter pylori 26695] Length = 215 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRY--ESINSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|320592223|gb|EFX04662.1| 50S ribosomal protein l4 [Grosmannia clavigera kw1407] Length = 339 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 45/248 (18%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V + + + S L ++ +L + ++ R G + +K R +V + Sbjct: 68 VTVLAFPSLEPRSVEMWSAQHLHLPLRRDLLHLAVVYEGDNTRQGTASTKTRYDVHGSHR 127 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 KM QKGTG AR S+ RGGGK+FGP P L +KV A R ALS ++ + Sbjct: 128 KMRPQKGTGSARLGSRQSPLIRGGGKSFGPQPRDFGTDLNRKVYDRAWRTALSYRYRRGE 187 Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLS-------------------------------- 149 ++V ++ L + LD Sbjct: 188 LVVCEDGLELPLPDAFLQAAQAGVLDRELEDGFVRRYVGSLLQGQADNFGTNTIGTIGTI 247 Query: 150 ---------NALIIDGCQLDRNFQLAAR-NIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 I + N + + L V ++V D+L ++V+ ++A+ Sbjct: 248 GQAWGHASGRTTFITSDRRP-NLFTSLEAAGEHGRALTVDDVDVKDLLETGRIVVERAAL 306 Query: 200 EALEDRFK 207 + +R + Sbjct: 307 RYIIERHQ 314 >gi|321310979|ref|YP_004193308.1| 50S ribosomal protein L3 [Mycoplasma haemofelis str. Langford 1] gi|319802823|emb|CBY93469.1| ribosomal protein L4 [Mycoplasma haemofelis str. Langford 1] Length = 213 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 3/209 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDI-FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 M +S+ + G+ KG + I + + + ++ +R G +K +SEV+ Sbjct: 1 MKPISIFSASGDIKGSFELPASIILPDEIHSHAIFEAVNCENQNRRQGTHDTKNKSEVSG 60 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118 TG K Y QK TGRAR S+ QFRGGG AFGP P V + +KV LA A F Sbjct: 61 TGKKPYRQKHTGRARQGSRRNPQFRGGGVAFGPSPMRNYVVGVNRKVSRLAFASAWKGIF 120 Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFR-ALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 S +I ++D S KTK A S L++ + + L +RN+ N+ Sbjct: 121 ESENIALLDESFSSLKKTKEFQEFLGKAKLDSKKLLLLDKESASSVFLVSRNLSNVTCRD 180 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 +V D++ S L+L+K A++ L +R Sbjct: 181 FFHCSVRDLMNQSFLLLTKEAMDLLCERL 209 >gi|108563688|ref|YP_628004.1| 50S ribosomal protein L4 [Helicobacter pylori HPAG1] gi|122386212|sp|Q1CRU2|RL4_HELPH RecName: Full=50S ribosomal protein L4 gi|107837461|gb|ABF85330.1| ribosomal protein L4 [Helicobacter pylori HPAG1] Length = 215 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CLNMDECTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208 >gi|317010001|gb|ADU80581.1| 50S ribosomal protein L4 [Helicobacter pylori India7] Length = 215 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNQRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 ++ + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ADKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|237753022|ref|ZP_04583502.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430] gi|229375289|gb|EEO25380.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430] Length = 204 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + G + E L ++ R + +K R V+ Sbjct: 1 MSAAIILDKNLKKSGEAQLPESY--KDINSHNLYLYIKSFLASMRANNAIAKTRGRVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG A GP + KK + LAL++AL +K Sbjct: 59 GKKPWNQKGGGRARAGSITSPVFVGGGVAHGPSNNKNYNLKVNKKQKRLALQYALMEKAN 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + ++D + + KTK F+AL+ N L + D LA RNI + L+ Sbjct: 119 NGSLFIVDKIQVESGKTKDAYMMFKALNQRNTLFV-SELFDEKTFLAFRNIKDCYLIDGV 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y + +V+ KS E++ Sbjct: 178 ELNAYLVATFRSVVIEKSLFESI 200 >gi|315587207|gb|ADU41588.1| ribosomal protein L4/L1 family protein [Helicobacter pylori 35A] Length = 215 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRY--ESINSHNLYLYVKHYLSSARANTAKSKNRTEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVSELNAYLVAAFSSVVMEEAAFQHV 208 >gi|47094373|ref|ZP_00232067.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b H7858] gi|47017255|gb|EAL08094.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b H7858] Length = 149 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 55 SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114 ++V + K + S Q+RGGG FGP P + LPKKVR LA++ L Sbjct: 3 ADVNHGVKKYRSCPSS------SIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSIL 56 Query: 115 SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 S K ++V++ L KTK + + + +I N +L+ARN+ I Sbjct: 57 SSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGIT 116 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++P + I+V ++ + KL+++K+A+E +E+ Sbjct: 117 VIPAESISVLEVAKHDKLIITKAAVEKVEEVL 148 >gi|148887418|sp|Q4A5C2|RL4_MYCS5 RecName: Full=50S ribosomal protein L4 gi|144575209|gb|AAZ44049.2| 50S ribosomal protein L4 [Mycoplasma synoviae 53] Length = 229 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 2/180 (1%) Query: 27 KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86 + Q + + + +R G + K R+ V+ +G K + QKGTGRARHSS+ + GG Sbjct: 46 EVHQQAIFDSILSERASRRQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGG 105 Query: 87 GKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145 G+AFGP + KKV+ LA R AL+ ++ +++++ + TK L + ++ Sbjct: 106 GRAFGPQSVKNYSLKVNKKVKQLAFRSALTMLV-NDKAVLVEDFKMDKISTKDLSQKLKS 164 Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 L++ + + ++ N+ N+ L +NV ++R L++ +++ L +R Sbjct: 165 LNVDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 224 >gi|71893545|ref|YP_278991.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J] gi|72080532|ref|YP_287590.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448] Length = 206 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%) Query: 18 SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +F +P + + + KR+ K K R+EV+ TG K + QK TG+AR Sbjct: 17 DLPKSLFEQKEPHFQAIFDSILSERASKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAG 76 Query: 77 SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 SK F GGG+AFGP + KKV+ LA ALS N +++++ + Sbjct: 77 SKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFISALSQLA-QNQQILVNDFSMNKIS 135 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK LV + + + I D N L+ARN+PN+ L+ + V +++ L++S Sbjct: 136 TKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIIS 195 Query: 196 KSAIEALEDR 205 K+ I LE R Sbjct: 196 KNEITNLEKR 205 >gi|54020071|ref|YP_115701.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 232] gi|81603667|sp|Q601L4|RL4_MYCH2 RecName: Full=50S ribosomal protein L4 gi|148887158|sp|Q4A8H2|RL4_MYCH7 RecName: Full=50S ribosomal protein L4 gi|148887159|sp|Q4AAE1|RL4_MYCHJ RecName: Full=50S ribosomal protein L4 gi|53987244|gb|AAV27445.1| 50s ribosomal protein L4 [Mycoplasma hyopneumoniae 232] gi|144227504|gb|AAZ44280.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J] gi|144575315|gb|AAZ53567.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448] Length = 214 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%) Query: 18 SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + +F +P + + + KR+ K K R+EV+ TG K + QK TG+AR Sbjct: 25 DLPKSLFEQKEPHFQAIFDSILSERASKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAG 84 Query: 77 SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135 SK F GGG+AFGP + KKV+ LA ALS N +++++ + Sbjct: 85 SKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFISALSQLA-QNQQILVNDFSMNKIS 143 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 TK LV + + + I D N L+ARN+PN+ L+ + V +++ L++S Sbjct: 144 TKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIIS 203 Query: 196 KSAIEALEDR 205 K+ I LE R Sbjct: 204 KNEITNLEKR 213 >gi|19113019|ref|NP_596227.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces pombe 972h-] gi|74626916|sp|O74801|RL4P_SCHPO RecName: Full=60S ribosomal protein yml6, mitochondrial gi|3687498|emb|CAA21166.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces pombe] Length = 261 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + + ++ IL R + +++ R G + SK R+E+ +G K+Y QKGTG Sbjct: 17 EPASLFLIPGSFLQERFRRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTG 76 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 AR S RGG K+ GP P L +V +LA+R ALS +F +N++ +++N + Sbjct: 77 HARVGDASSPIRRGGAKSHGPKPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPIN 136 Query: 131 SKECKTKYLVTRFR----ALDLSNALIIDGCQ-------LDRNFQLAARNI-PNINLLPV 178 + KT+ L+ + + AL + + N LA+R + + + +PV Sbjct: 137 LSQPKTRILLEVLKQHKLGHEYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPV 196 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 V D L+ KL + A+ + ++F Sbjct: 197 GEFQVRDALKFGKLFIDSEAMSLIVEKF 224 >gi|242309320|ref|ZP_04808475.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489] gi|239523891|gb|EEQ63757.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 4/203 (1%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + + + G + E L ++ R + +K R V+ Sbjct: 1 MSKAIILDKELKKSGEAQLPESY--KSINSHNLYLYIKSFLASMRANNAMAKTRGRVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + GP + KK + LAL++AL +K Sbjct: 59 GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKAD 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 + + ++D + KTK T F+ L+ N L + D A RN+ L+ Sbjct: 119 NGSLFIVDKIQIPSGKTKDAYTMFKTLNQRNILFV-SEMFDEKTYFAFRNLKECYLIDGA 177 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N Y +V+ K+ EA+ Sbjct: 178 ELNAYLAATFRAVVIEKALFEAI 200 >gi|217032071|ref|ZP_03437571.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128] gi|298735657|ref|YP_003728182.1| 50S ribosomal protein L4 [Helicobacter pylori B8] gi|216946219|gb|EEC24827.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128] gi|298354846|emb|CBI65718.1| large subunit ribosomal protein L4 [Helicobacter pylori B8] gi|317011518|gb|ADU85265.1| 50S ribosomal protein L4 [Helicobacter pylori SouthAfrica7] Length = 215 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208 >gi|258567164|ref|XP_002584326.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237905772|gb|EEP80173.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 301 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 36 VLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI 95 + ++ R G + +K RSEV + K+ QKGTGRAR K RGGG A GP P Sbjct: 114 AVVYEGDMTRQGTASTKWRSEVRGSRKKVRPQKGTGRARLGDKKSPMLRGGGVAHGPHPR 173 Query: 96 IGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKE-CKTKYLVTRFRALDLSNA-- 151 LP+K+ A R ALS ++ ++++ DN+ + YL F D Sbjct: 174 DFSTELPRKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTSVHYLKEIFDRNDWGRKFG 233 Query: 152 --LIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 L+I + ++ F+ + I + +L + ++V D+L +L++ K A++ + Sbjct: 234 RSLLITELKKEKLFE-SVEQIGEDARVLDREDVDVKDLLETGRLIVEKMALDRM 286 >gi|307128706|ref|YP_003880736.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI] gi|306483168|gb|ADM90038.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI] Length = 208 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 1/202 (0%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++L++ N +G G + K I+ ++ + +R G +KSK RSE+ + Sbjct: 1 MKLTIFNNNGIKTGRCLKFKKNLLKKENNNIIYLEIKRFLFSQRQGTNKSKERSEITGST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+G AR FR GG+ FGP P L K ++ ++ ++ K N Sbjct: 61 RKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNYNFKLNKNLKRRVIKDIINLKLKKN 120 Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-DRNFQLAARNIPNINLLPVQG 180 +I ++++ K KTK + + L+++N I+ + + F L+ +N+ +I +L + Sbjct: 121 NIKILEDFDDKIIKTKLVFNLIKKLNINNKKILIIYDIYKKKFFLSYKNLKSIKILSINE 180 Query: 181 INVYDILRCSKLVLSKSAIEAL 202 +N + + L+ +SAI+ + Sbjct: 181 LNSFHLANADYLIFFESAIKKI 202 >gi|207091946|ref|ZP_03239733.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_AG0C1] gi|207108255|ref|ZP_03242417.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_CA4C1] Length = 215 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSVELPKRYEGI--NSHNLYLYVKHYLSSVRANSAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + TK F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFV-CLNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ ++A + + Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208 >gi|293363474|ref|ZP_06610230.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris A21JP2] gi|292552823|gb|EFF41577.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris A21JP2] Length = 288 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 6 VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V+++ + + ++FA + + + + +R G + K R++V+ TG K Sbjct: 86 VKSVANKVTFESKLPAELFASEKIYEQAIFDTILSDRASRRQGTHQVKNRAQVSGTGKKP 145 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QKGTGRAR S F GGG+AFGP + KKVR A AL+ ++ Sbjct: 146 WRQKGTGRARTGSLRTPVFVGGGRAFGPQSERNYSLKVNKKVRFAAFVSALT-LLANDKA 204 Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 + ID+L + TK LV + L L++ + D +A N+ N+ + ++V Sbjct: 205 VAIDDLKLSKISTKDLVAKLTKLKLNDVRHVLVVTEDELVFKSAANLANVVTVKPNSLSV 264 Query: 184 YDILRCSKLVLSKSAIEALEDRFK 207 ++ +V+S++ ++ LE + K Sbjct: 265 ELLVSADVMVISQAGLKVLEGKAK 288 >gi|330927709|ref|XP_003301969.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1] gi|311322926|gb|EFQ89938.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1] Length = 565 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 5/196 (2%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + L ++ IL R + ++ R+G + +K R EV + K+ QKGTG Sbjct: 68 EPLRFEQYPANHLNLPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTG 127 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 AR + RGGG AFGP P LPKKV LA R ALS +F +++++DN + Sbjct: 128 HARLGDRMSPMLRGGGVAFGPKPRDFASELPKKVYDLAFRTALSYRFRKGELIIVDNAME 187 Query: 131 SKECKTKYLVTRFRA----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + T+ L FR +L++ + Q + ++V + Sbjct: 188 LESPSTRLLADIFRYHEKLRGRGRSLMVTLEERPLLEQALLDMDRRKQAILWDQVDVKYL 247 Query: 187 LRCSKLVLSKSAIEAL 202 L S++++ + A+ + Sbjct: 248 LELSRVIIERDALHNI 263 >gi|39943994|ref|XP_361534.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15] gi|145014730|gb|EDJ99298.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15] Length = 342 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 42/237 (17%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +++ + E + + L ++ +L + ++ R G + SK + +V + Sbjct: 82 VTIYDFPSLEPLTLEAWPTKHLDLPFRRDLLHLAVTYEGDGTRQGTASSKTKWDVHGSHR 141 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K QKGTG AR K RGGGK+ GP P + KV LA R ALS ++ + Sbjct: 142 KQAPQKGTGNARVGWKQSPLRRGGGKSHGPHPRDFSTRMNHKVYDLAWRTALSYRYRRGE 201 Query: 123 IMVIDNLVSKECKTKYLVTR----------------------FRALDLSN----ALIIDG 156 + V+ + + L + + Sbjct: 202 LFVVRDGSLDMPLPADFLALAAEGRLGRELEDGFVDRMVRETLNPLGWGKEGGRSTFVVS 261 Query: 157 CQLDRNFQLAAR-NI--------PNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 C A R N+ L V ++V DIL ++V+ + A++ L + Sbjct: 262 CD------KAGRPNLFSSLEIAQKEARALEVDDVDVKDILETGRIVIERRALKRLIE 312 >gi|189207547|ref|XP_001940107.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976200|gb|EDU42826.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 575 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 17/188 (9%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ R+G + +K R EV + K+ QKGTG AR + RG Sbjct: 92 LPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTGHARLGDRMSPMLRG 151 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GG AFGP P LPKKV LA R ALS +F +++++DN + + T+ L FR Sbjct: 152 GGVAFGPKPRDFSSELPKKVYDLAFRTALSYRFRKGELIIVDNAMELESPSTRLLADIFR 211 Query: 145 A----LDLSNALIIDGCQLDRNFQLAARNIPNINL------LPVQGINVYDILRCSKLVL 194 +L++ + + A +++ + ++V +L S++++ Sbjct: 212 HHEKLWGRGRSLMVTLEERP-LLEQAL-----VDMDRRKQAILWNKVDVKYLLELSRIII 265 Query: 195 SKSAIEAL 202 + A++ + Sbjct: 266 ERDALQNI 273 >gi|307069691|ref|YP_003878168.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia insecticola CARI] gi|306482951|gb|ADM89822.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia insecticola CARI] Length = 208 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 1/187 (0%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 +IF ++ +V+ R SK K RSEV + K++ QKGTGRAR + S Sbjct: 20 NNIFNYPYNLSLIHQVIISYLSNNRKIISKQKNRSEVKHNKKKLWKQKGTGRARVGNISS 79 Query: 81 SQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139 +RGGGK F + KK+ +++ LS N +++++N + KTK + Sbjct: 80 PLWRGGGKIFPNTSNENYRKKINKKMYKISISSILSQLNRENRLLILNNFLIDNFKTKNI 139 Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + + + + + +L+ N + +N+ NI + + IN ++ K++L ++ + Sbjct: 140 LKKINKITYKKSSLFILDKLNFNILYSFKNLYNIFFIYINKINPISLINFQKIILMENTL 199 Query: 200 EALEDRF 206 ++ Sbjct: 200 YKIQKWL 206 >gi|294155416|ref|YP_003559800.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145] gi|291600321|gb|ADE19817.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145] Length = 360 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 3/193 (1%) Query: 17 ISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75 + ++FA + + + + +R G + K R++V+ TG K + QKGTGRAR Sbjct: 169 AKLPSELFASEKIYEQAIFDTILSDRASRRQGTHQVKNRAQVSGTGKKPWRQKGTGRART 228 Query: 76 SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134 S F GGG+AFGP + KKVR A AL+ ++ + ID+L + Sbjct: 229 GSLRTPVFVGGGRAFGPQSEKNYSLKVNKKVRYAAFVSALT-LLANDKAVAIDDLKLNKI 287 Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 TK LV + L +++ I D +A N+ N+ + ++V ++ +V+ Sbjct: 288 STKELVKKLTTLKINDVRHILIVTEDETLFKSAANLSNVVTVKPHSLSVELLIAADVMVI 347 Query: 195 SKSAIEALEDRFK 207 SK++++ LE + K Sbjct: 348 SKNSLKVLEGKIK 360 >gi|109946760|ref|YP_663988.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba] gi|123362794|sp|Q17ZD7|RL4_HELAH RecName: Full=50S ribosomal protein L4 gi|109713981|emb|CAJ98989.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba] Length = 215 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 12/211 (5%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + V + ++KG + + + + L ++ R +KSK R+EV+ Sbjct: 1 MSKAIVLDSHLKEKGSMELPKRYEGI--NSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG GRAR S + F GGG + G + KK + LAL +AL +K Sbjct: 59 GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118 Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 +N + V++ + K + K F+AL+ + L + +D +LA N+ Sbjct: 119 ANKLFVVEKIAIKGVVEYNKRKHLAKEANKMFQALEQRDTLFV-CMNMDEYTELAFSNLK 177 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ V +N Y + S +V+ + A + + Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEVAFQHV 208 >gi|26554464|ref|NP_758398.1| 50S ribosomal protein L4 [Mycoplasma penetrans HF-2] gi|46577268|sp|Q8EUB4|RL4_MYCPE RecName: Full=50S ribosomal protein L4 gi|26454474|dbj|BAC44802.1| ribosomal protein L4 [Mycoplasma penetrans HF-2] Length = 213 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 6/212 (2%) Query: 1 MIELSVRNLDGEDKGVISVSED---IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57 M + + + + + I K + + + R + + ++EV Sbjct: 1 MSSVKLFKDLLGNTETVELKNKKLFISDKKINHQEIFNSVLVEEANSRQSTASTLTKAEV 60 Query: 58 AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116 G K Y QK TGRAR S + GGG+AFGP P K LA + A++ Sbjct: 61 RGGGRKPYKQKHTGRARQGSIRNPHYVGGGRAFGPSPEKNYTLKQNSKAYKLAFQSAMTL 120 Query: 117 KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNIN 174 K + ++++ + KE TK + + + N ++ + NF + +NI + Sbjct: 121 KLNEQGLNLLVNKIDMKEPSTKTISKMLKKVSYENKKVLFVINDKNENFLKSCKNIQKVT 180 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++V DIL V+ + A + + + F Sbjct: 181 SKMWNQVSVRDILNSDIAVIQEDAFDKISEVF 212 >gi|46399688|emb|CAF23137.1| putative 50S ribosomal protein L4 [Candidatus Protochlamydia amoebophila UWE25] Length = 196 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 20/194 (10%) Query: 33 LARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP 92 + + R + +K R+EV +T K + QKG GRARH S Q+RGGG+AFGP Sbjct: 2 IKDYIVALRANARQWSASTKTRAEVKHTTKKAHPQKGQGRARHGSTVAPQYRGGGRAFGP 61 Query: 93 VPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151 P H + KK R A+R LS+K N + +I++ KTK L R DL Sbjct: 62 RPKFDQHVRINKKERKAAIRFLLSEKLKENKVWLIEDTAMDAPKTKTLAQFLRGFDLRGR 121 Query: 152 LIIDGC-------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 ++ G +F + RN+P N + IN YD++ ++ Sbjct: 122 VLFLGETTFTDVETEGKVQRVSISTDKHNHFVKSMRNLPRANFMLASNINGYDVMIAREI 181 Query: 193 VLSKSAIEALEDRF 206 VL++SA+ L Sbjct: 182 VLTESALNELNQWL 195 >gi|77409987|ref|ZP_00786569.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1] gi|77171403|gb|EAO74690.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1] Length = 109 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 54/105 (51%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M + + + G++ + ++E IF ++P + ++ V+ Q R G K RS V+ Sbjct: 1 MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKV 105 G K + QKGTGRAR S Q+RGGG FG P + L KV Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYGYKLXXKV 105 >gi|116199351|ref|XP_001225487.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51] gi|88179110|gb|EAQ86578.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51] Length = 319 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 31/205 (15%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL + ++ + R G + SK R EV + K+ QKG+GRAR K +G Sbjct: 89 LPLRRDILHLAVVYEGDKTRQGTASSKTRFEVHGSHRKLRPQKGSGRARVGIKQSPLMKG 148 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144 GGK FGP P L +KV LA R ALS ++ +++V ++ L + + Sbjct: 149 GGKTFGPKPRDFSTKLNRKVYDLAWRTALSYRYRRGELIVTEDGLELPLPEEFLQLAESG 208 Query: 145 ALDLS------------------------NALIIDGCQLDRNFQ---LAARNIPNINLLP 177 A+ I G + F +A N L Sbjct: 209 AMGRELEDSFISKYVGELMTALQWDKDNGRTTFITGDRRPNLFTGLDIAGEN---GRALE 265 Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202 ++ ++V D+L ++V+ ++A+ + Sbjct: 266 LEDVDVKDLLETGRIVIERTALREM 290 >gi|171692683|ref|XP_001911266.1| hypothetical protein [Podospora anserina S mat+] gi|170946290|emb|CAP73091.1| unnamed protein product [Podospora anserina S mat+] Length = 326 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 25/207 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL + ++ R G +++K R EVA + K+ QKG+GRAR +K RG Sbjct: 87 LPLRRDILHLAVVYEGDNTRQGTAQAKTRWEVAGSHRKVRPQKGSGRARVGNKQSPLQRG 146 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKT-------- 136 GGK+ GP L +KV LA R ALS ++ +++V ++ L + Sbjct: 147 GGKSHGPRNRDFGTKLNRKVYDLAWRTALSYRYRRGELIVTEDGLDLPLPEDFLQQAQDG 206 Query: 137 ------------KYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQG 180 KY+ A+ A I G + F N L ++ Sbjct: 207 LLTRELEDAFIEKYVGEMLGAMQWGKAHGRTTFITGEERMNLFTAMGVAGENGRALELED 266 Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207 ++V D+L ++V+ S ++ + R + Sbjct: 267 VDVKDLLETGRIVVESSVLKEMIKRHR 293 >gi|85081598|ref|XP_956751.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora crassa OR74A] gi|28917827|gb|EAA27515.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora crassa OR74A] gi|38566840|emb|CAE76146.1| related to ribosomal protein YML6, mitochondrial [Neurospora crassa] Length = 349 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 32/230 (13%) Query: 4 LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V + + E + + S S L ++ IL + ++ R G + +K R EV + Sbjct: 91 VTVYSFPELEPRSLESYSARHLHLPLRRDILHLAVIYEGDSTRRGMASTKTRYEVHGSHK 150 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 KM QKGTG AR ++ +GGGK FGP P L KKV LA R ALS ++ + Sbjct: 151 KMSPQKGTGNARRGTRQSPLMKGGGKTFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGE 210 Query: 123 IMVIDN-LVSKECKT--------------------KYLVTRFRALDLSN----ALIIDGC 157 ++V ++ L K++ +L+ I G Sbjct: 211 LIVTEDGLDLPLPNDFLWLAGGGKLSRELEDGYVRKWVHEFMTSLNWGKEAGRTTFITGD 270 Query: 158 QLDR---NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + F+LA L + ++V D+L ++V+ +SA++ + + Sbjct: 271 KRPNLFTGFELAG---AEGRALELWDVDVKDLLETGRIVIERSALKEMIE 317 >gi|189095433|ref|YP_001936446.1| ribosomal protein L4 [Heterosigma akashiwo] gi|157694776|gb|ABV66052.1| 50S ribosomal protein L4 [Heterosigma akashiwo] gi|157778007|gb|ABV70193.1| 50S ribosomal protein L4 [Heterosigma akashiwo] Length = 231 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 23/224 (10%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + + + D + + K ++ R Q R G + +K RSEV G Sbjct: 8 KFPIIDGDSSKSESAKLKLRVQNEKGN-YLIHRAFVKQFIESRNGNANTKTRSEVRGGGR 66 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S ++GGG FGP L KK LAL+ L +K N Sbjct: 67 KPWQQKGTGRARAGSNRSPLWKGGGVTFGPKTKTYKIKLNKKEWRLALQTLLFNK--KNS 124 Query: 123 IMVIDNLV-----------SKECKTKYLVTRFRAL---------DLSNALIIDGCQLDRN 162 I VI + S KTK L+ ++ N ++I + N Sbjct: 125 IRVIKSFSETFERISKEQGSNPQKTKTLLNFLNQFVKIRNLNSNNIRNKILIVVPKKSLN 184 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++N+ NI+++ +N+ +L ++L +++ +E+ + Sbjct: 185 LISTSQNLKNIDIIAADNLNIKSLLDSKYILLCTESLKIIEETY 228 >gi|283794898|ref|YP_003359251.1| ribosomal protein L4 [Cryptomonas paramecium] gi|253981870|gb|ACT46787.1| ribosomal protein L4 [Cryptomonas paramecium] Length = 214 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 + + R+L Q+ +R + SK R+EV G K + QKGTGRAR S ++G Sbjct: 32 AEVSKFFFHRILTIQNKNQRCKTACSKTRAEVRGGGRKPWKQKGTGRARAGSSVSPLWKG 91 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL--VSKECKTKYLVTRF 143 GG FGP P + + K R LA+ L CS I+++ N + +TK + Sbjct: 92 GGVVFGPKPTVYNKKINFKERQLAIFTGLY--ACSYKIVIVRNFVSSIAQPRTKAFLGLL 149 Query: 144 RALD---LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 + D LS ++I + + RN+ I + + + + DI +++++ A+ Sbjct: 150 SSFDPSLLSKRILILVPKATETLYSSCRNVEKITIGSRKTLTLRDIFLADSILIAEEAL 208 >gi|11467718|ref|NP_050770.1| ribosomal protein L4 [Guillardia theta] gi|3914661|sp|O46895|RK4_GUITH RecName: Full=50S ribosomal protein L4, chloroplastic gi|3603043|gb|AAC35704.1| ribosomal protein L4 [Guillardia theta] Length = 223 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 4/179 (2%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L RVL Q R G + +K RSEV G K + QKGTG AR S + ++GGG FG Sbjct: 42 LLHRVLTNQLINNRSGNACTKTRSEVEGGGKKPWKQKGTGNARAGSSNSPLWKGGGVTFG 101 Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV----TRFRALD 147 P P + KK R LAL AL K + ++ +DNL KT+ LV Sbjct: 102 PKPRTFSNKTNKKERLLALTTALYLKSNNTKVINLDNLDFTNLKTRDLVIKCSNLIENYK 161 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ +NI N++L+ G+++ IL+ ++ + A+ +++ F Sbjct: 162 KDQKILFVAEPTASGLWRYVKNISNVDLIYTTGLDLKKILQAHHIIFTCKALNDVKEVF 220 >gi|213646336|ref|ZP_03376389.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 117 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ + Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116 Query: 122 D 122 Sbjct: 117 R 117 >gi|46576793|sp|Q85FW2|RK4_CYAME RecName: Full=50S ribosomal protein L4, chloroplastic Length = 200 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 + +L R LR R + +K R+E+ G K + QKGTGRAR S+ +RGGG A Sbjct: 21 KHLLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVA 80 Query: 90 FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149 FGP + L +K A + A CS I +++ + ++ ++ + L Sbjct: 81 FGPRGVAMECKLNRKESRKATKIAF--MACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 138 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L I + + + L+ RNI + L+ + I V +L ++ +S AI LE++ Sbjct: 139 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 194 >gi|315930641|gb|EFV09663.1| 50S ribosomal protein L4 (BL4) [Campylobacter jejuni subsp. jejuni 305] Length = 171 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 4/174 (2%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 M ++ V N E G + + + L ++ R + +KGRS+V+ Sbjct: 1 MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119 G K + QKG G AR S + + GG AFGP + KK + LAL AL+DK Sbjct: 59 GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173 + D+L + KTK + L + +ALI+ LD LA RN+ N Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANC 171 >gi|269115072|ref|YP_003302835.1| 50S ribosomal protein L4 [Mycoplasma hominis] gi|23306474|gb|AAM08936.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114] gi|268322697|emb|CAX37432.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114] Length = 322 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%) Query: 3 ELSVRNLDGEDK--GVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 ++SV+ + E ++ + +F L+ Q I + + +R+ K+K R EV+ Sbjct: 115 KISVKKDNEEHVEFSSENLPKSVFGLEKIYNQAIF-DAILSERGSRRLATHKTKTRGEVS 173 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDK 117 +G K + QK TG AR S F GGGK FGP + KK R AL A Sbjct: 174 GSGKKPWDQKHTGNARAGSLRSPIFVGGGKVFGPTTERNYNLKINKKTRRNALLSA-LTL 232 Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 + +++ + T+ L+ + +++ + + L+ARN+PN+ + Sbjct: 233 LAKDHAVLVKEYSLSKISTRELLIKLNEDKIASLNKVLLVSNNETVFLSARNLPNVTVTK 292 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207 V ++V +L LV+S ++ LE K Sbjct: 293 VTSLSVESLLAADVLVISSDDVKYLEGLVK 322 >gi|30468183|ref|NP_849070.1| ribosomal protein L4 [Cyanidioschyzon merolae strain 10D] gi|30409283|dbj|BAC76232.1| 50S ribosomal protein L4 [Cyanidioschyzon merolae strain 10D] Length = 181 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%) Query: 30 QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89 + +L R LR R + +K R+E+ G K + QKGTGRAR S+ +RGGG A Sbjct: 2 KHLLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVA 61 Query: 90 FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149 FGP + L +K A + A CS I +++ + ++ ++ + L Sbjct: 62 FGPRGVAMECKLNRKESRKATKIAF--MACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 119 Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L I + + + L+ RNI + L+ + I V +L ++ +S AI LE++ Sbjct: 120 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 175 >gi|163783904|ref|ZP_02178878.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] gi|159880825|gb|EDP74355.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1] Length = 126 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 1/125 (0%) Query: 83 FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142 GGG A GP P +ALPKKVR AL+ LS K +I+++++ KTK V Sbjct: 1 MVGGGVAHGPQPRDYYYALPKKVRKKALKGVLSIKLKDGEIIIVEDFSFDAPKTKNAVEV 60 Query: 143 FRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 + L L N ++I + D NF + RN+P + L+PV+G+N YDIL K+++ KSA E Sbjct: 61 LKNLGLENEKVLIVYNEKDDNFIKSFRNLPKVKLIPVEGLNTYDILNADKVLILKSAAEK 120 Query: 202 LEDRF 206 + +R Sbjct: 121 INERL 125 >gi|256370781|ref|YP_003108606.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri SMDSEM] gi|256009573|gb|ACU52933.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri SMDSEM] Length = 204 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 3/203 (1%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 ++L++ N +G + G + + D K I+ ++ +R G +KSK RSE+ + Sbjct: 1 MKLNILNKNGFETGRFLKIKNDSLKEKKN-HIIYLEIKRYFSAQRQGTNKSKERSEITGS 59 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 K+ QKG+G AR + FR GG+ FGP P L K + LA + + K Sbjct: 60 TKKIQRQKGSGNARKGNIKNPLFRSGGRIFGPKPKKFNFKLNKLFKVLAKKLLIYFKIKK 119 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 N + ++++ K+ KT + L+L L+I + D+NF +A+RN+ +N++ ++ Sbjct: 120 NKVKILEDFFLKKKKTFLIKKLITTLNLEKKKLLIIINKKDKNFFIASRNLKLLNVISIE 179 Query: 180 GINVYDILRCSKLVLSKSAIEAL 202 +N++ + L+ +S + L Sbjct: 180 ELNIFYLANSDYLIFFESVFKKL 202 >gi|328847985|gb|EGF97261.1| hypothetical protein MELLADRAFT_46232 [Melampsora larici-populina 98AG31] gi|328851234|gb|EGG00391.1| hypothetical protein MELLADRAFT_73186 [Melampsora larici-populina 98AG31] Length = 350 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 +S+ +F + I+ R + ++ R G + +K RSEVA +G K+ QKGTGRAR Sbjct: 76 LSKYVFGQPNRPDIIHRCVMFERSLMRSGSANTKTRSEVAMSGRKLRPQKGTGRARIGDA 135 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK--T 136 S R GG AFGP P + +KV L LR LS ++ +++++D + + + Sbjct: 136 SSPTLRKGGVAFGPKPKDWSQGIQRKVWELGLRTVLSQRWRDGNLILVDRFSMNDTEYGS 195 Query: 137 KYLVTRFRALDLSNALIIDGCQ 158 + L S+A++I G Sbjct: 196 EQLAELITQKGWSDAMLIAGGD 217 >gi|213408030|ref|XP_002174786.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275] gi|212002833|gb|EEB08493.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275] Length = 245 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 13/208 (6%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E G + + ++ IL + + +++ R R G + +K RSE+ +G K+ QKGTG Sbjct: 14 EPMGFLHIPRPFLTEPLRRDILQKAVVFEANRDRAGTANTKSRSEINCSGKKLRPQKGTG 73 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LV 130 RAR S RGG A GP P +P K+ S A+R ALS++F N+++V+D+ L Sbjct: 74 RARLGDASSPMLRGGAVAHGPKPRDFTTKMPTKIFSKAMRVALSERFRQNELLVLDSPLH 133 Query: 131 SKECKTKYLVTRFRALDL-----SNALIIDGCQLDRNFQLAARNIP-------NINLLPV 178 +++ +K L + DL I+D + R I + LP Sbjct: 134 TEQLTSKLLNAFVKLHDLGAPYGRTLFILDDLSYSTSAATNKRFIEATTSLGRHCEFLPA 193 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + L+ KL + A L + Sbjct: 194 SQLQIRHALKFGKLAIEHKAFSTLYQLY 221 >gi|226295376|gb|EEH50796.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb18] Length = 272 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 22/178 (12%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ IL R + ++ + R G + +K R +V + K+ QKGTGRAR K RG Sbjct: 101 LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 160 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRH-ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GG A GP P LPKK+ LA R L D F N Sbjct: 161 GGVAHGPHPRDFSTKLPKKIYDLAWRTRWLEDVFEKNQW--------------------- 199 Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L+I + +R F + +L + ++V D+L ++L++ K A++ + Sbjct: 200 GKSFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQALDRM 257 >gi|289619254|emb|CBI54221.1| unnamed protein product [Sordaria macrospora] Length = 349 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 32/228 (14%) Query: 4 LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V + + E + + S S L ++ IL + ++ R+G + SK R EV + Sbjct: 91 VTVYSFPELEPRSLESYSARHLHLPLRRDILHLAVIYEGDSTRLGMASSKTRYEVHGSHK 150 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 KM QKGTG AR +K +GGGK+FGP P L KKV LA R ALS ++ + Sbjct: 151 KMIAQKGTGHARRGTKQSPLQKGGGKSFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGE 210 Query: 123 IMVIDN-LVSKECKT--------------------KYLVTRFRALDLSN----ALIIDGC 157 ++V ++ L K++ L+ I G Sbjct: 211 LIVTEDGLDLPLPDDFLWLAGGGKLSRELEDAYVRKWVREFMTGLNWGKEAGRTTFITGD 270 Query: 158 QLDR---NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + F+LA L + ++V D+L ++V+ +SA++ + Sbjct: 271 KRPNLFTGFELAG---AEGRALELWDVDVKDLLETGRIVIERSALKEM 315 >gi|145509084|ref|XP_001440486.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407703|emb|CAK73089.1| unnamed protein product [Paramecium tetraurelia] Length = 318 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 3/205 (1%) Query: 6 VRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +R D + G I++ ++IF ++ ++ R++R+ + + + A +G+K Sbjct: 38 IRFHDAQPTGQSIALDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKN 97 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QK TGRAR + G KA G LP+KVR A + L+ Sbjct: 98 HPQKKTGRARQGHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFT 157 Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 VID E KTK+LV + + LI+ D F A+RN+ N+ V+ N Sbjct: 158 VIDTEKLNEGKTKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLENLETCTVKEFN 217 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 + IL+ ++++K AI L + K Sbjct: 218 IIKILKFKSILITKEAIIQLTESLK 242 >gi|84515209|ref|ZP_01002572.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53] gi|84511368|gb|EAQ07822.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53] Length = 109 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 64/109 (58%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ NL+G G + +++ IF LKP++ IL RV+RWQ + G GRSEV+Y+ Sbjct: 1 MKADAINLEGAKAGSVELNDAIFGLKPRKDILHRVVRWQRNKAMAGTHDVLGRSEVSYST 60 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLAL 110 K+Y QKGTG ARH SK FR GG GP P H L KK R+L L Sbjct: 61 KKIYRQKGTGGARHGSKGAPIFRHGGTYKGPTPRSHAHELTKKFRALGL 109 >gi|58262906|ref|XP_568863.1| ribosomal protein L4 [Cryptococcus neoformans var. neoformans JEC21] gi|57223513|gb|AAW41556.1| ribosomal protein L4, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 406 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 63/249 (25%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I++ D+FA ++ IL R + W + R G +K RS VAY+G K+ QKGTG+AR Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVR----SLALRHALSD---------------- 116 S RGG P ALP+KVR +AL L Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNLNEAGWKG 245 Query: 117 -----KFCSNDIMV--IDNLVSKECKTK---------YLVTRFRALDLS----------- 149 + ++ + +++ + KT V + L+ + Sbjct: 246 TNEAKRALADALTFPEVEDSEMQATKTNTEPVAQDAVQAVEKVNELEGTVPEATSSAIKP 305 Query: 150 ------------NALIIDGC--QLDR--NFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 + L + D +F RNIP + +L + + VYDIL+ LV Sbjct: 306 GFIPRFGPAKDLSVLFLYSPFKPSDEIADFVRVTRNIPGVEVLSTEEVQVYDILKYRWLV 365 Query: 194 LSKSAIEAL 202 + A++ Sbjct: 366 MEGEAVDWF 374 >gi|134108222|ref|XP_777062.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259747|gb|EAL22415.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var. neoformans B-3501A] Length = 406 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 63/249 (25%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I++ D+FA ++ IL R + W + R G +K RS VAY+G K+ QKGTG+AR Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVR----SLALRHALSD---------------- 116 S RGG P ALP+KVR +AL L Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNLNEAGWKG 245 Query: 117 -----KFCSNDIMV--IDNLVSKECKTK---------YLVTRFRALDLS----------- 149 + ++ + +++ + KT V + L+ + Sbjct: 246 TNEAKRALADALTFPEVEDSEMQATKTNTEPVAQDAVQAVEKVNELEGTVPEATSSAIKP 305 Query: 150 ------------NALIIDGC--QLDR--NFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 + L + D +F RNIP + +L + + VYDIL+ LV Sbjct: 306 GFIPRFGPAKDLSVLFLYSPFKPSDEIADFVRVTRNIPGVEVLSTEEVQVYDILKYRWLV 365 Query: 194 LSKSAIEAL 202 + A++ Sbjct: 366 MEGEAVDWF 374 >gi|308496497|ref|XP_003110436.1| hypothetical protein CRE_05535 [Caenorhabditis remanei] gi|308243777|gb|EFO87729.1| hypothetical protein CRE_05535 [Caenorhabditis remanei] Length = 243 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+ ++ E G++ + DIF P+ IL R L WQS + + +K ++E+ G K Sbjct: 97 SLETIEDEKLGLVDLHPDIFRATPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 156 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123 + QK TGRA S QF GG A G P + LP VR L AL+ K +D+ Sbjct: 157 WPQKKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHAQDDL 216 Query: 124 MVID---NLVSKECK 135 ++D NL +++ K Sbjct: 217 HIVDNIQNLQNEDPK 231 >gi|256071067|ref|XP_002571863.1| 50S ribosomal protein L4 [Schistosoma mansoni] gi|238657011|emb|CAZ28093.1| 50S ribosomal protein L4, putative [Schistosoma mansoni] Length = 409 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 58/249 (23%) Query: 15 GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGRA 73 G+I + DIFA+ P+ ++ + L WQ+ + I R+E++Y K + QKGTG+A Sbjct: 101 GMIDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELSYGTRKKPWPQKGTGKA 160 Query: 74 RHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 RH ++ + GG+ GP P + L R L LS K +V++ Sbjct: 161 RHGNRRTHIWLTGGQCKGPRGPESFYYLLSYGERLAGLLSMLSIKHAQVIFVVVEKNNEL 220 Query: 133 ECKTKYLVTRFRALDLSNALI------------------IDGCQLDRNFQLAARNIP--- 171 + R S + ID + D N + N+ Sbjct: 221 SAIYIRQLADLRCWGPSILFVDAHSPASQLAVPCPGSENIDNNETD-NMNFSYDNLAISL 279 Query: 172 -------NIN---------------------------LLPVQGINVYDILRCSKLVLSKS 197 ++ L+PV +NV+ ++ LV+S Sbjct: 280 ACGSYENHVKSEISPESSAFKLDSIAPRATHPGRGLTLMPVHSLNVWSMVHHDTLVISLK 339 Query: 198 AIEALEDRF 206 A+E LE+R Sbjct: 340 ALEMLEERL 348 >gi|331215175|ref|XP_003320268.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309299258|gb|EFP75849.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 339 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 +S +F + I+ R + ++ R G + +K RSEVA +G K+ QKG+GRAR Sbjct: 60 LSSFVFGQPFRSDIIHRCVNFERSLMRSGSANTKTRSEVAMSGRKLRPQKGSGRARLGDA 119 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKT 136 S R GG AFGP P + +KV L LR LS ++ ++V+D E + Sbjct: 120 SSPTLRKGGAAFGPKPKDWAQGIQRKVWELGLRTILSQRWREGRLIVVDKFEMDGQEEAS 179 Query: 137 KYLVTRFRALDLSNALIIDG 156 + L S+A++I G Sbjct: 180 EQLARLMNQRAWSSAVMIAG 199 >gi|325973272|ref|YP_004250336.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois] gi|325989707|ref|YP_004249406.1| 50S ribosomal protein L4 [Mycoplasma suis KI3806] gi|323574792|emb|CBZ40452.1| 50S ribosomal protein L4 [Mycoplasma suis] gi|323651874|gb|ADX97956.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois] Length = 223 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 9/213 (4%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQ---QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 E+ + LDGE + I S+ I K + + + KR+ +K + EV+ Sbjct: 6 EIKIYTLDGEVESSIKFSDFIPDWKSDFYYSDAIFQTTVSEQQSKRLARPHTKTKGEVSG 65 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKF 118 G K Y QK TGRAR S+ QF GGG AFGP + K++R+LA+R + + Sbjct: 66 GGKKPYRQKHTGRARQGSRRNPQFVGGGVAFGPRKEVNHYKKVNKRIRALAIRSSWTLAL 125 Query: 119 CSNDIMVIDN---LVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNI 173 N + I + +TK + L + + L + L ARN+PN+ Sbjct: 126 NENRVFGISSKKLENFPANRTKIFYSFLGKLGFQGEKRVYLIVKSLSEDIVLGARNLPNL 185 Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 ++ V I ++ +L +++LS E L+ + Sbjct: 186 KVVKVNSITIFSLLNARRIILSNEGFEWLKTNY 218 >gi|145535756|ref|XP_001453611.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421333|emb|CAK86214.1| unnamed protein product [Paramecium tetraurelia] Length = 318 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 3/205 (1%) Query: 6 VRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 +R D + G I++ ++IF ++ ++ R++R+ + + + A +G+K Sbjct: 38 IRFHDAQPSGQSITLDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKN 97 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 + QK TGRAR + G KA G LP+KVR A + L+ Sbjct: 98 HPQKKTGRARQGHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFT 157 Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 VID E KTK+LV + + LI+ D F A+RN+ ++ V+ N Sbjct: 158 VIDTEKLNEGKTKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLDSLETCTVKEFN 217 Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207 + IL+ ++++K AI L + K Sbjct: 218 IIKILKFKSILITKEAILQLTESLK 242 >gi|219117581|ref|XP_002179583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408636|gb|EEC48569.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 184 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 88/179 (49%), Gaps = 20/179 (11%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIG-VHALPKKVR 106 +K+K SEV+ +G K+ QKGTG AR FRGG KA GP L KKVR Sbjct: 4 AKTKTISEVSGSGRKIRNQKGTGMARAGHSRPPHFRGGAKAHGPKNVTDYGNTKLNKKVR 63 Query: 107 SLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTRFRALDLS-----NALIIDGCQLD 160 LAL HALS K +++++++L KTK L D+ ALI+D + Sbjct: 64 KLALVHALSQKLLEGNLIILNSLKELPSHKTKELTRFLEPWDIGGKDGATALILDAYISE 123 Query: 161 R------------NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 N +A+ NI I + VYDIL+ KLVL+ +A+E LEDR + Sbjct: 124 EEGQPQSYKGVPMNLWVASSNIYRIKVGNHLAACVYDILKHEKLVLTLAALEKLEDRLR 182 >gi|302308292|ref|NP_985172.2| AER316Cp [Ashbya gossypii ATCC 10895] gi|299789385|gb|AAS52996.2| AER316Cp [Ashbya gossypii ATCC 10895] Length = 269 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 21/212 (9%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + V + + ++ IL R + +++ KR+G S RSE Y+ K+ QKGTG Sbjct: 52 EPVSFMPVPMSVLGVPLRRDILWRAVVYENDNKRVGSSNPPSRSENGYSRRKLLPQKGTG 111 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSD-------------- 116 RAR + GGG+A P LP+K+ S A ALS Sbjct: 112 RARVGDANSPTRHGGGRAHARSAPNDYTTKLPRKIYSQAFSIALSHQYRQGNMYAIGLEE 171 Query: 117 --KFCSNDIMVIDNLVSKECKTKYLV--TRFRALDLSNA--LIIDGCQLDRNFQLAARNI 170 K D+ V+D L S+ V T L N L I Sbjct: 172 SGKLSEGDLPVLDLLPSETNPHPDAVFETFLNEFGLQNKRLLFIIDEPRPSLMAFTESFK 231 Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++++ + ++V DILR ++ + A++ L Sbjct: 232 DKVDIVQKEFVDVNDILRAHRIFIESEALKYL 263 >gi|320533935|ref|ZP_08034505.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133855|gb|EFW26233.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 141 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 71 GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 GRAR S QF GGG GP P PKK+++ ALR ALSD+ + + VI V Sbjct: 1 GRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFV 60 Query: 131 SKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + TK + R L AL+I Q D +L+ RN P ++L +N YD+L+ Sbjct: 61 TTTVPSTKNALVALRNLTDRKALVIVDRQ-DDLSRLSLRNAPEAHVLWADQLNTYDVLKS 119 Query: 190 SKLVLSKSAIEAL 202 +V + S ++A Sbjct: 120 DDVVFTASGLDAF 132 >gi|321251817|ref|XP_003192188.1| ribosomal protein L4 [Cryptococcus gattii WM276] gi|317458656|gb|ADV20401.1| Ribosomal protein L4, putative [Cryptococcus gattii WM276] Length = 407 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 I++ D+FA ++ IL R + W + R G +K RS VAY+G K+ QKGTG+AR Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185 Query: 77 SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136 S RGG P ALP+KVR L++R ALS K + + V+ NL E Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRDLSMRIALSSKLQAGLLRVVPNLN--EAGW 243 Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNF 163 K RAL ++ L + Sbjct: 244 KGTNEARRAL--ADGLAFPEAEASEKV 268 >gi|320581244|gb|EFW95465.1| 60S ribosomal protein YmL6, mitochondrial precursor [Pichia angusta DL-1] Length = 262 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 20/208 (9%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 V ++ +L + + KR+G S GRS+ ++ K+ QKG+GRAR Sbjct: 50 VHNAFLNAPIRRDVLWLAVVMELDNKRVGASNPPGRSDHKFSRHKLLPQKGSGRARVGDA 109 Query: 79 SVSQ-FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI----------- 126 + FRG P LP+KV +A R ALS + + + V+ Sbjct: 110 NSPIRFRGAYALARTAPNDFSTDLPQKVYDMAYRIALSSAYKAGKLFVVGEHEAAGSELL 169 Query: 127 --DNLVSK--ECKTKYLVTRFRALDLS--NALIIDGCQLDR-NFQLA-ARNIPNINLLPV 178 D+ + + L T S N L I G N A ++ + +L Sbjct: 170 PGDSFNLELTHSHPRALDTFVAKHGFSKLNVLFIPGEYDPEANLAKAVSKYSDKVRILRK 229 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206 + + V D+L+ +LV+SK A+ ++ Sbjct: 230 EDVEVRDLLKADRLVVSKDALVYFAAKY 257 >gi|148693201|gb|EDL25148.1| mitochondrial ribosomal protein L4, isoform CRA_b [Mus musculus] Length = 194 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 48/82 (58%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ I+ +V WQ +RI + +K R+EV+ G K Sbjct: 63 SLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKP 122 Query: 65 YVQKGTGRARHSSKSVSQFRGG 86 + QKG+GRARH S +RGG Sbjct: 123 WQQKGSGRARHGSIRSPLWRGG 144 >gi|146422131|ref|XP_001487007.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC 6260] gi|146388128|gb|EDK36286.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 88/199 (44%), Gaps = 4/199 (2%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E K + + F ++ IL + +++ R+G +S+ Y+ K++ QKGTG Sbjct: 37 EPKTFVPLPASFFDAPFRRDILWSAVVYEADGARVGSGYVPTKSDKLYSNRKLHPQKGTG 96 Query: 72 RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-L 129 RAR + KA G P LP+K+ + A++ A+SD++ +I ++++ + Sbjct: 97 RARVGDANSPIRDNEIKAHGIKAPHDWSTDLPRKIYNKAVKTAISDQYRKGNIFIVEDGV 156 Query: 130 VSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDIL 187 K A L L+ + N + + +++ + + V D+L Sbjct: 157 DFKYAHQDATKQFVEAHSLDKLHLLFITNEQRTNLLESTEYLGTKGDVIVKEAVQVRDLL 216 Query: 188 RCSKLVLSKSAIEALEDRF 206 + +++ + A++ + ++ Sbjct: 217 KANRIYIEADALKWMIGKY 235 >gi|269866679|ref|XP_002652355.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220062675|gb|EED41702.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 160 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 1/148 (0%) Query: 41 SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA 100 R + K R+ V G K + QKGTGRAR S +RGGG+AF Sbjct: 1 MAGMRSANAVQKNRAAVRGGGRKPWKQKGTGRARAGSIRSPIWRGGGRAFPGGNENYTQK 60 Query: 101 LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160 + KK+ + A+R L++ + +I E +++ N L++ G ++ Sbjct: 61 VNKKMWAGAMRTVLAELLRQGRLQIIQQEDFGEPRSRLGRDWLSRAGGDNVLLVMG-EVP 119 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILR 188 N L RN P + + + + D+L Sbjct: 120 LNLFLGLRNFPRVGIAGWKDVGPADLLN 147 >gi|209736972|gb|ACI69355.1| Mitochondrial 39S ribosomal protein L4 [Salmo salar] Length = 132 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRS 107 + +K RSEV G K + QKG+G+ARH S +RGGG + GP P + LP KVR Sbjct: 27 AHTKVRSEVRGGGKKPWRQKGSGKARHGSIRSPIWRGGGVSHGPRGPTSFYYMLPMKVRV 86 Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI 153 ++ ALS K + + V+D L +YL+ R +L Sbjct: 87 QGIKIALSSKLAQDYLHVVDTLNIPTPDPQYLMDLIRYRHWGGSLF 132 >gi|254582070|ref|XP_002497020.1| ZYRO0D13552p [Zygosaccharomyces rouxii] gi|238939912|emb|CAR28087.1| ZYRO0D13552p [Zygosaccharomyces rouxii] Length = 258 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 23/207 (11%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 V ++ A ++ IL R + +++ KR+G S GRS+ Y+ K++ QKGTGRAR Sbjct: 47 VPTNVLAAPLRRDILWRAVVYENDNKRVGSSNPPGRSDNGYSRRKLFPQKGTGRARAGDA 106 Query: 79 SVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---------DN 128 + GG+A P LP K+ S A R+ALS ++ + VI + Sbjct: 107 NSPIRSTGGRALPRKAPNDFSTELPSKLYSAAFRNALSYQYQQGKLFVIGGQNLLQDTNE 166 Query: 129 LVSKE-------CKTKYLVTRFR------ALDLSNALIIDGCQLDRNFQLAARNIPNINL 175 L E ++ F+ L L I + Q N+++ Sbjct: 167 LDLNELEILPRDPESNDGDLIFKKFLKEYNLQKKKLLFIVSEPRESLLQYTEEFKENVDI 226 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202 + + I+V DIL+ ++ + A+E L Sbjct: 227 VQQEFIDVNDILKAHRIFIELEALEYL 253 >gi|77407531|ref|ZP_00784358.1| ribosomal protein L4 [Streptococcus agalactiae H36B] gi|77173859|gb|EAO76901.1| ribosomal protein L4 [Streptococcus agalactiae H36B] Length = 136 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 65/125 (52%) Query: 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141 Q+RGGG FGP P + LP+KVR LAL+ S K + + ++ L KT + Sbjct: 11 QWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEXLSFAAPKTAEFAS 70 Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201 AL + + +++ + + L+ARN+PN+ + +V DI+ KL+++K AI Sbjct: 71 VLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAIST 130 Query: 202 LEDRF 206 +E Sbjct: 131 IEGVL 135 >gi|294944163|ref|XP_002784118.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897152|gb|EER15914.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 497 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 8/198 (4%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKG 69 E+ G I V IFA ++ IL W G + + E + K K Sbjct: 117 EEIGSIIVPNSIFAEPIRKDILYFTYWWHRGCM-AGYQQDMQLFKWEWPGSNKKARSHKN 175 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129 G++R + G + P K+ +L+ LS KF +I V+D+ Sbjct: 176 IGKSRMGRRKAPGKYDGVFSIPQRPREWRQGELKRRVWKSLKMMLSAKFAQGEITVVDSF 235 Query: 130 VSKECKTKYLVTRFRAL---DLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVY 184 KT+++ R L ++AL+I ++ NF+ +I + V+G++ Y Sbjct: 236 NVSTHKTRHVAAHLRRLLGRHCNSALLIHVGTSDVNDNFRWGTAHIAQVRREDVEGVSTY 295 Query: 185 DILRCSKLVLSKSAIEAL 202 ++L+ ++V+++ A+ L Sbjct: 296 NLLKYRQIVITEQALHKL 313 >gi|300120113|emb|CBK19667.2| unnamed protein product [Blastocystis hominis] Length = 162 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 11 GEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 GE +++++ +F + ++ IL RV+ WQ ++R G K SEV+ + K + QKG Sbjct: 4 GEQTSDLVTLNNRVFGMPLREDILQRVVVWQLAKRRQGTHCVKTLSEVSGSNRKPFPQKG 63 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK---VRSLALRHALSDKF 118 TGRAR K Q RGG K GP P + LP K + + R +L+ Sbjct: 64 TGRARQGQKRAPQMRGGYKPMGPRPRDYDYPLPMKGNSIFVVVKRSSLAGLA 115 >gi|324556508|gb|ADY49811.1| 50S ribosomal protein L4 [Ascaris suum] Length = 96 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 49/94 (52%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 + I++++D+FA+ P + L + Q R G K RS V+ G K + QKGTG Sbjct: 3 KKVDSITLNDDVFAITPNEQALFDAVMLQRANVRQGTHSVKNRSAVSGGGRKPWRQKGTG 62 Query: 72 RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKV 105 RAR + Q+RGGG FGP P + KKV Sbjct: 63 RARQGTIRAPQWRGGGVVFGPTPRKYTLKMNKKV 96 >gi|226329481|ref|ZP_03804999.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198] gi|225202667|gb|EEG85021.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198] Length = 105 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ G ++VSE F + ++ +V+ + R G K R+EV+ +G Sbjct: 1 MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 K + QKGTGRAR S +R GG +F P + KK Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKK 99 >gi|50303315|ref|XP_451599.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640731|emb|CAH01992.1| KLLA0B01540p [Kluyveromyces lactis] Length = 262 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 25/215 (11%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E V +F ++ +L R + +++ KR+G S GRS+V Y+ K+ QKG+G Sbjct: 43 EPLTFAPVPTSVFDAPLRRDLLWRAVVYENDSKRVGSSNPPGRSDVGYSRRKILPQKGSG 102 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126 AR + GG+A P ALPKKV SLA +ALS ++ + ++ VI Sbjct: 103 MARAGDANSPIRHNGGRALARTAPNDYTTALPKKVYSLAFNNALSHQYRNGNVFVIGSGD 162 Query: 127 -------------------DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 + + + + + L L + F Sbjct: 163 GISETSQADLNELEILPIGEGSEDGDIVFEKFLKHYE-LQNKKLLFVINEPRPGLFSFTE 221 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 R +N++ + ++V D+L+ ++ + A+E L Sbjct: 222 RFQDKVNIVQKEFVDVNDLLKAHRIFIELEALEYL 256 >gi|291413252|ref|XP_002722892.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Oryctolagus cuniculus] Length = 162 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 48/82 (58%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 S+R + E G+ + D+FA P+ +L +V WQ KRI +K+K R+EV G K Sbjct: 68 SLRGYEQERVGLAELHPDVFATAPRLDVLHQVAVWQKNFKRISYAKTKTRAEVRGGGRKP 127 Query: 65 YVQKGTGRARHSSKSVSQFRGG 86 + QKG+GRARH S +RGG Sbjct: 128 WQQKGSGRARHGSIRSPIWRGG 149 >gi|226466798|emb|CAX69534.1| putative mitochondrial ribosomal protein L4 isoform a [Schistosoma japonicum] Length = 450 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGR 72 G++ + DIFA+ P+ ++ + L WQ+ + I R+E+ Y K + QK TG+ Sbjct: 96 VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELPYGTRKKPWPQKKTGK 155 Query: 73 ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131 ARH ++ + GG+ GP P + LP R L L+ K ND+ ++D+ + Sbjct: 156 ARHGNRRTHIWLTGGQCKGPRGPESFFYVLPYNERLAGLLSMLTIKHAQNDLHIVDDFML 215 Query: 132 KECKTKYLVTRF 143 E F Sbjct: 216 SETLEGDAKNIF 227 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + L+PV +NV+ ++ LV+S A+E LE + Sbjct: 355 GLTLMPVHSLNVWSMVHHDTLVISLKALEILETKL 389 >gi|323164884|gb|EFZ50675.1| 50S ribosomal protein L4 [Shigella sonnei 53G] Length = 104 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104 K + QKGTGRAR S +R GG F P L ++ Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKLTRR 99 >gi|260942525|ref|XP_002615561.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720] gi|238850851|gb|EEQ40315.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720] Length = 244 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 13/209 (6%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + ++ L + +++ + R+G + + ++ K++ QKGTG Sbjct: 34 EPHAYVPYPTNFLNQPLRRDFLWSAVVYEADKARVGSGYVPTKGDKWFSNRKLHPQKGTG 93 Query: 72 RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMV----- 125 RAR + G KA G P LP K+ S A + A SD++ + + V Sbjct: 94 RARVGDANSPIRDNGLKAHGIKAPHDWSTRLPSKIYSRAFQTAFSDQYRNGKLFVIGGAQ 153 Query: 126 -------IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + + + L+ + L I Q D + A ++L Sbjct: 154 ANEGESNVVDFKYEYPDQMRQFVEAHDLEHLHLLFITDGQRDNLLKATADMGKKCDVLVK 213 Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207 + + V D+L+ +++ + +SA+ +++ Sbjct: 214 EAVEVRDLLKANRIFIEQSALNWFVSQYE 242 >gi|50425441|ref|XP_461314.1| DEHA2F22330p [Debaryomyces hansenii CBS767] gi|49656983|emb|CAG89715.1| DEHA2F22330p [Debaryomyces hansenii] Length = 255 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 17/211 (8%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + + F ++ L + +++ R R+G + + Y+ K++ QKGTG Sbjct: 41 EPHSFVPLPTQFFDAPLRRDFLWSAVVYEADRARVGSGYVITKGDKLYSNRKLHPQKGTG 100 Query: 72 RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIM------ 124 RAR + KA G P LP KV S A + ALSD++ + + Sbjct: 101 RARTGDANSPIRDNEVKAHGVKAPHDWSTRLPSKVYSKAFQTALSDQYRNGKVFIIGGDK 160 Query: 125 --------VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNI-PNINL 175 V+ + + LD + L I Q D N + + ++ Sbjct: 161 SATKASDDVVADFKYDHPEATRQFVEAHDLDRLSLLFITDAQRD-NLINSTEYVGKKADV 219 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 L + + V DIL+ +++ + A++ ++ Sbjct: 220 LIKEAVEVRDILKANRIYIEAPALQWFIGKY 250 >gi|218659827|ref|ZP_03515757.1| 50S ribosomal protein L4 [Rhizobium etli IE4771] Length = 117 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 71/120 (59%), Positives = 90/120 (75%), Gaps = 3/120 (2%) Query: 88 KAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD 147 A P P PKKVR+L +R ALS K ++D++VIDNLV+ E KTK L + F L Sbjct: 1 MAGRPQPRA---RPPKKVRALGIRDALSAKIKADDVIVIDNLVAAEAKTKALASAFETLG 57 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 L+NAL I G +LD NF+LAA+NIPNI++LP+QGINVYDI+R KLVLSK+A+EALE+RFK Sbjct: 58 LTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERFK 117 >gi|255717917|ref|XP_002555239.1| KLTH0G04642p [Lachancea thermotolerans] gi|238936623|emb|CAR24802.1| KLTH0G04642p [Lachancea thermotolerans] Length = 254 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 23/214 (10%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + V + ++ IL + + +++ KR+G S GRSE Y+ K+ QKG+G Sbjct: 35 EPLTFVPVPASVLDAPLRRDILWKAVVYENDNKRVGSSNPPGRSENGYSRRKLLPQKGSG 94 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126 +AR + G +A P LP+KV S A +ALS ++ ++ +I Sbjct: 95 KARAGDANSPTRHNGARALARSAPNDYTTKLPQKVYSQAFINALSYQYRRGNLFIIGGTH 154 Query: 127 ---DNLVSKECKTKYLVTRFRA---------------LDLSNALIIDGCQLDRNFQLAAR 168 + + + L T L N L + F+ + Sbjct: 155 SLCETHDLDVNELEVLPTSLENDDGELVFEKFLQEHELQKQNLLFVINAPRGGLFRYSEP 214 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 N+N++ + ++V DIL+ ++ + A+E L Sbjct: 215 FKENVNIVQKEFVDVNDILKARRIFIELEALEYL 248 >gi|156844943|ref|XP_001645532.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM 70294] gi|156116196|gb|EDO17674.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM 70294] Length = 280 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 38/226 (16%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + VS ++ IL + + +++ R+R+G S GRSE Y+ K++ QKGTG Sbjct: 51 EPVSFVPVSSTHLNAPIRRDILWQAVVYENDRRRVGASNPPGRSENGYSRRKLHKQKGTG 110 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126 RAR + GG+A P V LP K+ S A +ALS ++ S +++VI Sbjct: 111 RARVGDANSPTRHNGGQALARTAPNNYVTDLPAKLYSKAFINALSHQYQSGNLIVIGNKD 170 Query: 127 ------DNLVSKECKTKYLVTRF---------------------RALDLSNALIIDG-CQ 158 + ++ L L L I + Sbjct: 171 YRSSTLEEVLEDSSCPTDLNQIELLPSTETGEGADLVFDKFLNEHNLGKKRLLFITSFPK 230 Query: 159 LD--RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 D N Q + ++++P + I V DIL+ K+ + A+ L Sbjct: 231 FDFMENTQKHS---EKVDVIPKELIEVNDILKAQKIFIDLEALSYL 273 >gi|190408215|gb|EDV11480.1| 60S ribosomal protein YmL6, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|259148550|emb|CAY81795.1| EC1118_1M3_1255p [Saccharomyces cerevisiae EC1118] Length = 286 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 34/231 (14%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++VR+ E + V A ++ IL R + +++ +R+G S GRSE ++ Sbjct: 44 VTVRSFPSLEPLTFVPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRR 103 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+GRAR + GG+A P LP KV S+A +ALS ++ S Sbjct: 104 KLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSG 163 Query: 122 DIMVI--DNLVSKECKTKYLVTRFRALDLS-------------------------NALII 154 + VI + + + + R ++ + L+ Sbjct: 164 KLFVIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLF 223 Query: 155 DGCQLDRNFQLAARNIP---NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + ++ P ++++ + + V DILR + + A+E L Sbjct: 224 ITDKTREGLIKSSD--PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 272 >gi|256270863|gb|EEU06001.1| Yml6p [Saccharomyces cerevisiae JAY291] Length = 287 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 34/231 (14%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++VR+ E + V A ++ IL R + +++ +R+G S GRSE ++ Sbjct: 45 VTVRSFPSLEPLTFVPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRR 104 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+GRAR + GG+A P LP KV S+A +ALS ++ S Sbjct: 105 KLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSG 164 Query: 122 DIMVI--DNLVSKECKTKYLVTRFRALDLS-------------------------NALII 154 + VI + + + + R ++ + L+ Sbjct: 165 KLFVIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLF 224 Query: 155 DGCQLDRNFQLAARNIP---NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + ++ P ++++ + + V DILR + + A+E L Sbjct: 225 ITDKTREGLIKSSD--PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 273 >gi|6323616|ref|NP_013687.1| Yml6p [Saccharomyces cerevisiae S288c] gi|1710566|sp|P51998|RL4P_YEAST RecName: Full=54S ribosomal protein YmL6, mitochondrial; Flags: Precursor gi|575694|emb|CAA86630.1| unnamed protein product [Saccharomyces cerevisiae] gi|151946136|gb|EDN64367.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|285813978|tpg|DAA09873.1| TPA: Yml6p [Saccharomyces cerevisiae S288c] Length = 286 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 34/231 (14%) Query: 4 LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++VR+ E + V A ++ IL R + +++ +R+G S GRSE ++ Sbjct: 44 VTVRSFPSLEPLTFVPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRR 103 Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSN 121 K+ QKG+GRAR + GG+A P LP KV S+A +ALS ++ S Sbjct: 104 KLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSG 163 Query: 122 DIMVI--DNLVSKECKTKYLVTRFRALDLS-------------------------NALII 154 + VI + + + + R ++ + L+ Sbjct: 164 KLFVIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLF 223 Query: 155 DGCQLDRNFQLAARNIP---NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + ++ P ++++ + + V DILR + + A+E L Sbjct: 224 ITDKTREGLIKSSD--PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 272 >gi|50288489|ref|XP_446674.1| hypothetical protein [Candida glabrata CBS 138] gi|49525982|emb|CAG59601.1| unnamed protein product [Candida glabrata] Length = 285 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 35/230 (15%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E I VS ++ +L ++ IL + + +++ ++R+G S GRS+ ++ K+ QKG+G Sbjct: 50 EPNSFIPVSANVLSLPLRRDILWQAVVYENDKRRVGASNPPGRSDKGFSRKKLLPQKGSG 109 Query: 72 RARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV----- 125 +AR + GG+A P L KKV S A ALS ++ ++ V Sbjct: 110 KARVGDANSPIRHNGGRALARTAPNDYSTELNKKVYSTAFFTALSHQYKLGNLFVIGKEG 169 Query: 126 ------IDNLVSK---------------------ECKTKYLVTRFRALDL-SNALIIDGC 157 ++ L E Y +L L+ Sbjct: 170 EIAKNDVEILDIDLGQKPVPSDKIKPNKMAELENEYCEMYFKKFLAENNLFKQRLLFVTN 229 Query: 158 QLDRNFQLAARNIP-NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + A+ I+++ + + V DILR K+ + A++ + ++ Sbjct: 230 EPREKLLHASDKYKDKIDIIQKEHLEVNDILRAGKIYIELEALKGISAKY 279 >gi|21702612|gb|AAM76008.1|AF481103_18 ribosomal protein L4 [Candidatus Tremblaya princeps] Length = 198 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 3/172 (1%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L +VL R CS + R EV+++ K + QKG GRAR S +RGGG+AF Sbjct: 22 LLRQVLNAYHASLRPSCSTQRSRGEVSHSTRKPWRQKGLGRARAGMTSSPLWRGGGRAFP 81 Query: 92 PVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150 + + K++ L+L + + ++D L KT+ L R + S Sbjct: 82 SRTAASRLVRINKRMARLSLHVQIVRAARQGRLAIVDALRIAPSKTREL--RCASAQPST 139 Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +++ +L N AARN+ ++++ +GI+ S++V+++ A E + Sbjct: 140 MVVVGKSELCYNAYRAARNVSGLSIVAQRGISPRAFHLSSRIVMTRKAAEDI 191 >gi|126136939|ref|XP_001384993.1| hypothetical protein PICST_32454 [Scheffersomyces stipitis CBS 6054] gi|126092215|gb|ABN66964.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 245 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 16/205 (7%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76 + + ++ L + +++ + R+G + + ++ K+ QKG+G+AR Sbjct: 39 VPLPASFMDAPTRRDFLWSAVVYEADKARVGSGYVPTKGDKLFSNKKLRPQKGSGKARVG 98 Query: 77 SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-------- 127 + G KA G P L KV A + A S+++ + + VI Sbjct: 99 DANSPTRDNGIKAHGIKAPHDWSTGLNSKVYHKAFQAAFSEQYKNGKVFVIGGDQVASEY 158 Query: 128 -----NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGI 181 + + + + L N L I Q D N + I ++L + + Sbjct: 159 DTTELDFKYEHPEATRQFVQSHNLQKLNLLFITDAQRD-NLINSTEYIGKRASVLVKEAV 217 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 V D+L+ +++ + A++ R+ Sbjct: 218 EVRDLLKANRIYIELPALQWFIGRY 242 >gi|149234672|ref|XP_001523215.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL YB-4239] gi|146453004|gb|EDK47260.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL YB-4239] Length = 297 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 28/217 (12%) Query: 17 ISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 I + F + ++ +L + +++ R+G + +S+ Y+G K+ QKGTGRAR Sbjct: 79 IPLPTWFFRTEQPTRRDLLWNAVVYEADADRVGSNYVTLKSDKPYSGRKLRPQKGTGRAR 138 Query: 75 HSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN---LV 130 + + KA P L KK A++ AL+ ++ ++ V N Sbjct: 139 LGTGNSPHLDNEVKAHAIKGPHDWSTDLNKKQYDQAMQVALTSQYKQGNLFVTQNECQFK 198 Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR----------NIP--------- 171 + L+ + L I + N + R N+ Sbjct: 199 QSNLEVAQSFVSTHRLEQLSMLFITDGER-ENLSQSMRQFFISDKKLENLSKPEKIKALR 257 Query: 172 --NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + + V DIL+ +++ + K A+E L ++ Sbjct: 258 KLKGRVLSKEEVQVRDILKANRVFVEKPALEWLIAKY 294 >gi|289811596|ref|ZP_06542225.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +R GG F P + KK+ AL+ LS+ + ++V Sbjct: 1 RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV 60 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 ++ + KTK L + + + L + LII G +LD N Sbjct: 61 VEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLF 98 >gi|50553556|ref|XP_504189.1| YALI0E20493p [Yarrowia lipolytica] gi|49650058|emb|CAG79784.1| YALI0E20493p [Yarrowia lipolytica] Length = 271 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 11/205 (5%) Query: 12 EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71 E + V+ + + + +L R + +++ R+R+G S GR ++ Y+ K++ QKG G Sbjct: 54 EPTRLQPVTSQMLGAQVHKDLLWRAVVYEADRQRVGASNPPGREQMGYSTRKLHKQKGMG 113 Query: 72 RARHSSKSVSQFRGGGKA-FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL- 129 +AR GG A P LPK+V + A+R AL+ ++ + V+D Sbjct: 114 KARVGDAGSPTRTQGGFALDRNAPNKMATGLPKQVYASAIRAALTSQYQEGRLFVVDGPC 173 Query: 130 ----VSKECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 K+ T L ++D + + L N+ +++P + I Sbjct: 174 ELPESVKDNTTFGQQWLQGELGFGKKEMTVFLVDTERPILDSVLGKDNL-KADIVPKEFI 232 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 V DIL+ +V+ ++ L ++ Sbjct: 233 EVRDILKARNVVVEYDVLKWLAAKY 257 >gi|302408459|ref|XP_003002064.1| 54S ribosomal protein YmL6 [Verticillium albo-atrum VaMs.102] gi|261358985|gb|EEY21413.1| 54S ribosomal protein YmL6 [Verticillium albo-atrum VaMs.102] Length = 303 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 42/204 (20%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85 L ++ +L + ++ R G +K R EV + K++ QKG GRAR +K RG Sbjct: 89 LPLRRDLLHLAVIYEGDAHRQGTGSTKTRWEVHGSHRKVHPQKGLGRARVGTKQSPIRRG 148 Query: 86 GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV--------------- 130 GG V +A R ALS ++ +++V ++ + Sbjct: 149 GG-----------------VYDVAWRTALSYRYRRGELLVCEDGMELPLPRDFTDLLLAG 191 Query: 131 -SKEC-------KTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 E K V A L I + F + L V Sbjct: 192 YVDEPVARQYRRKWTEQVLAANAWGRADGRTLFITADKRPLLFDSMVDAGMHGRCLEVGD 251 Query: 181 INVYDILRCSKLVLSKSAIEALED 204 ++V D+L ++V+ ++A+ L + Sbjct: 252 VDVKDLLEEGRVVIERAALRELLE 275 >gi|34764037|ref|ZP_00144923.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886201|gb|EAA23491.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 127 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 83 FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142 GGG FGP P + KKVR+LALR ALS K + +++V+D + KTK +V Sbjct: 1 MVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVLDYDGIETPKTKVIVNL 60 Query: 143 FRALDLSNA--LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200 +D ++ D N L+ARN+ N +L I VY +L+ K++L+K A+ Sbjct: 61 VNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNEIGVYWLLKQEKVILTKEALA 120 Query: 201 ALEDRF 206 +E+ Sbjct: 121 VVEEVL 126 >gi|254569220|ref|XP_002491720.1| hypothetical protein [Pichia pastoris GS115] gi|238031517|emb|CAY69440.1| hypothetical protein PAS_chr2-1_0890 [Pichia pastoris GS115] Length = 261 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 20/204 (9%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 +S + ++ +L + + + R+G S GR E ++ K+ QKG+GRAR Sbjct: 52 ISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSGRARVGDA 111 Query: 79 SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI----------- 126 + G +A P LP KV + A R ALS + + +I Sbjct: 112 NSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCSSLIPFNR 171 Query: 127 --DNLVSKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 N++ K + F+A+ L+ I D +N A A N I+LL Sbjct: 172 GDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDDQISLLDK 231 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + + V +L+ +++ + +++++ Sbjct: 232 ENVEVRHLLKANRVFIDQASLQFF 255 >gi|313232345|emb|CBY09454.1| unnamed protein product [Oikopleura dioica] Length = 355 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 19/215 (8%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 E++ + + +G+ + I+ Q + L WQ+ K + S + R E TG+ Sbjct: 92 EVTKISKEVLQEGIAQLHPKIWTAVVDQQAIHETLEWQNTYKTVDMSFEQSRME---TGN 148 Query: 63 KMYVQK----GTGRARHSSKSVSQFRGGGKAFGPVPI----IGVHALPKKVRSLALRHAL 114 K + + G G R K+ F+GG AF P H + + R AL L Sbjct: 149 KRWAKPWGGSGHGYERVRDKTGPYFKGG--AFTDEPRRPFISNFHMIDRVTRVKALVSCL 206 Query: 115 SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD---RNFQLAARNIP 171 + KF D++++ NL + + R ++S ++ N+ + Sbjct: 207 TLKFLQGDMILVSNLSNSIDSISKKLNIKREPEMSYLVLNKDNNYPIPLENWIRSK---K 263 Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 NL PV+G+N +L+ KL+L +E LE R Sbjct: 264 YYNLFPVEGLNAKSLLKYDKLILDLETLEYLEKRL 298 >gi|328351776|emb|CCA38175.1| 50S ribosomal protein L4 [Pichia pastoris CBS 7435] Length = 256 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 20/204 (9%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 +S + ++ +L + + + R+G S GR E ++ K+ QKG+GRAR Sbjct: 47 ISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSGRARVGDA 106 Query: 79 SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI----------- 126 + G +A P LP KV + A R ALS + + +I Sbjct: 107 NSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCSSLIPFNR 166 Query: 127 --DNLVSKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLA--ARNIPNINLLPV 178 N++ K + F+A+ L+ I D +N A A N I+LL Sbjct: 167 GDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDDQISLLDK 226 Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202 + + V +L+ +++ + +++++ Sbjct: 227 ENVEVRHLLKANRVFIDQASLQFF 250 >gi|213584601|ref|ZP_03366427.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 95 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 45/92 (48%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKGTGRAR S +R GG F P + KK+ AL+ LS+ + ++V Sbjct: 1 RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV 60 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157 ++ + KTK L + + + L + LII G Sbjct: 61 VEKFSVEAPKTKLLAQKLKDMALEDVLIITGE 92 >gi|254292179|ref|ZP_04962949.1| ribosomal protein L4 [Vibrio cholerae AM-19226] gi|150421908|gb|EDN13885.1| ribosomal protein L4 [Vibrio cholerae AM-19226] Length = 102 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + A++ LS+ ++V++N + KTK LV + + L+L++ LI+ G ++D N Sbjct: 1 MYRGAMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLF 59 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LAARN+ +++ V GI+ ++ K++++ +A++ +E+ Sbjct: 60 LAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 101 >gi|70952888|ref|XP_745581.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525950|emb|CAH77561.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 458 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120 +K Q +G+ + S+ ++G K P + +K+ ++ LS KF Sbjct: 161 TNKFPCQNKSGKDSNDSEINMWYQGTPKNHPIRPFD-QTKINRKLLWKGMKILLSAKFAQ 219 Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGC--QLDRNFQLAARNIPNINL 175 + I V+DN + K KTKY V R + ++AL++ ++ NF A NI +I Sbjct: 220 DQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIASIKR 279 Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 V+G+N+Y++L+ +V + A++ L K Sbjct: 280 ENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 311 >gi|68471073|ref|XP_720313.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida albicans SC5314] gi|77022564|ref|XP_888726.1| hypothetical protein CaO19_7019 [Candida albicans SC5314] gi|46442175|gb|EAL01466.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida albicans SC5314] gi|76573539|dbj|BAE44623.1| hypothetical protein [Candida albicans] gi|238883264|gb|EEQ46902.1| hypothetical protein CAWG_05453 [Candida albicans WO-1] Length = 278 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 32/220 (14%) Query: 12 EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E K I + F + ++ IL + +++ + R+G + + +S+ Y+ K+ QKG Sbjct: 56 EPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKG 115 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128 +GRAR + KA P LP K+ S +++A + + ++ V++N Sbjct: 116 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 175 Query: 129 -LVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNI------------- 173 L + + +L+ L+ + N + I Sbjct: 176 ELDFQYGYDIITQSFVSVHNLNKLNLLFITNEPRDNLMES---IKKFYINEKEFNSLNKK 232 Query: 174 -----------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L + + V DILR ++ + SA++ Sbjct: 233 EKPKYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQWF 272 >gi|323164883|gb|EFZ50674.1| 50S ribosomal protein L4 [Shigella sonnei 53G] Length = 102 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + AL+ LS+ + ++V++ + KTK L + + + L + LII G +LD N Sbjct: 1 MYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLF 59 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LAARN+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 60 LAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 101 >gi|77409634|ref|ZP_00786307.1| ribosomal protein L4 [Streptococcus agalactiae COH1] gi|77171757|gb|EAO74953.1| ribosomal protein L4 [Streptococcus agalactiae COH1] Length = 113 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 55/112 (49%) Query: 95 IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII 154 + L +KVR LAL+ S K + + ++NL KT + AL + + +++ Sbjct: 1 RSYGYKLLQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASVLSALSIDSKVLV 60 Query: 155 DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + + L+ARN+PN+ + +V DI+ KL+++K AI +E Sbjct: 61 ILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAISTIEGVL 112 >gi|241957177|ref|XP_002421308.1| 60S ribosomal (large subunit) protein, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223644652|emb|CAX40642.1| 60S ribosomal (large subunit) protein, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 272 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 84/218 (38%), Gaps = 28/218 (12%) Query: 12 EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E K I + + F + ++ IL + +++ + R+G + +S+ Y+ K+ QKG Sbjct: 50 EPKTFIPLPTNFFNTEKPIRRDILWSCVTYEADKARVGSNYVILKSDSPYSNRKLRPQKG 109 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID- 127 +GRAR + KA P LP K+ S +++A + + ++ +++ Sbjct: 110 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNIVEN 169 Query: 128 --NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR----N------------ 169 N L+ N L I D N + + N Sbjct: 170 ELNFQYGYDIITQSFVSIHNLNKLNLLFITNEPRD-NLMESIKQFYINDKEFNSLNKKEK 228 Query: 170 ---IPNI--NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + + +L + + V DILR ++ + SA++ Sbjct: 229 PKYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQWF 266 >gi|325068032|ref|ZP_08126705.1| 50S ribosomal protein L4 [Actinomyces oris K20] Length = 123 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 89 AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE-CKTKYLVTRFRALD 147 GP P PKK+++ ALR ALSD+ + + VI V+ TK + R L Sbjct: 1 VHGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFVTTTVPSTKNALVALRNLT 60 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 AL+I Q D +L+ RN P ++L +N YD+L+ +V + S ++A Sbjct: 61 DRKALVIVDRQ-DDLSRLSLRNAPEAHVLWADQLNTYDVLKSDDVVFTASGLDAF 114 >gi|255731336|ref|XP_002550592.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404] gi|240131601|gb|EER31160.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404] Length = 266 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 26/217 (11%) Query: 12 EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69 E + + F + ++ IL + +++ + RIG + +S+ Y+ K+ QKG Sbjct: 43 EPTKFLPLPTTFFNTESPLRRDILWSSVVYEADKSRIGSNYVVLKSDSPYSNRKLRRQKG 102 Query: 70 TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID- 127 +G AR ++ KA P LPKK+ L ++A ++ + ++ +I+ Sbjct: 103 SGMARLGDRNSPHMDNEIKAHAIKGPHDWSTELPKKIYDLGFKNAFTNHYKLGNLNIIEN 162 Query: 128 --NLVSKECKTKYLVTRFRALDLSNALIIDGCQ-------LDRNF-------QLAARNIP 171 N + L+ N L I + ++ F L+ + P Sbjct: 163 DLNFKFNYDIITQMFISTHQLNGKNLLFIVDDERINLNNSINEFFTSQKKLNSLSKKEKP 222 Query: 172 NI------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ++ + + V DILR K+ + A++ Sbjct: 223 KYLSKLKGKVIKKEDVEVRDILRADKVFIELPALQWF 259 >gi|328910078|gb|AEB61674.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens LL3] Length = 100 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 56/99 (56%) Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 +A++ LS K N+I+V+++L KTK + + L + +I + L+A Sbjct: 1 MAIKSVLSSKVNDNNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSA 60 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 RNIP + ++ GINV D++ KL+++K+A+E +E+ Sbjct: 61 RNIPGVTVVQANGINVLDVVNHEKLLITKAAVEKVEEVL 99 >gi|226329482|ref|ZP_03805000.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198] gi|225202668|gb|EEG85022.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198] Length = 102 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + AL+ LS+ + ++V++ + KTK L + + + L + LII LD N Sbjct: 1 MYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-ADLDENLY 59 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LAARN+ +++ I+ ++ K+V++ A++ +E+ Sbjct: 60 LAARNLYKVDVRDAATIDPVSLIAFDKVVMTADAVKQVEEML 101 >gi|310765597|gb|ADP10547.1| 50S ribosomal protein L4 [Erwinia sp. Ejp617] Length = 102 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + AL+ LS+ + ++V++ + KTK LV + + + L + LII G +L+ N Sbjct: 1 MYRGALKSILSELVRQDRLIVVEKFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLF 59 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LAARN+ +++ I+ ++ K+V++ A++ +E+ Sbjct: 60 LAARNLYKVDVRDAAAIDPVSLIAFDKVVMTADAVKQVEEML 101 >gi|313200082|ref|YP_004038740.1| 50S ribosomal protein L4/l1e [Methylovorus sp. MP688] gi|312439398|gb|ADQ83504.1| ribosomal protein L4/L1e [Methylovorus sp. MP688] Length = 98 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 52/97 (53%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 +R LS+ + + VI+ V + KTK LV + + L +++ D N L+ARN Sbjct: 1 MRSILSELVRQDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARN 60 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +PN+ ++ Q + ++R +V +K+A++ LE+ Sbjct: 61 LPNVLVVEAQYADPVSLVRFPNVVATKAAVKKLEEML 97 >gi|254449313|ref|ZP_05062758.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015] gi|198261072|gb|EDY85372.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015] Length = 101 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 106 RSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL 165 A+ S+ ++V++++ KTK LV + + ++L + L++ D N L Sbjct: 1 YRGAMASIFSELVRQERLVVVEDITVDAPKTKQLVGKLKEMELESVLLV-SETDDINLYL 59 Query: 166 AARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 AARN+ ++++ V G++ D++R K++++ +++ +E++ K Sbjct: 60 AARNLNSVDVTDVAGLSPVDLIRFDKVLITVDSLKRVEEQLK 101 >gi|165940381|ref|ZP_02228894.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str. IP275] gi|165911690|gb|EDR30354.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str. IP275] Length = 92 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 115 SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174 S+ + +++++ + KTK L + + + L + LI+ G +LD N LAARN+ ++ Sbjct: 1 SELVRQDRLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVD 59 Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + V GI+ ++ K+V++ A++ +E+ Sbjct: 60 VRDVAGIDPVSLIAFDKVVMTADAVKQVEEML 91 >gi|253795617|ref|YP_003038713.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia cicadicola Dsem] gi|253739925|gb|ACT34260.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia cicadicola Dsem] Length = 187 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 16/183 (8%) Query: 25 ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFR 84 +P+ +++ RW + ++R ++ K R++V+ + K++ QKGTG ARHS+++V QFR Sbjct: 12 GFEPRLDVVSAAWRWYTNKRRWHVAQIKTRADVSCSRRKLFKQKGTGGARHSTRAVCQFR 71 Query: 85 GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144 GGGK F + L K+V++LALR AL+ K + ++ ++ L + Sbjct: 72 GGGK-FCARRTLLTPKLNKRVKTLALRSALALKLAAGELKFVEGLAAA------------ 118 Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 L S+ L+ + L A + N + + +L S ++++K A AL Sbjct: 119 KLTPSSFLVHACPRSAAVVGLRAAGVANAH---WSKLCARSLLATSAVIVTKRAFLALAQ 175 Query: 205 RFK 207 + K Sbjct: 176 KLK 178 >gi|253734700|ref|ZP_04868865.1| possible ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] gi|253727325|gb|EES96054.1| possible ribosomal protein L4 [Staphylococcus aureus subsp. aureus TCH130] Length = 71 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%) Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122 K + QKGTGRAR S +R GG F + KK+ AL+ LS+ + Sbjct: 1 KPWRQKGTGRARSGSIKSPIWRSGGVTFAARSQDHSQKVNKKMYRGALKSILSELVRQDR 60 Query: 123 IMVIDNLVSKE 133 ++V++ + Sbjct: 61 LIVVEKFSVEA 71 >gi|313622213|gb|EFR92739.1| 50S ribosomal protein L4 [Listeria innocua FSL J1-023] Length = 91 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176 K ++V++ L KTK + + + +I N +L+ARN+ I ++ Sbjct: 1 KVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVI 60 Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206 P + I+V ++ + KL+++K+A+E +E+ Sbjct: 61 PAESISVLEVAKHDKLIITKAAVEKVEEVL 90 >gi|94991546|ref|YP_599645.1| 50S ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] gi|94993444|ref|YP_601542.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] gi|94545054|gb|ABF35101.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] gi|94546952|gb|ABF36998.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] Length = 98 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 45/97 (46%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 ++ S K + + ++ L KT AL + +++ + + L+ARN Sbjct: 1 MKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARN 60 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +PN+ + +V DI+ KL+++K AI +E+ Sbjct: 61 LPNVTVATAATASVLDIVNADKLLVTKEAISTIEEVL 97 >gi|154283117|ref|XP_001542354.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150410534|gb|EDN05922.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 142 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 84 RGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSK-ECKTKYLVT 141 RGGG A GP P LPKKV LA R ALS ++ ++++ DN+ E +L Sbjct: 3 RGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLTE 62 Query: 142 RFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 F +LII + +R F+ A+ + +L + ++V D+L +L++ K+ Sbjct: 63 VFEKNQWGKYFGRSLIITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEKT 122 Query: 198 AIEAL 202 A++ + Sbjct: 123 ALDRM 127 >gi|315283849|ref|ZP_07871906.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120] gi|313606526|gb|EFR83353.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-208] gi|313612508|gb|EFR86593.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120] Length = 90 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177 ++V++ L KTK + + + +I N +L+ARN+ I ++P Sbjct: 1 VNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIP 60 Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206 + I+V ++ + KL+++K+A+E +E+ Sbjct: 61 AESISVLEVAKHDKLIITKAAVEKVEEVL 89 >gi|229077412|ref|ZP_04210064.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2] gi|228705888|gb|EEL58222.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2] Length = 78 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 43/76 (56%) Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 KTK ++ + L + +I + + +L+ARNIP + ++ G+NV D+L Sbjct: 2 LNAPKTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHD 61 Query: 191 KLVLSKSAIEALEDRF 206 KL+++K+A+E +E+ Sbjct: 62 KLIMTKAAVEKVEEVL 77 >gi|315304953|ref|ZP_07875045.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596] gi|313626678|gb|EFR95719.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596] Length = 86 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 46/85 (54%) Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++V++ L KTK + + + +I N +L+ARN+ I ++P + I Sbjct: 1 KLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESI 60 Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206 +V ++ + KL+++K+A+E +E+ Sbjct: 61 SVLEVAKHDKLIITKAAVEKVEEVL 85 >gi|76803058|ref|YP_331153.1| 50S ribosomal protein L4P [Natronomonas pharaonis DSM 2160] gi|109893609|sp|Q3IMY7|RL4_NATPD RecName: Full=50S ribosomal protein L4P gi|76558923|emb|CAI50519.1| ribosomal protein L4.eR [Natronomonas pharaonis DSM 2160] Length = 248 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 66/259 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++ +VR+LDG+D G + + +F + ++ R + + + + +E Sbjct: 1 MKATVRDLDGDDAGEVEL-PAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAE 59 Query: 57 VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 +G M Q GRAR V Q G A P + K R LA R Sbjct: 60 SPGSGRGMAHVPRQN--GRARE----VPQAVSGRPAHPPKAEKDRGLDINTKERKLATRS 113 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 A++ ++ + +V+ + KT+ V AL + Sbjct: 114 AIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDG 173 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + L++ LAARN+ ++ +NV D+ Sbjct: 174 KTVRAGRGTTRGRKYTEPKSVLVVTSDDQS----LAARNLAGSDVATADEVNVEDLAPGT 229 Query: 188 RCSKLVL-SKSAIEALEDR 205 + +L L ++SA+ + +R Sbjct: 230 QAGRLTLWTESALAEVAER 248 >gi|6979694|gb|AAF34602.1| Irb4 [Vibrio cholerae] Length = 83 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127 K TGRAR + +R GG F P + KK+ A+++ LS+ ++V++ Sbjct: 8 KSTGRARAGTIRSPIWRTGGVTFASKPQDHSQKVNKKMFRGAMKNILSELARQERLIVVE 67 Query: 128 NLVSKECKTKYLVTRF 143 N + K K V + Sbjct: 68 NFSVQAPKAKAPVAKL 83 >gi|325068031|ref|ZP_08126704.1| 50S ribosomal protein L4P [Actinomyces oris K20] Length = 69 Score = 92.0 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 + V + G+ G + + ++F ++ +V+ Q R G +K R +V G Sbjct: 6 TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65 Query: 63 KMYV 66 K Y Sbjct: 66 KPYR 69 >gi|313125791|ref|YP_004036061.1| LSU ribosomal protein l4p [Halogeometricum borinquense DSM 11551] gi|312292156|gb|ADQ66616.1| LSU ribosomal protein L4P [Halogeometricum borinquense DSM 11551] Length = 248 Score = 91.3 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 96/258 (37%), Gaps = 64/258 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56 ++ ++R+L+G+D G + + E +F + ++ R + ++ + + +E Sbjct: 1 MQATIRDLNGDDAGTLDLPE-VFETAYRPDLIKRAVLAAQANRKQAYGADPYAGMRTPAE 59 Query: 57 VAYTGSKMYVQKG-TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL 114 +G M GRAR V G KA P + KK R LA+R AL Sbjct: 60 SLGSGRGMSHDPRENGRAR----RVPHAVSGRKAHPPKAEKDQGKEINKKERKLAVRSAL 115 Query: 115 SD------------KFCSN---DIMVIDNLVSKECKTKYLVTRFRALDL----------- 148 + +F + ++V D+ KTK +V+ +L + Sbjct: 116 AATTDAELVAERGHRFDEDLDLPLVVSDDFE-DLVKTKEVVSLLESLGVHADVEHSEDNK 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 + L + + AARN+ +++ +N D+ Sbjct: 175 KVRAGQGKARGRKYKRPKSILFVTSEEPS----KAARNLAGVDVATASNVNAEDLAPGTH 230 Query: 189 CSKL-VLSKSAIEALEDR 205 +L + ++SA+E + DR Sbjct: 231 AGRLTIFTESAVEEVADR 248 >gi|289609973|emb|CBI60349.1| unnamed protein product [Sordaria macrospora] Length = 180 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNI 170 ALS + ++V+D L + KT+ L+ L +L+IDG ++ F LAARN+ Sbjct: 1 MALSSHAKAGSLVVLDGLTVENGKTQVLLGNLAKLGFGKTSLVIDGDAVENTFALAARNL 60 Query: 171 PNINLLPVQGINVYDILRCSKLVL 194 +N+LP G NVYDIL+ L + Sbjct: 61 RQVNVLPAGGANVYDILKHDTLAI 84 >gi|258543822|ref|ZP_05704056.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826] gi|258520911|gb|EEV89770.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826] Length = 103 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 50/102 (49%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164 + ALR S+ + + +++ L KTK V+ + ++ L+ N Sbjct: 1 MYRAALRSIFSELQRQDRLCLVEELNFSSNKTKDFVSYAAEMGFGQDFLLITESLNENLF 60 Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LA+RNIP++ ++ V+ I+ +LR K+ + K AIE + + Sbjct: 61 LASRNIPSVVVVDVEAIDPVLLLRHEKVAIDKLAIERINEWL 102 >gi|261334563|emb|CBH17557.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 459 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 86/254 (33%), Gaps = 58/254 (22%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V NL E + IF + + + ++R Q++ + + R E+ Sbjct: 116 PVFNLKNEVIYTRELDPFIFGMYPEVEELSKNLTYWMVRCQNFASKWDY---ETR-EIWR 171 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G R ++ + GG+ P +P K S + R L+ Sbjct: 172 KAKKNWPNTGMGMPRVGNRKNHLYTWGGRTKPSKP--WNMLMPTMDVKTWSKSNRMMLTL 229 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + V+D L +E + + R + L +DG + DR F Sbjct: 230 KMLQGRLQVVDRLTLEEPTQECYLELCRNMSWDVRHTGGGVLFMDGGSRITPSSEFDRAF 289 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD ++ +L Sbjct: 290 FFGSFFNGRNKIVRPTVLCDEQYDYNKTAAKQRMKGPKGAKNPIPINRFNAYDAMKHDRL 349 Query: 193 VLSKSAIEALEDRF 206 V+++ A+ LED Sbjct: 350 VITEGALMQLEDEL 363 >gi|221103288|ref|XP_002168893.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 426 Score = 88.2 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 84 RGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTR 142 GG + GP P + LP KVR + LR ALS KF D+ V+++ E VT Sbjct: 246 YKGGVSGGPKPKDYSYELPFKVRRMGLRTALSCKFAQGDLTVVEDYNNLTETNFSDAVT- 304 Query: 143 FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 +L L ++L +DG + D L + I+ P ++VY +L SKLVLS A+ L Sbjct: 305 --SLSLQSSLFVDGFENDYLDSLVS-GFEKIDFKPALLLHVYGMLIRSKLVLSLQAVRIL 361 Query: 203 EDRF 206 E++ Sbjct: 362 EEKL 365 >gi|71755521|ref|XP_828675.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834061|gb|EAN79563.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 351 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 86/254 (33%), Gaps = 58/254 (22%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V NL E + IF + + + ++R Q++ + + R E+ Sbjct: 8 PVFNLKNEVIYTRELDPFIFGMYPEVEELSKNLTYWMVRCQNFASKWDY---ETR-EIWR 63 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G R ++ + GG+ P +P K S + R L+ Sbjct: 64 KAKKNWPNTGMGMPRVGNRKNHLYTWGGRTKPSKP--WNMLMPTMDVKTWSKSNRMMLTL 121 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + V+D L +E + + R + L +DG + DR F Sbjct: 122 KMLQGRLQVVDRLTLEEPTQECYLELCRNMSWDVRHTGGGVLFMDGGSRITPSSEFDRAF 181 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD ++ +L Sbjct: 182 FFGSFFNGRNKIVRPTVLCDEQYDYNKTAAKQRMKGPKGAKNPIPINRFNAYDAMKHDRL 241 Query: 193 VLSKSAIEALEDRF 206 V+++ A+ LED Sbjct: 242 VITEGALMQLEDEL 255 >gi|169839689|ref|ZP_02872877.1| 50S ribosomal protein L4 [candidate division TM7 single-cell isolate TM7a] Length = 58 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 26/50 (52%) Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93 R G + +K R+EV G K + QKGTGRAR S GGG GP Sbjct: 1 ARQGSASTKTRAEVRGGGRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPN 50 >gi|292656684|ref|YP_003536581.1| 50S ribosomal protein L4.eR [Haloferax volcanii DS2] gi|291370536|gb|ADE02763.1| ribosomal protein L4.eR [Haloferax volcanii DS2] Length = 248 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 95/260 (36%), Gaps = 68/260 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56 ++ ++R+L+G+D G I + E +F + ++ R + ++ ++ + +E Sbjct: 1 MQATIRDLNGDDAGSIDLPE-VFETAYRPDLIKRAVIAAQANRKQPYGADPYARLRTPAE 59 Query: 57 VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 +G M Q G AR V G +A P + K R LA+R Sbjct: 60 SMGSGRGMSHDPRQN--GVAR----RVPHAVSGRRAHPPKAEKDQGKEINTKERKLAVRS 113 Query: 113 ALS-----DKFCSND----------IMVIDNLVSKECKTKYLVTRFRALDLS-------- 149 AL+ + ++V D+ KT+ +V ++L +S Sbjct: 114 ALAATTDPELVAERGHRFDDDVELPLVVSDDFE-DLVKTQEVVDLLQSLGVSDDIERSEE 172 Query: 150 --------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 + L + + AARN+ +++ ++ D+ Sbjct: 173 NKKVKSGQGKLRGRKYTRPKSILFVTADEPS----KAARNLAGVDVATAANVSAEDLAPG 228 Query: 188 -RCSKL-VLSKSAIEALEDR 205 +L + ++SA+E + +R Sbjct: 229 THAGRLTLFTESALEEVAER 248 >gi|11499508|ref|NP_070749.1| 50S ribosomal protein L4P [Archaeoglobus fulgidus DSM 4304] gi|3914743|sp|O28355|RL4_ARCFU RecName: Full=50S ribosomal protein L4P gi|2648622|gb|AAB89332.1| LSU ribosomal protein L4P (rpl4P) [Archaeoglobus fulgidus DSM 4304] Length = 252 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 60/258 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V NL GE I + E +FA + + I+ R + +R + S V Y+ Sbjct: 1 MKAKVLNLKGEVTEEIELPE-VFAEEFRPDIIKRAVLALQSHRRQPYGPNP-LSGVDYSW 58 Query: 62 SKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 G G AR + V Q GG +A P P + KK AL+ A Sbjct: 59 ENWGP--GHGYARVPRWKLGRRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSA 116 Query: 114 LSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDL------------- 148 ++ + V+ N + +TK + FRA+ + Sbjct: 117 IAATANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRY 176 Query: 149 ---------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RC 189 + L++ G D AA+N+P ++ + V+ +NV ++L Sbjct: 177 RAGRGKMRGRRYVKKKSVLLVVG--KDDGVVKAAKNLPGVDAVVVKDLNV-ELLAPGCHP 233 Query: 190 SKL-VLSKSAIEALEDRF 206 +L V +KSA+E L + Sbjct: 234 GRLTVWTKSAVEYLGEWL 251 >gi|284165493|ref|YP_003403772.1| 50S ribosomal protein L4P [Haloterrigena turkmenica DSM 5511] gi|284015148|gb|ADB61099.1| 50S ribosomal protein L4P [Haloterrigena turkmenica DSM 5511] Length = 250 Score = 86.2 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 64/259 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +E +VR+LDG + G + + +F + ++AR +R ++ + +E Sbjct: 1 MEATVRDLDGAEAGSVEL-PAVFETNYRPDLIARAVRVAQANRKQDYGADEFAGLRTPAE 59 Query: 57 VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 +G M Q+G GR V Q G KA P ++ K + LA+R Sbjct: 60 SFGSGRGMAHVPRQEGRGR------RVPQTVKGRKAHPPKAEKDQSESINTKAKKLAVRS 113 Query: 113 AL-----SDKFCS------NDI---MVIDNLVSKECKTKYLVTRFRALDLS--------- 149 A+ ++ D+ +V+D+ KT+ +V A L+ Sbjct: 114 AIAATTDAEIVAERGHEFDGDLELPVVVDDEFEDLQKTREVVDFLEATGLADDIERADEG 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 + L + + + AARN+ ++ +N D+ Sbjct: 174 RSVRSGQGKARGRKYKTPTSILFVTSSETGPS--RAARNLAGADVTTAAEVNAEDLAPGA 231 Query: 188 RCSKL-VLSKSAIEALEDR 205 + +L V ++SA+E + DR Sbjct: 232 QPGRLTVWTESALEEVADR 250 >gi|254283297|ref|ZP_04958265.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B] gi|219679500|gb|EED35849.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B] Length = 86 Score = 86.2 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 ++ KTK L + + L N LII ++D+N LA+RN+ +++ V+G+N ++ Sbjct: 10 DLEQPKTKLLAEQLKGFGLENVLII-SSEVDKNLYLASRNLHRVDVSDVEGVNPVSLVAF 68 Query: 190 SKLVLSKSAIEALEDRF 206 K++++ A++ E+ Sbjct: 69 DKVLVTVDAVKKFEEAL 85 >gi|301500960|ref|YP_003795425.1| ribosomal protein L4 [Alveolata sp. CCMP3155] gi|300069506|gb|ADJ66613.1| ribosomal protein L4 [Chromerida sp. RM11] Length = 236 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 11/154 (7%) Query: 50 KSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRS 107 + GRS ++ + K++ QKGTGRAR SK+ ++GGG FGP G KK+ Sbjct: 64 HTLGRSSISGSKRKLWRQKGTGRARAGSKTGPLWKGGGVVFGPRGERTSGTQKRNKKLWK 123 Query: 108 LALRHALSDKFCSNDIMVI------DNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLD 160 AL + L DK +++++ + + K L+ R L + L + Sbjct: 124 AALNYVLYDKLKHENLVLMLAPWAWEINPNPLPSRKVLLKGLRHILQDKSWLFVVPNGTC 183 Query: 161 RNFQLAA--RNIPNINLLPVQGINVYDILRCSKL 192 + A + + + + DILR K+ Sbjct: 184 LDTYRRAFFEDDMKVTVRSRSTVKCIDILRAEKV 217 >gi|330508497|ref|YP_004384925.1| 50S ribosomal protein L4/L1 family [Methanosaeta concilii GP-6] gi|328929305|gb|AEB69107.1| ribosomal protein L4/L1 family [Methanosaeta concilii GP-6] Length = 257 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 66/257 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEV 57 ++ +V +L G G I + +F + + I+ R + + S V Sbjct: 1 MKTNVIDLSGNAAGEIEL-PAVFEEEYRPDIIKRAVLAAQANRLQAYGPHFYAGMNTSAV 59 Query: 58 AYTGSKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLA 109 ++ G G +R + V GG ++ P P + + KK R A Sbjct: 60 SWGT-------GHGTSRVLRLKNGRRAAGVPMAVGGRRSHAPQPNAVYSEKVNKKERRKA 112 Query: 110 LRHALSDKFCSN-----------DIMVIDNLVSKE-CKTKYLVTRFRALDL--------- 148 +R A++ S ++ V+ + KT ++ A L Sbjct: 113 IRSAIAATASSGLVEARGHKFSRELPVVAKNDLEALSKTSDIIKFLMAAGLWDDVLRAKA 172 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 +L+I D AARN+P ++ + V +N ++L Sbjct: 173 GRHIRAGKGKLRGRKYKGRKSLLIVAGN-DAGLGKAARNLPGVDFVTVDMLNA-ELLAPG 230 Query: 188 -RCSKL-VLSKSAIEAL 202 R +L V ++S++E L Sbjct: 231 TRAGRLTVWTESSLEKL 247 >gi|256810688|ref|YP_003128057.1| 50S ribosomal protein L4P [Methanocaldococcus fervens AG86] gi|256793888|gb|ACV24557.1| 50S ribosomal protein L4P [Methanocaldococcus fervens AG86] Length = 252 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 64/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 ++ V NL+GE I + +F + + ++ R + KG +A Sbjct: 1 MKAVVYNLNGEAVKEIDL-PAVFEEEYRPDLIRRAFLSAFTARLQ----PKGSDPLAGMR 55 Query: 60 -TGSKMYVQKGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG GRAR + V Q GG +A P I + KK R A++ Sbjct: 56 TSAKNIG--KGHGRARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIK 113 Query: 112 HALSDKFC------------SNDI-MVIDNLVSKECKTKYLVTRFRALDLS--------- 149 A++ + ++ +V+++ + KTK + F L +S Sbjct: 114 SAIAATANPELVKERGHVFDNENLPIVVESSFEELQKTKDVFAVFEKLGISSDVIRAKNG 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + L++ G + N LA+RN+P ++++ + + + + Sbjct: 174 IKIRAGKGKMRGRRYKKPRSVLVVVGDKC--NAILASRNLPGVDVITAKDLGIIHLAPGG 231 Query: 188 RCSKL-VLSKSAIEALEDRFK 207 +L V ++SA+E L++RF+ Sbjct: 232 VAGRLTVWTESALEKLKERFE 252 >gi|289191590|ref|YP_003457531.1| 50S ribosomal protein L4P [Methanocaldococcus sp. FS406-22] gi|288938040|gb|ADC68795.1| 50S ribosomal protein L4P [Methanocaldococcus sp. FS406-22] Length = 252 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 64/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 ++ V NL+GE I + +F + + ++ R + KG +A Sbjct: 1 MKAVVYNLNGEAVKEIDL-PAVFEEEYRPDLIKRAFLSAFTARLQ----PKGSDPMAGMR 55 Query: 60 -TGSKMYVQKGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG GRAR + V Q GG +A P I + KK R A++ Sbjct: 56 TSAKNIG--KGHGRARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIK 113 Query: 112 HALSD------------KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDLS--------- 149 A++ F + ++ +V+++ + KTK + F L +S Sbjct: 114 SAIAATANPELVKERGHIFETENLPIVVESSFEELQKTKDVFAVFEKLGISSDVIRAKNG 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + L++ G + N LA+RN+P ++++ + + + + Sbjct: 174 IKIRAGKGKMRGRRYKKPRSILVVVGDKC--NAILASRNLPGVDVITAKDLGIIHLAPGG 231 Query: 188 RCSKL-VLSKSAIEALEDRFK 207 +L V ++SA+E L++RF+ Sbjct: 232 VAGRLTVWTESALEKLKERFE 252 >gi|303244464|ref|ZP_07330799.1| 50S ribosomal protein L4P [Methanothermococcus okinawensis IH1] gi|302485162|gb|EFL48091.1| 50S ribosomal protein L4P [Methanothermococcus okinawensis IH1] Length = 256 Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 69/264 (26%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARV----LRWQSWRKRIGCSKSKGRSE 56 ++++ V N+DG +KG + +F + + ++ R L + K + K S Sbjct: 4 IMKVKVYNMDGSEKGETEL-PAVFETEYRPDLIRRAFLSSLTARLQPKGVDFMAGKRTSA 62 Query: 57 VAYTGSKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSL 108 + KG GRAR + V Q GG + P ++ + +K R Sbjct: 63 KSIG-------KGHGRARVKRTGQGQGAF-VPQAVGGRRCHPPKVEKILYERINRKERLK 114 Query: 109 ALRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL------ 148 AL A++ S + +++DN KTK ++ F+ L L Sbjct: 115 ALMSAIAASANSEIVKSRGHVIDEVPSIPLIVDNEFENLKKTKEVLETFKNLGLDKDVER 174 Query: 149 ----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + L++ D A++N+P ++++ + V I Sbjct: 175 AKEGIKIRAGIGKLRGRKYRKPKSVLVVVSSLCD--AVKASKNLPGVDVITADDLGVMHI 232 Query: 187 ---LRCSKLVL-SKSAIEALEDRF 206 +L L ++ A+E L +RF Sbjct: 233 APGADAGRLTLWTEKAVEKLNERF 256 >gi|257387877|ref|YP_003177650.1| ribosomal protein L4/L1e [Halomicrobium mukohataei DSM 12286] gi|257170184|gb|ACV47943.1| ribosomal protein L4/L1e [Halomicrobium mukohataei DSM 12286] Length = 247 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 94/257 (36%), Gaps = 63/257 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++ ++ +LDG + + +F + ++A +R Q ++ + +E Sbjct: 1 MQATIYDLDGNAGDEVDL-PAVFETTVRPDLIATAVRAQQANRKQDYGSDEYAGLRTPAE 59 Query: 57 VAYTGSKM--YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHA 113 +G M ++G G+AR V Q GG A P + K R LA R A Sbjct: 60 SFGSGRGMAHVPREG-GQAR----RVPQAVGGRPAHPPKAEKDRSLTINDKERKLATRSA 114 Query: 114 L-----SDKFCS------NDI---MVIDNLVSKECKTKYLVTRFRALDL----------- 148 + S+ +D+ +V+D+ KT+ +V +L + Sbjct: 115 IAATADSELVAERGHEFDDDLELPLVVDDSFEDLQKTQAVVDTLESLGVHADIERADDTK 174 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189 S+ L + + AARN+ ++ + +N D+ Sbjct: 175 IKAGKGSARGRKYRRPSSILFVTSEEPS----KAARNLAGADVTTAREVNAEDLAPGTAP 230 Query: 190 SKLVL-SKSAIEALEDR 205 +L + ++SA+ + +R Sbjct: 231 GRLTIWTESALAEVSER 247 >gi|261403780|ref|YP_003248004.1| 50S ribosomal protein L4P [Methanocaldococcus vulcanius M7] gi|261370773|gb|ACX73522.1| 50S ribosomal protein L4P [Methanocaldococcus vulcanius M7] Length = 252 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 62/260 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ V NL+GE+ I + IF + + ++ R + KG S+V Sbjct: 1 MKAVVYNLNGEEIKEIDL-PSIFEEEYRPDLIKRAFLSAFTARLQ----PKG-SDVLAGL 54 Query: 62 SKMYVQ--KGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 KG GRAR + V Q GG +A P + KK R A++ Sbjct: 55 RTSAKNIGKGHGRARVDRVPQGWAARVPQAVGGRRAHPPKVEKKLWERVNKKERIKAIKS 114 Query: 113 ALSD------------KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150 A++ F S ++ +V+++ KTK + F L + Sbjct: 115 AIAATANPELVKERGHVFESENLPIVVEDSFENLQKTKDVFAVFEKLGIDKDVIRAKNGI 174 Query: 151 -------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 L++ G + + LA+RN+P ++++ + + + + Sbjct: 175 KIRAGKGKMRGRRYRKPRSVLVVVGDKCE--AILASRNLPGVDVITAKDLGIIHLAPGGV 232 Query: 189 CSKL-VLSKSAIEALEDRFK 207 +L V ++ A+E L++RF+ Sbjct: 233 AGRLTVWTEKALEKLKERFE 252 >gi|213586154|ref|ZP_03367980.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 50 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 25 ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74 + ++ +V+ + R G K R+EV +G K + QKGTGRAR Sbjct: 1 GRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 50 >gi|289579899|ref|YP_003478365.1| 50S ribosomal protein L4P [Natrialba magadii ATCC 43099] gi|289529452|gb|ADD03803.1| 50S ribosomal protein L4P [Natrialba magadii ATCC 43099] Length = 250 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 64/259 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 +E +VR+LDG D G + + +F + + ++AR +R ++ + + +E Sbjct: 1 MEATVRDLDGSDAGSVDL-PAVFDTQYRPDLIARAVRVAQANRKQDYGADEFAGKRTPAE 59 Query: 57 VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 +G M Q GRAR V Q G KA P ++ K + LA+R Sbjct: 60 SFGSGRGMAHVPRQ--DGRAR----RVPQAVKGRKAHPPKAEKDWSESINTKEKKLAVRS 113 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLS--------- 149 A++ + + +V+ + KT+ +V A L Sbjct: 114 AIAATTDAEIVAERGHAFDDDAEIPVVVSDEFEDLHKTQEVVEFLEAAGLEDDIKRADEG 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 + L + + + AARN+ ++ +N D+ Sbjct: 174 RSVRAGQGKARGRKYKTPTSILFVTSSETGPS--RAARNLAGADVATAAEVNAEDLAPGA 231 Query: 188 RCSKL-VLSKSAIEALEDR 205 + +L V ++SA+E + DR Sbjct: 232 QPGRLTVWTESALEEVADR 250 >gi|284116244|ref|ZP_06386717.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3] gi|283829528|gb|EFC33883.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3] Length = 98 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 48/95 (50%) Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 ++ ALS K + +++V+ +L E KTK + + L + ++ + A RN Sbjct: 1 MQSALSSKMAAGELLVLADLSLPEPKTKLMAKAVKQLGATGPVLFVVGRDHDAVFRATRN 60 Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 + + +P + + VYD+LR LV+ K + +++ Sbjct: 61 LAQVKAVPPEELTVYDVLRYQTLVVLKDELPNVQE 95 >gi|10120922|pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution gi|14278036|pdb|1GIY|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix gi|28373725|pdb|1ML5|FF Chain f, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi|66361022|pdb|1YL3|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordinates For The Small Subunit Are In The Pdb Entry 1yl4. gi|88192262|pdb|2B66|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400 gi|88192325|pdb|2B9N|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf2, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400. gi|88192380|pdb|2B9P|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Complex With Trnas And Mrna With A Stop Codon In The A-Site. This File Contains The 50s Subunit From A Crystal Structure Of The Ribosome In Complex With Trnas And Mrna With A Stop Codon In The A-Site And Is Described In Remark 400 Length = 246 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 94/255 (36%), Gaps = 60/255 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +E ++ +LDG G + + + +F + ++ + +R ++ + +E Sbjct: 1 MEATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59 Query: 57 VAYTGS-KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114 +G + +V K GRAR V Q G A P L K R LA+R AL Sbjct: 60 SFGSGRGQAHVPKLDGRAR----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSAL 115 Query: 115 SDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL------------- 148 + ++ + +V+ + KT+ +V+ ALD+ Sbjct: 116 AATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIK 175 Query: 149 --------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191 ++ L + + AARN+ ++ +N D+ + Sbjct: 176 AGQGSARGRKYRRPASILFVTSDEPST----AARNLAGADVATASEVNTEDLAPGGAPGR 231 Query: 192 L-VLSKSAIEALEDR 205 L V ++SA+ + +R Sbjct: 232 LTVFTESALAEVAER 246 >gi|313616907|gb|EFR89559.1| 50S ribosomal protein L4 [Listeria innocua FSL S4-378] Length = 75 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 40/74 (54%) Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 KTK + + + +I N +L+ARN+ I ++P + I+V ++ + KL Sbjct: 1 APKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKL 60 Query: 193 VLSKSAIEALEDRF 206 +++K+A+E +E+ Sbjct: 61 IITKAAVEKVEEVL 74 >gi|55378383|ref|YP_136233.1| 50S ribosomal protein L4P [Haloarcula marismortui ATCC 43049] gi|57015333|sp|P12735|RL4_HALMA RecName: Full=50S ribosomal protein L4P; AltName: Full=Hl6; AltName: Full=Hmal4 gi|188596004|pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins gi|188596035|pdb|3CC4|C Chain C, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|188596066|pdb|3CC7|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u gi|188596097|pdb|3CCE|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a gi|188596128|pdb|3CCJ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u gi|188596159|pdb|3CCL|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model. gi|188596190|pdb|3CCM|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u gi|188596221|pdb|3CCQ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u gi|188596252|pdb|3CCR|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model. gi|188596283|pdb|3CCS|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a gi|188596314|pdb|3CCU|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c gi|188596345|pdb|3CCV|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a gi|188596376|pdb|3CD6|C Chain C, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With Cc- Puromycin gi|194368707|pdb|3CPW|C Chain C, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581910|pdb|3CMA|C Chain C, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|206581943|pdb|3CME|C Chain C, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|228312144|pdb|3G4S|C Chain C, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit gi|228312200|pdb|3G6E|C Chain C, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit gi|228312236|pdb|3G71|C Chain C, Co-Crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit gi|290790038|pdb|3I55|C Chain C, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit gi|290790069|pdb|3I56|C Chain C, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit gi|148802|gb|AAA86860.1| ribosomal protein L6 [Haloarcula marismortui] gi|55231108|gb|AAV46527.1| 50S ribosomal protein L4 [Haloarcula marismortui ATCC 43049] Length = 246 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 94/255 (36%), Gaps = 60/255 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++ ++ +LDG G + + + +F + ++ + +R ++ + +E Sbjct: 1 MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59 Query: 57 VAYTGS-KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114 +G + +V K GRAR V Q G A P L K R LA+R AL Sbjct: 60 SFGSGRGQAHVPKQDGRAR----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSAL 115 Query: 115 SDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL------------- 148 + ++ + +V+ + KT+ +V+ ALD+ Sbjct: 116 AATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIK 175 Query: 149 --------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191 ++ L + + AARN+ ++ +N D+ + Sbjct: 176 AGQGSARGRKYRRPASILFVTSDEPST----AARNLAGADVATASEVNTEDLAPGGAPGR 231 Query: 192 L-VLSKSAIEALEDR 205 L V ++SA+ + +R Sbjct: 232 LTVFTESALAEVAER 246 >gi|300710376|ref|YP_003736190.1| 50S ribosomal protein L4P [Halalkalicoccus jeotgali B3] gi|299124059|gb|ADJ14398.1| 50S ribosomal protein L4P [Halalkalicoccus jeotgali B3] Length = 250 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 60/254 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++ + +LDGE+ G I + E +F + ++ R + ++ + +E Sbjct: 1 MQATTLDLDGEEAGEIDLPE-VFETTFRPDLIKRAVLAAQANRQQDYGADPFSGKRTSAE 59 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL- 114 TG M + K V Q GG +A P + K R LA R A+ Sbjct: 60 SLGTGRGMARVPRSNG--QG-KRVPQAVGGRRAHPPKAEKDRTLDINTKERKLATRSAIA 116 Query: 115 ----SDKFCSND----------IMVIDNLVSKECKTKYLVTRFRALDL------------ 148 +D ++V D + KTK +++ ++ + Sbjct: 117 ATTDTDLVAERGHRFGEDVSLPLVVSDEFE-ELIKTKEVLSFLESVGIADDIERAEDGRS 175 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189 + L + + + AARN+ +++ + ++ D+ Sbjct: 176 VRAGRGKTRGRKYKQPKSILFVTSSEAGPS--KAARNLAGVDVATAREVSAEDLAPGTHA 233 Query: 190 SKL-VLSKSAIEAL 202 +L V ++SAIE + Sbjct: 234 GRLTVWTESAIEEV 247 >gi|207342484|gb|EDZ70238.1| YML025Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|323303662|gb|EGA57450.1| Yml6p [Saccharomyces cerevisiae FostersB] gi|323332281|gb|EGA73691.1| Yml6p [Saccharomyces cerevisiae AWRI796] gi|323336203|gb|EGA77474.1| Yml6p [Saccharomyces cerevisiae Vin13] gi|323347095|gb|EGA81370.1| Yml6p [Saccharomyces cerevisiae Lalvin QA23] gi|323352992|gb|EGA85292.1| Yml6p [Saccharomyces cerevisiae VL3] Length = 181 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 33/168 (19%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 QKG+GRAR + GG+A P LP KV S+A +ALS ++ S + Sbjct: 2 PQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLF 61 Query: 125 VI--DNLVSKECKTKYLVTRFRALDLS-------------------------NALIIDGC 157 VI + + + + R ++ + L+ Sbjct: 62 VIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLFITD 121 Query: 158 QLDRNFQLAARNIP---NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 + ++ P ++++ + + V DILR + + A+E L Sbjct: 122 KTREGLIKSSD--PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 167 >gi|15668349|ref|NP_247145.1| 50S ribosomal protein L4P [Methanocaldococcus jannaschii DSM 2661] gi|1710567|sp|P54015|RL4_METJA RecName: Full=50S ribosomal protein L4P gi|1498950|gb|AAB98162.1| LSU ribosomal protein L4P (rplD) [Methanocaldococcus jannaschii DSM 2661] Length = 252 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 101/261 (38%), Gaps = 64/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 ++ V NL+GE I + +F + + ++ R + KG +A Sbjct: 1 MKAVVYNLNGEAVKEIDL-PAVFEEEYRPDLIKRAFLSAFTARLQ----PKGSDPLAGLR 55 Query: 60 -TGSKMYVQKGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG GRAR + V Q GG +A P I + KK R A++ Sbjct: 56 TSAKNIG--KGHGRARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIK 113 Query: 112 HALSDKFC-------------SNDIMVIDNLVSKECKTKYLVTRFRALDLS--------- 149 A++ N +++++ + KTK + F L +S Sbjct: 114 SAIAATANPELVKERGHVFETENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNG 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + L++ G + N LA+RN+P ++++ + + + + Sbjct: 174 IKIRAGKGKMRGRKYKKPRSILVVVGDKC--NAILASRNLPGVDVITAKDLGIIHLAPGG 231 Query: 188 RCSKL-VLSKSAIEALEDRFK 207 +L V ++SA+E L++RF+ Sbjct: 232 VAGRLTVWTESALEKLKERFE 252 >gi|322372167|ref|ZP_08046708.1| 50S ribosomal protein L4P [Haladaptatus paucihalophilus DX253] gi|320548176|gb|EFW89849.1| 50S ribosomal protein L4P [Haladaptatus paucihalophilus DX253] Length = 248 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 96/258 (37%), Gaps = 64/258 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++ +VR+L+GED + + + +F + ++ R + ++ + + +E Sbjct: 1 MQATVRDLNGEDADTVDLPD-VFDTTVRTDLIKRAVLAAQANRKQDYGTDPHAGMRTSAE 59 Query: 57 VAYTGSKMYVQKGT-GRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL 114 +G M T GRA V GG A P ++ KK R LA+R A+ Sbjct: 60 SPGSGRGMAHIPRTNGRA----ARVPSAVGGRPAHPPKAEKDRSLSINKKERKLAVRSAI 115 Query: 115 SDKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDL----------- 148 + + ++V D+ KT+ +V+ A+ + Sbjct: 116 AATADAELVAERGHDFDEETELPLVVSDDFE-DLVKTQEVVSFLEAVGIDADIERAEENK 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 + L + + R AARN+ ++ + +N D+ + Sbjct: 175 KVRAGRGKTRGRKYKTPKSILFVTSEEPSR----AARNLAGADVATAREVNAEDLAPGTQ 230 Query: 189 CSKL-VLSKSAIEALEDR 205 +L V ++SA+E + DR Sbjct: 231 AGRLTVWTESALEEVADR 248 >gi|73667661|ref|YP_303676.1| 50S ribosomal protein L4P [Methanosarcina barkeri str. Fusaro] gi|109893602|sp|Q46G96|RL4_METBF RecName: Full=50S ribosomal protein L4P gi|72394823|gb|AAZ69096.1| LSU ribosomal protein L4P [Methanosarcina barkeri str. Fusaro] Length = 253 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 90/262 (34%), Gaps = 64/262 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKS 51 M +L G+ I + + +F + + ++ + + + + + Sbjct: 1 MATAKTIDLTGKVVREIELPD-VFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSA 59 Query: 52 KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLAL 110 +G T + + AR RGG +A P P + K R A+ Sbjct: 60 RGWGSGRGTSHVPRLVNSSRAARV-----PHARGGRRAHPPKPEADRSEKVNTKERRYAI 114 Query: 111 RHALSD------------KFCSNDIMVIDNLVSKECKTKYLVTRFRALDL---------- 148 R A++ F + +V +N + KTK ++ +A+ + Sbjct: 115 RSAIAATRDPTLVSLRGHIFEAELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYG 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ G AARN+ +++ V +N ++L Sbjct: 175 RHIRAGRGKLRGRKYKHKKSVLIVAGESAP--ILKAARNLSGVDVATVDSLNA-ELLAPG 231 Query: 188 -RCSKLVL-SKSAIEALEDRFK 207 +L + ++SA+E LE F+ Sbjct: 232 THAGRLTIWTESAVEKLEGAFQ 253 >gi|282164891|ref|YP_003357276.1| 50S ribosomal protein L4P [Methanocella paludicola SANAE] gi|282157205|dbj|BAI62293.1| 50S ribosomal protein L4P [Methanocella paludicola SANAE] Length = 250 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 94/256 (36%), Gaps = 63/256 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56 +E ++ + G+ + V E +F + ++ + + + + + + Sbjct: 1 MEANILDKSGKKASTMEVPE-VFNEPFRPDVIKKAVLAAQANRLQPYGPDRTAGTLTSAH 59 Query: 57 VAYTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 +G + G+ AR + Q +GG A P P + K R LA+R Sbjct: 60 SWGSGRGAAHVPRLTNGSRAARVT-----QAKGGRSAHAPNPNKDYSEKINDKERILAIR 114 Query: 112 HALSD-------KFC----SNDI-MVIDNLVSKECKTKYLVTRFRALDLS---------- 149 A + K ++ +++ + + KTK +V A+ L Sbjct: 115 SAAAATMNKELVKARGYKFEGELPLIVSDDIESFTKTKEVVELLTAIGLEADLERAKIKQ 174 Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---- 188 LI+ G D+ +AARNIP +++ + +N ++L Sbjct: 175 VRGGRGKMRGRQYKKKVGVLIVVGE--DKGIVMAARNIPGCDVVTLDEVNT-ELLAPGTQ 231 Query: 189 CSKL-VLSKSAIEALE 203 +L V S+SA++ +E Sbjct: 232 AGRLTVWSESALKMME 247 >gi|21228227|ref|NP_634149.1| 50S ribosomal protein L4P [Methanosarcina mazei Go1] gi|46396644|sp|Q8PV49|RL4_METMA RecName: Full=50S ribosomal protein L4P gi|20906683|gb|AAM31821.1| LSU ribosomal protein L4 [Methanosarcina mazei Go1] Length = 253 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 64/262 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55 M +L G G I + +F + ++ + + + + K + Sbjct: 1 MATAKTIDLTGRTVGEIEL-PAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSA 59 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALR 111 +G + K + RA V +GG +A P P + K R A+R Sbjct: 60 TGWGSGRGVSHVPRLKNSSRA----ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIR 115 Query: 112 HALSDKF-------------CSNDIMVIDNLVSKECKTKYLVTRFRALDL---------- 148 A++ I+ +++L + E +TK ++ A L Sbjct: 116 SAIAATIDPTLVNLRGHIFEAELPIVAVNDLENLE-RTKQVIEFLEAAGLYEDVLRAKYG 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ G AARN+ ++++ V +N ++L Sbjct: 175 RHIRAGRGKLRGRKYKHKKSVLIVAGENSP--ILKAARNLSGVDVVTVDSLNA-ELLAPG 231 Query: 188 -RCSKL-VLSKSAIEALEDRFK 207 +L V ++SAI LE F+ Sbjct: 232 THAGRLTVWTESAIGKLEGAFQ 253 >gi|15825945|pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|20150990|pdb|1KQS|C Chain C, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis gi|22218924|pdb|1K8A|E Chain E, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22218958|pdb|1K9M|E Chain E, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219001|pdb|1KD1|E Chain E, Co-Crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|22219328|pdb|1M1K|E Chain E, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|24159023|pdb|1M90|E Chain E, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit gi|34811120|pdb|1K73|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit gi|34811150|pdb|1KC8|E Chain E, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit gi|34811189|pdb|1N8R|E Chain E, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M gi|34811219|pdb|1NJI|E Chain E, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit gi|37927903|pdb|1Q7Y|E Chain E, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit gi|37927938|pdb|1Q81|E Chain E, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit. gi|37927974|pdb|1Q82|E Chain E, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit gi|37928010|pdb|1Q86|E Chain E, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit. gi|39654675|pdb|1QVF|C Chain C, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|39654708|pdb|1QVG|C Chain C, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui gi|50513472|pdb|1S72|C Chain C, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution gi|55670538|pdb|1W2B|C Chain C, Trigger Factor Ribosome Binding Domain In Complex With 50s gi|66360786|pdb|1YHQ|C Chain C, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360819|pdb|1YI2|C Chain C, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360852|pdb|1YIJ|C Chain C, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360885|pdb|1YIT|C Chain C, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360918|pdb|1YJ9|C Chain C, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 gi|66360951|pdb|1YJN|C Chain C, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|66360984|pdb|1YJW|C Chain C, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui gi|83753128|pdb|1VQ4|C Chain C, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753160|pdb|1VQ5|C Chain C, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753192|pdb|1VQ6|C Chain C, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753224|pdb|1VQ7|C Chain C, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753255|pdb|1VQ8|C Chain C, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753287|pdb|1VQ9|C Chain C, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753318|pdb|1VQK|C Chain C, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui gi|83753349|pdb|1VQL|C Chain C, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753380|pdb|1VQM|C Chain C, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753412|pdb|1VQN|C Chain C, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|83753443|pdb|1VQO|C Chain C, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui gi|83753475|pdb|1VQP|C Chain C, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui gi|145580175|pdb|2OTJ|C Chain C, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui gi|145580206|pdb|2OTL|C Chain C, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui gi|171848839|pdb|2QA4|C Chain C, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit gi|208435497|pdb|2QEX|C Chain C, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit gi|228311914|pdb|3CXC|C Chain C, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui Length = 246 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 94/255 (36%), Gaps = 60/255 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++ ++ +LDG G + + + +F + ++ + +R ++ + +E Sbjct: 1 MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59 Query: 57 VAYTGS-KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114 +G + +V K GRAR V Q G A P L K R LA+R AL Sbjct: 60 SFGSGRGQAHVPKLDGRAR----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSAL 115 Query: 115 SDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL------------- 148 + ++ + +V+ + KT+ +V+ ALD+ Sbjct: 116 AATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIK 175 Query: 149 --------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191 ++ L + + AARN+ ++ +N D+ + Sbjct: 176 AGQGSARGRKYRRPASILFVTSDEPST----AARNLAGADVATASEVNTEDLAPGGAPGR 231 Query: 192 L-VLSKSAIEALEDR 205 L V ++SA+ + +R Sbjct: 232 LTVFTESALAEVAER 246 >gi|213646525|ref|ZP_03376578.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 72 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194 KTK L + + + L + LII G +LD N LAARN+ +++ GI+ ++ K+V+ Sbjct: 1 KTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVM 59 Query: 195 SKSAIEALEDRF 206 + A++ +E+ Sbjct: 60 TADAVKQVEEML 71 >gi|257053360|ref|YP_003131193.1| 50S ribosomal protein L4P [Halorhabdus utahensis DSM 12940] gi|256692123|gb|ACV12460.1| ribosomal protein L4/L1e [Halorhabdus utahensis DSM 12940] Length = 247 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 89/261 (34%), Gaps = 71/261 (27%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56 ++ ++ +LDG+ I + + +F + ++ + ++ + + +E Sbjct: 1 MQATLHDLDGDAADEIELPD-VFETPYRPDLIKNAVLAAQANRKQDHGADEYAGMRTPAE 59 Query: 57 VAYTGSKMYVQKGTGRARH-----SSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLAL 110 +G G+A S+ V Q GG +A P AL K R LA Sbjct: 60 SQGSGR--------GQAHVPQQDGRSRRVPQTVGGRRAHPPKAEADPAPALNDKERKLAT 111 Query: 111 RHALSDKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDL------- 148 R A++ + ++V D+ KT+ +V AL + Sbjct: 112 RSAIAATADAELVDARGHAFDDETDLPLVVSDDFE-DLVKTQAVVDVLEALGVDADIERA 170 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 + L + + AARN+ ++ + +N D+ Sbjct: 171 DDRTVRAGQGTTRGRKYRTPKSVLFVTSEEPS----KAARNLAGADVTTAREVNAEDLAP 226 Query: 188 --RCSKLVL-SKSAIEALEDR 205 +L L ++SAI + DR Sbjct: 227 GTDAGRLTLWTESAIAEVADR 247 >gi|261885690|ref|ZP_06009729.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 119 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150 KK + LAL AL+DK + + +DN+ KTK ++ L + + Sbjct: 5 PKNNRHYDQKANKKQKRLALEFALNDKGANGKLYAVDNIQISSGKTKDAISISNKLGVRD 64 Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 ALII +LD LA +N+ N ++ +N Y + S ++ K+A++++ Sbjct: 65 ALII-KNELDAKTLLAIKNLANCYVIDASEVNAYLVSVYSAVIAEKAALQSI 115 >gi|149020532|gb|EDL78337.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_c [Rattus norvegicus] Length = 157 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56 S+R + E G+ + D+FA P+ IL +V WQ KRI +K+K R+E Sbjct: 68 SLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAE 119 >gi|294496016|ref|YP_003542509.1| 50S ribosomal protein L4P [Methanohalophilus mahii DSM 5219] gi|292667015|gb|ADE36864.1| LSU ribosomal protein L4P [Methanohalophilus mahii DSM 5219] Length = 253 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 64/261 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSE 56 M+ ++ ++ G KG I++ + +F + ++ R + ++ S Sbjct: 1 MVTANILDISGNSKGEITLPD-VFEEIYRPDLIKRTVLSSQSKRYQPYGPKMYAGMETSA 59 Query: 57 VAYTGSKMYVQ-----KGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLAL 110 V++ + Q G+ AR Q GG + P P + KK + LA+ Sbjct: 60 VSWGSGRGVAQIPRLVNGSRVARV-----PQAVGGRRTHPPKPEADRTEKVNKKEKRLAV 114 Query: 111 RHALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 R A++ + + +V ++ + KT ++ + Sbjct: 115 RSAIAATINAELVKGRGHVCDSSLPIVAEDALQDVEKTAEVIKFLKTAGAYDDVLRAKDS 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ G + +ARN+ +++ V + ++L Sbjct: 175 RSIRAGKGKMRGRKYKHKKSVLIVAGSESP--IFRSARNLSGVDVTTVDSLYT-ELLAPG 231 Query: 188 -RCSKL-VLSKSAIEALEDRF 206 + +L V ++SAI +LED F Sbjct: 232 AKAGRLTVWTESAISSLEDMF 252 >gi|284162459|ref|YP_003401082.1| ribosomal protein L4/L1e [Archaeoglobus profundus DSM 5631] gi|284012456|gb|ADB58409.1| ribosomal protein L4/L1e [Archaeoglobus profundus DSM 5631] Length = 252 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 62/252 (24%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V NL GE I + +F + + I+ R + +R + + V Y Sbjct: 4 KVLNLKGEIVEEIEL-PKVFETEFRPDIIKRAVLAIQSHRRQPY-GTNPLAGVDYAWENW 61 Query: 65 YVQKGTGRARH-----SSKS--VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116 G G AR S++ V Q GG +A P + KK + AL A++ Sbjct: 62 GP--GYGYARVPRWKIGSRAVVVPQAVGGRRAHPPKVQKKWAEKINKKEKRKALMSAIAA 119 Query: 117 KFC-----------SNDI--MVIDNLVSKECKTKYLVTRFRALDL--------------- 148 ++ +V+D++ S + KTK + F+A+ + Sbjct: 120 TANPELVKARNHVFEGELPKIVVDDIESIK-KTKEVAEIFKAIGVYADVERAKETKRVRA 178 Query: 149 -------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----CSK 191 + L++ G D AA+N+P ++ + V+ +NV ++L + Sbjct: 179 GKGKMRGRRYVMKRSVLLVVG--KDDGVIKAAKNLPGVDAVLVKDLNV-ELLAPGCVAGR 235 Query: 192 L-VLSKSAIEAL 202 L V +KSAIE L Sbjct: 236 LTVWTKSAIEYL 247 >gi|304314254|ref|YP_003849401.1| 50S ribosomal protein L1e [Methanothermobacter marburgensis str. Marburg] gi|302587713|gb|ADL58088.1| 50S ribosomal protein L1e [Methanothermobacter marburgensis str. Marburg] Length = 254 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 70/265 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEV 57 +++ V +L+GE + + E IF + + ++ R + + K S Sbjct: 1 MKIKVYSLEGEAIDEMELPE-IFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAK 59 Query: 58 AYTGSKMYVQKGTGRA-----RHSSKSV--SQFRGGGKAFGPVPIIGVH-ALPKKVRSLA 109 +Y G G A ++ S++ Q GG +A P P H + +K R LA Sbjct: 60 SYGA-------GRGVAMVPRIKNGSRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLA 112 Query: 110 LRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL------- 148 +R A++ + + +V+D+ +S+ +T FR L + Sbjct: 113 IRSAVAATAMRDLVEARGHRIENVPQVPLVVDDELSRIKRTADTREVFRKLGIMDDIVRA 172 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 LI+ G D+ L ARN P ++++ V+ +N ++L Sbjct: 173 KEGKKIRAGKGKMRGRKYRTPKGPLIVVGD--DKGIALGARNHPGVDVVTVENLNA-ELL 229 Query: 188 RCSK-----LVLSKSAIEALEDRFK 207 V ++SAIE LE F+ Sbjct: 230 APGTHPGRLTVFTRSAIEKLEGLFQ 254 >gi|298674801|ref|YP_003726551.1| 50S ribosomal protein L4P [Methanohalobium evestigatum Z-7303] gi|298287789|gb|ADI73755.1| 50S ribosomal protein L4P [Methanohalobium evestigatum Z-7303] Length = 253 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 93/262 (35%), Gaps = 64/262 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSE 56 M +++V +L G K I + +F + ++ + + + S Sbjct: 1 MSKVNVIDLSGNVKSEIDL-PQVFNESLRPDLIKKAVLSSQANRLQPYGPYARAGLNTSA 59 Query: 57 VAYTGSK-----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLAL 110 V++ + + + AR Q GG +A P P + KK + LA+ Sbjct: 60 VSWGSGRGVAMVPRLANSSRAARV-----PQSVGGRRAHPPKPETDRTEKINKKEKKLAI 114 Query: 111 RHALSD-----------KFCSNDIMVIDNLVSKE-CKTKYLVTRFRALDL---------- 148 R A++ ++ V+ + + KTK +V F+ L Sbjct: 115 RSAIAATTNPELAKKRGHVFDVELPVVADDELENLTKTKDVVNFFKTAGLYKDVLRAKEG 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ + + AARN+P + + + +N ++L Sbjct: 175 KHVRAGKGKSRGRKYRQKKSVLIVVSD--NNSVIKAARNLPGVEVATIGSLNA-ELLAPG 231 Query: 188 -RCSKL-VLSKSAIEALEDRFK 207 +L V ++SAI +LE ++ Sbjct: 232 THAGRLTVWTESAISSLEGMYR 253 >gi|15678034|ref|NP_275148.1| 50S ribosomal protein L4P [Methanothermobacter thermautotrophicus str. Delta H] gi|3122746|sp|O26111|RL4_METTH RecName: Full=50S ribosomal protein L4P gi|2621050|gb|AAB84523.1| ribosomal protein L4 (E.coli ) [Methanothermobacter thermautotrophicus str. Delta H] Length = 254 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 100/265 (37%), Gaps = 70/265 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEV 57 +++ V +L+GE + + E IF + + ++ R + + K S Sbjct: 1 MKIKVYSLEGEAIDEMELPE-IFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQ 59 Query: 58 AYTGSKMYVQKGTGRA-----RHSSKSV--SQFRGGGKAFGPVPIIGVH-ALPKKVRSLA 109 +Y G G A ++ S++ Q GG +A P P H + +K R LA Sbjct: 60 SYGA-------GRGVAMVPRIKNGSRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLA 112 Query: 110 LRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL------- 148 +R A++ + + +V+D+ +S +T FR L + Sbjct: 113 IRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRA 172 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 LI+ G D+ ARN P ++++ V+ +N ++L Sbjct: 173 REGKKIRAGKGKMRGRKYRTPRGPLIVVGD--DKGITRGARNHPGVDVVRVENLNA-ELL 229 Query: 188 RCSK-----LVLSKSAIEALEDRFK 207 V ++SAIE L++ F+ Sbjct: 230 APGTHPGRLTVFTRSAIEKLDELFQ 254 >gi|20093852|ref|NP_613699.1| 50S ribosomal protein L4P [Methanopyrus kandleri AV19] gi|46396647|sp|Q8TY91|RL4_METKA RecName: Full=50S ribosomal protein L4P gi|19886781|gb|AAM01629.1| Ribosomal protein L4 [Methanopyrus kandleri AV19] Length = 260 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 69/266 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRSE 56 +E V NL+GE+ + + F ++ ++ R + +R G + + +E Sbjct: 1 MEAPVFNLEGEEVDTVEL-PSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAE 59 Query: 57 VAYTGS--------KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRS 107 G K GRA V+Q GG KA P P + +K R Sbjct: 60 SWGAGHGVAMVPRVKGRRHPAAGRA----ARVAQAVGGQKAHAPTPEKDWTQRVNRKERR 115 Query: 108 LALRHALSDKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDL---- 148 ALR AL+ ++V+D L S K + + F+++ L Sbjct: 116 AALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLN-KAREVREFFKSVGLWADV 174 Query: 149 ------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 + LI+ D +L ARN P ++++ + V Sbjct: 175 ERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDE--DEGIKLGARNHPGVDVVEAMHLGVE 232 Query: 185 DI---LRCSKL-VLSKSAIEALEDRF 206 + +L V + A+E LE+R Sbjct: 233 HLAPGAHPGRLTVFTPGALEVLEERL 258 >gi|2425177|dbj|BAA22271.1| ribosomal protein L4 [Halobacterium salinarum] Length = 248 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 62/257 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++++VR+LDG+D G + + +F + ++ R + + + +E Sbjct: 1 MQVTVRDLDGDDAGTLDL-PRVFETNVRPDLVNRAVLAAQANRTQEYGADEYAGLRTTAE 59 Query: 57 VAYTGSKM-YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL 114 +G M +V K TGR R GG KA P + K R LA+R AL Sbjct: 60 SQGSGRGMAHVPKQTGRVR----RAPDSFGGRKAHPPKAEKDRSLDVNDKERQLAVRSAL 115 Query: 115 -------SDKFCSND--------IMVIDNLVSKECKTKYLVTRFRALDL----------- 148 S+ ++ ++V D+ KT+ +V+ AL + Sbjct: 116 LATADHDSELARGHNFDDDVEFPLVVSDDFE-DLVKTQDVVSLLEALGVHADIERADEAA 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--RC 189 ++ L + + + ARN+ +++ + +N D+ Sbjct: 175 TVRAGQGELRGRKYQEPTSILFVTASESGPST---ARNLAGVDVASGREVNAEDLAPGEP 231 Query: 190 SKL-VLSKSAIEALEDR 205 +L V ++SA+E + R Sbjct: 232 GRLTVWTESAVEEVAQR 248 >gi|147919333|ref|YP_686931.1| 50S ribosomal protein L4P [uncultured methanogenic archaeon RC-I] gi|110622327|emb|CAJ37605.1| 50S ribosomal protein L4P [uncultured methanogenic archaeon RC-I] Length = 253 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 54/230 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +E+++ + G+ I+V +F + + I+ + + + + ++ Sbjct: 1 MEVTILSKSGKK-SAITV-PAVFNEEYRPDIIKKAVLAAQANRLQPYGPDRTAGTLSSAK 58 Query: 62 SKMYVQKGTGRARH-------SSKSV--SQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + G+GR S++ RGG + GP P I + K R A+R Sbjct: 59 KHSW---GSGRGAAQVPRLANGSRAAVVPHARGGRASHGPNPLRIYTEKINDKERIKAIR 115 Query: 112 HALSD-------KFC----SNDI-MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ K + +V+D+ + KT ++ AL Sbjct: 116 SAVAATTNPELVKARGYKYEGALPVVVDSEIESLKKTSEVMELLTALGFAADLARSKQKT 175 Query: 149 ---------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 L+I + D +LAARNIP +++ + +NV Sbjct: 176 VRAGKGKMRGRQYKKKVGLLIVIAE-DNGIKLAARNIPGVDVATLDELNV 224 >gi|154333576|ref|XP_001563045.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060054|emb|CAM42012.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 416 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 59/255 (23%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQ-----QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V +L + + IF L P+ + + ++R Q++ + E+ Sbjct: 73 PVFDLANKVSHTRELDPFIFGLYPETEEMAKNLSYWLVRCQNFSSKWDYENR----EIWR 128 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G AR + G + P +P K S + R ++ Sbjct: 129 KAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKP--WNMLMPTMDVKTWSKSNRMLVTL 186 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + +++ L E + + R + AL +DG + DR F Sbjct: 187 KMLQGRLQIVERLTLPEPTQEAYLELCRTMGWDVRHKGGGALFMDGGSRLTPSSEYDRAF 246 Query: 164 QLAA----RN------------------IPNINL---------LPVQGINVYDILRCSKL 192 + RN + +P+ N YD L L Sbjct: 247 FFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKVRTKGPKGQKNPIPINRFNAYDALTHDTL 306 Query: 193 VLSKSAIEALE-DRF 206 ++++ A+ LE + + Sbjct: 307 IITEGALMQLEDEMY 321 >gi|84489707|ref|YP_447939.1| 50S ribosomal protein L4P [Methanosphaera stadtmanae DSM 3091] gi|109893604|sp|Q2NFV7|RL4_METST RecName: Full=50S ribosomal protein L4P gi|84373026|gb|ABC57296.1| 50S ribosomal protein L1e [Methanosphaera stadtmanae DSM 3091] Length = 259 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 64/258 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRS 55 M +++V +L G+ I + E IF + + ++ R + + G + + + Sbjct: 1 MAKINVYSLKGDITEEIELPE-IFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTA 59 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII-GVHALPKKVRSLALR 111 E +G + KG+ +A V Q GG KA P + KK R+LA+R Sbjct: 60 ESFGSGRGAAMVPRVKGSSKA----AFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIR 115 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + VID+ + TK F+ L + Sbjct: 116 SAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKK 175 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 L++ G DR L ARN ++++ V IN ++L Sbjct: 176 GRKIKSGKGKLRGRKYRTPKGPLVVVGN--DRGISLGARNHAGVDVVEVNNINA-ELLAP 232 Query: 188 --RCSKL-VLSKSAIEAL 202 +L + +KSAIE L Sbjct: 233 GTHAGRLTIYTKSAIEKL 250 >gi|315425681|dbj|BAJ47338.1| large subunit ribosomal protein L4e [Candidatus Caldiarchaeum subterraneum] gi|315427563|dbj|BAJ49162.1| large subunit ribosomal protein L4e [Candidatus Caldiarchaeum subterraneum] Length = 272 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 92/266 (34%), Gaps = 70/266 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 ++V NL+GE I++ IF+ ++ +++R + + +G Sbjct: 16 TVNVYNLEGEAAETITL-PSIFSAPLREDLVSRAYI-HLA-----THSLQPKGASKMSGH 68 Query: 63 K----MYVQKGTGRARHSSKS---VSQFRGGGKA---------FGPVPIIGVHA-LPKKV 105 K + G G AR S ++ GG P P +H + KK Sbjct: 69 KHSIESWG-PGFGIARISRIKGRGTPKYGAGGMVPSAVGGRPTHPPTPEKKIHKQINKKE 127 Query: 106 RSLA-------LRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNA 151 A K + I +++D+ + KT + L L + Sbjct: 128 LRNALLAALAFTASPQHVKTRGHRITEQTLLPIIVDDGLEALSKTAEVRRVLIKLGLGDE 187 Query: 152 L--------------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 L +I DR AA NIP + ++ + ++V Sbjct: 188 LKRCGVKKVRAGKGKMRGRRYKRRKGPLIVVA-ADRGVGKAASNIPGVEVVTAKDLSVLH 246 Query: 186 I---LRCSKL-VLSKSAIEALEDRFK 207 + + +L + +KSA++ALE+R K Sbjct: 247 LAPGAKPGRLTLFTKSALKALEERLK 272 >gi|20089943|ref|NP_616018.1| 50S ribosomal protein L4P [Methanosarcina acetivorans C2A] gi|46396645|sp|Q8TRU6|RL4_METAC RecName: Full=50S ribosomal protein L4P gi|19914904|gb|AAM04498.1| ribosomal protein L4 [Methanosarcina acetivorans C2A] Length = 253 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 70/265 (26%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-------SKSKG 53 M +L G+ G + + +F + ++ + + + ++ Sbjct: 1 MATAKTIDLTGKAVGEVEL-PAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSA 59 Query: 54 RSEVAYTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSL 108 R +G + + AR +GG +A P P + K R Sbjct: 60 RG--WGSGRGVSHVPRLVNSSRAARV-----PHAKGGRRAHPPKPEADRSEKVNTKERRY 112 Query: 109 ALRHALSDKF-------------CSNDIMVIDNLVSKECKTKYLVTRFRALDL------- 148 A+R A++ I+ +++L S E +TK ++ A L Sbjct: 113 AIRSAIAATTDPTLVSLRGHIFEAELPIVAVNDLESLE-RTKQVIEFLEAAGLYEDVLRA 171 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + LI+ G AARN+ ++++ V +N ++L Sbjct: 172 KYGRHIRAGRGKLRGRKYKHKKSVLIVAGENTP--ILKAARNLSGVDVVTVDSLNA-ELL 228 Query: 188 ----RCSKL-VLSKSAIEALEDRFK 207 +L V ++SAI LE F+ Sbjct: 229 APGTHAGRLTVWTESAIGKLEGAFQ 253 >gi|41614941|ref|NP_963439.1| 50S ribosomal protein L4P [Nanoarchaeum equitans Kin4-M] gi|46396577|sp|P60847|RL4_NANEQ RecName: Full=50S ribosomal protein L4P gi|40068665|gb|AAR39000.1| NEQ146 [Nanoarchaeum equitans Kin4-M] Length = 268 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 90/266 (33%), Gaps = 64/266 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS----KGRSEV 57 +E+ + NL G I + F K + ++ R KR S K S Sbjct: 1 MEVPLYNLQASQVGNIELPPQ-FNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAW 59 Query: 58 AYTGSKMYVQK-GTG-----RA---RHSS------KSVSQFRGGGKAFGPV-PIIGVHAL 101 + + G G RA RH + ++++Q G KA P + Sbjct: 60 TSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKI 119 Query: 102 PKKVRSLALRHALSD-------KFCSNDI-----MVIDNLV------------------- 130 KK R LA+R AL+ K + I +V+D L Sbjct: 120 NKKERRLAIRSALAATKELDLVKARGHIIDKPVPIVVDGLEQLRKTKEIQQLLLKLGLEK 179 Query: 131 ----SKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 E K + + R +I + A NIP +++ V +NV Sbjct: 180 ELERVYEIKRRAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNV- 238 Query: 185 DILRCSK-----LVLSKSAIEALEDR 205 ++L L++SK A+E L +R Sbjct: 239 ELLAPGAKPGRLLIISKDALETLRER 264 >gi|322497320|emb|CBZ32396.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 436 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 59/255 (23%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V +L + IF + + + ++R Q++ + E+ Sbjct: 93 PVFDLSNNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYENR----EIWR 148 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G AR + G ++ P +P K S + R ++ Sbjct: 149 KAKKNWPNTGMGMARVGDRKNHAHPWGAQSKPVKP--WNMLMPTMDVKTWSKSNRMLVTL 206 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + +++ L E + + R + AL +DG + DR F Sbjct: 207 KMLQGKLQIVERLTLPEPTQEAYLQLCRTMGWDVRHTGGGALFMDGGSRLTPSSEYDRAF 266 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD L L Sbjct: 267 FFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDALTHDTL 326 Query: 193 VLSKSAIEALE-DRF 206 ++++ A+ LE + + Sbjct: 327 IITEGALMQLEDEMY 341 >gi|327400871|ref|YP_004341710.1| 50S ribosomal protein L4P [Archaeoglobus veneficus SNP6] gi|327316379|gb|AEA46995.1| 50S ribosomal protein L4P [Archaeoglobus veneficus SNP6] Length = 252 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 90/254 (35%), Gaps = 58/254 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V NL+GE I + +F + + I+ + + +R + S + Y Sbjct: 1 MKANVLNLNGEVVEEIEL-PVVFKEELRPDIIRKAVHAIQSHRRQPYGPNP-LSGINYAA 58 Query: 62 SKMYVQKGTGRARH-----SSK--SVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 G G AR S+ V Q G +A P + +K ALR A Sbjct: 59 ENWGP--GHGYARVPRLKTGSRAVKVPQAVKGRRAHPPKVQKKWEEKINRKEMRKALRSA 116 Query: 114 LSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL------------ 148 ++ + + +V+D+ KTK + F+A+ + Sbjct: 117 IAATAIAEVVKQRNHVFDGDVPKIVVDDFEGLS-KTKEVAEVFKAIGVYSDVVRAAERKR 175 Query: 149 --------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK--- 191 ++ + AARN+P ++++ + +NV ++L Sbjct: 176 VRAGKGKMRGRRYIGKKSVLVVVSKPCSVMNAARNLPGVDVVLAKDLNV-ELLAPGTHPG 234 Query: 192 --LVLSKSAIEALE 203 V +KSA+ LE Sbjct: 235 RLTVWTKSALNVLE 248 >gi|322489327|emb|CBZ24587.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 436 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 59/255 (23%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V +L + IF + + + ++R Q++ + E+ Sbjct: 93 PVFDLANNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYENR----EIWR 148 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G AR + G + P +P K S + R ++ Sbjct: 149 KAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKP--WNMLMPTMDVKTWSKSNRMLVTL 206 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + +++ L E + + R + AL +DG + DR F Sbjct: 207 KMLQGKLQIVERLTLPEPTQEAYLQLCRTMGWDVRHKGGGALFMDGGSRLTPSSEYDRAF 266 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD L L Sbjct: 267 FFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDALTHDTL 326 Query: 193 VLSKSAIEALE-DRF 206 ++++ A+ LE + + Sbjct: 327 IITEGALMQLEDEMY 341 >gi|240104059|ref|YP_002960368.1| 50S ribosomal protein L4P [Thermococcus gammatolerans EJ3] gi|259491577|sp|C5A285|RL4_THEGJ RecName: Full=50S ribosomal protein L4P gi|239911613|gb|ACS34504.1| LSU ribosomal protein L4P (rpl4P) [Thermococcus gammatolerans EJ3] Length = 255 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 92/262 (35%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL+GE I + +F+ + ++ R + + +GR +A Sbjct: 1 MKVKVFNLEGEPVEEIEL-PKVFSTPFRPDLIRRAVIASWTHRIQ----PQGRDPLAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQF--------RGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR RGG + P I + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERIKTPPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIM 115 Query: 112 HALSDKFCSN---------------DIMVIDNL--VSKECKTKYLVTRFRALD------- 147 A++ + ++V+D+L V K +T+ + + D Sbjct: 116 SAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKR 175 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 LI+ + ARN P ++++ V + V ++L Sbjct: 176 NTKIRAGKGKMRGRRYKKAKGPLIVVA--KNEGIVQGARNHPGVDVVTVDNLGV-ELLAP 232 Query: 188 --RCSKLVL-SKSAIEALEDRF 206 +L + +K AIE L++ + Sbjct: 233 GTHPGRLTIWTKGAIERLKEIY 254 >gi|146080032|ref|XP_001463933.1| hypothetical protein [Leishmania infantum JPCM5] gi|134068021|emb|CAM66307.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 436 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 59/255 (23%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V +L + IF + + + ++R Q++ + E+ Sbjct: 93 PVFDLSNNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYENR----EIWR 148 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G AR + G ++ P +P K S + R ++ Sbjct: 149 KAKKNWPNTGMGMARVGDRKNHAHPWGAQSKPVKP--WNLLMPTMDVKTWSKSNRMLVTL 206 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + +++ L E + + R + AL +DG + DR F Sbjct: 207 KMLQGKLQIVERLTLPEPTQEAYLQLCRTMGWDVRHTGGGALFMDGGSRLTPSSEYDRAF 266 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD L L Sbjct: 267 FFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDALTHDTL 326 Query: 193 VLSKSAIEALE-DRF 206 ++++ A+ LE + + Sbjct: 327 IITEGALMQLEDEMY 341 >gi|71662196|ref|XP_818108.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883340|gb|EAN96257.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 459 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 87/253 (34%), Gaps = 58/253 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 + V NL+ E + +F + + + ++R Q++ + + R E+ Sbjct: 115 VPVFNLNNEVTHTRELDPFVFGMYPETEELSKNLTYWLVRCQNYASKWDY---ETR-EIW 170 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALS 115 K + G G R S++ Q+ GG+ P +P K S + R L+ Sbjct: 171 RKAKKNWPNTGMGMPRVSNRKNHQYLWGGRTKPSKP--WNMLMPTMDVKTWSKSNRMMLT 228 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG------------- 156 K + V++ L E + + R + L +DG Sbjct: 229 LKMLQGRLQVVERLTLSEPTQECYLGLCRTMSWDVRHTGGGVLFMDGGSRITPSIEFDRS 288 Query: 157 ---------------------CQLDRNFQLAARNIPN----INLLPVQGINVYDILRCSK 191 Q D N + + + N +P+ NV+D ++ + Sbjct: 289 FFFGSFFNGRNKVVRPTLLCDEQYDYNKTASKQRMKGPKGPKNPIPINRFNVFDAMQHER 348 Query: 192 LVLSKSAIEALED 204 LV+++ AI LE+ Sbjct: 349 LVITEGAIMQLEE 361 >gi|254172972|ref|ZP_04879646.1| ribosomal protein, L4/L1 family [Thermococcus sp. AM4] gi|214033128|gb|EEB73956.1| ribosomal protein, L4/L1 family [Thermococcus sp. AM4] Length = 255 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 88/262 (33%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL+GE I + +F+ + ++ R + + +GR +A Sbjct: 1 MKVKVFNLEGEPVEEIEL-PKVFSTPFRPDLIRRAVIASWTHRIQ----PQGRDPLAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQF--------RGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR RGG + P I + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERIKTPPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIM 115 Query: 112 HALSDKFCSN---------------DIMVIDNLV--SKECKTKYLVTRFRALD------- 147 A++ + ++V+D+L K +T+ + + D Sbjct: 116 SAIAATANPDLVKARGHVTDNVPAFPLVVVDDLEKVFKTAQTREIFKKLGIWDDIERAKR 175 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 LI+ + ARN P ++++ V + V ++L Sbjct: 176 NTKIRAGKGKMRGRRYKKAKGPLIVVA--KNEGIVQGARNHPGVDVVTVDNLGV-ELLAP 232 Query: 190 SK-----LVLSKSAIEALEDRF 206 V +K AIE L + + Sbjct: 233 GTHPGRLTVWTKGAIERLREIY 254 >gi|222480856|ref|YP_002567093.1| ribosomal protein L4/L1e [Halorubrum lacusprofundi ATCC 49239] gi|254803738|sp|B9LSS6|RL4_HALLT RecName: Full=50S ribosomal protein L4P gi|222453758|gb|ACM58023.1| ribosomal protein L4/L1e [Halorubrum lacusprofundi ATCC 49239] Length = 248 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 87/257 (33%), Gaps = 62/257 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 + +V +LDG D G + + IF + ++ R + ++ + +E Sbjct: 1 MNATVHDLDGGDAGSVEL-PAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAE 59 Query: 57 VAYTGSKMYVQKGT-GRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL 114 +G + + AR V G A P +L K R LA+R A+ Sbjct: 60 SFGSGRGLAHIPRSENVAR----RVPNAVSGRAAHPPKAEKDQTKSLNDKERQLAIRSAI 115 Query: 115 SDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL------------ 148 + + + +V+ + KT+ + A+ Sbjct: 116 AATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRS 175 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRC 189 + L++ + R AARN+ +++ + +N D+ Sbjct: 176 VRAGRGKTRGRKYSQPKSVLVVTSEEPSR----AARNLSGVDVATAREVNAEDLAPGAHP 231 Query: 190 SKLVL-SKSAIEALEDR 205 +L L ++SAIE + DR Sbjct: 232 GRLTLWTESAIEEVADR 248 >gi|157865790|ref|XP_001681602.1| hypothetical protein [Leishmania major strain Friedlin] gi|68124899|emb|CAJ03077.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 436 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 59/255 (23%) Query: 5 SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 V +L + IF + + + ++R Q++ + E+ Sbjct: 93 PVFDLANNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYENR----EIWR 148 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALSD 116 K + G G AR + G + P +P K S + R ++ Sbjct: 149 KAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKP--WNLLMPTMDVKTWSKSNRMLVTL 206 Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDG-------CQLDRNF 163 K + +++ L E + + R + AL +DG + DR F Sbjct: 207 KMLQGKLQIVERLTLPEPTQEAYLQLCRTMGWDVRHKGGGALFMDGGSRLTPSSEYDRAF 266 Query: 164 QLAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKL 192 + RN P + N +P+ N YD L L Sbjct: 267 FFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDALTHDTL 326 Query: 193 VLSKSAIEALE-DRF 206 ++++ A+ LE + + Sbjct: 327 IITEGALLQLEDEMY 341 >gi|148642821|ref|YP_001273334.1| 50S ribosomal protein L4P [Methanobrevibacter smithii ATCC 35061] gi|222445052|ref|ZP_03607567.1| hypothetical protein METSMIALI_00669 [Methanobrevibacter smithii DSM 2375] gi|261350379|ref|ZP_05975796.1| 50S ribosomal protein L4P [Methanobrevibacter smithii DSM 2374] gi|226730693|sp|A5UL88|RL4_METS3 RecName: Full=50S ribosomal protein L4P gi|148551838|gb|ABQ86966.1| ribosomal protein L1e [Methanobrevibacter smithii ATCC 35061] gi|222434617|gb|EEE41782.1| hypothetical protein METSMIALI_00669 [Methanobrevibacter smithii DSM 2375] gi|288861162|gb|EFC93460.1| 50S ribosomal protein L4P [Methanobrevibacter smithii DSM 2374] Length = 254 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 66/258 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +++GE K I + IF + + ++ R + + + T Sbjct: 1 MKANVYSMEGEVKEEIEL-PAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGK--RTS 57 Query: 62 SKMYVQKGTGR--AR-----HSSKSV--SQFRGGGKAFGPV-PIIGVHALPKKVRSLALR 111 +K + G+GR AR + SK+ GG +A + K R A+R Sbjct: 58 AKGW---GSGRGTARVPRIKNGSKAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIR 114 Query: 112 HALSDKFCS----------NDI----MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ D+ +++++ + TK F+ L + Sbjct: 115 SAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKE 174 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 L++ G D +L ARN ++++ V+ +N ++L Sbjct: 175 GKRIRAGRGKTRGRKYKKVKGPLLVVGE--DNGIKLGARNHAGVDVVTVENLNA-ELLAP 231 Query: 190 SK-----LVLSKSAIEAL 202 + +KSA+E L Sbjct: 232 GTHPGRLTIFTKSAVEKL 249 >gi|288560109|ref|YP_003423595.1| ribosomal protein L4p Rpl4p [Methanobrevibacter ruminantium M1] gi|288542819|gb|ADC46703.1| ribosomal protein L4p Rpl4p [Methanobrevibacter ruminantium M1] Length = 254 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 58/254 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++++V ++ GE K I + IF + + ++ R + + + + +E Sbjct: 1 MKVNVYSIQGEVKEEIEL-PAIFNEEYRPDLIKRAVLSAQSARIQPWGNDPMAGKRTSAE 59 Query: 57 VAYTGS--KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 +G M + TG AR V Q GG KA + K R A+R A Sbjct: 60 SWGSGRGAAMVPRIKTG-ARA--AFVPQAIGGRKAHPVRAAKNHHEKINNKERRFAIRSA 116 Query: 114 LSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALI------ 153 ++ + +++++ + KT F+AL + + +I Sbjct: 117 VAATVNEELVAGRGHRIENLEQVPVIVEDDLETVKKTSETREIFKALGVYDDVIKAKDSK 176 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RC 189 + D+ L ARN ++++ V +N ++L Sbjct: 177 KIRAGRGKTRGRKYKSGKGPLVVVSEDKGIGLGARNHAGVDVVAVDNLNA-ELLAPGTHA 235 Query: 190 SKL-VLSKSAIEAL 202 +L + +KSA+E L Sbjct: 236 GRLTIYTKSAVEKL 249 >gi|116755015|ref|YP_844133.1| 50S ribosomal protein L4P [Methanosaeta thermophila PT] gi|121694875|sp|A0B9W9|RL4_METTP RecName: Full=50S ribosomal protein L4P gi|116666466|gb|ABK15493.1| LSU ribosomal protein L4P [Methanosaeta thermophila PT] Length = 251 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 56/256 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-------SKSKGR 54 + + ++ G G I + IF + + ++ R + + + R Sbjct: 1 MNAKIIDISGNPVGEIVL-PAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSAR 59 Query: 55 SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 S G + TGR R ++ RGG + PVP + + +K R A+R A Sbjct: 60 SWGPGHGVSRVPRIVTGR-RAAAV--PMARGGRASHPPVPSKVLSEKINEKERIKAIRSA 116 Query: 114 LSDKFC-----------SNDI-MVIDNLVSKECKTKYLVTRFRALDLSNAL--------- 152 ++ S ++ +V+ + KT L A L + + Sbjct: 117 VAATAKPDIVAARGHLFSGELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKV 176 Query: 153 -----------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSK 191 I+ D AARN+P ++ + +N ++L + Sbjct: 177 RAGKGKIRGRRFRQPRSILIVAAADNGIGRAARNLPGVDFVTADRLNA-ELLAPGTHAGR 235 Query: 192 L-VLSKSAIEALEDRF 206 L V S+ +++ LE+R Sbjct: 236 LTVWSEPSLKVLEERL 251 >gi|213612410|ref|ZP_03370236.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 58 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + LII G +LD N LAARN+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 1 EDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 57 >gi|86152290|ref|ZP_01070501.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 260.94] gi|85840779|gb|EAQ58030.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 260.94] Length = 98 Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 +AL AL+DK + D+L + KTK T + L + +ALI+ LD LA Sbjct: 1 MALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAY 59 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202 RN+ N ++ V +N Y + + +++ KSA+E++ Sbjct: 60 RNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESI 94 >gi|91772084|ref|YP_564776.1| 50S ribosomal protein L4P [Methanococcoides burtonii DSM 6242] gi|121691984|sp|Q12ZV0|RL4_METBU RecName: Full=50S ribosomal protein L4P gi|91711099|gb|ABE51026.1| LSU ribosomal protein L4P [Methanococcoides burtonii DSM 6242] Length = 253 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 64/261 (24%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRS 55 M ++ +L G KG I++ E +F+ + ++ + + + G + + + Sbjct: 1 MTTANIIDLSGNSKGEIALPE-VFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSA 59 Query: 56 EVAYTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLAL 110 +G + G+ AR Q GG +A P + KK + LA+ Sbjct: 60 HSWGSGRGVAQVPRISNGSRVARI-----PQAVGGRRAHPPKTETDRTEKINKKEKRLAV 114 Query: 111 RHALSD-------KFCSNDI-----MVIDNLVSKECKTKYLVTRFRALDL---------- 148 R A++ K + V D+ + K K +++ +A L Sbjct: 115 RSAIAATIDADLVKARGHKFTAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEG 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ G + AA N+P +++ V +N ++L Sbjct: 175 KHIRAGKGKRRGRKYKNRKSVLIVTGEES--LLSKAANNLPGVDVATVTALNA-ELLAPG 231 Query: 188 -RCSKL-VLSKSAIEALEDRF 206 +L V ++SAI +E F Sbjct: 232 THAGRLTVWTQSAITNMEGMF 252 >gi|325958532|ref|YP_004289998.1| 50S ribosomal protein L4P [Methanobacterium sp. AL-21] gi|325329964|gb|ADZ09026.1| 50S ribosomal protein L4P [Methanobacterium sp. AL-21] Length = 260 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 98/265 (36%), Gaps = 63/265 (23%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRS 55 M ++ V +L+GE I + E IF + ++ R + + G + + + Sbjct: 1 MEKIKVYSLEGEVVDEIELPE-IFTEVYRPDLIKRAVISSQTARIQPWGTDPMAGKRTTA 59 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSV--SQFRGGGKAFGPVP-IIGVHALPKKVRSLA 109 + +G + KG+ R SK+ Q GG KA P I + +K R LA Sbjct: 60 KSFGSGRGAAMVPRVKGS-RHPAGSKAAFIPQAIGGRKAHPPKTERIIHEKINRKERRLA 118 Query: 110 LRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL------- 148 +R A++ + V+D+ + +TK F L L Sbjct: 119 IRSAVAATANREIVEARGHKIQNLDQVPFVVDDELETVKRTKDTREIFAKLGLLDDVCRA 178 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L++ G D+ L ARN ++++ V +N ++L Sbjct: 179 KAGRTIRAGRGKMRGRKYKTSKGPLLVVGE--DKGISLGARNHAGVDVVVVNHLNA-ELL 235 Query: 188 ----RCSKL-VLSKSAIEALEDRFK 207 +L + +KSA+E L + FK Sbjct: 236 APGTHPGRLTIYTKSAVEKLGELFK 260 >gi|126178515|ref|YP_001046480.1| 50S ribosomal protein L4P [Methanoculleus marisnigri JR1] gi|166234684|sp|A3CSZ8|RL4_METMJ RecName: Full=50S ribosomal protein L4P gi|125861309|gb|ABN56498.1| LSU ribosomal protein L4P [Methanoculleus marisnigri JR1] Length = 249 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 94/258 (36%), Gaps = 66/258 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRSE 56 ++ VR L GE I + E IF + + ++ R + + G + + +E Sbjct: 1 MKAQVRTLTGEIAHEIDLPE-IFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAE 59 Query: 57 VAYTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 +G ++ G+ AR Q GG A P I V + +K + ALR Sbjct: 60 SWGSGRGAAQVPRLKNGSRVARV-----PQATGGRAAHPPKVEKILVKEINRKEKRKALR 114 Query: 112 HALSD-----------KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ D+ +V ++ + +T ++ AL + Sbjct: 115 SAVAASTYPDLVRERGHLFEGDLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSR 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 + LI+ G + AARN+ ++ + V +N ++L Sbjct: 175 KVRAGRGTMRGRRYKQRKSVLIVTGGEP----LRAARNLAGVDAVAVDQLNA-ELLAPGT 229 Query: 189 -CSKLVL-SKSAIEALED 204 +L + ++SAI LE+ Sbjct: 230 QAGRLTIWTESAIRRLEE 247 >gi|312137076|ref|YP_004004413.1| lsu ribosomal protein l4p [Methanothermus fervidus DSM 2088] gi|311224795|gb|ADP77651.1| LSU ribosomal protein L4P [Methanothermus fervidus DSM 2088] Length = 255 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 61/259 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEV 57 ++ +V +LDGE + + E IF + ++ R + + K + V Sbjct: 1 MKANVYSLDGEVIEKVKLPE-IFEEHLRPDLIKRAVLSIQTARIQPWGPNKMAGKRTTAV 59 Query: 58 AYT---GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 + G M + T R V Q GG KA P P I + +K R LALR A Sbjct: 60 SRGAGYGIAMVPRIKTPPERA--AFVPQAVGGRKAHPPKPEKIYHERINRKERRLALRSA 117 Query: 114 LSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL----------- 148 ++ + +++++ +S KT+ F+ L + Sbjct: 118 IAATANKELVKQRGHRIDNVPEIPLIVEDKLSTLKKTRETREVFKKLGVMDDIIRAKKGR 177 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 LI+ DR L ARN P ++++ V+ +NV ++L Sbjct: 178 KIRSGKGKMRGRKYRKPKGPLIVVDE--DRGIVLGARNHPGVDIVTVENLNV-ELLAPGT 234 Query: 192 -----LVLSKSAIEALEDR 205 + +KSA+E LE+ Sbjct: 235 HPGRFTIYTKSALEKLEEM 253 >gi|77024939|gb|ABA61366.1| ribosomal protein L4 [uncultured marine group II euryarchaeote HF70_59C08] Length = 287 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 74/267 (27%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAY-TG 61 +++ D +++ F + + ++ R + +R K R+ Sbjct: 25 YSIEASDGKNVNLPSA-FGSEFRPDLIRRAVHASRANRRQSYGHREHGGK-RAPQPGMKH 82 Query: 62 SKMYVQKGTG--------RARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 S + KG G AR + RGG +A GP+ L K + A Sbjct: 83 SVEWWGKGRGVSRIMRKSGARTGA-QNPHTRGGRRAHGPMVLKDWSQKLNSKEANAARDS 141 Query: 113 ALSDKFCSNDI--------------MVI-------DNLVSK----ECKTKYLVTRFRALD 147 A++ S + +V+ +N + E TK + ++ Sbjct: 142 AIAATADSEKVAARGHKFSDSVRFPIVLGGYSEDGENFDIESLPLEKATKKFIAMMESIG 201 Query: 148 LSNAL---------------------------IIDGCQLDRNFQLAARNIPNINLLPVQG 180 L + L ++ Q D AARN+P ++++ + Sbjct: 202 LGDDLTRANDGRNIRAGKGKMRGRRRRTPRSILLVVAQRDA-LAKAARNVPGVDVVVAKD 260 Query: 181 INVYDIL---RCSKL-VLSKSAIEALE 203 + D+ +L V +K+AIEALE Sbjct: 261 LCAEDLAPGGDAGRLTVWTKAAIEALE 287 >gi|212223212|ref|YP_002306448.1| 50S ribosomal protein L4P [Thermococcus onnurineus NA1] gi|226731435|sp|B6YSL4|RL4_THEON RecName: Full=50S ribosomal protein L4P gi|212008169|gb|ACJ15551.1| LSU ribosomal protein L4P [Thermococcus onnurineus NA1] Length = 255 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 92/262 (35%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL+GE I + +FA + ++ R + + +GR +A Sbjct: 1 MKVKVFNLEGEPVEEIELPN-VFATPFRPDLIRRAVIASWTHRIQ----PQGRDPLAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKS-VSQF-------RGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR +F RGG + P I + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERIKTSPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIM 115 Query: 112 HALSDKFC---------------SNDIMVIDNLV--SKECKTKYLVTRFRALD------- 147 A++ ++V+++L K +T+ + + D Sbjct: 116 SAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKK 175 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 LI+ + ARN P ++++ V+ + V ++L Sbjct: 176 NTKIRAGKGKMRGRRYKKAKGPLIVVA--KNEGIVQGARNHPGVDVVTVENLGV-ELLAP 232 Query: 188 --RCSKLVL-SKSAIEALEDRF 206 +L + +K AIE L + + Sbjct: 233 GTHPGRLTIWTKGAIERLREIY 254 >gi|110668740|ref|YP_658551.1| 50S ribosomal protein L4P [Haloquadratum walsbyi DSM 16790] gi|121687180|sp|Q18GF0|RL4_HALWD RecName: Full=50S ribosomal protein L4P gi|109626487|emb|CAJ52948.1| ribosomal protein L4.eR [Haloquadratum walsbyi DSM 16790] Length = 248 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 95/257 (36%), Gaps = 62/257 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56 +E ++ NL+G+ + + +F + ++ R + ++ + + +E Sbjct: 1 METTIHNLNGDKADTLEL-PAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAE 59 Query: 57 VAYTGSKM-YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHAL 114 +G M +V + G+AR V Q G KA P ++ K R LA + A+ Sbjct: 60 SFGSGRGMAHVPRENGQAR----RVPQAVSGRKAHPPKAEKDQSKSVNTKERKLAFQSAV 115 Query: 115 SDKFC-----------SNDI---MVIDNLVSKECKTKYLVTRFRALDL------------ 148 + ND+ +V+ + + KT+ +V +L + Sbjct: 116 AATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKS 175 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189 + L I + AARN+ +++ ++ D+ + Sbjct: 176 IRAGRGKTRGRKYRRPKSILFITSDEPS----KAARNLAGADVVTAANVSAEDLAPGTQP 231 Query: 190 SKL-VLSKSAIEALEDR 205 +L V ++SAI+ + DR Sbjct: 232 GRLTVYTESAIKEVADR 248 >gi|307354324|ref|YP_003895375.1| 50S ribosomal protein L4P [Methanoplanus petrolearius DSM 11571] gi|307157557|gb|ADN36937.1| 50S ribosomal protein L4P [Methanoplanus petrolearius DSM 11571] Length = 248 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 66/259 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRSE 56 ++ ++ +DG+D G I + +F + + ++ + + + G + K +E Sbjct: 1 MKTQIKTIDGKDAGEIEL-PVLFEEEYRPDLIKKAVISIQSMRYQPHGTNPYAGIKTSAE 59 Query: 57 VAYTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 +G ++ G+ AR Q GG A P I V + K+ + A+R Sbjct: 60 SWGSGRGVAQVPRIKNGSRVARI-----PQAVGGRAAHPPKVEKILVKKINKQEKRKAMR 114 Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ + +V + TK + RA L Sbjct: 115 SAIAATTNEELVLARGHIFEGAVPVVFEEAFEDLKSTKEVADALRAAGLYEDVVRARNSR 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 + LI+ G + A +N+ +++ V+ +NV ++L Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTGDKQ----LRAGKNLAGVDITTVEQLNV-ELLAPGT 229 Query: 189 -CSKL-VLSKSAIEALEDR 205 +L V + AI L + Sbjct: 230 QAGRLTVWTVPAINRLGEM 248 >gi|15790633|ref|NP_280457.1| 50S ribosomal protein L4P [Halobacterium sp. NRC-1] gi|169236372|ref|YP_001689572.1| 50S ribosomal protein L4P [Halobacterium salinarum R1] gi|46396658|sp|Q9HPD3|RL4_HALSA RecName: Full=50S ribosomal protein L4P gi|226730670|sp|B0R657|RL4_HALS3 RecName: Full=50S ribosomal protein L4P gi|10581160|gb|AAG19937.1| 50S ribosomal protein L4E [Halobacterium sp. NRC-1] gi|167727438|emb|CAP14226.1| ribosomal protein L4.eR [Halobacterium salinarum R1] Length = 250 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 87/260 (33%), Gaps = 66/260 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++++VR+LDG+D G + + +F + ++ R + + + +E Sbjct: 1 MQVTVRDLDGDDAGTLDL-PRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAE 59 Query: 57 VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRS----- 107 +G M G G V Q GG KA P + K R Sbjct: 60 SQGSGRGMAHVPKANGQG------ARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRA 113 Query: 108 LALRHALSDKFCSND----------IMVIDNLVSKECKTKYLVTRFRALDL--------- 148 S+ ++V D+ KT+ +V+ AL + Sbjct: 114 AVAATTDSELVADRGHNFDDDVEFPLVVSDDFE-DLVKTQDVVSLLEALGVHADIERADE 172 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI--- 186 ++ L + + + AARN+ +++ + +N D+ Sbjct: 173 GRTVRAGQGTLRGRKYQEPTSILFVTASESGPST--AARNLAGVDVATGREVNAEDLAPG 230 Query: 187 LRCSKL-VLSKSAIEALEDR 205 +L V ++SA+E + R Sbjct: 231 AEPGRLTVWTESAVEEVAQR 250 >gi|331227810|ref|XP_003326573.1| 60S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309305563|gb|EFP82154.1| 60S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 456 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 86/258 (33%), Gaps = 57/258 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++VR+ G+ I + +F + ++ + + + KR + S + +E Sbjct: 87 VNVRSTSGQSSSTIPL-PAVFTAPIRNDVVQDIHKNLAKNKRQAYAVSSKAGEQTSAESW 145 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG+ F P K R A+ A Sbjct: 146 GTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRKWHVKTNLKQRRYAIVSA 205 Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI----- 153 ++ +K ++V D + S KTK V + L + ++ Sbjct: 206 IAATAVPSLVLARGHRIEKIAEVPLVVADEVESIS-KTKEAVAILKTLKAHSDVVKVSNS 264 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D+ A RNIP + L+ V +N+ + + Sbjct: 265 RKTRAGKGKMRGRRYRQRRGPLVIYNEDKGIVRAFRNIPGVELVCVHRLNLLQLAPGGHI 324 Query: 193 ----VLSKSAIEALEDRF 206 + ++ A L++ + Sbjct: 325 GRFCIWTQGAFAQLDELY 342 >gi|288931511|ref|YP_003435571.1| 50S ribosomal protein L4P [Ferroglobus placidus DSM 10642] gi|288893759|gb|ADC65296.1| 50S ribosomal protein L4P [Ferroglobus placidus DSM 10642] Length = 251 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 92/258 (35%), Gaps = 60/258 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++ V +L GE I + F + + I+ + + +R + + E Sbjct: 1 MKAKVYSLTGEVVEEIELPAA-FNEEFRPDIIRKAVHAIQSHRRQPYGPNPLAGTDYAWE 59 Query: 57 VAYTG---SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 G +++ K RA V Q GG +A P + KK ALR Sbjct: 60 NWGPGYGYARVPRWKLGRRA----VVVPQAVGGRRAHPPKVQKKWAEKINKKEMRKALRS 115 Query: 113 ALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL--------SNA 151 AL+ + +V+D+ + + KTK ++ F+A+ + Sbjct: 116 ALAATINEEIVRARNHVFEGELPKIVVDDFENLK-KTKEIIEVFKAIGVYADVERAKERK 174 Query: 152 LIIDGCQLDR------------------NFQLAARNIPNINLLPVQGINVYDIL----RC 189 G R + AA+N+ ++++ + +NV ++L Sbjct: 175 RYRAGKGKMRGRRFKTKKSVLVVVSKVCDAMKAAKNLAGVDVVLAKDLNV-ELLAPGGHA 233 Query: 190 SKL-VLSKSAIEALEDRF 206 +L V +KSAI L +R Sbjct: 234 GRLTVYTKSAIAQLGERL 251 >gi|213581209|ref|ZP_03363035.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 55 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 I +LD N LAARN+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 2 IITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 54 >gi|193083755|gb|ACF09442.1| ribosomal protein L4 [uncultured marine group II euryarchaeote SAT1000-15-B12] Length = 292 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 76/270 (28%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAY-TG 61 ++ D +++ + +F+ + ++ I+ + +R K R+ Sbjct: 26 YFVEANDGKSVTLPD-VFSSEVREDIIRSAVLASRANRRQPYGHREHDGK-RAPQPGMKH 83 Query: 62 SKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 S + KG G +R + RGG +A GP L K R LA A Sbjct: 84 SVEWWGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKQRRLARDSA 143 Query: 114 LSDKFC-----------SNDI---MVIDNLVSK---------------ECKTKYLVTRFR 144 ++ +DI +VID V + T+ V Sbjct: 144 IAATVDTRMVAARGHRFDDDIRFPIVIDGYVESRNGSDEKYDVESLPLQYSTRKFVAMME 203 Query: 145 ALDLS---------------------------NALIIDGCQLDRNFQLAARNIPNINLLP 177 L LS ++++ D AARN+P ++++ Sbjct: 204 GLGLSADLERAKGGRNIRAGKGKMRGRRYRTPKSILVVVSNRD-GLHKAARNVPGVDVVV 262 Query: 178 VQGINVYDIL---RCSKL-VLSKSAIEALE 203 + ++ D+ +L V +K+A+EALE Sbjct: 263 AKDLSAEDLAPGGDAGRLTVWTKAAVEALE 292 >gi|323307837|gb|EGA61099.1| Yml6p [Saccharomyces cerevisiae FostersO] Length = 164 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 33/156 (21%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124 QKG+GRAR + GG+A P LP KV S+A +ALS ++ S + Sbjct: 2 PQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLF 61 Query: 125 VI--DNLVSKECKTKYLVTRFRALDLS-------------------------NALIIDGC 157 VI + + + + R ++ + L+ Sbjct: 62 VIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLFITD 121 Query: 158 QLDRNFQLAARNIP---NINLLPVQGINVYDILRCS 190 + ++ P ++++ + + V DILR Sbjct: 122 KTREGLIKSSD--PYKQKVDVIQKELVEVNDILRAQ 155 >gi|14520557|ref|NP_126032.1| 50S ribosomal protein L4P [Pyrococcus abyssi GE5] gi|13124461|sp|Q9V1T6|RL4_PYRAB RecName: Full=50S ribosomal protein L4P gi|5457773|emb|CAB49263.1| rpl4P LSU ribosomal protein L4P [Pyrococcus abyssi GE5] Length = 255 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G+ I + +F + ++ R + + +GR +A Sbjct: 1 MKVKVFDLNGQPVDEIEL-PKVFFTPFRPDLIRRAVIASWTHRIQ----PQGRDPMAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHA--------LPKKVRSLALR 111 KG G AR F + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIM 115 Query: 112 HALSDKFC---------------SNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A++ ++V+D+L K KT+ F+ L + Sbjct: 116 SAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQ-KVSKTRETREIFKKLGIWDDIERAK 174 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 LI+ G + ARN P ++++ V + V + Sbjct: 175 EKTGIRAGKGKMRGRRYKKAKGPLIVVG--KNEGIVFGARNHPGVDVVVVDNLGVEHLAP 232 Query: 188 --RCSKL-VLSKSAIEALEDRF 206 +L V + SAIE L++ + Sbjct: 233 GTHPGRLTVWTVSAIERLKEIY 254 >gi|289597192|ref|YP_003483888.1| 50S ribosomal protein L4P [Aciduliprofundum boonei T469] gi|289534979|gb|ADD09326.1| 50S ribosomal protein L4P [Aciduliprofundum boonei T469] Length = 254 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 84/256 (32%), Gaps = 62/256 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56 + ++V +DGE K I++ +F + ++ +R + + + +E Sbjct: 1 MRVNVYTVDGEVKRQITL-PKVFNYPYRPDLIKEAVRIFQLNRVQPHGVSPTAGMRRVAE 59 Query: 57 VAYTG---SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 G SKM G + GG P + + K+R LA Sbjct: 60 SWGPGHGISKMVP--RVGHTSRGAII-PSTVGGRAGHPPTTQKVWKRKMNIKMRRLAKYS 116 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 ALS + +V+++ K + + L + Sbjct: 117 ALSMTSNKVMVAKRGHKFSPDITLPVVVEDEFENISTVKEAIRVLQNLGIYEDIIRASEK 176 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---- 187 + LI+ + N RN+P ++++ + +N ++L Sbjct: 177 RIRGGKGKRRGRRYKKKKSVLIVVSNK--DNVLKGFRNLPGVDIVTPRELNA-EVLAPGT 233 Query: 188 RCSKL-VLSKSAIEAL 202 +L + ++SAI+ + Sbjct: 234 HAGRLAIFTESAIKEI 249 >gi|76156125|gb|AAX27356.2| SJCHGC04542 protein [Schistosoma japonicum] Length = 167 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKG 69 G++ + DIFA+ P+ ++ + L WQ+ + I R+E+ Y K + QK Sbjct: 96 VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELPYGTRKKPWPQKK 152 >gi|193084316|gb|ACF09975.1| ribosomal protein L4 [uncultured marine group II euryarchaeote KM3-130-D10] Length = 292 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 76/270 (28%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAY-TG 61 ++ D +++ +F+ + ++ I+ + +R K R+ Sbjct: 26 YFVEANDGKSVTLPN-VFSSEVREDIIRSAVLASRANRRQPYGHREHDGK-RAPQPGMKH 83 Query: 62 SKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 S + KG G +R + RGG +A GP L K R A A Sbjct: 84 SVEWWGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKQRRQARDSA 143 Query: 114 LSDKFC-----------SNDI---MVIDNLVSK---------------ECKTKYLVTRFR 144 ++ +DI +VID V + T+ V Sbjct: 144 IAATVDTRMVAARGHRFDDDIRFPIVIDGYVESRNGSDEKYDVESLPLQYSTRKFVAMME 203 Query: 145 ALDLS---------------------------NALIIDGCQLDRNFQLAARNIPNINLLP 177 L LS ++++ D AARN+P ++++ Sbjct: 204 GLGLSADLERAKGGRNIRAGKGKMRGRRYRTPKSILVVVSNRD-GLHKAARNVPGVDVVV 262 Query: 178 VQGINVYDIL---RCSKL-VLSKSAIEALE 203 + ++ D+ +L V +K+AIEALE Sbjct: 263 AKDLSAEDLAPGGDAGRLTVWTKAAIEALE 292 >gi|150399608|ref|YP_001323375.1| 50S ribosomal protein L4P [Methanococcus vannielii SB] gi|226730695|sp|A6UQJ1|RL4_METVS RecName: Full=50S ribosomal protein L4P gi|150012311|gb|ABR54763.1| ribosomal protein L4/L1e [Methanococcus vannielii SB] Length = 252 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 63/260 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 + + V NLDG +KG I + +F + + ++ R + + KG +A Sbjct: 1 MNVKVYNLDGSEKGAIEL-PSVFETEYRPDVIKRAVISSLTARLQ----PKGSDPLAGYR 55 Query: 60 TGSKMYVQKGTGRAR-----HSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 T +K KG G+AR + + V Q GG +A P I + +K R AL Sbjct: 56 TSAKSIG-KGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKERLKALAS 114 Query: 113 ALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 A++ + I +V++ KTK +++ F+AL L Sbjct: 115 AIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDG 174 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + L++ G D A+RN+ ++++ ++ I Sbjct: 175 IKIKAGRAKLRGRKYKKPRSVLVVVGDACD--AVAASRNLAGVDVITANDLSAIHIAPGT 232 Query: 188 RCSKLVL-SKSAIEALEDRF 206 +L L +++AIE L++RF Sbjct: 233 MAGRLTLWTENAIEKLKERF 252 >gi|289806055|ref|ZP_06536684.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 59 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +EL +++ ++VSE F + ++ +V+ + R G K R+EV +G Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56 Query: 62 SKM 64 K Sbjct: 57 KKP 59 >gi|198273719|ref|ZP_03206254.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|198249747|gb|EDY74528.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 117 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Query: 95 IIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFRALDLSN-AL 152 + KVR LA + AL+ K ++ ++ N + TK +V +L N + Sbjct: 2 RNYNLKVNAKVRLLAFKSALTIKLNEGKMLGLVANSDLETPSTKKMVNFINNANLENQKV 61 Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 ++ N + + N+ + ++V D++ + +V+++ A Sbjct: 62 LLVIADHFSNIKKSTNNLQKVTTKLWYQVSVRDLMHANVVVVAEEAF 108 >gi|150401235|ref|YP_001325001.1| 50S ribosomal protein L4P [Methanococcus aeolicus Nankai-3] gi|226730685|sp|A6UV67|RL4_META3 RecName: Full=50S ribosomal protein L4P gi|150013938|gb|ABR56389.1| ribosomal protein L4/L1e [Methanococcus aeolicus Nankai-3] Length = 252 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 98/263 (37%), Gaps = 69/263 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARV----LRWQSWRKRIGCSKSKGRSEV 57 +++ V N+DG +KG +S +F + + ++ R + K + K S Sbjct: 1 MKVKVYNMDGSEKGETELS-AVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAK 59 Query: 58 AYTGSKMYVQKGTGRAR-----HSSKS-VSQFRGGGKAFGPVPIIGVH-ALPKKVRSLAL 110 + KG GRAR + + V Q GG + P +H + KK R AL Sbjct: 60 SIG-------KGHGRARVQRTGQGAGAFVPQAVGGRRCHPPKVEKILHERVNKKERLKAL 112 Query: 111 ---------------RHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL------- 148 R + + S ++V D+ S + KTK ++ F+ L L Sbjct: 113 ASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLK-KTKEVLETFKNLGLDGDVQRA 171 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI- 186 + L++ D A++N+P ++++ + V I Sbjct: 172 KDGIKIRSGIGKLRGRKYRKPKSVLVVVSGACD--AVKASKNLPGVDVISANDLGVMHIA 229 Query: 187 --LRCSKLVL-SKSAIEALEDRF 206 +L L ++SA+E + RF Sbjct: 230 PGADSGRLTLWTESAVEEINKRF 252 >gi|301500869|ref|YP_003795281.1| ribosomal protein L4 [Chromera velia] gi|300069415|gb|ADJ66523.1| ribosomal protein L4 [Chromera velia] Length = 272 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 1 MIELSVRNLDGEDKGVISVSEDI-FALKPQ--QGIL---------ARVLRWQSWRKRIGC 48 M + S++ L + + +I + I F KP + +L + R++ + + C Sbjct: 139 MTKSSLKGLKSQARPLIEANLSIIFPWKPSNLKHLLMGKILSLSLWKAFRYELYNYKFWC 198 Query: 49 -SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS 107 S + RS+V +G K QKG+GRARH S + GG+ FGP + +K Sbjct: 199 FSSTLTRSQVKASGKKRSPQKGSGRARHGSFRTVFSKKGGRVFGPKSHKRNYVFNRKEWI 258 Query: 108 LALRHAL 114 A L Sbjct: 259 RAFMFLL 265 >gi|169929959|gb|ACB05657.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 63 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ N +G + + ++FA G + ++ ++ R G +K RSEV G Sbjct: 1 MKARKYNKEGVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGG 60 Query: 62 SKM 64 K Sbjct: 61 IKP 63 >gi|254168596|ref|ZP_04875439.1| ribosomal protein L4/L1 family [Aciduliprofundum boonei T469] gi|197622430|gb|EDY35002.1| ribosomal protein L4/L1 family [Aciduliprofundum boonei T469] Length = 254 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 62/256 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56 + ++V + GE K I++ +F + ++ +R + + + +E Sbjct: 1 MRVNVYTIGGEVKRQITL-PKVFNYPYRPDLIKEAVRIFQLNRVQPHGVSPTAGMRRVAE 59 Query: 57 VAYTG---SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 G SKM G + GG P + + K+R LA Sbjct: 60 SWGPGHGISKMVP--RVGHTSRGAII-PSTVGGRAGHPPTTQKVWKRKMNIKMRRLAKYS 116 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 ALS + +V+++ K + + L + Sbjct: 117 ALSMTSNKVMVAKRGHKFSPDITLPVVVEDEFENISTVKEAIRVLQNLGIYEDIIRASEK 176 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---- 187 + LI+ + N RN+P ++++ + +N ++L Sbjct: 177 RIRGGKGKRRGRRYKKKKSVLIVVSNK--DNVLKGFRNLPGVDIVTPRELNA-EVLAPGT 233 Query: 188 RCSKL-VLSKSAIEAL 202 +L + ++SAI+ + Sbjct: 234 HAGRLAIFTESAIKEI 249 >gi|84994848|ref|XP_952146.1| 60S ribosomal subunit protein L4/L1 [Theileria annulata strain Ankara] gi|65302307|emb|CAI74414.1| 60S ribosomal subunit protein L4/L1, putative [Theileria annulata] Length = 426 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 48/247 (19%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV ++ E + ++ +F+ + ++ V S KR + S + + Sbjct: 7 VSVFSVSTEKRMGSTIMPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQTSARSW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG + KG G R + + F G F P + K + LAL Sbjct: 67 GTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVS 126 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNAL------- 152 +S + +V+D+ + KT+ V ++ L++ L Sbjct: 127 VAATASVPLVMSRGHRVESVPELPLVLDDTMETLTKTRDAVELLNSMGLADELKRVSVTK 186 Query: 153 -------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLS 195 ++ + A RNIP ++++ V+ +N+ + ++ S Sbjct: 187 RTKRKGKKRPVGPLVVMRSTAVEGKRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFS 246 Query: 196 KSAIEAL 202 KSA E L Sbjct: 247 KSAFELL 253 >gi|297619638|ref|YP_003707743.1| 50S ribosomal protein L4P [Methanococcus voltae A3] gi|297378615|gb|ADI36770.1| 50S ribosomal protein L4P [Methanococcus voltae A3] Length = 253 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 100/262 (38%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 + + NLDG +KG +++ +F+ + + ++ R + K KG + +A Sbjct: 1 MNAKIFNLDGSEKGEVAI-PSVFSAEYRPDLIKRAVISSLTAKLQ----PKGSNLLAGHR 55 Query: 60 TGSKMYVQKGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 T +K KG GRAR V Q GG +A GP I + + +K R AL+ Sbjct: 56 TSAKSIG-KGHGRARVRRTAQGGGAFVPQAVGGRRAHGPKVEKILLERINRKERLKALQS 114 Query: 113 ALSDKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ ++V + S KTK + F+AL L Sbjct: 115 AIAASANVEIVKARGHIIPDVPALPLIVSEEFESI-VKTKDALDVFKALKLDADLTRAKE 173 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 + L++ D A++NI ++++ + I Sbjct: 174 GISIKAGKGKLRGRKYKKPRSVLVVVSKACD--AVKASKNIAGVDVITADDLGTMHIAPG 231 Query: 188 -RCSKLVL-SKSAIEALEDRFK 207 +L L ++ AIEAL ++F+ Sbjct: 232 TAAGRLTLWTEGAIEALREKFE 253 >gi|322815150|gb|EFZ23873.1| hypothetical protein TCSYLVIO_10010 [Trypanosoma cruzi] Length = 373 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 27/185 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58 + V NL E + +F + + + ++R Q++ + + R E+ Sbjct: 166 VPVFNLKNEVTHTRELDPFVFGMYPETEELSKNLTYWLVRCQNYASKWDY---ETR-EIW 221 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK---KVRSLALRHALS 115 K + G G R S++ Q+ GG+ P +P K S + R L+ Sbjct: 222 RKAKKNWPNTGMGMPRVSNRKNHQYPWGGRTKPSKP--WNMLMPTMDVKTWSKSNRMMLT 279 Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS------NALIIDGC-------QLDRN 162 K + V++ L E + + R + L +DG + DR+ Sbjct: 280 LKMLQGRLQVVERLTLSEPTQECYLGLCRTMSWDVRHTGGGVLFMDGGSRITPSIEFDRS 339 Query: 163 FQLAA 167 F LA Sbjct: 340 FFLAV 344 >gi|18978196|ref|NP_579553.1| 50S ribosomal protein L4P [Pyrococcus furiosus DSM 3638] gi|46396648|sp|Q8TZZ9|RL4_PYRFU RecName: Full=50S ribosomal protein L4P gi|18894005|gb|AAL81948.1| LSU ribosomal protein L4P [Pyrococcus furiosus DSM 3638] Length = 255 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G+ G I + +F + ++ R + + +GR +A Sbjct: 1 MKVKVFDLNGQPVGEIEL-PKVFFTPFRPDLIRRAVIASWTHRIQ----PQGRDPMAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---------VHALPKKVRSLALR 111 KG AR F + KK + LAL Sbjct: 56 RVTENIGKGHSMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALM 115 Query: 112 HALSDKFC---------------SNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A++ ++V+D+L K KT+ F+ L + Sbjct: 116 SAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ-KVQKTRETREIFKKLGIWDDIVRAK 174 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 LI+ G + L ARN P ++++ V + V + Sbjct: 175 EKSGVRAGKGKMRGRRYKKAKGPLIVVG--KNEGIVLGARNHPGVDVVVVDNLGVEHLAP 232 Query: 188 --RCSKL-VLSKSAIEALEDRF 206 +L V + SAIE L + + Sbjct: 233 GTHPGRLTVWTVSAIERLRELY 254 >gi|302693781|ref|XP_003036569.1| hypothetical protein SCHCODRAFT_83802 [Schizophyllum commune H4-8] gi|300110266|gb|EFJ01667.1| hypothetical protein SCHCODRAFT_83802 [Schizophyllum commune H4-8] Length = 370 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 55/259 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++VR GE + + +F + ++A V + + KR + S + +E Sbjct: 5 PTVNVRTSSGEASTSLPL-PAVFTAPIRLDVVAAVHKSVAKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + R A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFATV 123 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 +L+ + I +VID+ KTK V + L ++ Sbjct: 124 SSLAATALPSLVLARGHRIEEIEEVPLVIDSAAESFTKTKEAVALLKTLKAYRDVVKVSN 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D A RN+P + L+ V+ +NV + Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNVLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 L V+ ++ A L++ F Sbjct: 244 LGRFVIWTEGAFGLLDEVF 262 >gi|13310846|gb|AAK18638.1|AF250389_4 ribosomal protein L4 [Candidatus Carsonella ruddii] Length = 172 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%) Query: 43 RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALP 102 K+ G K R + + K + QKG GRAR SK ++GGG +F + Sbjct: 33 FKKKGYK--KNRRLIKGSNKKPWPQKGMGRARAGSKKSPIWKGGGVSFSNY---LFKKIN 87 Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162 ++ + L SN + + + N + + N Sbjct: 88 LNLK-NIFKSLLFLSIFSNK--------IFIFEEFLIFFLINIFNNKNYCFFW--EQNDN 136 Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199 F L +NI IN +D L+ + +SK + Sbjct: 137 FFL--KNIKK--------INYFDFLKFKIIFISKKSF 163 >gi|310771950|emb|CBH28912.1| 60S RIBOSOMAL PROTEIN L4 [Anncaliia algerae] Length = 326 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 90/259 (34%), Gaps = 56/259 (21%) Query: 3 ELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEV 57 +++ N DG+ + VS+ +F + + ++ R + +R + S Sbjct: 4 QVNCYNTDGQTVEKTLEVSD-VFRVPIRADLIQDAFRCLNMARRQPYAVSPLAGMQHSAH 62 Query: 58 AYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALR 111 ++ +++ G+G R + + F G+ P V + A+ Sbjct: 63 SWGTGRAMARVPRVSGSGTRRAGQAAFANFARKGRLAHPTKVTRRWQRKFNLNAKRHAIA 122 Query: 112 HALSDKF----CSNDIMVIDNLVS----------KECKTKYLVTRFRALDLSNAL----- 152 ++ + VIDNL S + KTK V + L + L Sbjct: 123 MGIAASAVPSLLQSRGHVIDNLKSVPLVISNKVNETSKTKEAVQILKNFGLKDQLEKVSN 182 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 I+ + + A RNI ++L+ V +N+ D+ + Sbjct: 183 NVKIRAGKGKARNRRYKMKKGILIVYKEKTSMVKAFRNIEGVDLIGVDRLNIIDLCPGGQ 242 Query: 189 CSKLVL-SKSAIEALEDRF 206 +L+L + A EAL D + Sbjct: 243 AGRLILWVEDAFEALSDIY 261 >gi|14591534|ref|NP_143616.1| 50S ribosomal protein L4P [Pyrococcus horikoshii OT3] gi|6094080|sp|O59420|RL4_PYRHO RecName: Full=50S ribosomal protein L4P gi|3258211|dbj|BAA30894.1| 255aa long hypothetical 50S ribosomal protein L4 [Pyrococcus horikoshii OT3] Length = 255 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 83/262 (31%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G+ I + +F + ++ R + + +GR +A Sbjct: 1 MKVKVFDLNGQPVDEIEL-PRVFLTPFRPDLIRRAVIASWTHRIQ----PQGRDPMAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---------VHALPKKVRSLALR 111 KG G AR F + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERLKTPPRYAAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIM 115 Query: 112 HALSDKFC---------------SNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A++ ++V+D+L K KT+ F+ L + Sbjct: 116 SAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQ-KVSKTRETREIFKKLGIWEDIERAK 174 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 LI+ G + ARN P ++++ V + V + Sbjct: 175 EKSGVRAGKGKMRGRRYKKAKGPLIVVG--KNEGIVFGARNHPGVDVVVVDNLGVEHLAP 232 Query: 188 --RCSKL-VLSKSAIEALEDRF 206 +L V + SAIE L + + Sbjct: 233 GTHPGRLTVWTVSAIERLREIY 254 >gi|289810161|ref|ZP_06540790.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +LD N LAARN+ +++ GI+ ++ K+V++ A++ +E+ Sbjct: 1 ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 49 >gi|125557447|gb|EAZ02983.1| hypothetical protein OsI_25124 [Oryza sativa Indica Group] Length = 405 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGR 54 +SV+ L+G+ + ++++E +F + ++ V R S KR + S + Sbjct: 9 VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 67 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + +R +A Sbjct: 68 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 127 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145 + AL+ + I +VI + KT + + Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 187 Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ LI+ G + + A RN+P +++ V+ +N+ D+ Sbjct: 188 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSK-IVKAFRNLPGVDVANVERLNLLDLA 246 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + LE+ + Sbjct: 247 PGGHLGRFVIWTESAFKKLEEVY 269 >gi|313227627|emb|CBY22774.1| unnamed protein product [Oikopleura dioica] Length = 351 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +SV DG +F + ++ V + R G + + +E Sbjct: 8 VSVYGADGSATAEQINLPAVFKAPIRTDVVQFVHSNIAKNARQPYAVAGNAGEQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G +R + + GG+ F P + R A A Sbjct: 68 GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNVTQRRYATVSA 127 Query: 114 L------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALD------------ 147 + S ++ VID+ KTK V+ + + Sbjct: 128 IAATGIPSLAMAKGHVVNNVPEFPLVIDSSAEALKKTKAAVSVLKKVGAIDDVNRVKETR 187 Query: 148 --------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + + + D A RNIP + LLPV +N+ + + Sbjct: 188 RFRAGRGKMRNRRRVQKRGPLVVYKNDDGIVQAMRNIPGVTLLPVDQLNLLKLAPGGHVG 247 Query: 193 ---VLSKSAIEALEDRF 206 + + A +AL++ + Sbjct: 248 RFTIYTSEAFKALDNVY 264 >gi|302348733|ref|YP_003816371.1| 50S ribosomal protein L4P [Acidilobus saccharovorans 345-15] gi|302329145|gb|ADL19340.1| 50S ribosomal protein L4P [Acidilobus saccharovorans 345-15] Length = 276 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 96/262 (36%), Gaps = 67/262 (25%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY---- 59 + + +G++ G + + + +F + ++ ++ RV + KGR +A Sbjct: 18 VPKYDAEGKEAGEVQLPD-VFRVPVRRDLIHRVFMSEFTAALQ----PKGRDPMAGKRTT 72 Query: 60 --------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLAL 110 +++ +G+ RAR RGG +AF P V + + R L Sbjct: 73 AVSLGIHHGLARVPRIRGSTRARL----APFVRGGRRAFPPTVEKKIKEDVNRTERILGT 128 Query: 111 RHALSDKFCSNDI-------------MVIDNLVSKECK-TKYLVTRFRALDLSN------ 150 AL+ + +++D+ VS+ K T + + + Sbjct: 129 MSALAATAIPELVRDRGHVFSATATPIILDSSVSEAVKRTSDARELLSKIGVYSDIERAY 188 Query: 151 ---------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 +++ +D F + R P ++++ Q ++V ++ Sbjct: 189 EGTRIRAGKGKMRGRRYVTPVSILFIVDDIDSPFARSVRGFPGVDVVEPQLVSVLELAPG 248 Query: 188 -RCSKL-VLSKSAIEALEDRFK 207 +L V++ +A+ AL +RFK Sbjct: 249 GEPGRLTVITSNALNALAERFK 270 >gi|170291101|ref|YP_001737917.1| 50S ribosomal protein L4P [Candidatus Korarchaeum cryptofilum OPF8] gi|170175181|gb|ACB08234.1| Ribosomal protein L4 [Candidatus Korarchaeum cryptofilum OPF8] Length = 265 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 97/261 (37%), Gaps = 60/261 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRK-----RIGCSKSKGRSE 56 +E+ V NL+GE G I + +F L +Q I+ RV Q + R + + +E Sbjct: 4 MEVPVYNLNGEVIGRIELPP-LFELDVRQDIIRRVYLSQLTARIQPQGRDPLAGLRTSAE 62 Query: 57 ---VAYTGSKMYVQKGTGRARHS-SKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLA 109 V + +++ KG G + GG K P + KK R LA Sbjct: 63 SLGVGHGIARVPRVKGRGYPAAGRAARAVMAVGGAKTKA--PRSWKVVWERVNKKERRLA 120 Query: 110 LRHALSD-----------KFCSN---DIMVIDNLV------------------------- 130 + A++ + I+V D++ Sbjct: 121 IGSAIAATSHPELVGARHRIPEGIALPIVVSDDIESIAKTSDLHKLLKKLGLEEELERCK 180 Query: 131 --SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 + + R R + +I + D +LA+RNIP ++ + ++ ++V + Sbjct: 181 RRFGKIRAGRGKMRGRVRQRARGPLIIYSREDSPLKLASRNIPGVDAVSLRNLSVMHLAP 240 Query: 188 --RCSKLVL-SKSAIEALEDR 205 + +L + S+S+I ALE+ Sbjct: 241 GGKPGRLTIWSESSIRALEEV 261 >gi|326504742|dbj|BAK06662.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 362 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 55/259 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++V GE G +++ +F + ++ +V + + KR + + +E Sbjct: 5 PTVTVYAASGEASGSLAL-PSVFTAPIRLDVVQQVHKSMNKNKRQAYGVFENAGHQHSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G+G AR + GG+ F P + + R Sbjct: 64 SWGTGRAVARIPRIAGSGTARAGQGAFGNMCRGGRMFAPTKTFRKWHVKINQNQRRYAVA 123 Query: 109 -------ALRHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 L+ I +V+ + KTK V + + + ++ Sbjct: 124 SALAASALPSLVLARGHRVEQIQEVPLVLADSAESLKKTKEAVELLKTVKAYSDIVKVSN 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + + D A RNIP + PV +N+ + Sbjct: 184 SRKIRAGKGKMRNRRHRQRRGPLVVYKNDEGIVKALRNIPGVETCPVSALNLLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 + V+ ++ A AL++ + Sbjct: 244 VGRFVIWTEGAFGALDEVY 262 >gi|296109264|ref|YP_003616213.1| 50S ribosomal protein L4P [Methanocaldococcus infernus ME] gi|295434078|gb|ADG13249.1| 50S ribosomal protein L4P [Methanocaldococcus infernus ME] Length = 249 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 69/262 (26%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRS 55 M + V NL+GE I + + +F + + I+ R + G + + + Sbjct: 1 MAK--VYNLEGEVVKEIELPD-VFYTEYRPDIIRRAFLSAFTARLQPKGTDVLAGLRTSA 57 Query: 56 EVAYTGSKMYVQKGTGRARH------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSL 108 + KG G AR + V Q GG +A P I + +K R L Sbjct: 58 KNIG--------KGHGMARVDRVPQGWAVRVPQAVGGRRAHPPKVEKILWERVNRKERLL 109 Query: 109 ALRHALSDKFC-----------SNDI-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156 A++ A++ ++ ++I++ KTK + F+ L L ++ Sbjct: 110 AIKSAIAATANLELVKERGHIFEGEVPLIIEDGFENLQKTKEVFEVFKRLGLDK--DVER 167 Query: 157 CQLDRNFQ----------------------------LAARNIPNINLLPVQGINVYDIL- 187 + + + LA+RN+P ++++ V+ + + + Sbjct: 168 AKKGKKVRAGKGKMRGRRYKKKKSVLVVVKDKCPAVLASRNLPGVDVITVKDLGILHLAP 227 Query: 188 --RCSKLVL-SKSAIEALEDRF 206 +L L ++ A+E L++RF Sbjct: 228 GGVAGRLTLWTEGALEKLKERF 249 >gi|313103625|pdb|3IZ5|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|315113297|pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|34393487|dbj|BAC83047.1| putative 60S ribosomal protein L4/L1 [Oryza sativa Japonica Group] gi|125599330|gb|EAZ38906.1| hypothetical protein OsJ_23326 [Oryza sativa Japonica Group] gi|215686382|dbj|BAG87643.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737561|dbj|BAG96691.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737607|dbj|BAG96737.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737716|dbj|BAG96846.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765851|dbj|BAG87548.1| unnamed protein product [Oryza sativa Japonica Group] Length = 405 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGR 54 +SV+ L+G+ + ++++E +F + ++ V R S KR + S + Sbjct: 9 VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 67 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + +R +A Sbjct: 68 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 127 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145 + AL+ + I +VI + KT + + Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 187 Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ LI+ G + + A RN+P +++ V+ +N+ D+ Sbjct: 188 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSK-IVKAFRNLPGVDVANVERLNLLDLA 246 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + LE+ + Sbjct: 247 PGGHLGRFVIWTESAFKKLEEVY 269 >gi|297606826|ref|NP_001059041.2| Os07g0180900 [Oryza sativa Japonica Group] gi|255677563|dbj|BAF20955.2| Os07g0180900 [Oryza sativa Japonica Group] Length = 425 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGR 54 +SV+ L+G+ + ++++E +F + ++ V R S KR + S + Sbjct: 29 VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 87 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + +R +A Sbjct: 88 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 147 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145 + AL+ + I +VI + KT + + Sbjct: 148 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 207 Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ LI+ G + + A RN+P +++ V+ +N+ D+ Sbjct: 208 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSK-IVKAFRNLPGVDVANVERLNLLDLA 266 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + LE+ + Sbjct: 267 PGGHLGRFVIWTESAFKKLEEVY 289 >gi|326511094|dbj|BAJ91894.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 362 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 55/259 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++V + +GE G +++ +F + ++ +V + + KR + + +E Sbjct: 5 PTVTVFSGNGEASGSLAL-PSVFTAPIRLDVVQQVHKSMNKNKRQAYGVFNKAGHQHSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G+G AR + GG+ F P + + R Sbjct: 64 SWGTGRAVARIPRIAGSGTARAGQGAFGNMCRGGRMFAPTKTFRKWHVKINQNQRRYAVA 123 Query: 109 -------ALRHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 L+ I +V+ + KTK V + + + ++ Sbjct: 124 SALAASALPSLVLARGHRVEQIQEVPLVLADSAESLKKTKEAVELLKTVKAYSDIVKVSN 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + + D A RNIP + PV +N+ + Sbjct: 184 SRKIRAGKGKMRNRRHRQRRGPLVVYKNDEGIVKALRNIPGVETCPVTALNLLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 + V+ ++ A AL++ + Sbjct: 244 VGRFVIWTEGAFGALDEVY 262 >gi|57641476|ref|YP_183954.1| 50S ribosomal protein L4P [Thermococcus kodakarensis KOD1] gi|73917535|sp|Q5JDI0|RL4_PYRKO RecName: Full=50S ribosomal protein L4P gi|57159800|dbj|BAD85730.1| LSU ribosomal protein L4P [Thermococcus kodakarensis KOD1] Length = 255 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 87/261 (33%), Gaps = 63/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V NL+GE I + +F+ + ++ R + + +GR A Sbjct: 1 MKVKVFNLEGEPVEEIEL-PKVFSTPFRPDLIRRAVIASWTHRIQ----PQGRDPQAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKS-VSQF-------RGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR +F GG + P I + KK R LA+ Sbjct: 56 RVTENIGKGHGMARVERIKTSPRFAAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIM 115 Query: 112 HALSDKFCSN----DIMVIDNL-------------VSKECKTKYLVTRFRALD------- 147 A++ + V+DN+ V K +T+ + + D Sbjct: 116 SAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKK 175 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 LI+ + ARN P ++++ V + V + Sbjct: 176 NTKIRAGKGKMRGRRYKKAKGPLIVVA--KNEGIVQGARNHPGVDVVTVDNLGVEYLAPG 233 Query: 188 -RCSKLVL-SKSAIEALEDRF 206 +L + +K AIE L + + Sbjct: 234 THPGRLTIWTKGAIERLREIY 254 >gi|302807170|ref|XP_002985298.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii] gi|300147126|gb|EFJ13792.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii] Length = 343 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59 + L N + EDK + ++EDIF + ++ I+ V++WQ ++R G K R EVA Sbjct: 289 MVLPATNWEQEDKRTLPIAEDIFDVPMRKDIVQHVVKWQRAKRRKGT---KTRGEVAG 343 >gi|332158023|ref|YP_004423302.1| 50S ribosomal protein L4P [Pyrococcus sp. NA2] gi|331033486|gb|AEC51298.1| 50S ribosomal protein L4P [Pyrococcus sp. NA2] Length = 255 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+G+ I + +F + ++ R + + +GR +A Sbjct: 1 MKVKVFDLNGQPVDEIEL-PKVFFTPFRPDLIRRAVIASWTHRIQ----PQGRDPMAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---------VHALPKKVRSLALR 111 KG G AR F + KK + LAL Sbjct: 56 RVTENIGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALM 115 Query: 112 HALSDKFC---------------SNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A++ ++V+D L K KT+ F+ L + Sbjct: 116 SAIAATANYDIVRARGHIIDNVPQLPLIVVDELQ-KISKTRETREIFKKLGIWDDIMRAK 174 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187 LI+ G + ARN P ++++ V + V + Sbjct: 175 EKSGIRAGKGKMRGRRYKKAKGPLIVVG--KNEGIVFGARNHPGVDVVVVDNLGVEHLAP 232 Query: 188 --RCSKL-VLSKSAIEALEDRF 206 +L V + SAIE L + + Sbjct: 233 GTHPGRLTVWTVSAIERLREIY 254 >gi|254577101|ref|XP_002494537.1| ZYRO0A03828p [Zygosaccharomyces rouxii] gi|238937426|emb|CAR25604.1| ZYRO0A03828p [Zygosaccharomyces rouxii] Length = 362 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 82/259 (31%), Gaps = 54/259 (20%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RSE 56 ++SV++L+G+ +FA + I+ V + KR S S +E Sbjct: 4 PQVSVQSLEGKATSSAVPLPAVFAAPIRADIVHSVFTSVNKNKRQAYSVSPQAGMQHSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G + GG+ F P + + + A Sbjct: 64 SWGTGRAVARIPRVAGGGTHAAGQGAFGNMCRGGRMFAPTKTWRRWNVKVNQNEKRYATA 123 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 A++ + + +V+ N + +TK V+ ++L L+ Sbjct: 124 SAIAASGVASLVLARGHRVEKIPEIPLVVSNDLESITRTKEAVSALKSLGAGADLVKVVR 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188 + D A RN+P + V +N+ + Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAQDNGLVKAFRNVPGVETCDVTALNLLQLAPGAH 243 Query: 189 CSKLVL-SKSAIEALEDRF 206 + V+ ++ A L+ + Sbjct: 244 LGRFVIWTEGAFSKLDKVW 262 >gi|320101367|ref|YP_004176959.1| 50S ribosomal protein L4P [Desulfurococcus mucosus DSM 2162] gi|319753719|gb|ADV65477.1| LSU ribosomal protein L4P [Desulfurococcus mucosus DSM 2162] Length = 272 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 60/259 (23%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--T 60 +++V +DG G + + E +F + + ++ R + S G + KGR +A T Sbjct: 16 KVNVYGVDGNVIGEVELPE-VFNVPIRVDLVRRA--FHSAFT--GMLQPKGRDPLAGKRT 70 Query: 61 GSKMYVQKGTGRAR-----HSSKSVSQFRGGG-KAFGPVP-IIGVHALPKKVRSLALRHA 113 +K + G G AR + + G AF P P + +K R +A+ A Sbjct: 71 TAKYWG-VGYGIARVPRLPNGTARFVVSTRKGHAAFPPTPWERIREEVNRKERVMAIVSA 129 Query: 114 LSD------------KFCSNDIMVI--DNLVSKECKTKYLVTRFRALDL----------- 148 L+ F + V+ D++ S K + L Sbjct: 130 LAATSRVDMVRRRGHVFSVERLPVVVSDDVESAISKASQAREYLEKIGLWSDVERSREGT 189 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LR 188 +++ + A RN+P +++ ++V + + Sbjct: 190 GIRAGRGKMRGRAYVEPRSILFVLSSYESPLARAVRNLPGVDVSTPGNLSVLHLAPGGVP 249 Query: 189 CSKLVLSKSAIEALEDRFK 207 +V+S+ A+E + +++ Sbjct: 250 GRLMVISRRALEEVASKYR 268 >gi|193083865|gb|ACF09546.1| ribosomal protein L4 [uncultured marine group II euryarchaeote KM3-85-F5] Length = 292 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 92/268 (34%), Gaps = 76/268 (28%) Query: 9 LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAY-TGSK 63 ++ +D +++ E F+ + + I+ + +R K R+ S Sbjct: 28 VEAKDGKAVTLPEA-FSSEVRPDIIRSAVHASRANRRQSYGHREHDGK-RAPQPGMKHSV 85 Query: 64 MYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115 + KG G +R + RGG +A GP L K R++A A++ Sbjct: 86 EWWGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKARTVARNAAIA 145 Query: 116 D------------KFCSN-DI-MVIDNLVSKEC---------------KTKYLVTRFRAL 146 +F ++ID+ V T+ V AL Sbjct: 146 ASCDPELVSSRGHRFEEGTRFPIIIDDYVESRGGTDEKYAIESIPLQYSTRKFVAMMEAL 205 Query: 147 DLS---------------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179 L+ +L++ Q D AARN+P ++++ + Sbjct: 206 GLADDLVRSKQGRTIRAGKGTMRSRKYRTPRSLLLVVSQKD-GLDKAARNVPGVDVVTAK 264 Query: 180 GINVYDIL---RCSKLVL-SKSAIEALE 203 ++ D+ +L + +K+AIEALE Sbjct: 265 DLSAEDLAPGGDPGRLTIWTKAAIEALE 292 >gi|313217111|emb|CBY38286.1| unnamed protein product [Oikopleura dioica] gi|313225068|emb|CBY20861.1| unnamed protein product [Oikopleura dioica] Length = 350 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 82/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +SV DG +F + ++ V + R G + + +E Sbjct: 8 VSVYGADGSATAEQINLPAVFKAPIRTDVVQFVHSNIAKNARQPYAVAGNAGEQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G +R + + GG+ F P + R A A Sbjct: 68 GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNVTQRRYATVSA 127 Query: 114 L------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALD------------ 147 + S ++ VID+ KTK V+ +A+ Sbjct: 128 IAATGIPSLAMAKGHVVSRVPEFPLVIDSGAEAIKKTKAAVSVLKAVGAIDDVNRVKETR 187 Query: 148 --------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + + Q D A RNIP + LLPV +N+ + + Sbjct: 188 RQRAGRGKMRNRRRVQKRGPLVVYQNDDGIVQAMRNIPGVTLLPVDQLNLLKLAPGGHVG 247 Query: 193 ---VLSKSAIEALEDRF 206 V + +A +AL+ + Sbjct: 248 RFTVYTANAFKALDTVY 264 >gi|225320687|dbj|BAH29739.1| ribosomal protein L4 [Dicyema japonicum] Length = 345 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 ++V ++GE +F + I+++V R + K + Sbjct: 6 VNVYMMNGERSDNQISLPSVFKTPIRPDIISKVADEMRKNTRQPYGVSKTAGVKVSAHSW 65 Query: 59 YTGSKMYVQK-----GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 TG M GTGRA + G + + K + A+ A Sbjct: 66 GTGRAMARIPRVSGSGTGRASQGAYGNMCRGGHMFGGTKIFRRWYRKINLKQKRYAICSA 125 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGC 157 ++ + + +V+DN V +TK V + L+ +ID Sbjct: 126 IAASGVSSLVMAKGHRVEEIPEFPLVVDNDVENLLRTKDAVNLLKKLNAYPDVEKVIDTK 185 Query: 158 QL------------------------DRNFQLAARNIPNINLLPVQGIN 182 ++ D A RN+P + LLPV+ +N Sbjct: 186 RIRPGRGKMRNRRHVLRRGPLVIYKEDNGITKAFRNLPGVELLPVEKLN 234 >gi|154150076|ref|YP_001403694.1| 50S ribosomal protein L4P [Candidatus Methanoregula boonei 6A8] gi|166234683|sp|A7I5P0|RL4_METB6 RecName: Full=50S ribosomal protein L4P gi|153998628|gb|ABS55051.1| ribosomal protein L4/L1e [Methanoregula boonei 6A8] Length = 248 Score = 67.8 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 95/257 (36%), Gaps = 62/257 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG---------CSKSK 52 ++ V+ ++G I + +F+ + + ++ + + +R CS + Sbjct: 1 MKAQVKTIEGGVAKDIEL-PAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAV 59 Query: 53 GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALR 111 G ++ G+ RA V Q +GG +A PV + + K + A R Sbjct: 60 GWGSGRGASHVPRLKNGS-RA----AKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFR 114 Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ ++ I ++ ++ KT+ +++ + + Sbjct: 115 SAVAASIRADLISSRGHRFEGTVPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESR 174 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRC 189 +L+I + AARN+ ++++ V +NV + ++ Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAGVDVVTVDQLNVEHLAPGMQA 231 Query: 190 SKL-VLSKSAIEALEDR 205 +L V ++SA+ LE R Sbjct: 232 GRLTVWTESAVIRLEGR 248 >gi|124484911|ref|YP_001029527.1| 50S ribosomal protein L4P [Methanocorpusculum labreanum Z] gi|124362452|gb|ABN06260.1| LSU ribosomal protein L4P [Methanocorpusculum labreanum Z] Length = 247 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 65/257 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56 ++ +V+ ++G I + +F + ++ R + + + + +E Sbjct: 1 MKANVKAINGSVLHEIEL-PAVFDEAYRPDLIKRAILAYQSEQYQPHGADPYAGMRTSAE 59 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 + K+ K RA V +GG A P I V + KK ++ A+R Sbjct: 60 GWGSKRGEAKIPRIKNGSRA----AKVPNVKGGHPAHAPKAEKILVEKINKKEKAKAIRS 115 Query: 113 ALSD------------KFCSNDIMVIDNLVSKECKTKYLVTRFRALDL------------ 148 A++ KF +++D+ + KT + AL L Sbjct: 116 AIAATVNTELVTARGHKFEGEAAIIVDDSFEQIAKTAEVKLALVALGLGADLERARLSRN 175 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----R 188 +ALI+ + LA NI ++ + V +N+ ++L Sbjct: 176 IRAGRGKTRGRKYKQAKSALIVTSGE-----FLAGANIAGVDCVSVNALNI-NVLAPGAD 229 Query: 189 CSKL-VLSKSAIEALED 204 +L V +++AI+ + Sbjct: 230 AGRLTVWTEAAIKKFVE 246 >gi|159905510|ref|YP_001549172.1| 50S ribosomal protein L4P [Methanococcus maripaludis C6] gi|226730689|sp|A9A9B7|RL4_METM6 RecName: Full=50S ribosomal protein L4P gi|159887003|gb|ABX01940.1| ribosomal protein L4/L1e [Methanococcus maripaludis C6] Length = 252 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 99/261 (37%), Gaps = 65/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V NLDG +KG I + +F + + ++ R + +K + + A+ G Sbjct: 1 MNVKVYNLDGSEKGDIEL-PAVFETEYRPDLIKRAVISSL------TAKLQPKGCDAFAG 53 Query: 62 SKMYVQ---KGTGRAR-----HSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG G+AR + + V Q GG +A P I + +K R AL Sbjct: 54 YRTSAKSIGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKERLKALA 113 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V++ KTK ++ F AL L Sbjct: 114 SAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKD 173 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 + L++ G D A+RN+ ++++ ++ I Sbjct: 174 GVKIKAGRAKLRGRKYKKPKSVLVVVGDACD--AVAASRNLAGVDVITANDLSAIHIAPG 231 Query: 188 -RCSKLVL-SKSAIEALEDRF 206 +L L ++SAIE L RF Sbjct: 232 TMAGRLTLWTESAIEKLNGRF 252 >gi|71030984|ref|XP_765134.1| 60S ribosomal protein L4/L1 [Theileria parva strain Muguga] gi|68352090|gb|EAN32851.1| 60S ribosomal protein L4/L1, putative [Theileria parva] Length = 389 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 48/251 (19%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV ++ E + +V +F+ + ++ V S KR + S + + Sbjct: 7 VSVFSVSTERRMGSTVMPRVFSTPLRSDLVRYVHTNMSKNKRQAYAVSRLSGYQTSARSW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG + KG G R + + F G F P L K R LAL A Sbjct: 67 GTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTKTWRRWHRKLNLKERRLALASA 126 Query: 114 LSDKF-------CSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNAL------- 152 +S + + +V+D+ V KT+ V ++ L + L Sbjct: 127 VSATAVVPLVMSRGHRVESVPELPLVLDDTVENLTKTRDAVELLNSMGLGDELKRVNTVK 186 Query: 153 -------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC---SKLVL-S 195 ++ + A RNIP ++++ V+ +N+ + +LVL S Sbjct: 187 RTKRKGRKYPVGPLVVLRSSAVEGKRAFRNIPGVDVVSVEHLNLLKLAPAGTLGRLVLYS 246 Query: 196 KSAIEALEDRF 206 +SA E L+ Sbjct: 247 RSAFELLDTVL 257 >gi|320531961|ref|ZP_08032862.1| hypothetical protein HMPREF9057_00730 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135828|gb|EFW27875.1| hypothetical protein HMPREF9057_00730 [Actinomyces sp. oral taxon 171 str. F0337] Length = 55 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK 52 + V + G+ G + + ++F ++ +V+ Q R G +K Sbjct: 6 TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATK 55 >gi|312220746|emb|CBY00687.1| similar to 60S ribosomal protein L4 [Leptosphaeria maculans] Length = 371 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ + GE + ++F + I+ V + +R + S + +E Sbjct: 4 PTVTIISAKGEASSDTATVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A Sbjct: 64 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINQNQKRFATA 123 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKEC---KTKYLVTRFRALD------- 147 A++ + I +V+ + + KT V +A+ Sbjct: 124 SAIAASGSPALLLARGHHISTVPEVPLVVSSTAFADGAIKKTSAAVALLKAVGAGGDVEK 183 Query: 148 ---------------------LSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L+I D ++ LA RNIP + V +N Sbjct: 184 AKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKDLVLAFRNIPGVETSSVYSLN 240 >gi|134045078|ref|YP_001096564.1| 50S ribosomal protein L4P [Methanococcus maripaludis C5] gi|226730688|sp|A4FVY1|RL4_METM5 RecName: Full=50S ribosomal protein L4P gi|132662703|gb|ABO34349.1| LSU ribosomal protein L4P [Methanococcus maripaludis C5] Length = 252 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 101/261 (38%), Gaps = 65/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V NLDG +KG I + +F + + ++ R + +K + + A+ G Sbjct: 1 MNVKVYNLDGSEKGDIEL-PAVFETEYRPDLIKRAVISSL------TAKLQPKGCDAFAG 53 Query: 62 SKMYVQ---KGTGRAR-----HSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG G+AR + + V Q GG +A P I + KK + AL Sbjct: 54 YRTSAKSIGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALA 113 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V++ KTK ++ F+AL+L Sbjct: 114 SAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKD 173 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 + L++ G + A+RN+ ++++ ++ I Sbjct: 174 GIKIKAGRAKLRGRKYKKPRSVLVVVGDACE--AIAASRNLAGVDVITANDLSAIHIAPG 231 Query: 188 -RCSKLVL-SKSAIEALEDRF 206 +L L +++AIE + RF Sbjct: 232 TMAGRLTLWTENAIEKINGRF 252 >gi|116335056|ref|YP_802551.1| ribosomal protein L4 [Candidatus Carsonella ruddii PV] gi|13272300|gb|AAK17083.1|AF274444_13 ribosomal protein L4 [Candidatus Carsonella ruddii] gi|116235337|dbj|BAF35185.1| ribosomal protein L4 [Candidatus Carsonella ruddii PV] Length = 172 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 R V +G K ++QKGTGRAR K +R GG F + KK + L + Sbjct: 43 RRLVFGSGKKPWIQKGTGRARAGDKKSPIWRSGGVTFSN----YLFKKKKKKQKNVLINL 98 Query: 114 LSDKFCSNDIMVID 127 ++ SN I + D Sbjct: 99 INLLIYSNKIFIFD 112 >gi|320580201|gb|EFW94424.1| 60S ribosomal protein L4-B [Pichia angusta DL-1] Length = 701 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 56/261 (21%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV +LDG+ S+ +F + I+ V + KR + + + + Sbjct: 4 PQVSVVSLDGKATSS-SLPLPAVFKAPIRPDIVHSVFTRVNKNKRQAYAVAENAGHQTSA 62 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 63 ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRRWHVKVNLNEKRYAT 122 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL-SNALIID 155 L+ +I +V+ + + KTK V +A+ + + + Sbjct: 123 ASAIAATAVQSLVLARGHRVEEIPQIPLVVSSDLESVTKTKEAVAVLKAVGAHKDVVKVI 182 Query: 156 GCQL-------------------------DRNFQLAARNIPNINLLPVQGINVYDI---L 187 + D+ A RN+P + PV + + + Sbjct: 183 KSKKMRAGKGKLRGRRFTQRRGPLIVYGEDKGLVKAFRNLPGVETAPVTALGLLQLAPGA 242 Query: 188 RCSKLVL-SKSAIEALEDRFK 207 + V+ ++SA AL+ ++ Sbjct: 243 HLGRFVIWTESAFAALDSVYQ 263 >gi|242068967|ref|XP_002449760.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor] gi|241935603|gb|EES08748.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor] Length = 79 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198 D L++DG +D+ +LA +N+ +N+LP G++VY IL+ L ++++A Sbjct: 3 DTKKVLLVDGGDIDKILRLATQNLHYVNVLPSIGLDVYSILQHDTLAMTQAA 54 >gi|61654616|gb|AAX48834.1| L4/L1 [Suberites domuncula] Length = 357 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 55/231 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V + +G+D ++ +F + ++ V KR + +K +E Sbjct: 6 VTVFSDEGKDVAQTTL-PAVFKAPIRTDVIQFVHTNMRKNKRQPYAVSTKAGHQTSAESW 64 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + R A+ A Sbjct: 65 GTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWHRRINQNQRRYAMCSA 124 Query: 114 LSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALD------------ 147 L+ + I +V+DN + K KTK + +AL+ Sbjct: 125 LAATALPALVTARGHRIDNIGEVPLVVDNAIEKLTKTKDAIKLLKALNAYPDVQKSKDSK 184 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L+I D+ A RN+P + LL V +N Sbjct: 185 KVRPGKGKMRNRRYVQRKGPLVI--YNEDQGITRAFRNLPGVELLKVDRMN 233 >gi|47079405|gb|AAT10148.1| ribosomal protein L4 [uncultured marine group II euryarchaeote DeepAnt-JyKC7] Length = 304 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 92/269 (34%), Gaps = 74/269 (27%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAYTGS 62 ++ ++ +++ + +F+ + ++ ++ R + +R K + + S Sbjct: 38 YTVEAKNGKAVTLPD-VFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHS 96 Query: 63 KMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114 + KG G +R ++ RGG +A GP + K +A A+ Sbjct: 97 VEWWGKGRGVSRIMRKAGQRTAAQNPHTRGGRRAHGPKVDKDWSQKINSKENRIARDSAI 156 Query: 115 SDKFCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFRA 145 + SN + ++ID V + T+ V Sbjct: 157 AASASSNLVSERGHHFEASLRFPIIIDGYVESREGGDEKYDLESLPLQYSTRKFVAMMEG 216 Query: 146 LDLS---------------------------NALIIDGCQLDRNFQLAARNIPNINLLPV 178 L L ++++ Q + AARNIP ++++ Sbjct: 217 LGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTN-GLAKAARNIPGVDIVVA 275 Query: 179 QGINVYDIL---RCSKL-VLSKSAIEALE 203 + ++ D+ +L V +K+AI ALE Sbjct: 276 KDLSAEDLAPGGDAGRLTVWTKAAIGALE 304 >gi|146302877|ref|YP_001190193.1| 50S ribosomal protein L4P [Metallosphaera sedula DSM 5348] gi|145701127|gb|ABP94269.1| LSU ribosomal protein L4P [Metallosphaera sedula DSM 5348] Length = 263 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 78/265 (29%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 V +L G + + IF+ ++ ++ R S + G Sbjct: 11 KVLDLSGNKVKDVQLPL-IFSYPVRKDLI-----------RRAFHSSFTQGLQP-KGRDP 57 Query: 65 YVQKGT---------GRARHSSKS-------VSQFRGGGKAFGPVPIIGVH-ALPKKVRS 107 K T G AR GG AF P P V + +K + Sbjct: 58 MAGKRTTAKSFGINLGLARVPRIRGAGEGALAPNTAGGRLAFPPSPRERVKEDINEKEKR 117 Query: 108 LALRHALSD----KFCSND---------IMVIDNLVSKECKTKYLVTRFRALDLSN---- 150 LA+ AL+ + +N ++V+D+L + KT L L L Sbjct: 118 LAVISALASTTIKEIVTNRGHRFTGDLPLVVVDDLGGIK-KTAELEEILIKLGLEQELKR 176 Query: 151 ------------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L++ +L AA N+P ++++ + ++V + Sbjct: 177 ASYKRIRAGKGKMRGRKYKRTVGPLLVVHDPKLP--IVEAALNLPGVDVVSAKDVSVIHL 234 Query: 187 L---RCSKLVL-SKSAIEALEDRFK 207 +LV+ ++SA++ L+DRFK Sbjct: 235 APGGHAGRLVIYTESALKVLQDRFK 259 >gi|315229857|ref|YP_004070293.1| 50S ribosomal protein L1e (L4p) [Thermococcus barophilus MP] gi|315182885|gb|ADT83070.1| LSU ribosomal protein L1e (L4p) [Thermococcus barophilus MP] Length = 255 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+GE I + +F + ++ R + + +GR +A Sbjct: 1 MKVKVFSLNGEPIEEIEL-PKVFETPFRPDLIRRAVIASWTHRIQ----PQGRDPMAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKSV--------SQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR RGG +A P I + +K + LAL Sbjct: 56 RVTENIGKGHGMARVERIKTAPRFAAFVPFARGGRRAHPPKVEKIIWEDINRKEKKLALM 115 Query: 112 HALSDKF------CSNDIM--------VIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ I+ ++++ + K KT+ F+ L + Sbjct: 116 SAIAATANYDLVRARGHIIDNVPQIPLIVEDELEKIGKTRETREIFKKLGIWDDIERAKK 175 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 LI+ + L ARN P ++++ V + V ++L Sbjct: 176 NTKVRAGKGKMRGRRYKKAKGPLIVVA--KNEGIILGARNHPGVDVVLVDNLGV-EVLAP 232 Query: 188 --RCSKLVL-SKSAIEALEDRF 206 +L + +K AIE L + + Sbjct: 233 GTHPGRLTIWTKGAIERLREIY 254 >gi|169929938|gb|ACB05643.1| 50S ribosomal protein L4 [Leptospira weilii serovar Sarmin] gi|169929941|gb|ACB05645.1| 50S ribosomal protein L4 [Leptospira weilii serovar Celledoni] Length = 63 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RSEV G Sbjct: 1 MKAQKYSKEGKLVSEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60 Query: 62 SKM 64 K Sbjct: 61 KKP 63 >gi|169929920|gb|ACB05631.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis] gi|169929923|gb|ACB05633.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar Hardjo-bovis] gi|169929926|gb|ACB05635.1| 50S ribosomal protein L4 [Leptospira santarosai serovar Tropica] gi|169929929|gb|ACB05637.1| 50S ribosomal protein L4 [Leptospira santarosai serovar Shermani] gi|169929950|gb|ACB05651.1| 50S ribosomal protein L4 [Leptospira alexanderi serovar Mengla] gi|169929953|gb|ACB05653.1| 50S ribosomal protein L4 [Leptospira alexanderi serovar Manzhuang] gi|169929956|gb|ACB05655.1| 50S ribosomal protein L4 [Leptospira meyeri serovar Ranarum] Length = 63 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RSEV G Sbjct: 1 MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60 Query: 62 SKM 64 K Sbjct: 61 KKP 63 >gi|13310855|gb|AAK18646.1|AF250390_4 ribosomal protein L4 [Candidatus Carsonella ruddii] Length = 172 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 54 RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113 R V +G K ++QKGTGRAR +K +R GG F + KK + + Sbjct: 43 RRLVFGSGKKPWIQKGTGRARAGNKKSPIWRSGGVTFSN----YLFKKKKKNQKNVFINL 98 Query: 114 LSDKFCSNDIMVID 127 ++ SN I + D Sbjct: 99 INLLIYSNKIFIFD 112 >gi|150402716|ref|YP_001330010.1| 50S ribosomal protein L4P [Methanococcus maripaludis C7] gi|226730690|sp|A6VHD3|RL4_METM7 RecName: Full=50S ribosomal protein L4P gi|150033746|gb|ABR65859.1| ribosomal protein L4/L1e [Methanococcus maripaludis C7] Length = 252 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 63/260 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V NLDG +KG I + +F + + ++ R + +K + + A+ G Sbjct: 1 MNVKVYNLDGSEKGDIEL-PAVFETEYRPDLIKRAVISSL------TAKLQPKGCDAFAG 53 Query: 62 SKMYVQ---KGTGRAR-----HSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG G+AR + + V Q GG +A P I + +K + AL Sbjct: 54 YRTSAKSIGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALA 113 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS-------- 149 A++ + I +V++ KTK ++ F+ L L Sbjct: 114 SAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKD 173 Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 ++++ A+RN+ ++++ ++ I Sbjct: 174 GIKIKAGRAKLRGRKYKKPKSVLVVVGDACEAIA-ASRNLAGVDVITANDLSAIHIAPGT 232 Query: 188 RCSKLVL-SKSAIEALEDRF 206 +L L +++AIE + RF Sbjct: 233 MAGRLTLWTENAIEKINGRF 252 >gi|50548125|ref|XP_501532.1| YALI0C06820p [Yarrowia lipolytica] gi|49647399|emb|CAG81835.1| YALI0C06820p [Yarrowia lipolytica] Length = 363 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 50/231 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++SV + G D GV V +F + I+ V + KR + + + +E Sbjct: 5 PQVSVHGVSGSDAGVTIVLPAVFKAPIRPDIVHSVWTGVAKNKRQAYAVASNAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G+G R + GG+ F P + + A Sbjct: 65 SWGTGRAVARIPRVGGSGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHVKVNLNEKRYATA 124 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD--------LS 149 L+ I +V+ N + KTK V +A+ + Sbjct: 125 SAIAASAVAPLVLARGHRVETIAEVPLVVSNDIESLTKTKDAVAALKAVGAHRDVARVVK 184 Query: 150 NALI------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 + I + ++ A RNIP + V+ +N Sbjct: 185 SKTIRAGKGKLRNRRWTQRRGPLVVYSENKGLVKAFRNIPGVETCDVRHLN 235 >gi|302909239|ref|XP_003050029.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256730966|gb|EEU44316.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 352 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ DG G +F + I+ +V + KR + S + +E Sbjct: 5 PTVSIIGKDGAPTGATHAIPAVFTSPIRPDIVQQVHTGIAKNKRQPYAVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A+ Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHIKVNQGQKRYAVC 124 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRAL-------DLSN 150 AL+ + +V+D+ + + L D+ Sbjct: 125 SALAASAAVPLLQARGHQVNSVPEVPLVVDSALFEGAAIAKTAAALGLLKAVGAGADIEK 184 Query: 151 A------------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I + D + A RNIP + PV +N+ Sbjct: 185 VKKSKKLRAGKGKLRGRRHRQRRGPLVIYDAETDGKELVTAFRNIPGVETSPVTALNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + +A +AL+ + Sbjct: 245 LAPGGHLGRFIVWTSAAFKALDQIY 269 >gi|302832173|ref|XP_002947651.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox carteri f. nagariensis] gi|300266999|gb|EFJ51184.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox carteri f. nagariensis] Length = 410 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV N++ + + +F + I+ + + KR + + +E Sbjct: 8 VSVINIETGEAAEQTALPAVFTAPIRPDIVRTIHTNMAKNKRQAYAVFMKAGHQTAAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKVNVNQKRYAVCSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL---------SN 150 L+ + I +V+ + V KT + + + S Sbjct: 128 LAASALPSLVMARGHRIEQVPEVPLVLSDAVEGLKKTSKALEILKKIGALPDVEKSKDSK 187 Query: 151 AL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 +L ++ D A RN+P + + V +N+ + L Sbjct: 188 SLRSGKGKLRNRRYVMRKGPLVVFAN-DEGISKAFRNLPGVEVTSVDRLNLLQLAPGGHL 246 Query: 193 ----VLSKSAIEALEDRF 206 + SKSA E L+ F Sbjct: 247 GRFCIWSKSAFEKLDKIF 264 >gi|16082269|ref|NP_394727.1| 50S ribosomal protein L4P [Thermoplasma acidophilum DSM 1728] gi|46396656|sp|Q9HIR0|RL4_THEAC RecName: Full=50S ribosomal protein L4P gi|10640616|emb|CAC12394.1| probable 50S ribosomal protein L4 [Thermoplasma acidophilum] Length = 255 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 95/259 (36%), Gaps = 65/259 (25%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--GRSEVAYT 60 ++ + ++ GE KG I + E +F + ++ I+ R R S R S G V +T Sbjct: 4 KVPIYSVSGEMKGEIDLPE-VFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHT 62 Query: 61 GSKMYVQKGTGRARH-----SSKSVSQ--FRGGGKAFGPVPIIGVH-ALPKKVRSLALRH 112 G G +R S+ V GG A P ++ + + R +A Sbjct: 63 TR-----PGLGISRMPRIAGGSRVVGIASAVGGKSAHSPRTTKNLYVKINDRERKMAKYS 117 Query: 113 ALSD------------KFCSN-DI-MVIDNLVSKECKTKYLVTRFRALDL---------- 148 A++ +F + +V+++ V KTK + + L + Sbjct: 118 AIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREG 177 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ + + A R++P +++ +++ + Sbjct: 178 KHIRAGRGKMRGRRYKQPKSVLIV---ARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGG 234 Query: 188 RCSKL-VLSKSAIEALEDR 205 +L + ++ AIE+L++ Sbjct: 235 VGGRLTIFTEGAIESLKEV 253 >gi|189188410|ref|XP_001930544.1| 60S ribosomal protein L4-A [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972150|gb|EDU39649.1| 60S ribosomal protein L4-A [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 371 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + GE ++F + I+ V + +R + S + +E Sbjct: 4 PTVTVVSAKGEATTDTVPVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 64 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATA 123 Query: 112 HALSD------KFCSNDIM--------VIDNLVSKEC---KTKYLVTRFRALD------- 147 AL+ + VI + + KT V +A+ Sbjct: 124 SALAASGSPALLLARGHAISTVPEVPLVISSTAFADAAIKKTSAAVALLKAVGAGADVEK 183 Query: 148 ---------------------LSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I D + LA RNIP + V +N+ Sbjct: 184 ARNTRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVLAFRNIPGVETSSVYSLNLLQ 243 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA AL+ + Sbjct: 244 LAPGGHLGRFIVWTSSAFTALDKVY 268 >gi|218884487|ref|YP_002428869.1| 50S ribosomal protein L4P [Desulfurococcus kamchatkensis 1221n] gi|218766103|gb|ACL11502.1| 50S ribosomal protein L4P [Desulfurococcus kamchatkensis 1221n] Length = 275 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 91/260 (35%), Gaps = 60/260 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 I+++V ++G G I + E +F + ++ ++ R + KGR +A Sbjct: 18 IKVNVYGVNGNVVGEIELPE-LFNVPIRRDLIRRAFL----SAFTAMLQPKGRDPLAGKR 72 Query: 60 TGSKMYVQKGTGRAR-----HSSKSVSQFRGGG-KAFGPVPIIGVHA-LPKKVRSLALRH 112 T +K + G G AR + + G AF P P +H + KK R +A+ Sbjct: 73 TTAKYWG-VGYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEVNKKERVMAIIS 131 Query: 113 ALS-----DKFCS-------NDI--MVIDNLVSKECKTKYLVTRFRALDL---------- 148 AL+ + + +++D S KT + + L Sbjct: 132 ALAATSRPELVRERGHVFTPGRLPVIIVDEAESSISKTTQVREYLEKIGLWSDVERSLDG 191 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 +++ A RN+P +++ +++ + Sbjct: 192 MGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGNLSILHLAPGGV 251 Query: 189 CSKL-VLSKSAIEALEDRFK 207 +L V+S A+ L +++ Sbjct: 252 PGRLTVISMKALNELASKYR 271 >gi|269862132|ref|XP_002650717.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220065724|gb|EED43339.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 319 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 68/263 (25%) Query: 1 MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----R 54 M+ ++V DG+ G I+ +F ++ + ++ + + R + S Sbjct: 1 MMNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDIL 187 L+I N L+A NI + L V +N +L Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LL 232 Query: 188 R------CSKLVL-SKSAIEALE 203 R +L+L ++SA + LE Sbjct: 233 RLCPGGHLGRLILWTESAFKKLE 255 >gi|169929944|gb|ACB05647.1| 50S ribosomal protein L4 [Leptospira kirschneri serovar Mozdok] gi|169929947|gb|ACB05649.1| 50S ribosomal protein L4 [Leptospira kirschneri serovar Bim] Length = 63 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RSEV G Sbjct: 1 MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKSENANLRSGNHATKTRSEVRGGG 60 Query: 62 SKM 64 K Sbjct: 61 KKP 63 >gi|330925322|ref|XP_003301002.1| hypothetical protein PTT_12401 [Pyrenophora teres f. teres 0-1] gi|311324565|gb|EFQ90874.1| hypothetical protein PTT_12401 [Pyrenophora teres f. teres 0-1] Length = 371 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + GE ++F + I+ V + +R + S + +E Sbjct: 4 PTVTVVSAKGEATTDTVPVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 64 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATA 123 Query: 112 HALSD------KFCSNDIM--------VIDNLVSKEC---KTKYLVTRFRALD------- 147 AL+ + VI + + KT V +A+ Sbjct: 124 SALAASGSPALLLARGHAISTVPEVPLVISSTAFADAAIKKTSAAVALLKAVGAGADVEK 183 Query: 148 ---------------------LSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I D + LA RNIP + V +N+ Sbjct: 184 ARNTRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVLAFRNIPGVETSSVYSLNLLQ 243 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA AL+ + Sbjct: 244 LAPGGHLGRFIVWTSSAFTALDKVY 268 >gi|169929908|gb|ACB05623.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai] gi|169929911|gb|ACB05625.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Icterohaemorrhagiae] gi|169929914|gb|ACB05627.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Hardjo-prajitno] gi|169929917|gb|ACB05629.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Malaya] gi|169929932|gb|ACB05639.1| 50S ribosomal protein L4 [Leptospira noguchii serovar Proechymis] gi|169929935|gb|ACB05641.1| 50S ribosomal protein L4 [Leptospira noguchii serovar Panama] Length = 63 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ + +G+ I + +F K + ++ ++ R G +K RS V+ G Sbjct: 1 MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSMVSGGG 60 Query: 62 SKM 64 K Sbjct: 61 KKP 63 >gi|242032693|ref|XP_002463741.1| hypothetical protein SORBIDRAFT_01g005210 [Sorghum bicolor] gi|241917595|gb|EER90739.1| hypothetical protein SORBIDRAFT_01g005210 [Sorghum bicolor] Length = 404 Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 92/262 (35%), Gaps = 61/262 (23%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +SVR L+G+ D I +++ + + I+ V + S R + S + + Sbjct: 9 VSVRALEGDMATDSAGIPLAD-VLRAPLRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAI 127 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 ALS + + +V+ + KT + + L Sbjct: 128 ASALSATTVPSLVLARGHRVESVPELPLVVSDSAESIEKTTQAIKILKQLGAYADAEKAK 187 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P +++ V+ +N+ D+ Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSK-IVKAFRNLPGVDVANVERLNLLDLAP 246 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + L++ + Sbjct: 247 GGHLGRFVIWTESAFKKLDEVY 268 >gi|219851108|ref|YP_002465540.1| 50S ribosomal protein L4P [Methanosphaerula palustris E1-9c] gi|219545367|gb|ACL15817.1| ribosomal protein L4/L1e [Methanosphaerula palustris E1-9c] Length = 249 Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 64/258 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC-------SKSK 52 ++ + LDG I + +FA + ++ + + +R G S + Sbjct: 1 MKAQIIRLDGGVAEEIEL-PAVFAEAYRPDLIRKAVVALQSTRRQPHGTNPYAGICSSAV 59 Query: 53 GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALR 111 G ++ G+ RA V Q +GG A P + + KK + A R Sbjct: 60 GWGSGRGASHVPRLKNGS-RA----AKVPQAKGGRAAHPPKVEKILIRDINKKEKQKAFR 114 Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ C + + +V ++ + KT ++T A + Sbjct: 115 SAIAASVCEDLVRARGHQFEGACQVVFEDAFAGLTKTSEIITALTAAGVYADVERSKASK 174 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---- 188 +L+I AA N+ ++++ V +N ++L Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTRDEP---LAAAANLAGVDVVSVNALNT-ELLAPGAQ 230 Query: 189 CSKL-VLSKSAIEALEDR 205 +L V ++ A+ L +R Sbjct: 231 AGRLTVWTQGALNWLGER 248 >gi|269863125|ref|XP_002651104.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220065118|gb|EED42952.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 319 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 68/263 (25%) Query: 1 MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----R 54 M+ ++V DG+ G I+ +F ++ + ++ + + R + S Sbjct: 1 MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDIL 187 L+I N L+A NI + L V +N +L Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LL 232 Query: 188 R------CSKLVL-SKSAIEALE 203 R +L+L ++SA + LE Sbjct: 233 RLCPGGHLGRLILWTESAFKKLE 255 >gi|50285453|ref|XP_445155.1| hypothetical protein [Candida glabrata CBS 138] gi|49524458|emb|CAG58055.1| unnamed protein product [Candida glabrata] Length = 362 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 54/259 (20%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V++L GE +FA + ++ V + KR + S + +E Sbjct: 4 PQVTVQSLTGEATSSSVPLPAVFAAPIRPDLVHSVFVSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + + A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYATA 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 L+ I +V+ + KTK V +A+ L+ Sbjct: 124 SAIAASAVASLVLARGHRVEKIPEIPLVVSKDLESIKKTKEAVAALKAVGAGADLLKVIK 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188 + D A RN+P + +PV +N+ + Sbjct: 184 SKKMRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETVPVTALNLLQLAPGAH 243 Query: 189 CSKLVL-SKSAIEALEDRF 206 + V+ +++A L+ + Sbjct: 244 LGRFVIWTEAAFAKLDQVW 262 >gi|327285147|ref|XP_003227296.1| PREDICTED: 60S ribosomal protein L4-like [Anolis carolinensis] Length = 311 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 83/258 (32%), Gaps = 56/258 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 41 ISVYSEKGEVSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNSRQPYAVSELAGHQTSAESW 100 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 101 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNITQKRYAICSA 160 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 161 LAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 220 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 I + D A RNIP I +L V +N+ + + Sbjct: 221 RMRAGKGKMRNRRRIQRKGPCIIFNE-DNGIIKAFRNIPGITVLNVNKLNILRLAPGGHV 279 Query: 193 ----VLSKSAIEALEDRF 206 + ++SA L++ + Sbjct: 280 GRFCIWTESAFRKLDELY 297 >gi|269862283|ref|XP_002650777.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220065632|gb|EED43278.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 319 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 68/263 (25%) Query: 1 MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----R 54 M+ ++V DG+ G I+ +F ++ + ++ + + R + S Sbjct: 1 MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDIL 187 L+I N L+A NI + L V +N +L Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LL 232 Query: 188 R------CSKLVL-SKSAIEALE 203 R +L+L ++SA + LE Sbjct: 233 RLCPGGHLGRLILWTESAFKKLE 255 >gi|67481533|ref|XP_656116.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS] gi|56473296|gb|EAL50730.1| 60S ribosomal protein L4, putative [Entamoeba histolytica HM-1:IMSS] Length = 431 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 57/257 (22%) Query: 4 LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVA 58 +++ + + GE + +F + ++ V R QS R K S ++ Sbjct: 7 VTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66 Query: 59 YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRH 112 + +++ G+G R+ + G F P PK++R A+ Sbjct: 67 WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---- 152 ++ + +V+++ KTK V + ++ S+ L Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186 Query: 153 ----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 ++ D A RNIP ++ V+ ++V ++ Sbjct: 187 SKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246 Query: 188 RCSKLVL-SKSAIEALE 203 + ++ ++SA + L Sbjct: 247 HMGRFIIWTESAFKKLN 263 >gi|45359107|ref|NP_988664.1| 50S ribosomal protein L4P [Methanococcus maripaludis S2] gi|46396576|sp|P60846|RL4_METMP RecName: Full=50S ribosomal protein L4P gi|45047982|emb|CAF31100.1| LSU Ribosomal protein L4P [Methanococcus maripaludis S2] Length = 252 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 65/261 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 + + V NLDG +KG I + +F + + ++ R + +K + + A+ G Sbjct: 1 MNVKVYNLDGSEKGDIEL-PAVFEAEYRPDLIKRAVISSL------TAKLQPKGCDAFAG 53 Query: 62 SKMYVQ---KGTGRAR-----HSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111 + + KG G+AR + + V Q GG +A P I + +K + AL Sbjct: 54 YRTSAKSIGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALA 113 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V++ KTK ++ F+ L L Sbjct: 114 SAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKD 173 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 + L++ G + A+RN+ ++++ ++ I Sbjct: 174 GVKIRAGRGKLRGRKYIKPKSVLVVVGDACE--AITASRNLAGVDVITANDLSAIHIAPG 231 Query: 188 -RCSKLVL-SKSAIEALEDRF 206 +L L +++AIE + RF Sbjct: 232 TMAGRLTLWTENAIEKINGRF 252 >gi|54261775|ref|NP_998272.1| 60S ribosomal protein L4 [Danio rerio] gi|29436531|gb|AAH49520.1| Ribosomal protein L4 [Danio rerio] gi|45767784|gb|AAH67580.1| Ribosomal protein L4 [Danio rerio] gi|94733359|emb|CAK04709.1| ribosomal protein L4 [Danio rerio] gi|148726470|emb|CAN88105.1| ribosomal protein L4 [Danio rerio] Length = 375 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 76/237 (32%), Gaps = 57/237 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + I+ V KR + S + +E Sbjct: 8 ISVYSEKGETSGKNVVMPAVFRAPIRPDIVNFVHTNMRKNKRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVNQKRYAMCSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ + I +V+D+ V KTK L+ + +A + + Sbjct: 128 LAASALPSLVMAKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 II D A RNIP I L V + D+L+ Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCII--YNEDNGVTRAFRNIPGITLQSVSRL---DLLK 239 >gi|156085304|ref|XP_001610129.1| ribosomal protein RPL4A [Babesia bovis] gi|154797381|gb|EDO06561.1| ribosomal protein RPL4A [Babesia bovis] Length = 360 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 86/251 (34%), Gaps = 51/251 (20%) Query: 2 IELSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 E+SV N DGE G ++ +F+ + ++ V S +R + SK + Sbjct: 5 PEVSVHNATDGERVG-ATLMPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 TG ++ KG G R + + F G + P + K + AL Sbjct: 64 RSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQAL 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNAL---- 152 +S + MV+D+ + + KTK V + L L Sbjct: 124 ASALAATAVVPVVMSRGHRIEALREVPMVVDDAIEQINKTKDAVKLLETIGLGAELKRID 183 Query: 153 -----------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 +I + A RNIP + + V+ +N+ + L Sbjct: 184 KVTGRARDGRKKRPVGPLIILRATAVEGKRAFRNIPGVEVACVERLNLLKLAPAGALGRL 243 Query: 193 -VLSKSAIEAL 202 V SKSA EAL Sbjct: 244 CVWSKSAFEAL 254 >gi|260794820|ref|XP_002592405.1| hypothetical protein BRAFLDRAFT_118418 [Branchiostoma floridae] gi|229277624|gb|EEN48416.1| hypothetical protein BRAFLDRAFT_118418 [Branchiostoma floridae] Length = 394 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 82/260 (31%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V N GE V + + I+ V R + + +E Sbjct: 10 ITVHNEKGESTSVTVTMPAVMKAPIRPDIVQSVHANVRKNSRQPYCVSKLAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + R A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNINQRRYAICCA 129 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL------------- 146 LS + I +V+ + V + KTK V R L Sbjct: 130 LSASALPALVMAKGHRIEEIPEVPLVVGDKVQEMKKTKEAVQLLRKLKAWNDIQKVYNSK 189 Query: 147 -------DLSNALII------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188 + N + D A RNIP I LLPV +N +L+ Sbjct: 190 RIRAGKGKMRNRRFVKKRGPCIIYDKDNGIVRAFRNIPGITLLPVDKLN---LLKIAPGG 246 Query: 189 --CSKLVLSKSAIEALEDRF 206 L+ ++SAI+ L+ + Sbjct: 247 HLGRFLIWTESAIQKLDALY 266 >gi|67478655|ref|XP_654711.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS] gi|56471776|gb|EAL49320.1| 60S ribosomal protein L4, putative [Entamoeba histolytica HM-1:IMSS] Length = 431 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 57/257 (22%) Query: 4 LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVA 58 +++ + + GE + +F + ++ V R QS R K S ++ Sbjct: 7 VTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQHSAIS 66 Query: 59 YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRH 112 + +++ G+G R+ + G F P PK++R A+ Sbjct: 67 WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---- 152 ++ + +V+++ KTK V + ++ S+ L Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186 Query: 153 ----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 ++ D A RNIP ++ V+ ++V ++ Sbjct: 187 SKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246 Query: 188 RCSKLVL-SKSAIEALE 203 + ++ ++SA + L Sbjct: 247 HIGRFIIWTESAFKKLN 263 >gi|328768374|gb|EGF78420.1| hypothetical protein BATDEDRAFT_17297 [Batrachochytrium dendrobatidis JAM81] Length = 370 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 80/257 (31%), Gaps = 55/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V + G G +++ +F + I+ V + KR + S + + Sbjct: 7 VTVFSEKGSTIGTVTL-PAVFTAPIRDDIVNFVHTNVAKNKRQAYAVSVKAGHQTSAISW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G+G R + GG+ F P + + R A Sbjct: 66 GTGRAVARIPRVSGSGTHRAGQAAFGNMCRGGRMFAPTKVWRKWHVKVNQNQRRFATASA 125 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 L+ I +V+ + V KTK + + L D+ + Sbjct: 126 LAASALPSLVLARGHKIEQIDEVPLVVSSAVEAFTKTKAAIALLKQLKAYSDVEKVVNSK 185 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + + A NIP + V +N+ + + Sbjct: 186 KLRAGVGKLRNRRHTQRRGPLVIYDNNEGIARAFSNIPGVETCSVNALNILQLAPGGHVG 245 Query: 193 --VL-SKSAIEALEDRF 206 V+ +++A E L+ + Sbjct: 246 RFVIWTQAAFEKLDALY 262 >gi|15232723|ref|NP_187574.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] gi|17369604|sp|Q9SF40|RL4A_ARATH RecName: Full=60S ribosomal protein L4-1; Short=L1 gi|6682241|gb|AAF23293.1|AC016661_18 putative 60S ribosomal protein L1 [Arabidopsis thaliana] gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22 [Arabidopsis thaliana] gi|27311665|gb|AAO00798.1| putative 60S ribosomal protein L1 [Arabidopsis thaliana] gi|30725664|gb|AAP37854.1| At3g09630 [Arabidopsis thaliana] Length = 406 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 60/262 (22%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 ++++ LDG+ D+ V D+ + I+ V S R + SK + Sbjct: 10 VTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSA 69 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + ++ A+ Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 A++ + I +V+ + KT + + + Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAK 189 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P + L V+ +N+ + Sbjct: 190 NSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSK-IVKAFRNLPGVELCHVERLNLLKLAP 248 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270 >gi|79313167|ref|NP_001030663.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] Length = 405 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 60/262 (22%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 ++++ LDG+ D+ V D+ + I+ V S R + SK + Sbjct: 10 VTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSA 69 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + ++ A+ Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 A++ + I +V+ + KT + + + Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAK 189 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P + L V+ +N+ + Sbjct: 190 NSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSK-IVKAFRNLPGVELCHVERLNLLKLAP 248 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270 >gi|167395471|ref|XP_001741540.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760] gi|167396309|ref|XP_001742003.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760] gi|167539804|ref|XP_001741360.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760] gi|165893200|gb|EDR21540.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760] gi|165893876|gb|EDR21994.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760] gi|165894061|gb|EDR22145.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760] Length = 431 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 56/239 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVAYTG----SKMYVQKGTGR 72 +F + ++ V R QS R K S +++ +++ G+G Sbjct: 25 PAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAISWGTGRAVARIPRISGSGS 84 Query: 73 ARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHALSDKFCSNDI------- 123 R+ + G F P PK++R A+ ++ + Sbjct: 85 GRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHI 144 Query: 124 -------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---------------------- 152 +V+++ KTK V + ++ S+ L Sbjct: 145 AGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKE 204 Query: 153 ----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALE 203 ++ D A RNIP ++ V+ ++V ++ + ++ ++SA + L Sbjct: 205 RKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWTESAFKKLN 263 >gi|322703514|gb|EFY95122.1| 60S ribosomal protein L4, putative [Metarhizium anisopliae ARSEF 23] Length = 351 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ DG G +F + I+ RV + KR + S + +E Sbjct: 5 PTVSIIGKDGAPTGATHPVPAVFTSPIRPDIVQRVHTGMAKNKRQPYAVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRYATC 124 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKEC---KTKYLVTRFRALD----LSN 150 AL+ + + +V+D+ V +T + +A+ L Sbjct: 125 SALAASAAAPLLMARGHEIMTVAEVPLVVDSAVFDSAAVSRTAPALALLKAVGAGPDLEK 184 Query: 151 A------------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 A L++ ++D + A RNIP + PV +N+ Sbjct: 185 AKNSKKLRAGKGKLRGRRHRQRRGPLVVYNPEVDGKELVKAFRNIPGVETSPVSALNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA +AL+D + Sbjct: 245 LAPGGHLGRFIVWTSSAFKALDDIY 269 >gi|37779080|gb|AAP20200.1| ribosomal protein L4 [Pagrus major] Length = 367 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + ++ V R + S + +E Sbjct: 8 ISVYSEKGETAGKNVVMPAVFKAPIRPDVVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 114 ----------LSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+++ V KTK L+ + +A + + Sbjct: 128 VAASAIPALVMSKGHRIEEIPEVPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I L V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNQDAGVTKAFRNIPGITLQNVNKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|317148273|ref|XP_001822664.2| 60S ribosomal protein L4-B [Aspergillus oryzae RIB40] Length = 407 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ +G+ G + +F + ++ +V + KR + S + +E Sbjct: 40 PTVTIATAEGKPSGATAPLPAVFNAPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 99 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P L + A Sbjct: 100 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKLNLNQKRFATA 159 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRALDLSN---- 150 AL+ + V+++ + KTK VT +AL + Sbjct: 160 SALAASSVPALLFARGHRVANVPEVPLVVESKTFENAALTKTKAAVTLLKALGAGDDLVK 219 Query: 151 ------------------------ALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RNIP + PV +N+ Sbjct: 220 VAKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSPVFALNLLQ 279 Query: 186 ILRCSK----LVLSKSAIEALEDRF 206 + +V + SA EAL+ F Sbjct: 280 LAPGGHLGRFVVWTSSAFEALDQVF 304 >gi|21593543|gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana] Length = 406 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 60/262 (22%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 ++++ LDG+ D+ V D+ + I+ V S R + SK + Sbjct: 10 VTIQTLDGDISTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSA 69 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + ++ A+ Sbjct: 70 ESCGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 A++ + I +V+ + KT + + + Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAK 189 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P + L V+ +N+ + Sbjct: 190 NSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSK-IVKAFRNLPGVELCHVERLNLLKLAP 248 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270 >gi|48477713|ref|YP_023419.1| 50S ribosomal protein L4P [Picrophilus torridus DSM 9790] gi|48430361|gb|AAT43226.1| large subunit ribosomal protein L1E [Picrophilus torridus DSM 9790] Length = 254 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 71/264 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ ++ +L+GE KG I + IF ++P++ IL R + R S + + G Sbjct: 1 MKANIYDLNGEIKGEIEL-PKIFEIRPREDILREAFRAITLSYRQPYGASPD-AGMRRVG 58 Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAF----------GPVPIIG---VHALPKKVRSL 108 + H + + GG +A P + K+ R L Sbjct: 59 QNLGPN-------HGISRIPRLAGGSRAVLLGSVVGGKSAHAPRSDKVLYKKINKRERKL 111 Query: 109 ALRHALSDKFCSNDIM----------------VIDNLVSKECKTKYLVTRFRALDL---- 148 A A++ I+ ++ N + K KT+ V F+ L L Sbjct: 112 ARFTAIALTASREHIIKRGHRIDEDSNLTFPVIVTNDLEKIKKTRDAVEFFKKLGLYDDI 171 Query: 149 -----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 +L+I G D A ++P +++ +++ Sbjct: 172 LRSKENKKIRPGRGKMRNRTYKQPKSLLIVGTSYDN--LKAFSSLPGVDIATPSSLSIRK 229 Query: 186 IL---RCSKL-VLSKSAIEALEDR 205 + +L + ++SAI +L++ Sbjct: 230 LAPGGTGGRLTIFTESAISSLKEV 253 >gi|321262877|ref|XP_003196157.1| 60s ribosomal protein L4-B [Cryptococcus gattii WM276] gi|317462632|gb|ADV24370.1| 60s ribosomal protein L4-B, putative [Cryptococcus gattii WM276] Length = 363 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 87/262 (33%), Gaps = 59/262 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + GE G + + +F + ++ +V + + +R + + + +E Sbjct: 5 PTVTVWSATGESSGSLPL-PAVFTAPIRLDVVQQVHKSIAKNRRQAYAVAENAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G G R + GG+ F P + + R Sbjct: 64 SWGTGRAVARIPRVGGGGTQRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRYAVA 123 Query: 109 -------ALRHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL----DLSNA-- 151 L+ I +V+ + + KTK V + + D+S Sbjct: 124 SALAASALPSLVLARGHRIEQIQEVPLVLSSSIESTDKTKAAVELLKTVAAYPDISKVSN 183 Query: 152 ----------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 L++ D A +N+P + PV+ +N+ + Sbjct: 184 SRKIRAGKGKMRNRRYRQRRGPLVV--YAKDEGIVRAFKNVPGVETCPVESLNLLQLAPG 241 Query: 190 SKL----VLSKSAIEALEDRFK 207 + + ++SAI AL+ ++ Sbjct: 242 GHVGRFIIWTESAIAALDSVYE 263 >gi|58259908|ref|XP_567364.1| Ras2 [Cryptococcus neoformans var. neoformans JEC21] gi|134116412|ref|XP_773160.1| hypothetical protein CNBJ1550 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255781|gb|EAL18513.1| hypothetical protein CNBJ1550 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229414|gb|AAW45847.1| Ras2, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 363 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 59/262 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + GE G + + +F + ++ +V + + +R + + + +E Sbjct: 5 PTVTVWSATGEASGSLPL-PAVFTAPIRLDVVQQVHKSIAKNRRQAYAVAENAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G G R + GG+ F P + + R Sbjct: 64 SWGTGRAVARIPRVGGGGTQRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRYAVA 123 Query: 109 -------ALRHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL----DLSNA-- 151 L+ I +V+ + V KTK V + + D+S Sbjct: 124 SALAASALPSLVLARGHRIEQIQEVPLVLSSSVESTEKTKAAVELLKTVAAYPDISKVSN 183 Query: 152 ----------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 L++ D A +N+P + PV+ +N+ + Sbjct: 184 SRKIRAGKGKMRNRRYRQRRGPLVV--YAKDEGIVRAFKNVPGVETCPVESLNLLQLAPG 241 Query: 190 SKL----VLSKSAIEALEDRFK 207 + + ++SAI AL+ ++ Sbjct: 242 GHVGRFIIWTESAIAALDSVYE 263 >gi|15242558|ref|NP_195907.1| 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] gi|20143905|sp|P49691|RL4B_ARATH RecName: Full=60S ribosomal protein L4-2; AltName: Full=L1 gi|7413562|emb|CAB86041.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|15450798|gb|AAK96670.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|16649033|gb|AAL24368.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|17064752|gb|AAL32530.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|20260072|gb|AAM13383.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|21387109|gb|AAM47958.1| 60S ribosomal protein-like protein [Arabidopsis thaliana] gi|22530964|gb|AAM96986.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|25083642|gb|AAN72099.1| 60S ribosomal protein-like [Arabidopsis thaliana] gi|332003146|gb|AED90529.1| 60S ribosomal protein L4-2 [Arabidopsis thaliana] Length = 407 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54 ++V+ LDG+ +++ + + + I+ V S R + SK Sbjct: 11 VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + ++ A Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 + A++ + I +V+ + KT + + + Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189 Query: 148 --------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L++ G + A RN+P + L V+ +N+ + Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEG-AKIVKAFRNLPGVELCHVERLNLLKLA 248 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIY 271 >gi|186519603|ref|NP_001119159.1| 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] gi|332003147|gb|AED90530.1| 60S ribosomal protein L4-2 [Arabidopsis thaliana] Length = 406 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54 ++V+ LDG+ +++ + + + I+ V S R + SK Sbjct: 11 VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + ++ A Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 + A++ + I +V+ + KT + + + Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189 Query: 148 --------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L++ G + A RN+P + L V+ +N+ + Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEG-AKIVKAFRNLPGVELCHVERLNLLKLA 248 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIY 271 >gi|183231989|ref|XP_001913650.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS] gi|169802255|gb|EDS89578.1| 60S ribosomal protein L4, putative [Entamoeba histolytica HM-1:IMSS] Length = 431 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 56/239 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVAYTG----SKMYVQKGTGR 72 +F + ++ V R QS R K S +++ +++ G+G Sbjct: 25 PAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAISWGTGRAVARIPRISGSGS 84 Query: 73 ARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHALSDKFCSNDI------- 123 R+ + G F P PK++R A+ ++ + Sbjct: 85 GRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHI 144 Query: 124 -------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---------------------- 152 +V+++ KTK V + ++ S+ L Sbjct: 145 AGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKE 204 Query: 153 ----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALE 203 ++ D A RNIP ++ V+ ++V ++ + ++ ++SA + L Sbjct: 205 RKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWTESAFKKLN 263 >gi|167392486|ref|XP_001740178.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760] gi|165895856|gb|EDR23445.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760] Length = 431 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 56/239 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVAYTG----SKMYVQKGTGR 72 +F + ++ V R QS R K S +++ +++ G+G Sbjct: 25 PAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAISWGTGRAVARIPRISGSGS 84 Query: 73 ARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHALSDKFCSNDI------- 123 R+ + G F P PK++R A+ ++ + Sbjct: 85 GRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVVSCIAASAVPALVSARGHHI 144 Query: 124 -------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---------------------- 152 +V+++ KTK V + ++ S+ L Sbjct: 145 AGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKE 204 Query: 153 ----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALE 203 ++ D A RNIP ++ V+ ++V ++ + ++ ++SA + L Sbjct: 205 RKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWTESAFKKLN 263 >gi|212275964|ref|NP_001130508.1| hypothetical protein LOC100191607 [Zea mays] gi|195619738|gb|ACG31699.1| 60S ribosomal protein L4 [Zea mays] Length = 404 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 61/262 (23%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++VR L+G+ D + +++ + + I+ V + S R + S + + Sbjct: 9 VTVRALEGDMATDSAGVPLAD-VLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAI 127 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 ALS + + +V+ + KT + + L Sbjct: 128 ASALSATAVPSLVLARGHRVESVPELPLVVSDSAESIEKTAQAINILKQLGAYADAEKAK 187 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P +++ V+ +N+ D+ Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLAP 246 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ ++ A + L++ + Sbjct: 247 GGHLGRFVIWTECAFKKLDEVY 268 >gi|323452815|gb|EGB08688.1| hypothetical protein AURANDRAFT_60076 [Aureococcus anophagefferens] Length = 379 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 77/266 (28%), Gaps = 61/266 (22%) Query: 1 MIE----LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KS 51 M E +SV + +G + +F + ++ V + R + Sbjct: 1 MAETRPVVSVYSPEGAVASTTPL-PAVFNAPIRPDLVRFVHTNIAKNARQAYAVNMKAGH 59 Query: 52 KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVR 106 + +E TG ++ +G G R + GG+ F P + R Sbjct: 60 QTSAESWGTGRAVSRIPRVQGGGTQRSGQGAFGNMCRGGRMFAPTKTWRKWHRKVNLNER 119 Query: 107 SL---------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--- 148 R + D ++V ++ KTK V +AL Sbjct: 120 RYAICSAIAASACPPLVMARGHVVDAVPEMPLVVDGSVEGSVAKTKAAVALLKALGAEAD 179 Query: 149 ------SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 S L ++ D A RN+P ++L + +N+ Sbjct: 180 ADKCAASKKLRAGKGKMRNRRYVGRKGPLVIYEDKDAELPRAVRNLPGVDLCHIDRLNLL 239 Query: 185 DILRCSKL----VLSKSAIEALEDRF 206 + + V + A L+ + Sbjct: 240 LLAPGGHVGRFCVWTSGAFAKLDALY 265 >gi|194689338|gb|ACF78753.1| unknown [Zea mays] gi|224031407|gb|ACN34779.1| unknown [Zea mays] Length = 404 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 61/262 (23%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++VR L+G+ D + +++ + + I+ V + S R + S + + Sbjct: 9 VTVRALEGDMATDSAGVPLAD-VLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAI 127 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 ALS + + +V+ + KT + + L Sbjct: 128 ASALSATAVPSLVLARGHRVESVPELPLVVSDSAESIEKTAQAINILKQLGAYADAEKAK 187 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + + A RN+P +++ V+ +N+ D+ Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLAP 246 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ ++ A + L++ + Sbjct: 247 GGHLGRFVIWTECAFKKLDEVY 268 >gi|238503079|ref|XP_002382773.1| 60S ribosomal protein L4, putative [Aspergillus flavus NRRL3357] gi|83771399|dbj|BAE61531.1| unnamed protein product [Aspergillus oryzae] gi|220691583|gb|EED47931.1| 60S ribosomal protein L4, putative [Aspergillus flavus NRRL3357] Length = 372 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ +G+ G + +F + ++ +V + KR + S + +E Sbjct: 5 PTVTIATAEGKPSGATAPLPAVFNAPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P L + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKLNLNQKRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRALDLSN---- 150 AL+ + V+++ + KTK VT +AL + Sbjct: 125 SALAASSVPALLFARGHRVANVPEVPLVVESKTFENAALTKTKAAVTLLKALGAGDDLVK 184 Query: 151 ------------------------ALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RNIP + PV +N+ Sbjct: 185 VAKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSPVFALNLLQ 244 Query: 186 ILRCSK----LVLSKSAIEALEDRF 206 + +V + SA EAL+ F Sbjct: 245 LAPGGHLGRFVVWTSSAFEALDQVF 269 >gi|67474022|ref|XP_652760.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS] gi|56469645|gb|EAL47374.1| 60S ribosomal protein L4, putative [Entamoeba histolytica HM-1:IMSS] Length = 431 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 56/239 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRI----GCSKSKGRSEVAYTG----SKMYVQKGTGR 72 +F + ++ V R QS R K S +++ +++ G+G Sbjct: 25 PAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAISWGTGRAVARIPRISGSGS 84 Query: 73 ARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHALSDKFCSNDI------- 123 R+ + G F P PK++R A+ ++ + Sbjct: 85 GRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHI 144 Query: 124 -------MVIDNLVSKEC-KTKYLVTRFRALD-LSNAL---------------------- 152 +V+++ KTK V + ++ S+ L Sbjct: 145 AGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKE 204 Query: 153 ----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALE 203 ++ D A RNIP ++ V+ ++V ++ + ++ ++SA + L Sbjct: 205 RKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLN 263 >gi|19112671|ref|NP_595879.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe 972h-] gi|15214260|sp|Q9P784|RL4B_SCHPO RecName: Full=60S ribosomal protein L4-B gi|7630164|emb|CAB88236.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe] Length = 363 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ N DG +F + ++ V + KR + S + +E Sbjct: 6 PTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A+ Sbjct: 66 SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIA 125 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V+D+ V KTK V + + Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 S L ++ + D A RNIP + ++ V+ +N+ + Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNE-DTGIVKAFRNIPGVEIVNVRRLNLLQLAPGG 244 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ +KSA L+ F Sbjct: 245 HLGRFVIWTKSAFGLLDSVF 264 >gi|72005577|ref|XP_783473.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115955810|ref|XP_001190853.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 385 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 54/253 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V N E G +F + I+ R + + +E Sbjct: 10 VTVYNEKNEVTGTNVTLPAVFKAPIRPDIVNYAHTNMRKNSRQPYAVKRIAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKIWRKWHTRTNISQKRFAMCSA 129 Query: 114 LSDKF------CSNDIM--------VIDNLVSKECKTK---YLVTRFRALDLSNALI--- 153 L+ ++ V+ + V KTK Y + RF+A + + Sbjct: 130 LAASAVPALVMSKGHMIMGTPEVPLVVSDKVQDFKKTKEAVYFLKRFKAWEDIKKVYKSR 189 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + D A RNIP + LL V +N+ + + Sbjct: 190 RMRAGKGKMRNRRFVRRLGPLVVYDQDNGITRAFRNIPGVTLLQVSRLNLLRLAPGGHVG 249 Query: 193 ---VLSKSAIEAL 202 V ++SA L Sbjct: 250 RFCVWTESAFNKL 262 >gi|241567444|ref|XP_002402322.1| ribosomal protein L4, putative [Ixodes scapularis] gi|215500018|gb|EEC09512.1| ribosomal protein L4, putative [Ixodes scapularis] Length = 417 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 84/262 (32%), Gaps = 64/262 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 ++V N E G +F + I+ V S R + SK +E Sbjct: 10 VNVYNDKNELSGTHVALPAVFKAPIRPDIVNFVHVNMSKNNRQPYAVSKEAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRRINVAQKRYAICSA 129 Query: 114 ----------LSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL----DLSNA---- 151 LS +I +V+ + + KTK V + + D+ Sbjct: 130 VAATGVPGLVLSKGHKIEEIPEVPLVVSDKIQDLKKTKEAVLFLKKVKAWTDVEKVYKSR 189 Query: 152 --------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC-- 189 L++ + D A RNIP ++ L V +N +L+ Sbjct: 190 RLRAGKGKMRNRRRIQRLGPLVV--FEADNGITRAFRNIPGVDTLRVDKLN---LLKMAP 244 Query: 190 ----SKLVL-SKSAIEALEDRF 206 + V+ ++SA L+ + Sbjct: 245 GGHVGRFVIWTESAFRRLDKLY 266 >gi|74000602|ref|XP_866420.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 7 [Canis familiaris] Length = 295 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|312177|emb|CAA51666.1| ribosomal protein L2 [Schizosaccharomyces pombe] Length = 357 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ N DG +F + ++ V + KR + S + +E Sbjct: 6 PTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G +R + G+ F + + + A Sbjct: 66 SWGTGRALARIPRVGGGGTSRSGQAAFGNMCRSGRMFASTKTWRKWHVKVNQNEKRYATC 125 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V+D+ V KTK V + + Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 S L ++ + D A RNIP + ++ V+ +N+ + Sbjct: 186 SRKLRAGKGKLANRRHVQRRGPLVVFNE-DAGIVKAFRNIPGVEIVNVRRLNLLQLAPGG 244 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ +KSA L+ F Sbjct: 245 HLGRFVIWTKSAFGLLDSVF 264 >gi|114657762|ref|XP_001174724.1| PREDICTED: similar to ribosomal protein isoform 1 [Pan troglodytes] Length = 477 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 58 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 117 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 118 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 177 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 178 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 237 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 238 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 295 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 296 VGRFCIWTESAFRKLDELY 314 >gi|146417697|ref|XP_001484816.1| hypothetical protein PGUG_02545 [Meyerozyma guilliermondii ATCC 6260] gi|146390289|gb|EDK38447.1| hypothetical protein PGUG_02545 [Meyerozyma guilliermondii ATCC 6260] Length = 362 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++SV + GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVSVISTKGEQTSTQVALPSVFSAPVRPDIVHSVFVKVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNIKVNHNEKRYATA 123 Query: 112 HALS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 A++ ++ ++V D S KTK V +A+ ++ Sbjct: 124 SAIAASAVTSLVLARGHRVEQVKELPLVVADEFESVT-KTKEAVAVLKAVGAHKDVVKVL 182 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 + D A RNIP + V+ + + + Sbjct: 183 KSKKLRAGKGKLRGRRFTQRRGPLVVYAKDNGLTKALRNIPGVETSDVKHLGLLQLAPGA 242 Query: 188 RCSKLVL-SKSAIEALEDRF 206 + V+ ++SAIE+L+ + Sbjct: 243 HLGRFVIWTQSAIESLDSIY 262 >gi|318068006|ref|NP_001187034.1| ribosomal protein L4 [Ictalurus punctatus] gi|15293869|gb|AAK95127.1|AF401555_1 ribosomal protein L4 [Ictalurus punctatus] Length = 385 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + ++ V KR + S + +E Sbjct: 8 ISVYSDKGETSGKNVVLPAVFTAPIRPDVVNFVHTNMRKNKRHAYAVSEQAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINVTQKRYAICSA 127 Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ + I +V+D+ V KTK L+ + +A + + Sbjct: 128 LAGSALPALVMAKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP + + V +N+ + Sbjct: 188 RMRAGKGKMRNGRRIQRKGPCII--YNEDNGVTKAFRNIPGVTMQRVTKLNLLKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + +++A L+D + Sbjct: 246 IGRFCIWTEAAFRKLDDLY 264 >gi|255715761|ref|XP_002554162.1| KLTH0E15686p [Lachancea thermotolerans] gi|238935544|emb|CAR23725.1| KLTH0E15686p [Lachancea thermotolerans] Length = 363 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 54/259 (20%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++SV L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVSVHGLTGETSSSSVALPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSDKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 L+ I +V+ N + KTK V +A+ + ++ Sbjct: 124 SAIAASAVASLVLARGHRVEKIPEIPLVVSNDLESVKKTKEAVAALKAVGAHSDVVKVLK 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188 + D A RN+P + V +++ + Sbjct: 184 SKKMRAGKGKYRNRRFTQRRGPLVVYAEDNGIVKAFRNLPGVETANVASLSLLQLAPGAH 243 Query: 189 CSKLVL-SKSAIEALEDRF 206 + V+ ++SA L+ + Sbjct: 244 MGRFVIWTESAFAKLDQVW 262 >gi|26450328|dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana] Length = 407 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 62/263 (23%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54 ++V+ LDG+ +++ + + + I+ V S R + SK Sbjct: 11 VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + ++ A Sbjct: 70 AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 + A++ + I +V+ + KT + + + Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189 Query: 148 --------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 L++ G + A RN+P + L V+ +N+ + Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEG-AKIVKAFRNLPGVELCHVERLNLLKLA 248 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIY 271 >gi|311245330|ref|XP_003121789.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L4 [Sus scrofa] Length = 512 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 93 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 152 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 153 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 212 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 213 LAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 272 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 273 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 330 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 331 VGRFCIWTESAFRKLDELY 349 >gi|328849864|gb|EGF99037.1| hypothetical protein MELLADRAFT_50803 [Melampsora larici-populina 98AG31] Length = 377 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 53/230 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++VR+ G G + + +F + + ++A + + + R + S + +E Sbjct: 7 VNVRSPAGASSGTVPL-PAVFTVPIRNDVIAAIHKNLAKNNRQPYAVSSKAGEQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG+ F P K R A A Sbjct: 66 GTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRKWHVKTNLKQRRYATVSA 125 Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGC 157 ++ +K ++V D + S + KT+ +AL + L + Sbjct: 126 IAATAVPSLVLARGHRIEKVQEIPLVVSDEIESLQ-KTRDAANVLKALAAQPDVLKVSSS 184 Query: 158 Q-------------------------LDRNFQLAARNIPNINLLPVQGIN 182 + D+ A RN+P + ++ V +N Sbjct: 185 RTMRAGKGKMRGRRYRQRRGPLIIYNEDKGITRAFRNLPGVEIISVHRLN 234 >gi|119598180|gb|EAW77774.1| ribosomal protein L4, isoform CRA_b [Homo sapiens] Length = 477 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 58 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 117 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 118 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 177 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 178 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 237 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 238 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 295 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 296 VGRFCIWTESAFRKLDELY 314 >gi|226497070|ref|NP_001147047.1| 60S ribosomal protein L4 [Zea mays] gi|195606864|gb|ACG25262.1| 60S ribosomal protein L4 [Zea mays] Length = 404 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 63/263 (23%) Query: 4 LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +SV+ L+G+ I++ +F + ++ + S KR + S + + Sbjct: 9 VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNVNLRRVAV 127 Query: 111 RH--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145 AL + + I +VI + KT + + Sbjct: 128 ASALAATAVPAL-VQARGHRIETVPEMPLVISDSAESIEKTSQALKILKQVGAYTDAEKA 186 Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ L++ G + + A RN+P +++ V+ +N+ D+ Sbjct: 187 KDSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLA 245 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + LE+ + Sbjct: 246 PGGHLGRFVIWTESAFKKLEEVY 268 >gi|194704098|gb|ACF86133.1| unknown [Zea mays] Length = 404 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 63/263 (23%) Query: 4 LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +SV+ L+G+ I++ +F + ++ + S KR + S + + Sbjct: 9 VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNVNLRRVAV 127 Query: 111 RH--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145 AL + + I +VI + KT + + Sbjct: 128 ASALAATAVPAL-VQARGHRIETVPEMPLVISDSAESIEKTSQALKILKQVGAYADAEKA 186 Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 ++ L++ G + + A RN+P +++ V+ +N+ D+ Sbjct: 187 KDSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLA 245 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA + LE+ + Sbjct: 246 PGGHLGRFVIWTESAFKKLEEVY 268 >gi|124506063|ref|XP_001351629.1| 60S ribosomal protein L4, putative [Plasmodium falciparum 3D7] gi|23504556|emb|CAD51436.1| 60S ribosomal protein L4, putative [Plasmodium falciparum 3D7] Length = 411 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 56/253 (22%) Query: 5 SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +V + +G++ G + + +F + ++ V S +R + +E Sbjct: 9 NVYSTNGKNVVGEVEI-PVVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAGYETSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG F P + K + A+ + Sbjct: 68 GTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKEKRYAVCSS 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---NALI--- 153 ++ + I +V+ N + KTK V +L L N L+ Sbjct: 128 IAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDEVNRLVKSK 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + + D + A RNIP ++L V +N+ + + Sbjct: 188 KIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLKLAPGGSIG 247 Query: 193 ---VLSKSAIEAL 202 + S+SA + L Sbjct: 248 RLCIWSESAFKKL 260 >gi|327353288|gb|EGE82145.1| 60S ribosomal protein L4-A [Ajellomyces dermatitidis ATCC 18188] Length = 482 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 115 PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 174 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 175 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 234 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK + L Sbjct: 235 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 294 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 295 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDVDGKELVKAFRNIPGVETCPVFALN 351 >gi|326926873|ref|XP_003209621.1| PREDICTED: 60S ribosomal protein L4-like [Meleagris gallopavo] Length = 325 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 86/260 (33%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + GE G +++ +F + ++ V R + S + +E Sbjct: 55 ISVYSEKGEASGKNVTL-PAVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAES 113 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 114 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICS 173 Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL--- 152 +S +I +V+++ V KTK L+ + +A + + Sbjct: 174 ALAASALPALVMSKGHRIEEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYAS 233 Query: 153 ----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 II D A RNIP I LL V +N+ + Sbjct: 234 QRMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGG 291 Query: 191 KL----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 292 HVGRFCIWTESAFRKLDDLY 311 >gi|316974003|gb|EFV57544.1| eukaryotic translation initiation factor 1A [Trichinella spiralis] Length = 234 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116 + G K + QKGTGRARH S + G F + L K + L+ Sbjct: 1 MPGGGRKPWPQKGTGRARHGSIRSPIWIRGLNCFSMLKHE-TLVLSKDALIYLQKRILAQ 59 Query: 117 KFCSNDI 123 + + + Sbjct: 60 LYRAESL 66 Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 20/30 (66%) Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + ++G+N + +L+ LVLSK A+ L+ R Sbjct: 26 IWIRGLNCFSMLKHETLVLSKDALIYLQKR 55 >gi|225557039|gb|EEH05326.1| 60S ribosomal protein [Ajellomyces capsulatus G186AR] Length = 372 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 71/237 (29%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 5 PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK + + L Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDSIAKTKAAIALLKNLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 185 VEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALN 241 >gi|291334062|gb|ADD93735.1| ribosomal protein L4/L1 family [uncultured marine bacterium MedDCM-OCT-S05-C114] Length = 84 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++VI++ KTK L + S +++ + + N LA RN+ L + Sbjct: 1 MIVIEDFSIDSPKTKLLNGVITKIAPDSKKVLLVSDEHNDNTSLAGRNLSYARLSSTPDL 60 Query: 182 NVYDILRCSKLVLSKSAIEALED 204 DI++ K++ S I++L + Sbjct: 61 GPVDIVQADKIIFSVKGIDSLLE 83 >gi|170035401|ref|XP_001845558.1| 60S ribosomal protein L4 [Culex quinquefasciatus] gi|167877374|gb|EDS40757.1| 60S ribosomal protein L4 [Culex quinquefasciatus] Length = 436 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +S+ E +++ +F + +++ V + +R + S + +E Sbjct: 10 VSIYTEKNEAVKDKNIALPYVFKAPIRPDVVSEVSQLMRRNRRQPYAVSEAAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + ++ AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + VID L V +F+ + A + Sbjct: 130 AIAASGVPALVQSRGHVIDGLSELPLVVSDDVQKFQKTKQAVAFLRRSKVWADVQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP ++ + V +N+ + + Sbjct: 190 QRLRAGRGKMRNRRRVQRRGPLVIYAKDEGLRKAFRNIPGVDTMKVTRLNLLKLAPGGHV 249 Query: 193 ----VLSKSAIEALEDRF 206 V ++SA L + + Sbjct: 250 GRLCVWTESAFAQLNEIY 267 >gi|297829496|ref|XP_002882630.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] gi|297328470|gb|EFH58889.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] Length = 406 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 60/262 (22%) Query: 4 LSVRNLDGE---DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 ++V+ LDG+ D+ V D+ + I+ V S R + SK + Sbjct: 10 VTVQVLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSA 69 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + ++ A+ Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------- 147 A++ + I +V+ + KT + + + Sbjct: 130 VSAIAATAVPSLVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAK 189 Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 L++ G + A RN+P + L V+ +N+ + Sbjct: 190 DSIGIRPGKGKMRNRRYISRKGPLVVYGTEG-AKIVKAFRNLPGVELCHVERLNLLKLAP 248 Query: 189 CSKL---VL-SKSAIEALEDRF 206 L V+ +KSA E LE + Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270 >gi|154285254|ref|XP_001543422.1| 60S ribosomal protein L4-A [Ajellomyces capsulatus NAm1] gi|150407063|gb|EDN02604.1| 60S ribosomal protein L4-A [Ajellomyces capsulatus NAm1] Length = 372 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 5 PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK +T + L Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDSIAKTKAAITLLKNLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 185 VEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALN 241 >gi|325093673|gb|EGC46983.1| 60S ribosomal protein [Ajellomyces capsulatus H88] Length = 372 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 5 PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK +T + L Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDSIAKTKAAITLLKNLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 185 VEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALN 241 >gi|19113302|ref|NP_596510.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe 972h-] gi|19858781|sp|P35679|RL4A_SCHPO RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2 gi|3810827|emb|CAA21788.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe] Length = 363 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ + DG +F + ++ V + KR + S + +E Sbjct: 6 PTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A+ Sbjct: 66 SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIS 125 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + I +V+D+ V KTK V + + Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVAN 185 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 S L ++ + D A RNIP + ++ V+ +N+ + Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNE-DAGIVKAFRNIPGVEIVNVRRLNLLQLAPGG 244 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ +KSA L+ F Sbjct: 245 HLGRFVIWTKSAFGLLDSVF 264 >gi|296212254|ref|XP_002752764.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus] Length = 437 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCHGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLV---TRFRALDLSNAL---- 152 +S ++ +V+++ V KTK V + +A + + Sbjct: 128 LAASALPALVMSKGHRVEEVPELPLVVEDKVEGYKKTKEAVLILKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRASKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSQLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|256762005|ref|ZP_05502585.1| predicted protein [Enterococcus faecalis T3] gi|256683256|gb|EEU22951.1| predicted protein [Enterococcus faecalis T3] Length = 62 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 36/61 (59%) Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 + + +++ + L+ARN+PN++++ ++V D++ +K++ +++A+ +E+ Sbjct: 1 MSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALTQIEEV 60 Query: 206 F 206 Sbjct: 61 L 61 >gi|74000604|ref|XP_866430.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 8 [Canis familiaris] Length = 309 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|40889023|gb|AAA60281.2| ribosomal protein L4 [Homo sapiens] Length = 426 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 57/258 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + ++ V R + S + R+E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSELAGHQTRAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S + +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEFPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 --------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 II D A RNIP I LL V +N+ + + Sbjct: 188 RMRAGKGKMRNRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 245 Query: 193 ----VLSKSAIEALEDRF 206 + ++SA L++ + Sbjct: 246 GRFCIWTESAFRKLDELY 263 >gi|324513506|gb|ADY45549.1| 60S ribosomal protein L4 [Ascaris suum] Length = 505 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 54/253 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V N E +F + I+ + KR + S + +E Sbjct: 163 VTVYNEKNEPTETQIKLPGVFRAPIRPDIVNFIHDQIRKNKRQPYAVSTEAGHQTSAESW 222 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 223 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVYRRWHRRVNVAQKRYAIVSA 282 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRF---------------- 143 L+ I+ V+ + + KT+ VT Sbjct: 283 LAASGVPGLVQARGHIIDQIPEVPFVVTDKIEAFRKTREAVTFLRRSHVWADIEKVYNSK 342 Query: 144 ---------RALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 R + L + D A RNIP ++L V +N+ I Sbjct: 343 RYRAGKGKGRNRRYKSKLGPVVVYSQDNGVVKAFRNIPGVDLQCVDRLNLLKIAPGGHMG 402 Query: 191 KLVL-SKSAIEAL 202 +L++ ++SA L Sbjct: 403 RLIIWTESAFRKL 415 >gi|119719147|ref|YP_919642.1| 50S ribosomal protein L4P [Thermofilum pendens Hrk 5] gi|119524267|gb|ABL77639.1| LSU ribosomal protein L4P [Thermofilum pendens Hrk 5] Length = 267 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 94/258 (36%), Gaps = 59/258 (22%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRSE- 56 E+ V +L+G I + F + ++ RV + G + + +E Sbjct: 10 EVPVYDLNGAAVERIKL-PSFFKSPVRPDLIRRVYIALFTSRLQPKGTDPLAGLRTTAES 68 Query: 57 --VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 V + +++ KG RA V Q G +A P I + +K + AL A Sbjct: 69 LGVGHGIARVARIKGGLRA----ARVVQAVKGRRAHPPRVEKIIREEVNRKEKRKALLSA 124 Query: 114 LSDKFCSN----DIMVIDNLVSKECKTKYLVTRFRALDLS-------------------- 149 L+ + V+ ++ L + +A DL Sbjct: 125 LAAVASRDFVLKRGHVVPDIPLPVVVADDLESISKARDLRAFLEKLGLWKDVERAQTNTR 184 Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 +L+I + R +LAARN+P ++++ + ++V + Sbjct: 185 VRAGKGKMRGRRYKKPKSLLIVVGEA-RGIELAARNMPGVDVVTYKELSVLHLAPGGNPG 243 Query: 191 KL-VLSKSAIEALEDRFK 207 +L V +KSA++ LE+R K Sbjct: 244 RLTVFTKSAVKGLEERLK 261 >gi|156062570|ref|XP_001597207.1| 60S ribosomal protein L4 [Sclerotinia sclerotiorum 1980] gi|154696737|gb|EDN96475.1| 60S ribosomal protein L4 [Sclerotinia sclerotiorum 1980 UF-70] Length = 373 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +SV + DG G +F + I+ V + KR + S + +E Sbjct: 5 PTVSVLSADGTATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATV 124 Query: 112 HALSD------KFCSNDIM--------VIDNLVSKEC------------KTKYLVTRFRA 145 AL+ F + VI++ V + KT + Sbjct: 125 SALAASGVPALLFARGHQISEVAEVPLVINSEVFEGAKIARTAAAAGLLKTVGALKDVEK 184 Query: 146 LDLSNAL--------------------IIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 + S L + DG + A RN+P + V +N Sbjct: 185 VKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKELVRAFRNLPGVETCDVYSLN 241 >gi|297745940|emb|CBI15996.3| unnamed protein product [Vitis vinifera] Length = 99 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 +D + ++ N +L++RNI + +L + +N++DIL KLVL++ ++ L Sbjct: 5 GIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLVLTQETVDYLNR 64 Query: 205 RF 206 + Sbjct: 65 MY 66 >gi|297806223|ref|XP_002870995.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] gi|297316832|gb|EFH47254.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] Length = 407 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 58/255 (22%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62 ++ + +++ + + + I+ V S R + SK +E TG Sbjct: 19 DMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGR 77 Query: 63 ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD- 116 ++ G G R + GG+ F P + ++ A+ A++ Sbjct: 78 AVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAAT 137 Query: 117 ------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD---------------- 147 + I +V+ + KT + + + Sbjct: 138 AVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRP 197 Query: 148 ------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 L++ G + A RN+P + L V+ +N+ + L Sbjct: 198 GKGKMRNRRYISRKGPLVVYGTEG-AKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRF 256 Query: 193 VL-SKSAIEALEDRF 206 V+ +KSA + LE + Sbjct: 257 VIWTKSAFDKLESIY 271 >gi|242018771|ref|XP_002429847.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis] gi|212514865|gb|EEB17109.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis] Length = 671 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 87/262 (33%), Gaps = 64/262 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V N E G V +F + ++ V + KR + + +E Sbjct: 10 VTVYNDKNESTGTTIVLPSVFKAPIRPDVVNFVHDQMAKNKRQPYCVSEKAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + + RGG A P + R A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMASPTKPWRRWHRKINLNQRRYAMVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA---- 151 L+ ++ VI + + + KTK V R + D+ Sbjct: 130 LAASGVPALVMSKGHMINEIPELPLVISDKIQEYTKTKQAVVFLRRIKAWKDIEKVYKSR 189 Query: 152 --------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 LI+ ++ + A RNIP ++L+ V + D+L+ Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIV--YSKNQGIRRAFRNIPGVDLINVSKL---DLLKVAP 244 Query: 189 ----CSKLVLSKSAIEALEDRF 206 ++ ++SA + L + Sbjct: 245 GGHVGRFVIWTESAFKTLNALY 266 >gi|293332597|ref|NP_001168309.1| hypothetical protein LOC100382075 [Zea mays] gi|223947375|gb|ACN27771.1| unknown [Zea mays] Length = 403 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 90/263 (34%), Gaps = 63/263 (23%) Query: 4 LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +SV+ L+G+ I++ +F + ++ + S KR + S + + Sbjct: 9 VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + +R +A+ Sbjct: 68 ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNINLRRVAV 127 Query: 111 RH--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 AL + + I +VI + KT + + + Sbjct: 128 ASALAATAVPAL-VQARGHRIESVPEMPLVISDSAESIEKTSQALKILKQIGAHADAEKA 186 Query: 148 --------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 LI+ G + + A RN+P +++ V+ +N+ D+ Sbjct: 187 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLA 245 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ ++SA LE+ + Sbjct: 246 PGGHLGRFVIWTQSAFNKLEEVY 268 >gi|62087534|dbj|BAD92214.1| ribosomal protein L4 variant [Homo sapiens] Length = 441 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 22 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 81 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 82 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 141 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 142 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 201 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 202 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 259 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 260 VGRFCIWTESAFRKLDELY 278 >gi|85101200|ref|XP_961104.1| 60S ribosomal protein L4-A [Neurospora crassa OR74A] gi|12718316|emb|CAC28667.1| probable ribosomal protein RPL4A [Neurospora crassa] gi|28922643|gb|EAA31868.1| 60S ribosomal protein L4-A [Neurospora crassa OR74A] Length = 361 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 58/264 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G V +F + I+ V + KR S S + +E Sbjct: 5 PTVTIIGADGKATGTTEVLPKVFGAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKEC-KTKYLVTRFRALDLS------- 149 AL+ + + +V+D+ KT + +A+ Sbjct: 125 SALAASAAAPLLMARGHQVSTVPEVPLVVDSAAFSGVNKTANALALLKAVGAGADVQKAK 184 Query: 150 ---------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDIL 187 L++ + D ++ RNIP + PV +N+ + Sbjct: 185 ASKKLRAGKGKLRDRRHRQRRGPLVVYSAETDGKDLIKGFRNIPGVETSPVDALNLLQLA 244 Query: 188 RCSKL----VLSKSAIEALEDRFK 207 L V + +AI+ L+ ++ Sbjct: 245 PGGHLGRFIVWTSAAIKELDAVYE 268 >gi|325969278|ref|YP_004245470.1| 50S ribosomal protein L4P [Vulcanisaeta moutnovskia 768-28] gi|323708481|gb|ADY01968.1| 50S ribosomal protein L4P [Vulcanisaeta moutnovskia 768-28] Length = 278 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 63/235 (26%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC--SKSKGRSEVAY 59 + V +++G I + F + ++ R + G K + V++ Sbjct: 22 VKVFDINGNAINEIELPSQFF-EPIRPDLILRAYISALTARLQPKGTDPMAGKRTTAVSF 80 Query: 60 TGSKMYVQKGTGRARH---------SSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLA 109 G G AR +++ G +A P +H + K+ R A Sbjct: 81 GI-------GLGIARVPRVKGSLWPTARLAPNVVKGRRAHPPKVEKVLHERINKRERRKA 133 Query: 110 LRHALS---------------DKFCSNDIMVIDNLVSKE--CKTKYLVTRFRALDL---- 148 +R A++ DK ++V D+ K + D Sbjct: 134 IRSAIAATAIKDLVIARGHTVDKVPQIPLIVNDDFERISVMADLKKSLESLGLWDDIERV 193 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +L+I D + ARN+P ++++PV+ + V Sbjct: 194 AERIRIRSGKGKMRGRRYKEGKSLLIVVSSTDASIIKVARNLPGVDVVPVRNLGV 248 >gi|269863418|ref|XP_002651215.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220064936|gb|EED42841.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 282 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 68/262 (25%) Query: 1 MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----R 54 M+ ++V DG+ G I+ +F ++ + ++ + + R + S Sbjct: 1 MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDIL 187 L+I N L+A NI + L V +N +L Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LL 232 Query: 188 R------CSKLVL-SKSAIEAL 202 R +L+L ++SA + L Sbjct: 233 RLCPGGHLGRLILWTESAFKKL 254 >gi|159040902|ref|YP_001540154.1| 50S ribosomal protein L4P [Caldivirga maquilingensis IC-167] gi|157919737|gb|ABW01164.1| ribosomal protein L4/L1e [Caldivirga maquilingensis IC-167] Length = 278 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 65/241 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GCSKSKGR--SEV 57 + + NL+GE G + + E F + ++ R + + G K G S V Sbjct: 17 AKAKLLNLNGEAVGEVDLPEH-FKTPIRLDLIRRAVLSALTARLQPKGTDKEAGLRTSAV 75 Query: 58 AYTGSKMYVQKGTGRARH---------SSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRS 107 ++ G G AR ++ G +A P + +K R Sbjct: 76 SFGT-------GLGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWERINRKERL 128 Query: 108 LALRHALSDKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDL---- 148 LA+R A++ ++V++ K + F+AL + Sbjct: 129 LAIRSAIAATAVRELIMARGHLVGDVKAIPLVVVNEFEGIS-KAADVKNVFKALGVWSDV 187 Query: 149 -----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 ++++ + D A RN+ ++++ V +++ Sbjct: 188 VKAQGNVRIRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYVDNLSILH 247 Query: 186 I 186 + Sbjct: 248 L 248 >gi|297672005|ref|XP_002814110.1| PREDICTED: 60S ribosomal protein L4-like [Pongo abelii] Length = 427 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVQGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNGIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|70985070|ref|XP_748041.1| 60S ribosomal protein L4 [Aspergillus fumigatus Af293] gi|66845669|gb|EAL86003.1| 60S ribosomal protein L4, putative [Aspergillus fumigatus Af293] gi|159126035|gb|EDP51151.1| 60S ribosomal protein L4, putative [Aspergillus fumigatus A1163] Length = 373 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 84/266 (31%), Gaps = 62/266 (23%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +++ DG+ G ++ +F + I+ +V + KR + S + + Sbjct: 5 PTVTIATADGKPSG-ATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + G+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFAT 123 Query: 111 RHAL------SDKFCSNDIM--------VIDNLVSKEC---KTKYLVTRFRALDLS---- 149 AL S F + V+++ + KTK + +AL Sbjct: 124 ASALAASSVPSLLFARGHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLV 183 Query: 150 ------------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184 L++ ++D + A RNIP + V +N+ Sbjct: 184 KVQKSKKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLL 243 Query: 185 DILRCSKL----VLSKSAIEALEDRF 206 + L V + +A EAL+ + Sbjct: 244 QLAPGGHLGRFIVWTSAAFEALDQVY 269 >gi|164690933|dbj|BAF98649.1| ribosomal protein L4 [Solea senegalensis] Length = 369 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 85/262 (32%), Gaps = 64/262 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + ++ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVVMPAVFKAPIRPDVVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ ++G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPCERGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGXRIEEIPEVPLVVEDKVEHYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 II D A RNIP I L V +N +LR Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCII--YNQDAGIIKAFRNIPGITLQNVNKLN---LLRLAP 242 Query: 189 ----CSKLVLSKSAIEALEDRF 206 L+ ++SA L++ + Sbjct: 243 GGHIGRFLIWTESAFRKLDELY 264 >gi|164655483|ref|XP_001728871.1| hypothetical protein MGL_4038 [Malassezia globosa CBS 7966] gi|159102757|gb|EDP41657.1| hypothetical protein MGL_4038 [Malassezia globosa CBS 7966] Length = 373 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 55/259 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++VR +DG G + + +F + ++ + + KR + + + +E Sbjct: 5 PTVNVRGIDGAASGSLPL-PAVFNAPIRPDVVQAIHSNLAKNKRQPYAVASNAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG F P + R A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMARGGHMFAPTRVWRRWFIKTNQTQRRYATA 123 Query: 112 HALSDKFC--------------SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 AL+ +++ N + KTK + +AL+ + +I Sbjct: 124 SALAATALPALVLARGHRVEEIEEVPLIVSNEIESFTKTKQAIAALKALNAYDDVIKVSN 183 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D A RN+P + + V +N+ + Sbjct: 184 SRKIRAGIGKLRNRRHTQRRGPLVIYNQDNGIVKAFRNLPGVEIASVHSLNLLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 L V+ ++ A + L+ F Sbjct: 244 LGRFVIWTEDAFKQLDKIF 262 >gi|312385773|gb|EFR30192.1| hypothetical protein AND_00368 [Anopheles darlingi] Length = 429 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 81/259 (31%), Gaps = 57/259 (22%) Query: 4 LSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +SV E IS+ +F + +++ V + KR + S + +E Sbjct: 10 ISVYTEKNEAAKDKGISL-PVLFKAPIRPDVVSEVSQLMRRNKRQPYAVSEAAGHQTSAE 68 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G R + GG+ F P + ++ AL Sbjct: 69 SWGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALV 128 Query: 112 HALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-------------- 153 AL+ + VID + + +F+ + + Sbjct: 129 SALAATGVPALVQSRGHVIDGISELPLVVSDDIQKFQKTKQAVKFLRRSKVWADVQKVYN 188 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D + A RNIP ++ + V +N+ + Sbjct: 189 SQRLRAGRGKMRNRRRIQRRGPLVIYAKDEGLRKAFRNIPGVDTMNVFKLNLLKLAPGGH 248 Query: 192 L----VLSKSAIEALEDRF 206 + V ++SA L++ + Sbjct: 249 VGRLCVWTESAFAKLDEIY 267 >gi|62083421|gb|AAX62435.1| ribosomal protein L4 [Lysiphlebus testaceipes] Length = 429 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V E +F + I+ + S KR + + +E Sbjct: 10 VTVFTEKNEASKETISLPAVFKAPIRPDIVNTIHVQISKNKRQPYCVSEKAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + AL A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKPWRRWHRKINVNQKRYALVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA---- 151 ++ ++ V+++ + + KTK V R + D+ Sbjct: 130 IAASGVPALVMSKGHMIQDVPEFPLVVEDKIQEYTKTKQAVIFLRRIKAWTDVKKVYNSK 189 Query: 152 --------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 LII G D+ + A RNIP ++L+ V +N+ + Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIIYGQ--DKGLKKAFRNIPGVDLMNVNKMNLLKLAPGGH 247 Query: 192 L---VL-SKSAIEALEDRF 206 + V+ +KSA + L+ + Sbjct: 248 VGRFVIWTKSAFDKLDALY 266 >gi|327311644|ref|YP_004338541.1| 50S ribosomal protein L4P [Thermoproteus uzoniensis 768-20] gi|326948123|gb|AEA13229.1| 50S ribosomal protein L4P [Thermoproteus uzoniensis 768-20] Length = 286 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 72/239 (30%), Gaps = 63/239 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS-EVAYTG 61 ++ V LDG G I + F + ++ R K KG S E + Sbjct: 31 KVPVYGLDGSAVGEIVLPPHFF-EPVRPDLIRRAFLSALSAKFQ----PKGVSPEAGRSH 85 Query: 62 SKMYVQK---GTGRAR------HSSKS---VSQFRGGGKAFGPVP-IIGVHALPKKVRSL 108 S Q G G AR H GG +A P + K+ R L Sbjct: 86 S---CQSFGVGLGIARIPRYKGHLWPRGCFSPNTVGGRRAHPPKVEKKLREEINKRERRL 142 Query: 109 ALRHALSD----KFCSNDIMVIDNLV------------SKE--------------CKTKY 138 A+R A++ + V++ L + + Sbjct: 143 AIRSAIAATAYLQLVKARGHVVEGLEQLPLVVANDIEQLDKTERLRRTLQALRVWPDVER 202 Query: 139 LVTRFRAL-----------DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 R R +L++ D AARN+P +++ V+ ++V + Sbjct: 203 AAERIRIRSGVGKMRGRRYKEPKSLLVVVSSPDAPLVRAARNLPGVDVAYVKSLSVLHL 261 >gi|115712810|ref|XP_001182016.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115938904|ref|XP_001186404.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 89 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 + NF A I N+L +G+NVY +L+ LVL+ A+ LE R Sbjct: 1 MPLNFLEAVNGIKTFNVLSAEGLNVYSMLKHKTLVLTLDAVNLLEQRL 48 >gi|208965460|dbj|BAG72744.1| ribosomal protein L4 [synthetic construct] Length = 427 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|170578226|ref|XP_001894323.1| 60S ribosomal protein L4 [Brugia malayi] gi|158599144|gb|EDP36835.1| 60S ribosomal protein L4, putative [Brugia malayi] Length = 385 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V N E +F + I++ V KR + S + +E Sbjct: 7 VTVYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSA 126 Query: 114 LSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI---------------- 153 ++ +ID + V F+ + + + Sbjct: 127 IAASGIPALVQARGHIIDQIPEVPFVVVDKVESFKKTKEAVSFLRRSHFWADIEKVYNSK 186 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 + D A RNIP ++LLPV +N+ + Sbjct: 187 RNRAGKGKGRNRRYKAKLGPLVVYNQDNGVVKAFRNIPGVHLLPVDKLNLLKVAPGGHLG 246 Query: 191 KLVL-SKSAIEALEDRF 206 +L++ ++SA L + Sbjct: 247 RLIIWTESAFRKLNRIY 263 >gi|8488|emb|CAA31759.1| unnamed protein product [Drosophila melanogaster] Length = 407 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 81/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +NV + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVV--YDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFARLNDLF 267 >gi|318087124|gb|ADV40154.1| putative ribosomal protein L4 [Latrodectus hesperus] Length = 317 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 ++V N + E G ++ + I+ V + +R + SK +E Sbjct: 10 ITVYNDNNEPSGKAITLPVVYRAPIRPDIVNYVHMNMAKNRRHPYAVSKEAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + R A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQRRYAICSA 129 Query: 114 ----------LSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD--------LSNA 151 +S +I +V+ + V + KTK V R + S+ Sbjct: 130 IAATGVPALVMSKGHRIEEIPEVPLVVSDKVQEYTKTKQAVQFLRKIKAWSDIQKVYSSK 189 Query: 152 LI------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188 + + D+ A RNIP I + V+ +N +LR Sbjct: 190 RFRAGKGKMRNRRRIQRLGPVIVYRKDQGLTRAFRNIPGIETINVEKLN---LLRLAPGG 246 Query: 189 --CSKLVLSKSAIEALEDRF 206 ++ ++SA L+ + Sbjct: 247 HVGRFVIWTESAFRRLDAIY 266 >gi|39645153|gb|AAH63811.1| Ribosomal protein L4 [Rattus norvegicus] gi|51980641|gb|AAH81801.1| Ribosomal protein L4 [Rattus norvegicus] gi|149041947|gb|EDL95788.1| rCG58071, isoform CRA_a [Rattus norvegicus] Length = 421 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|300521622|gb|ADK26022.1| r-protein L4p [Candidatus Nitrososphaera gargensis] Length = 270 Score = 60.8 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 63/259 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQS--WRKRIG---CSKSKGRSE 56 ++ V + G++ G I + +F + ++ +V +R G + +E Sbjct: 1 MKAKVVAVSGKETGEIEL-PVVFDTPYRPEVIHKVYVNLLSHSYQRQGRYPAAGEMVSAE 59 Query: 57 VAYTG---SKMYVQKGTGRARHS-SKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLA 109 TG +++ +G G R + V+ R G A P + K + L Sbjct: 60 SRNTGLGIARLARARGEGFPRAGQAAGVAGVRHGRVAHP--PESWKIIYKKINHKEKQLG 117 Query: 110 LRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLS------ 149 L A++ + +++ N + KTK L L L Sbjct: 118 LCSAIAATTRKELVQQRGHKIGDNVKLPIIVSNDIESIAKTKDLKKALLDLGLGDDIARA 177 Query: 150 ----------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +ALI+ G + L+ R+I +++ + ++V D+ Sbjct: 178 SMTRKAQSGTARRRGRPARSGTSALIVVGNN-SKLVALS-RSISGVDIKHAKDVSVIDLA 235 Query: 188 RCSKL----VLSKSAIEAL 202 SK + S+SAI+ L Sbjct: 236 PGSKPIRLTIFSQSAIDEL 254 >gi|30794450|ref|NP_077174.1| 60S ribosomal protein L4 [Mus musculus] gi|22001911|sp|Q9D8E6|RL4_MOUSE RecName: Full=60S ribosomal protein L4 gi|12842070|dbj|BAB25458.1| unnamed protein product [Mus musculus] gi|13097450|gb|AAH03459.1| Ribosomal protein L4 [Mus musculus] gi|26353248|dbj|BAC40254.1| unnamed protein product [Mus musculus] gi|62825991|gb|AAH94036.1| Ribosomal protein L4 [Mus musculus] gi|74139207|dbj|BAE38489.1| unnamed protein product [Mus musculus] gi|74177798|dbj|BAE38990.1| unnamed protein product [Mus musculus] gi|74185075|dbj|BAE39140.1| unnamed protein product [Mus musculus] gi|74188888|dbj|BAE39218.1| unnamed protein product [Mus musculus] gi|74194326|dbj|BAE24683.1| unnamed protein product [Mus musculus] gi|124376026|gb|AAI32324.1| Ribosomal protein L4 [Mus musculus] gi|124376376|gb|AAI32322.1| Ribosomal protein L4 [Mus musculus] gi|148694109|gb|EDL26056.1| ribosomal protein L4 [Mus musculus] Length = 419 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|193704510|ref|XP_001945463.1| PREDICTED: 60S ribosomal protein L4-like isoform 1 [Acyrthosiphon pisum] gi|328707724|ref|XP_003243482.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Acyrthosiphon pisum] Length = 459 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + E+ G +F + +++ V S R + SK +E Sbjct: 10 VSVYSEKNEETGETVALATVFKAPIRPDVVSFVHDNVSKNSRQPYAVSKLAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTRVWRRWHRKINVTQKRYATVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 ++ ++ V+ + + + KTK + R +A +I Sbjct: 130 IAASGVPALVMSKGHLVQEVPEFPLVVSDKIQEYTKTKQATIFLHRIKAWKDIQKVIKSR 189 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + D+ + A RNIP ++L+ ++ +N+ + + Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIVYSKDQGLRKAFRNIPGVDLINIRKLNLLHLAPGGHVG 249 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA + L+D + Sbjct: 250 RFIIWTQSAFQKLDDLY 266 >gi|88603498|ref|YP_503676.1| 50S ribosomal protein L4P [Methanospirillum hungatei JF-1] gi|109893603|sp|Q2FU92|RL4_METHJ RecName: Full=50S ribosomal protein L4P gi|88188960|gb|ABD41957.1| LSU ribosomal protein L4P [Methanospirillum hungatei JF-1] Length = 249 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 66/256 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG---------CSKSK 52 ++ V L G I + +F+ + + ++ + + Q R+ + + Sbjct: 1 MKAQVLTLTGSVAHEIELPP-VFSSEFRPDLIKKAVIAQQSRRYQPHGAYVYAGITASAV 59 Query: 53 GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALR 111 G K + RA V Q +GG +A P + + +K + AL Sbjct: 60 GWGSGRGVSHVP-RLKNSSRA----AKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALN 114 Query: 112 HALSD-----------KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDL----------- 148 A++ + + V+ KTK ++ RA+ + Sbjct: 115 SAIAATISPELVRSRGHVFTGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSR 174 Query: 149 -----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---- 187 + LI+ G + AARN+ +++ V +NV ++L Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTGKER----LRAARNLAGVDVCLVDNLNV-ELLAPGT 229 Query: 188 RCSKLVL-SKSAIEAL 202 ++L L ++ A+ L Sbjct: 230 HSARLTLWTEDAVRKL 245 >gi|239612338|gb|EEQ89325.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis ER-3] Length = 372 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 5 PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK + L Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 185 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDIDGKELVKAFRNIPGVETCPVFALN 241 >gi|16579885|ref|NP_000959.2| 60S ribosomal protein L4 [Homo sapiens] gi|114657764|ref|XP_001174726.1| PREDICTED: similar to ribosomal protein isoform 2 [Pan troglodytes] gi|22002063|sp|P36578|RL4_HUMAN RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal protein L1 gi|432359|dbj|BAA04887.1| ribosomal protein [Homo sapiens] gi|12655035|gb|AAH01365.1| Ribosomal protein L4 [Homo sapiens] gi|13543304|gb|AAH05817.1| Ribosomal protein L4 [Homo sapiens] gi|14043526|gb|AAH07748.1| Ribosomal protein L4 [Homo sapiens] gi|14124944|gb|AAH07996.1| Ribosomal protein L4 [Homo sapiens] gi|14602748|gb|AAH09888.1| Ribosomal protein L4 [Homo sapiens] gi|14603400|gb|AAH10151.1| Ribosomal protein L4 [Homo sapiens] gi|15779181|gb|AAH14653.1| Ribosomal protein L4 [Homo sapiens] gi|17932934|dbj|BAB79458.1| ribosomal protein L4 [Homo sapiens] gi|44890465|gb|AAH66925.1| Ribosomal protein L4 [Homo sapiens] gi|60656419|gb|AAX32773.1| ribosomal protein L4 [synthetic construct] gi|66267594|gb|AAH95427.1| Ribosomal protein L4 [Homo sapiens] gi|119598182|gb|EAW77776.1| ribosomal protein L4, isoform CRA_c [Homo sapiens] gi|123982748|gb|ABM83115.1| ribosomal protein L4 [synthetic construct] gi|123997415|gb|ABM86309.1| ribosomal protein L4 [synthetic construct] gi|158255670|dbj|BAF83806.1| unnamed protein product [Homo sapiens] gi|158257150|dbj|BAF84548.1| unnamed protein product [Homo sapiens] Length = 427 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|90075136|dbj|BAE87248.1| unnamed protein product [Macaca fascicularis] Length = 427 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|225706604|gb|ACO09148.1| 60S ribosomal protein L4-A [Osmerus mordax] Length = 376 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+D+ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I L V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCII--YNQDAGVTKAFRNIPGITLQNVNKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|261202602|ref|XP_002628515.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] gi|239590612|gb|EEQ73193.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081] Length = 372 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V N +G+ G +FA + I+ V + KR + S + +E Sbjct: 5 PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + I +V+D+ + KTK + L Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D + A RNIP + PV +N Sbjct: 185 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDVDGKELVKAFRNIPGVETCPVFALN 241 >gi|109081580|ref|XP_001110778.1| PREDICTED: 60S ribosomal protein L4-like isoform 4 [Macaca mulatta] Length = 427 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|75076107|sp|Q4R5P9|RL4_MACFA RecName: Full=60S ribosomal protein L4 gi|67970467|dbj|BAE01576.1| unnamed protein product [Macaca fascicularis] Length = 427 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|11968086|ref|NP_071955.1| 60S ribosomal protein L4 [Rattus norvegicus] gi|1710511|sp|P50878|RL4_RAT RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal protein L1 gi|1165139|emb|CAA57671.1| ribosomal protein L4 [Rattus norvegicus] Length = 421 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S C ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|12846949|dbj|BAB27375.1| unnamed protein product [Mus musculus] Length = 419 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGFKKTKEAVQLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|158291187|ref|XP_312665.4| AGAP002306-PA [Anopheles gambiae str. PEST] gi|157018256|gb|EAA07484.5| AGAP002306-PA [Anopheles gambiae str. PEST] Length = 435 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 77/254 (30%), Gaps = 55/254 (21%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + E V+ IF + ++ V + +R + S + +E Sbjct: 10 VSVYSDKNEAVKDKGVALPAIFKAPIRPDVVNEVSQLMRRNRRQAYAVSEAAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + ++ AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKPWRRWHRKININLKRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 AL+ + +ID + + +F+ + + Sbjct: 130 ALAASGVPALVQSRGHIIDGISELPLVVSDDIQKFQKTKQAVTFLRRSKVWADVQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP ++ + V +N+ + + Sbjct: 190 QRLRAGRGKMRNRRRVQRRGPLIIYDRDEGLRRAFRNIPGVDTMRVSKMNLLKLAPGGHV 249 Query: 193 ----VLSKSAIEAL 202 V ++SA L Sbjct: 250 GRLCVWTESAFAKL 263 >gi|11496536|ref|NP_044546.1| ribosomal protein L4 [Toxoplasma gondii RH] gi|5231239|gb|AAD41133.1|U87145_2 ribosomal protein L4 [Toxoplasma gondii] Length = 211 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 3/149 (2%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108 S +K ++ +Y+ K+ QKG+G+AR SK +GG AFG + L KK L Sbjct: 61 SNTKNKAFSSYSNKKLRQQKGSGKARIGSKKSVLQKGGSVAFGLNLKRYFNPLIKKTLFL 120 Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR---FRALDLSNALIIDGCQLDRNFQL 165 L++ +K + I+ I+ K + + + L ++ + + + Sbjct: 121 ILKYLCLNKRTNIYIININTFNKYSVNFKDYLKLQVQLNGILIHKLLCLNLTKNNLVYFK 180 Query: 166 AARNIPNINLLPVQGINVYDILRCSKLVL 194 + IN L + +L + + Sbjct: 181 FTKQGKQINFLKSNKLTCLKLLSFKYIFI 209 >gi|209881791|ref|XP_002142333.1| 60S ribosomal protein L4 [Cryptosporidium muris RN66] gi|209557939|gb|EEA07984.1| 60S ribosomal protein L4, putative [Cryptosporidium muris RN66] Length = 389 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 61/259 (23%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 +S+ ++ + S+ +F + ++ V S KR + + +E Sbjct: 8 VSIYSIKDSSRATSSMPLPTVFISPLRPDLVRYVFTNMSKNKRQAYGVSTNAGHQHSAES 67 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G +R + GG F P + A+ Sbjct: 68 WGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFNPNKTYRRFHRKTNTNEKRHAVAS 127 Query: 113 ALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158 AL+ + I +V+ + V KT V F + Sbjct: 128 ALAATGCPALVMARGHRINELPELPLVVSDDVESVTKTSSAVEFFNRFGFEEEMKRVDSS 187 Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR---- 188 +D+ A RNIP + V+ +N +L+ Sbjct: 188 IAIRCGKGKMRNRRRVCARGPLVIYAVDKGITRAMRNIPGVETCNVESLN---LLKLAPG 244 Query: 189 --CSKL-VLSKSAIEALED 204 +L + + SA++ L++ Sbjct: 245 GTFGRLTIFTVSAMKKLQE 263 >gi|67902378|ref|XP_681445.1| hypothetical protein AN8176.2 [Aspergillus nidulans FGSC A4] gi|40740008|gb|EAA59198.1| hypothetical protein AN8176.2 [Aspergillus nidulans FGSC A4] gi|259480947|tpe|CBF74039.1| TPA: 60S ribosomal protein L4, putative (AFU_orthologue; AFUA_5G03020) [Aspergillus nidulans FGSC A4] Length = 372 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ + +G+ G +F + I+ +V + KR + S + +E Sbjct: 5 PTVSIASGEGKPTGATCPLPAVFNSPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQRRFATA 124 Query: 112 HAL------SDKFCSNDIM--------VIDNLVSKEC---KTKYLVTRFRALDLS----- 149 AL S F + V+D+ + KTK V +AL Sbjct: 125 SALAASSVPSLLFARGHRIANVPEVPLVVDSKTFENAAVTKTKAAVALLQALGAGPELVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RNIP I PV +N+ Sbjct: 185 VSKSRKLRAGKGKLRDRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGIETSPVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA EAL+ + Sbjct: 245 LAPGGHLGRFIVWTSSAFEALDTVY 269 >gi|296413694|ref|XP_002836544.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630371|emb|CAZ80735.1| unnamed protein product [Tuber melanosporum] Length = 413 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 61/265 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG G + +F + I+ +V + KR + S + +E Sbjct: 43 PTVTIHGADGTPCGNTATLPSVFKAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGHQTSAE 102 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G G R + G+ F P + + Sbjct: 103 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHVKINLGQKRFATA 162 Query: 109 -------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL------- 148 A H +S +++ D+ + KT+ V +++ Sbjct: 163 SALAASAAAPLVQARGHRIST-VPELPLVIADSAFADMSKTRAAVELLKSVGAYQDVTKA 221 Query: 149 ---------SNAL-----------IIDGCQLDRN---FQLAARNIPNINLLPVQGINVYD 185 L ++ D N + RNIP + V +N+ Sbjct: 222 SKSRKIRAGKGKLRGRRHRQRRGPLVIINPTDENAQSVVKSFRNIPGVETASVTSLNLLQ 281 Query: 186 ILRCSK----LVLSKSAIEALEDRF 206 + +V ++SA AL + Sbjct: 282 LAPGGHLGRFVVWTESAFNALNTVY 306 >gi|260942443|ref|XP_002615520.1| hypothetical protein CLUG_04402 [Clavispora lusitaniae ATCC 42720] gi|238850810|gb|EEQ40274.1| hypothetical protein CLUG_04402 [Clavispora lusitaniae ATCC 42720] Length = 356 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 56/261 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++SV + GE +FA + ++ V + KR + S + +E Sbjct: 4 PQVSVVSAQGEKTSSQLPLPAVFAAPIRADVVHSVFVRVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G+G R + GG+ F P + + + A Sbjct: 64 SWGTGRAVARIPRVGGSGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHVKVNQNEKRYATA 123 Query: 112 HALS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 A++ ++ ++V ++ S + KTK V +A+ ++ Sbjct: 124 SAIAASAVTSLVLARGHRVEQVAELPLVVSNDFESVK-KTKEAVAVLKAVGAHKDIVRVL 182 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 + D A RNIP ++ V + + + Sbjct: 183 KSKKMRAGKGKLRNRRFVQKKGPLVVYANDNGISKALRNIPGVDAAHVSRLGLLQLAPGA 242 Query: 188 RCSKLVL-SKSAIEALEDRFK 207 + V+ +++A E+L+ ++ Sbjct: 243 HLGRFVIWTQAAFESLDSVYE 263 >gi|305662571|ref|YP_003858859.1| LSU ribosomal protein L4P [Ignisphaera aggregans DSM 17230] gi|304377140|gb|ADM26979.1| LSU ribosomal protein L4P [Ignisphaera aggregans DSM 17230] Length = 273 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 83/258 (32%), Gaps = 63/258 (24%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64 + ++DG GVI + +F+L + ++ R + + K R +A Sbjct: 18 PLFDIDGNLVGVIDLPL-VFSLPIRVDVIRRAVHSALTARIQ----VKARDPLAGKRRVG 72 Query: 65 YVQKGTGRA-----RHSSKSV---SQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115 G G + R + GG + F P + +H + KK A+ ALS Sbjct: 73 ESW-GIGYSVARVPRLDNGRAVFAPNVVGGRRQFAPTILKKIHEEINKKEMRFAIMSALS 131 Query: 116 DKFCSN----------------DIMVIDNLVSKECKTKYLVTRFRALDL----------- 148 I+++++ + TK L + L Sbjct: 132 ALASKEFVLRRGYELPPNIELLPIVIVNSFE-EISSTKELRDLLEKIGLWKNIERAQQRT 190 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC--- 189 +L+ A RN+P ++ +N+ + Sbjct: 191 RIRAGKGKRRGRRYVTPKSLLFIVSNTRAPIIKAIRNLPGVDYSTPDNLNILTLAPGGMP 250 Query: 190 SKL-VLSKSAIEALEDRF 206 +L ++S+ A+E ++ ++ Sbjct: 251 GRLAIISQKALELIDQKY 268 >gi|156353812|ref|XP_001623105.1| predicted protein [Nematostella vectensis] gi|156209766|gb|EDO31005.1| predicted protein [Nematostella vectensis] Length = 358 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 65/262 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 ++V N +GE G ++ +F + ++ V + KR + +K +E Sbjct: 7 ITVFNENGESAGQTTL-PAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + R A+ Sbjct: 66 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 125 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 ++ I +VI + + KT V +A++ Sbjct: 126 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSK 185 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 LII D+ + A RN+P + L V +N +L+ Sbjct: 186 KIRAGKGKMRNRRTVMRKGPLII--YNNDQGLRQAFRNLPGVELQHVDRLN---LLKLCP 240 Query: 189 ----CSKLVLSKSAIEALEDRF 206 ++ S+ A E L+ + Sbjct: 241 GGHLGRFIIWSQGAFEKLDAIY 262 >gi|326493892|dbj|BAJ85408.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 459 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + E+ G +F + +++ V S R + SK +E Sbjct: 10 VSVYSEKNEETGETVALATVFKAPIRPDVVSFVHDNVSKNSRQPYAVSKLAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTRVWRRWHRKINVTQKRYATVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 ++ ++ V+ + + + KTK + R +A +I Sbjct: 130 IAASGVPALVMSKGHLVQEVPEFPLVVSDKIQEYTKTKQATIFLHRIKAWKDIQKVIKSR 189 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + D+ + A RNIP ++L+ ++ +N+ + + Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIVYSKDQGLRKAFRNIPGVDLINIRKLNLLHLAPGGHVG 249 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA + L+ + Sbjct: 250 RFIIWTQSAFQKLDSLY 266 >gi|62460480|ref|NP_001014894.1| 60S ribosomal protein L4 [Bos taurus] gi|73917531|sp|Q58DW0|RL4_BOVIN RecName: Full=60S ribosomal protein L4 gi|61553010|gb|AAX46334.1| ribosomal protein L4 [Bos taurus] gi|74267758|gb|AAI02522.1| Ribosomal protein L4 [Bos taurus] gi|296483623|gb|DAA25738.1| 60S ribosomal protein L4 [Bos taurus] Length = 422 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|296213527|ref|XP_002753304.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus] Length = 428 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|242398280|ref|YP_002993704.1| 50S ribosomal protein L4P [Thermococcus sibiricus MM 739] gi|259491578|sp|C6A160|RL4_THESM RecName: Full=50S ribosomal protein L4P gi|242264673|gb|ACS89355.1| 50S ribosomal protein L4P [Thermococcus sibiricus MM 739] Length = 255 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 93/262 (35%), Gaps = 65/262 (24%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 +++ V +L+GE I++ +F + ++ R + + +GR +A Sbjct: 1 MKVKVFSLNGEPIEEITL-PKVFQTPFRPDLIKRAVIASWTHRIQ----PQGRDPLAGKR 55 Query: 62 SKMYV-QKGTGRARHSSKS-VSQF-------RGGGKAFGPVP-IIGVHALPKKVRSLALR 111 KG G AR +F RGG +A P + + KK + LAL Sbjct: 56 RVTENIGKGRGMARVERIKTSPRFAAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALM 115 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + + +V++N + K +T F+ L + Sbjct: 116 SAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKR 175 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 LI+ + ARN P ++++ V + V ++L Sbjct: 176 NTKVRAGKGKMRGRRYKKAKGPLIVVA--KNEGIIQGARNHPGVDVVVVDNLGV-ELLAP 232 Query: 188 --RCSKLVL-SKSAIEALEDRF 206 +L + +K AIE L + + Sbjct: 233 GAHPGRLTIWTKGAIERLREFY 254 >gi|156841505|ref|XP_001644125.1| hypothetical protein Kpol_1053p3 [Vanderwaltozyma polyspora DSM 70294] gi|156114761|gb|EDO16267.1| hypothetical protein Kpol_1053p3 [Vanderwaltozyma polyspora DSM 70294] Length = 362 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 81/260 (31%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V++L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVTVQSLTGEATSTALPLPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + A Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL--------- 148 L+ I +V+ + KTK V +A+ Sbjct: 124 SAIAASAVASLVLARGHKVEKIPEIPLVVSKDLESIKKTKEAVAALKAVGAQADLVKVLK 183 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 S L ++ + D A RN+P + V +++ + Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKAFRNVPGVETANVASLSLLQLAPGA 242 Query: 188 RCSKLVL-SKSAIEALEDRF 206 + V+ ++SA L+ + Sbjct: 243 HLGRFVIWTESAFAKLDQVW 262 >gi|170516813|gb|ACB15215.1| ribosomal protein L4 [uncultured marine group II euryarchaeote DeepAnt-15E7] Length = 292 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 86/271 (31%), Gaps = 78/271 (28%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAY-TG 61 +++ D I++ F+ ++ ++ + +R K R+ Sbjct: 26 YSVEANDGKSITLPSA-FSSDVREDLIRSTVLASRANRRQPYGHREHDGK-RAPQPGMKH 83 Query: 62 SKMYVQKGTGRAR-------HSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHA 113 S + KG G +R + RGG +A GP V + K R +A A Sbjct: 84 SVEWWGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPLVAKDWSQKVNSKQRRMARDSA 143 Query: 114 LSDKFCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR 144 ++ + + ++ID V + T+ V Sbjct: 144 IAATVDAESVAARGHRFDVGVRFPVIIDGYVESRNDSEEKYEIESIPLQYSTRKFVAMME 203 Query: 145 ALDL----------------------------SNALIIDGCQLDRNFQLAARNIPNINLL 176 L L + L++ + AARN+P ++ + Sbjct: 204 GLGLGADLERAKNGRNIRAGKGKMRGRRYRTPKSILLVVSNR--DGLHKAARNVPGVDAV 261 Query: 177 PVQGINVYDIL---RCSKL-VLSKSAIEALE 203 + ++ D+ +L V +K+AIE LE Sbjct: 262 VTKDLSAEDLAPGGDSGRLTVWTKAAIEELE 292 >gi|57108289|ref|XP_535522.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis familiaris] gi|74000590|ref|XP_852791.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis familiaris] gi|74004019|ref|XP_849762.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis familiaris] Length = 422 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|312065488|ref|XP_003135815.1| 60S ribosomal protein L4 [Loa loa] gi|307769036|gb|EFO28270.1| 60S ribosomal protein L4 [Loa loa] Length = 394 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 60/256 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +++ N E +F + I++ V KR + S + +E Sbjct: 7 VTIYNDKSEATDSQIKLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSIEAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSA 126 Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRA----LDLSNA--- 151 ++ D+ +V+D + S + KTK V+ R D+ Sbjct: 127 IAASGVPALVQARGHIIDQIPEVPFVVVDKVESFK-KTKEAVSFLRRSHFWADIEKVYNS 185 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 LI+ D A RNIP ++LLPV +N+ + Sbjct: 186 KRNRAGKGKGRNRRHKAKLGPLIV--YSQDNGIVKAFRNIPGVHLLPVDHLNLLKVAPGG 243 Query: 188 RCSKLVL-SKSAIEAL 202 +L++ ++SA L Sbjct: 244 HLGRLIIWTESAFRKL 259 >gi|13541156|ref|NP_110844.1| 50S ribosomal protein L4P [Thermoplasma volcanium GSS1] gi|46396652|sp|Q97BX6|RL4_THEVO RecName: Full=50S ribosomal protein L4P gi|14324544|dbj|BAB59471.1| ribosomal protein large subunit L4 [Thermoplasma volcanium GSS1] Length = 255 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 65/258 (25%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--GRSEVAYT 60 ++ + +++GE +G I + E IF ++ ++ + R S R S G V +T Sbjct: 4 KVPIYSINGEKRGEIDLPE-IFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHT 62 Query: 61 GSKMYVQKGTGRARH-----SSKSVSQFRGGGKAFGPVPII---GVHALPKKVRSLALRH 112 G G +R S+ V G P + +K R +A Sbjct: 63 TK-----PGLGISRMPRIAGGSRVVGIASAVGGKSAHSPRSTKKLYVGINEKERKMAKFS 117 Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL---------- 148 A++ ++ + +V+++ VS KTK V +++ L Sbjct: 118 AIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEG 177 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 + LI+ + + +P +++ + +++ + Sbjct: 178 KHIRAGRGKMRNRRYKVPKSLLIVGTDSVSLKVFKS---LPGVDVASMDSLSIRKLAPGG 234 Query: 188 RCSKL-VLSKSAIEALED 204 +L V ++SAIE L + Sbjct: 235 VGGRLTVYTESAIEKLRE 252 >gi|290985315|ref|XP_002675371.1| predicted protein [Naegleria gruberi] gi|284088967|gb|EFC42627.1| predicted protein [Naegleria gruberi] Length = 365 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 63/266 (23%) Query: 2 IELSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GCSK--SKGRSE 56 +SV N GE +++ + +F + I++ + R G K S Sbjct: 6 PTVSVFNAKTGEVTKEVALPD-VFQAPIRPDIVSNIANILRMNLRQPYGVHKYAGHQHSA 64 Query: 57 VAYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 +++ S++ G G R + G+ F P + +H + K R A Sbjct: 65 ISWGTGRAVSRIPRVSGGGTHRAGQGAFGNMCRKGRMFSPTRTWRVWMHVVKKNERRYAT 124 Query: 111 RH------------ALSDKFCSND---IMVIDNLVSKECKTKYLVTRFRALDL------- 148 A K ++V D+L + KTK +V + L Sbjct: 125 ASAIAASSITPLVQARGHKVEQVKQLPLVVSDDLQFVQ-KTKEVVAFLKKHGLLSDAKKA 183 Query: 149 -SNALIIDGCQLDRN-----------------------FQLAARNIPNINLLPVQGINVY 184 + + G RN LA RN+P +++L V +N+ Sbjct: 184 KDSKTLRKGRGKMRNRRYTLKKGPLVVYNAKPGTQTPPIVLAVRNLPGVDVLNVHQLNLL 243 Query: 185 DIL---RCSKLVL-SKSAIEALEDRF 206 + +L++ ++SA AL ++F Sbjct: 244 KLAPGGHPGRLIVWTESAFTALNEKF 269 >gi|307595042|ref|YP_003901359.1| 50S ribosomal protein L4P [Vulcanisaeta distributa DSM 14429] gi|307550243|gb|ADN50308.1| 50S ribosomal protein L4P [Vulcanisaeta distributa DSM 14429] Length = 278 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 63/236 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC--SKSKGRSEVA 58 + V +L G +S+ F + ++ R K G K + V+ Sbjct: 21 TVKVLDLGGNAVSEVSLPPQ-FLEPIRPDLILRAYISALTAKLQPKGTDPMAGKRTTAVS 79 Query: 59 YTGSKMYVQKGTGRARH---------SSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSL 108 + G G AR +++ G +A P +H + K+ R Sbjct: 80 FGI-------GLGLARVPRVKGSLWPTARFAPNVVKGRRAHPPKVEKVLHERINKRERRK 132 Query: 109 ALRHALS---------------DKFCSNDIMVIDNLV--SKECKTKYLVTRFRALDL--- 148 A+R A++ +K ++V D+ K + D Sbjct: 133 AIRSAIAATAIKDLITARGHIVEKVPQIPLIVSDDFERIGVMADLKKALMSLGLWDDIER 192 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +L+I +D ARN+P ++ +PV+ ++V Sbjct: 193 VAERIRVRSGKGKMRGRRYKEGKSLLIVVSTVDAPVIKVARNLPGVDAVPVRNLSV 248 >gi|197097764|ref|NP_001125225.1| 60S ribosomal protein L4 [Pongo abelii] gi|75055142|sp|Q5RCR3|RL4_PONAB RecName: Full=60S ribosomal protein L4 gi|55727377|emb|CAH90444.1| hypothetical protein [Pongo abelii] Length = 427 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNAL------- 152 +S ++ +V+++ V KTK V + L N + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|321479331|gb|EFX90287.1| hypothetical protein DAPPUDRAFT_205304 [Daphnia pulex] Length = 370 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 ++V N E G I + IF + I++ V + S +R + + +E Sbjct: 10 ITVYNEKAEASGTSIQL-PAIFRAPIRPDIVSFVQQQMSMNRRHPYCVSEKAGHQTSAES 68 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + + AL Sbjct: 69 WGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRFALCS 128 Query: 113 AL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 A+ S ++ V+ + V + KTK V R L D+ Sbjct: 129 AVAASGIPSLVMSKGHLINDVPEMPLVVSDKVQEYKKTKQAVVLLRRLRAWTDVQKVYKT 188 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L+I G D+ A RNIP ++++ V +N+ + Sbjct: 189 RRFRAGKGKMRNRRRTSKLGPLVIYGR--DQGLTKAFRNIPGVSMISVNKLNLMKLAPGG 246 Query: 191 KL----VLSKSAIEALEDRF 206 + + ++SA + L + Sbjct: 247 HVGRFCIWTESAFQRLNALY 266 >gi|149692303|ref|XP_001497144.1| PREDICTED: similar to ribosomal protein L4 [Equus caballus] Length = 422 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|171185279|ref|YP_001794198.1| 50S ribosomal protein L4P [Thermoproteus neutrophilus V24Sta] gi|170934491|gb|ACB39752.1| ribosomal protein L4/L1e [Thermoproteus neutrophilus V24Sta] Length = 284 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 72/234 (30%), Gaps = 61/234 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG I F + ++ R + KG E G Sbjct: 29 KLKVYGPDGAYIADID-PPLHFMEPVRPDLIRRAYLSALSARFQ----PKGVYE--GAGR 81 Query: 63 KMYVQK---GTGRARH----SSK-----SVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLA 109 + + G G AR S RGG +A P +H + +K ++LA Sbjct: 82 EHSCESFGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPKVEKKLHEEINRKEKNLA 141 Query: 110 LRHALSDKF----CSNDIMVIDNL----------VSKECKTKYLVTRFRALDL------- 148 +R A++ + V+D + K + K AL L Sbjct: 142 IRSAIAATAYRSWVAARGHVVDKIPALPLVVVGDAEKVGRAKEARKLLEALGLWPDVERA 201 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 ++++ D A RN P ++++PV G+N Sbjct: 202 AAGVKIRSGKGKRRGRRYKEPKSVLVVVSSADVPLAAAVRNFPGVDVVPVDGLN 255 >gi|50303803|ref|XP_451848.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640980|emb|CAH02241.1| KLLA0B07139p [Kluyveromyces lactis] Length = 363 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 54/233 (23%) Query: 1 MIELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGR 54 + +++V +L+GE + +F + I+ V + KR + S + Sbjct: 3 IPQVAVLSLNGETTST-DLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTS 61 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + + + A Sbjct: 62 AESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYA 121 Query: 110 LRH----------ALSDKFCSND-----IMVIDNLVSKECKTKYLVTRFRALDLSNALI- 153 L+ ++V D+L S + KTK V +A+ + +I Sbjct: 122 TASAIAASAVPSLVLARGHRVEKVPSIPLVVSDDLQSIQ-KTKEAVAALKAVGAHSDVIK 180 Query: 154 -------------------------IDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D A RN+P + V + Sbjct: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASL 233 >gi|149239628|ref|XP_001525690.1| 60S ribosomal protein L4-B [Lodderomyces elongisporus NRRL YB-4239] gi|146451183|gb|EDK45439.1| 60S ribosomal protein L4-B [Lodderomyces elongisporus NRRL YB-4239] Length = 363 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 82/259 (31%), Gaps = 54/259 (20%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++SV + GE +F+ + I+ V + KR + + + +E Sbjct: 5 PQVSVVTVSGEQASSQLPLPAVFSAPVRPDIVHSVFVRINKNKRQAYAVAENAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + A Sbjct: 65 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYATA 124 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153 L+ ++ +V+ N KTK V +A+ ++ Sbjct: 125 SAIAASAVTSLVLARGHRVENVKEIPLVVSNEFESVTKTKDAVAVLKAVGAHKDVVKVIK 184 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188 + D+ A RNIP + V+ + + + Sbjct: 185 SKKMRAGKGKLRGRRFTQRRGPLVVYGEDKGLVKALRNIPGVETSSVKHLGLLQLAPGAH 244 Query: 189 CSKLVL-SKSAIEALEDRF 206 + ++ ++SAIEAL+ + Sbjct: 245 LGRFIIWTESAIEALDSIY 263 >gi|27694877|gb|AAH41744.1| Rpl4-b-prov protein [Xenopus laevis] Length = 375 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 12 ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|311334504|emb|CBN08633.1| ribosomal protein L4 [Microcosmus squamiger] Length = 359 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 60/256 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV + G G +F + I+ V S R + + +E Sbjct: 8 VSVYSEKGVASGTTITLPAVFKAPIRPDIVNFVHTNVSKNHRQPYAVKSIAGEQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ + P R A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRMYAPTKTWRRWHRKCNTNQRRYAMCSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALII-- 154 +S I +V+++ V + KTK L+ + +A + + Sbjct: 128 LAASALPALIMSKGHKIEQIPEVPLVVEDKVQQYKKTKEAVLLLKKLKAWEDIKKVKDSK 187 Query: 155 ---------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188 D A RNIP I L+ V + D+L+ Sbjct: 188 RIRAGKGKMRNRRRTMRRGPCVIYDKDEGISKAFRNIPGITLISVDRL---DLLKIAPGG 244 Query: 189 --CSKLVLSKSAIEAL 202 L+ ++SA ++L Sbjct: 245 HVGRFLIWTESAFKSL 260 >gi|145354643|ref|XP_001421589.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581827|gb|ABO99882.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 387 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 78/254 (30%), Gaps = 57/254 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 L V ++ G + G S ++F + I+ V + R + + +E Sbjct: 5 LPVVSVQGGN-GATSALPEVFLSPIRPDIVNAVHTGLNKNNRQAYAVYNRAGHQTAAESW 63 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG+ F P + K + A+ A Sbjct: 64 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRRVNLKEKRYAVCSA 123 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL----------- 148 L+ + + +V+D+ S KT V + L Sbjct: 124 LAASAVPALLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQLGAYADVEKVKASR 183 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 ++ + D A RNIP + L V + + + + Sbjct: 184 NIRSGKGKMRNRRYVQRRGPLVVYSE-DNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHV 242 Query: 193 ----VLSKSAIEAL 202 + +KSA + L Sbjct: 243 GRFIIWTKSAFDKL 256 >gi|157124831|ref|XP_001660544.1| 60S ribosomal protein L4 [Aedes aegypti] gi|94469276|gb|ABF18487.1| ribosomal protein L4 [Aedes aegypti] gi|108873832|gb|EAT38057.1| 60S ribosomal protein L4 [Aedes aegypti] Length = 431 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +S+ + E +++ +F + +++ V + KR + S + +E Sbjct: 10 VSIYSDKNEALKDKNLALPYVFKAPIRPDVVSEVSQLMRRNKRQAYAVSEAAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + ++ AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + VID + V +F+ + A + Sbjct: 130 AIAASGVPALVQSRGHVIDGISELPLVVSDEVQKFQKTKQAVAFLRRSKVWADVQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP ++ + V +N+ + + Sbjct: 190 QRMRAGRGKMRNRRRVQRRGPLVIYAKDEGLRKAFRNIPGVDTMSVNRMNLLKMAPGGHV 249 Query: 193 ----VLSKSAIEALEDRF 206 V ++SA L D + Sbjct: 250 GRLCVWTESAFAQLNDIY 267 >gi|307775447|ref|NP_001182746.1| ribosomal protein L4-like [Oryctolagus cuniculus] Length = 425 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 D A RNIP I LL V +N+ + + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLAPGGHVG 247 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 248 RFCIWTESAFRKLDDLY 264 >gi|322784371|gb|EFZ11342.1| hypothetical protein SINV_03492 [Solenopsis invicta] Length = 424 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 62/261 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQS--WRKRIGC-----SKSKGRSE 56 ++V E G +F + I+ + Q R + + +E Sbjct: 10 ITVYTEKSEPSGDTISLPSVFKAPIRPDIV--NVVHQLISTNIRQPYCVSKEAGHQTSAE 67 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G R + GG+ F P H + + AL Sbjct: 68 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHRVNVNQKRYALV 127 Query: 112 HALSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA-- 151 A++ ++ V+ + + + KTK V R + D+ Sbjct: 128 SAIAASGVPALVQSKGHLIQEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWNDIQKVYK 187 Query: 152 ----------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 LI+ G D+ + A RNIP ++L+ + +N+ + Sbjct: 188 SQRFRAGKGKMRNRRRIQRRGPLIVYGH--DQGIRKAFRNIPGVSLMNINKMNLLKLAPG 245 Query: 190 SKL---VL-SKSAIEALEDRF 206 + V+ +KSA E L+ + Sbjct: 246 GHVGRFVIWTKSAFEQLDALY 266 >gi|313756|emb|CAA29796.1| L1a protein [Xenopus laevis] Length = 396 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 12 ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLALGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|159473354|ref|XP_001694804.1| ribosomal protein L4, component of cytosolic 80S ribosome and 60S large subunit [Chlamydomonas reinhardtii] gi|158276616|gb|EDP02388.1| ribosomal protein L4 [Chlamydomonas reinhardtii] Length = 410 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 + V +++ GE +++ +F + I+ + + KR + + +E Sbjct: 8 VEVHSIETGEKAAQVAL-PAVFTAPIRPDIVRTIHTNMAKNKRQAYAVFMKAGHQTAAES 66 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111 TG ++ G G R + GG+ F P + + A+ Sbjct: 67 WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKINVNQKRYAVVS 126 Query: 112 -----------HALSDKFCSNDIM--VIDNLVSKECKTKYLVTRFRALDL---------S 149 A K ++ V+D+ V KT + + + S Sbjct: 127 ALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKTSKALEILKKIGALPDVEKSKDS 186 Query: 150 NAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 +L ++ D A RN+P + + V +N+ + Sbjct: 187 KSLRAGKGKMRNRRYVMRKGPLVVFAN-DEGISKAFRNLPGVEVTSVDRLNLLQLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 L + SKSA E L+ F Sbjct: 246 LGRFCIWSKSAFEKLDKVF 264 >gi|326578097|gb|ADZ95692.1| 60S ribosomal protein L4 [Nosema bombycis] Length = 334 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 83/256 (32%), Gaps = 59/256 (23%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA---- 58 ++++ NLDG D+ ++ + I+ V + R + SK Sbjct: 4 KINIYNLDGNTVKDTVEMPDVMTIEVRPDIIETVHSLERLNLRQPYAVSKYAGMQHSAAS 63 Query: 59 -YTGSKMYVQK---GTGRARHSSKS-VSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 TG M G+G R + + R G A + +R +A+ Sbjct: 64 WGTGRAMARCPRVAGSGTRRAGQGAFANFCRKGRMAHPIKTTRRWCRKVNLNLRRIAIAM 123 Query: 113 ALSD------------KFCSNDIM--VIDNLVSKECKTKYLVTRFRALDLSN-------- 150 A++ K + ++ ++ + V KTK + L + Sbjct: 124 AVAASSKPSFVQARGHKVENVKMIPLIVSDEVMSLTKTKDAFELIQNFGLEDEVKKVKDS 183 Query: 151 --------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 LI+ D A NI ++ L V ++++++ Sbjct: 184 KTLRAGKGKMRNRRFTKRKGVLIVHTNDSD---LRAFTNIQGVDQLNVDKMSIFELAPGG 240 Query: 188 RCSKLVL-SKSAIEAL 202 +L+L ++SA + L Sbjct: 241 HSGRLILWTESAFKKL 256 >gi|254564519|ref|XP_002489370.1| Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap [Pichia pastoris GS115] gi|238029166|emb|CAY67086.1| Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap [Pichia pastoris GS115] gi|328349799|emb|CCA36199.1| 60S ribosomal protein L4-B [Pichia pastoris CBS 7435] Length = 339 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 56/260 (21%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +++V +++G+ S+ +F + I+ V + KR + S + + Sbjct: 5 PQVTVISVEGKPSST-SLPLPAVFKAPIRGDIVQSVFTRINKNKRQAYAVSEKAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQGAFGNMCRGGRMFAPTKIWRKWHVRVNLNEKRYAT 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 L+ I +V+ N + KTK + +AL S+ LI Sbjct: 124 ASAIAATSVQSLVLARGHRIEQIAEIPLVVSNDLEAIQKTKDAIAALKALGASDDLIRVI 183 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 + D+ A RNIP + V+ + + + Sbjct: 184 KSKKLRAGKGKYRNRRFTQRRGPLIVFNEDKGLVKALRNIPGVETCNVRTLGLLQLAPGA 243 Query: 188 RCSKLVL-SKSAIEALEDRF 206 + V+ ++SA AL+ + Sbjct: 244 HLGRFVIWTESAFAALDSVY 263 >gi|168002086|ref|XP_001753745.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695152|gb|EDQ81497.1| predicted protein [Physcomitrella patens subsp. patens] Length = 403 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 57/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V+++DG +K + +F + ++A V + KR + S + +E Sbjct: 10 VTVQSVDGAEKSAQTTLPAVFLAPIRPDVVATVHTALAKNKRQAYAVSSKAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G G R + GG+ F P + + A+ Sbjct: 70 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKVNLNQKRYAIASA 129 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 L+ + +V+ + KT V + L Sbjct: 130 LAASAVPSLVLARGHKIEQVPEVPLVLSDGAEAIEKTSAAVKLLKTLGAYTDVEKVKASH 189 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 L++ G + A RNIP + ++ V +N+ + Sbjct: 190 AIRAGKGKMRNRRYVSRRGPLVVYGTEG-AKLVKAFRNIPGVEVVSVNRLNLLQLAPGGH 248 Query: 192 L----VLSKSAIEALEDRF 206 L V +KSA E L+D F Sbjct: 249 LGRFIVWTKSAFEKLDDIF 267 >gi|121718897|ref|XP_001276228.1| 60S ribosomal protein L4, putative [Aspergillus clavatus NRRL 1] gi|119404426|gb|EAW14802.1| 60S ribosomal protein L4, putative [Aspergillus clavatus NRRL 1] Length = 372 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 62/266 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +F + I+ +V + KR + S + +E Sbjct: 5 PTVTIATADGKASGATIPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQKRFATA 124 Query: 112 ---------HALSDK------FCSNDIMVIDNLVSKE---CKTKYLVTRFRALDLS---- 149 L + + V+++ + KTK V +A+ Sbjct: 125 SALAASSVPSLLFARGHRVANVAEVPL-VVESKTFENAAIAKTKAAVALLKAVGAGADLV 183 Query: 150 ------------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184 L++ ++D + A RNIP + V +N+ Sbjct: 184 KVQKSKKMRAGKGKMRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFALNLL 243 Query: 185 DILRCSKL----VLSKSAIEALEDRF 206 + L V + SA EAL+ + Sbjct: 244 QLAPGGHLGRFIVWTSSAFEALDQVY 269 >gi|213512258|ref|NP_001135255.1| 60S ribosomal protein L4-A [Salmo salar] gi|209155410|gb|ACI33937.1| 60S ribosomal protein L4-A [Salmo salar] gi|221220200|gb|ACM08761.1| 60S ribosomal protein L4-A [Salmo salar] Length = 388 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +S+ + GE G V +F + I+ V R G + + +E Sbjct: 8 ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+D+ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D+ A RNIP I L V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCII--YNQDQGVTKAFRNIPGITLQNVNKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+ + Sbjct: 246 VGRFCIWTESAFRKLDQLY 264 >gi|197632149|gb|ACH70798.1| ribosomal protein L4-b [Salmo salar] Length = 388 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +S+ + GE G V +F + I+ V R G + + +E Sbjct: 8 ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+D+ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D+ A RNIP I L V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCII--YNQDQGVTKAFRNIPGITLQNVNKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+ + Sbjct: 246 VGRFCIWTESAFRKLDQLY 264 >gi|221057215|ref|XP_002259745.1| 60S ribosomal subunit protein L4/L1 [Plasmodium knowlesi strain H] gi|193809817|emb|CAQ40521.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium knowlesi strain H] Length = 411 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 60/261 (22%) Query: 1 MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52 M + +V + + G + + +F + ++ V + S +R + Sbjct: 1 MATVRPVANVYSTKNKQVVGEVEI-PVVFQTPIRNDLIQEVFKNVSKNRRHPYAVKYEAG 59 Query: 53 --GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105 +E TG ++ G G R + GG F P + K Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKE 119 Query: 106 RSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS-- 149 + A+ +++ + I +V+ N + KTK + L L Sbjct: 120 KRYAVCSSIAASGVTSLVLARGHRISNIKEVPLVVSNDMESISKTKDALKFLITLGLKDE 179 Query: 150 -NALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 N LI + D + A RNIP ++L V +N+ Sbjct: 180 VNRLIKSKKVRAGKGKMRNRKYRMRNGPLIIYNKDSGVKKAFRNIPGVDLCKVTKLNLLK 239 Query: 186 ILRCSKL----VLSKSAIEAL 202 + + + S+SA + L Sbjct: 240 LAPGGSIGRLCIWSESAFKKL 260 >gi|225713364|gb|ACO12528.1| 60S ribosomal protein L4 [Lepeophtheirus salmonis] Length = 386 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 83/259 (32%), Gaps = 66/259 (25%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGIL----ARVLRWQSWRKRIGC-----SKSKGR 54 ++VR+ G G +F + ++ V + +R + + Sbjct: 10 VTVRSEKGLPAGSTVTLPAVFKAPIRPDVVSFIHHEVAK----NRRQPYAVNQDAGHQTS 65 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ +G G R + GG F P + + A Sbjct: 66 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKTFRRWHRKVNVAQKRYA 125 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKY---LVTRFRAL-DLSNA 151 + A++ + I +V+ + V KTK L+ R +A D+ Sbjct: 126 MCSAIASSGVPALVMAKGHQIQDVHEVPLVVQDKVESYTKTKDAMILLHRLKAWKDIDQV 185 Query: 152 ------------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 LI+ D + A RNIP + + V+ +N+ + Sbjct: 186 YKSKRMRPGKGKMRNRRRIQKLGPLIV--YNKDEGVRRAFRNIPGCDTIQVENLNLLKLA 243 Query: 188 RCSKL----VLSKSAIEAL 202 + + ++SA + L Sbjct: 244 PGGHVGRFCIWTESAFKKL 262 >gi|325119378|emb|CBZ54931.1| 50S ribosomal protein L4P, related [Neospora caninum Liverpool] Length = 416 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 53/231 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV + S+ +F + ++ V + +R + + +E Sbjct: 8 VSVYKTEDGTASGTSLMPSVFLSPLRPDLVRFVHTNLAKNRRQPYGVAPNAGYQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG F P + + A+ A Sbjct: 68 GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPNKTWRRWHRKVNVTQKRHAVASA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---------- 149 ++ + I +V+ V K KT+ V L Sbjct: 128 IAATGLPALVMARGHRIDEVPELPLVVSEKVEKVTKTREAVKILETLGCGAELERVRASA 187 Query: 150 NAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L ++ + D A RNIP + L V +N Sbjct: 188 KKLRAGKGKMRGRRTHIRRGPLVVYAE-DNGVTRAFRNIPGVELCKVDSLN 237 >gi|297825471|ref|XP_002880618.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] gi|297326457|gb|EFH56877.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 52/251 (20%) Query: 4 LSVRNLDGEDKG--VISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 ++V++LDG+ ++ D+ + +++ + S R + SK + Sbjct: 12 VTVQSLDGDMITDQTTTLPLPDVMKAPVRPDVVSHIHAQISNNSRQPYAVSKHAGHQTSA 71 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R ++ G+ F P + ++ A+ Sbjct: 72 ESWGTGRAVSRIPRVAGGGTHRAGQAALGNMCRSGRMFAPTKTYRRWHRRVNSNLKRHAI 131 Query: 111 RHALSD-----KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA------------- 145 A++ + I +V+ + V KT V + + Sbjct: 132 VSAIAATSALVMARGHKIENLPEFPLVVSDYVESVEKTSDAVKKAKDSIGIRSGVGKMRN 191 Query: 146 ---LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLS 195 + LI+ G + A RNIP I+L V+ + +L+ +V + Sbjct: 192 RPYVSRKGPLIVYGNEG-AKLVKAFRNIPGIDLCHVERL---SLLKLAPGGHLGRFVVWT 247 Query: 196 KSAIEALEDRF 206 KSA LE + Sbjct: 248 KSAFAKLELVY 258 >gi|14595075|emb|CAC43331.1| putative ribosomal protein L4 [Oncorhynchus mykiss] Length = 134 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +S+ + GE G V +F + I+ V R G + + +E Sbjct: 8 ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 114 LSDKFC 119 L+ C Sbjct: 128 LAAFAC 133 >gi|46125617|ref|XP_387362.1| hypothetical protein FG07186.1 [Gibberella zeae PH-1] Length = 352 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 78/265 (29%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG G +F + I+ +V + KR S S + +E Sbjct: 5 PTVTILGKDGAPTGATHAIPAVFTSPIRPDIVQQVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A+ Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRRWHIKVAVGQKRYAVC 124 Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRAL-------DLSN 150 AL+ + +VID+ V + L D+S Sbjct: 125 SALAASAAVPLLQARGHQVNSVPEVPLVIDSAVFEAAAIAKTSAALGLLKAVGAGEDVSK 184 Query: 151 A------------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I + D + A RNI + PV +N+ Sbjct: 185 VKNSKKIRAGKGKLRGRRHRQRRGPLVIYSPETDGKELVTAFRNITGVETCPVTALNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + A +AL+ + Sbjct: 245 LAPGGHLGRFIVWTSGAFKALDSIY 269 >gi|242211343|ref|XP_002471510.1| 60S ribosomal protein L4/L1/L2 [Postia placenta Mad-698-R] gi|220729369|gb|EED83244.1| 60S ribosomal protein L4/L1/L2 [Postia placenta Mad-698-R] Length = 372 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 57/260 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++VR+ GE + + + + ++ +V + + KR + S + +E Sbjct: 5 PTVNVRSTSGEASSSLPL-PAVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + R A+ Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQGQRRFAVV 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL--------- 148 L+ +I +VI + V KTK V ++L Sbjct: 124 SALAASALPSLVLARGHRIEEIEEVPLVISSEVESFAKTKQAVALLKSLKAYTDVVKVSN 183 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 S L ++ + D+ A RN+P + L+ V+ +N+ + Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNE-DKGIVKAFRNLPGVELVNVRRLNLLQLAPGG 242 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ ++SA L++ F Sbjct: 243 HLGRFVIWTESAFGLLDEVF 262 >gi|156536919|ref|XP_001608023.1| PREDICTED: similar to ribosomal protein L4 [Nasonia vitripennis] Length = 431 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 87/259 (33%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 ++V E G +F + ++ V + S R S SK +E Sbjct: 10 ITVFTEKSEASGETISLPSVFKAPIRPDVVNFVHQQVSKNSRQPYSVSKEAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNVNQKRYAIVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA---- 151 ++ ++ V+ + + + KTK V R + D+ Sbjct: 130 IAASGVPALVQSKGHMIQEVPEFPLVVSDKIQEYNKTKQAVIFLRRIKAWNDIQKVYKSQ 189 Query: 152 --------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 LI+ G D+ + A RNIP ++L+ + IN+ + Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIVYGN--DQGIRKAFRNIPGVDLMNINKINLLKLAPGGH 247 Query: 192 L---VL-SKSAIEALEDRF 206 + V+ +KSA E L+ + Sbjct: 248 VGRFVIWTKSAFEKLDALY 266 >gi|168005784|ref|XP_001755590.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693297|gb|EDQ79650.1| predicted protein [Physcomitrella patens subsp. patens] Length = 403 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 57/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V+ +DG DKG + +F + ++A V + KR + +K +E Sbjct: 10 VTVQGVDGADKGAQATLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSTKAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G G R + GG+ F P + + A+ Sbjct: 70 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIASA 129 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 L+ + +V+ + KT V +++ Sbjct: 130 LAASAVPSLVLARGHRIEQVPEVPLVLGDGAEGIEKTSLAVKLLKSVGAYTDVEKVKASH 189 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 L++ G + + RNIP + ++ V +N+ + Sbjct: 190 AIRAGKGKMRNRRYVSRRGPLVVYGTEG-AKLVKSFRNIPGVEVVSVNRLNLLQLAPGGH 248 Query: 192 L----VLSKSAIEALEDRF 206 L V +KSA E L+ + Sbjct: 249 LGRFIVWTKSAFEKLDSIY 267 >gi|46396651|sp|Q975I2|RL4_SULTO RecName: Full=50S ribosomal protein L4P Length = 266 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 68/260 (26%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + +L G I + F+ ++ ++ RV + + KGR +A Sbjct: 12 IFDLKGNKVEEIEL-PIFFSYPVRKDLIRRVFISEFTKALQ----PKGRDPMAGKRTSAL 66 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRH 112 +++ K TG A GG AF P V V + KK + LA+ Sbjct: 67 SFGINLGLARVPRVKTTGEAAL----APNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIIS 122 Query: 113 ALSDKFCSN--------------DIMVIDNLVSKECKTKYLVTRFRAL----DLSNAL-- 152 ALS N I+V+D++ K KTK ++ +L D+ Sbjct: 123 ALSATANMNFVKNRGHVFSIDTLPIIVVDDIT-KLTKTKEIIEVLESLKVYEDVERVKDR 181 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 + + + F AA NIP ++++ ++V + Sbjct: 182 IRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGH 241 Query: 189 CSKL-VLSKSAIEALEDRFK 207 +L + +KS+I+ L RF+ Sbjct: 242 PGRLTIYTKSSIDVLRKRFE 261 >gi|15920640|ref|NP_376309.1| 50S ribosomal protein L4P [Sulfolobus tokodaii str. 7] gi|15621423|dbj|BAB65418.1| 269aa long hypothetical 50S ribosomal protein L4 [Sulfolobus tokodaii str. 7] Length = 269 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 68/260 (26%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + +L G I + F+ ++ ++ RV + + KGR +A Sbjct: 15 IFDLKGNKVEEIEL-PIFFSYPVRKDLIRRVFISEFTKALQ----PKGRDPMAGKRTSAL 69 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRH 112 +++ K TG A GG AF P V V + KK + LA+ Sbjct: 70 SFGINLGLARVPRVKTTGEAAL----APNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIIS 125 Query: 113 ALSDKFCSN--------------DIMVIDNLVSKECKTKYLVTRFRAL----DLSNAL-- 152 ALS N I+V+D++ K KTK ++ +L D+ Sbjct: 126 ALSATANMNFVKNRGHVFSIDTLPIIVVDDIT-KLTKTKEIIEVLESLKVYEDVERVKDR 184 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 + + + F AA NIP ++++ ++V + Sbjct: 185 IRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGH 244 Query: 189 CSKL-VLSKSAIEALEDRFK 207 +L + +KS+I+ L RF+ Sbjct: 245 PGRLTIYTKSSIDVLRKRFE 264 >gi|65082|emb|CAA28843.1| unnamed protein product [Xenopus laevis] Length = 396 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 12 ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|148233066|ref|NP_001080545.1| 60S ribosomal protein L4-A [Xenopus laevis] gi|292495031|sp|P08429|RL4A_XENLA RecName: Full=60S ribosomal protein L4-A; AltName: Full=L1A gi|27882641|gb|AAH43895.1| Rpl-4 protein [Xenopus laevis] gi|77748123|gb|AAI06316.1| Rpl-4 protein [Xenopus laevis] gi|224828|prf||1202260A ribosomal protein L1a Length = 396 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 12 ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|91083757|ref|XP_971634.1| PREDICTED: similar to ribosomal protein L4e [Tribolium castaneum] gi|270006788|gb|EFA03236.1| hypothetical protein TcasGA2_TC013168 [Tribolium castaneum] Length = 404 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 87/256 (33%), Gaps = 59/256 (23%) Query: 4 LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 +SV N E+ G V +F + ++ V + S R + + +E Sbjct: 10 VSVYNEKSEEVKGETVVLPAVFKAPIRPDVVNFVHQQLSMNHRQAYCVSDKAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNVNQRRYALAS 129 Query: 113 ALSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 A++ ++ V+ + V + KTK V R + D+ Sbjct: 130 AVAASGVPALVMSKGHVIDQVPELPLVVSDKVQEMNKTKQAVQFLRRIKAWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D+ + A RNIP I+L+ V+ +N+ + Sbjct: 190 QRFRAGKGKMRNRRRIQRRGPLVV--YHKDQGLRRAFRNIPGIDLISVEKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEAL 202 + V+ ++SA + L Sbjct: 248 HVGRFVIWTESAFQRL 263 >gi|307205264|gb|EFN83644.1| 60S ribosomal protein L4 [Harpegnathos saltator] Length = 424 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 64/262 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V E G +F + ++ V + S R + + +E Sbjct: 9 ITVYTDKNEASGDAISLPSVFKAPIRPDVVNFVHQQISKNSRQPYCVSKEAGHQTSAESW 68 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + AL A Sbjct: 69 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRINVNQKRYALVSA 128 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRALDLSN--------- 150 ++ ++ V+ N + KTK V R + + N Sbjct: 129 IAASGVPALVQSKGHMIQEVPEFPLVVSNKIETYNKTKQAVIFLRRIKVWNDIQKVYKSQ 188 Query: 151 -------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC-- 189 LI+ G D A RNIP ++L+ + +N +L+ Sbjct: 189 RFRAGKGKMRNRRRIQRRGPLIVYG--KDEGLCKAFRNIPGVDLMNINKMN---LLKMAP 243 Query: 190 ----SKLVL-SKSAIEALEDRF 206 + V+ +KSA E L+ + Sbjct: 244 GGHVGRFVIWTKSAFEQLDALY 265 >gi|169617367|ref|XP_001802098.1| hypothetical protein SNOG_11861 [Phaeosphaeria nodorum SN15] gi|160703390|gb|EAT80905.2| hypothetical protein SNOG_11861 [Phaeosphaeria nodorum SN15] Length = 372 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 57/238 (23%) Query: 2 IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++V + GE ++V I + I+ V + +R + S + + Sbjct: 4 PTVTVISAKGESTKDTLTVPNVIQGQFIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + G+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFAT 123 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKEC---KTKYLVTRFRALD------ 147 AL+ +++ +VI + + KT V +A+ Sbjct: 124 ASALAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVALLKAVGAGADCE 183 Query: 148 ----------------------LSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L+I D + A RNIP + V +N Sbjct: 184 KAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMN 241 >gi|55926194|ref|NP_001007480.1| 60S ribosomal protein L4 [Gallus gallus] gi|53135834|emb|CAG32462.1| hypothetical protein RCJMB04_25p23 [Gallus gallus] Length = 421 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + ++ V R + S + +E Sbjct: 8 ISVYSEKGEASGKNVTLPAVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|147898584|ref|NP_001082721.1| 60S ribosomal protein L4-B [Xenopus laevis] gi|292495032|sp|P02385|RL4B_XENLA RecName: Full=60S ribosomal protein L4-B; AltName: Full=L1B gi|32822849|gb|AAH54956.1| Rpl4-b protein [Xenopus laevis] Length = 401 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 12 ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|899428|emb|CAA28844.1| ribosomal protein L1b (396 AA) [Xenopus laevis] gi|224829|prf||1202260B ribosomal protein L1b Length = 396 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE G +F + I+ V R + SK +E Sbjct: 7 ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 126 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 127 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 186 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 187 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 246 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 247 RFCIWTESAFRKLDDLY 263 >gi|170095954|ref|XP_001879197.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645565|gb|EDR09812.1| predicted protein [Laccaria bicolor S238N-H82] Length = 364 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 84/258 (32%), Gaps = 55/258 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++VR+ GE + + + + ++ +V + + KR + S + +E Sbjct: 5 PTVNVRSSTGEASTSLPL-PAVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + R A+ Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFAVV 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL-DLSNALII-- 154 L+ I +V+ + KTK V +AL S+ + + Sbjct: 124 SALAASALPSLVLARGHRIEQIEEVPLVVASATESFTKTKEAVALLKALHAYSDVVKVSN 183 Query: 155 -----------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 D A RN+P + L+ V+ +N+ + Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNLLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDR 205 L V+ ++ A L++ Sbjct: 244 LGRFVIWTEGAFALLDEV 261 >gi|169864162|ref|XP_001838693.1| Ras2 [Coprinopsis cinerea okayama7#130] gi|116500215|gb|EAU83110.1| Ras2 [Coprinopsis cinerea okayama7#130] Length = 371 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 55/259 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++VR++ GE + + + + ++ +V + + KR + S + +E Sbjct: 5 PTVNVRSVSGEASSSLPL-PAVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + R A+ Sbjct: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFAVV 123 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL--------- 148 L+ I +V+ + V KTK V +AL Sbjct: 124 SALAASALPSLVLARGHRIEQIEEVPLVVSSEVEAFTKTKQAVALLQALKAHADVVKVSN 183 Query: 149 -------SNALI----------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 L + D A RN+P + L+ V+ +N+ + Sbjct: 184 SRKIRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNLLQLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 L V+ ++ A L+D + Sbjct: 244 LGRFVIWTQGAFALLDDVY 262 >gi|195108985|ref|XP_001999073.1| GI24311 [Drosophila mojavensis] gi|193915667|gb|EDW14534.1| GI24311 [Drosophila mojavensis] Length = 401 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 75/258 (29%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + +ID + V + + + + Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRMKIWADIQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP I + V +N+ + + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETISVDKLNLLKLAPGGHV 249 Query: 193 ---VL-SKSAIEALEDRF 206 V+ ++SA L D F Sbjct: 250 GRFVIWTESAFARLNDLF 267 >gi|269866520|ref|XP_002652302.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220062780|gb|EED41754.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 244 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 58/235 (24%) Query: 1 MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----R 54 M+ ++V DG+ G I+ +F ++ + ++ + + R + S Sbjct: 1 MMNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGIN 182 L+I N L+A NI + L V +N Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN 230 >gi|66525285|ref|XP_392071.2| PREDICTED: 60S ribosomal protein L4 isoform 1 [Apis mellifera] Length = 429 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 56/258 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +++ E G +F + I+ V + S R + + +E Sbjct: 10 VTIYTDKNESSGDTISLPAVFKAPIRPDIVNFVHQQVSKNSRQPYCVSKEAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRINVNQKRYAMVSA 129 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 ++ ++ V+ + + + KTK + R +A + + Sbjct: 130 IAASGVPALVQSKGHMVQEIPELPLVVSDKIQEYNKTKQAVIFLRRIKAWNDIQKVYKSQ 189 Query: 153 --------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 +I Q D+ + A RNIP ++L+ + +N+ + + Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIVYHQ-DQGIRKAFRNIPGVDLMNINKMNLLKLAPGGHV 248 Query: 193 ---VL-SKSAIEALEDRF 206 V+ +KSA E L+ + Sbjct: 249 GRFVIWTKSAFEKLDALY 266 >gi|241950449|ref|XP_002417947.1| 60S ribosomal protein L4 subunit, putative [Candida dubliniensis CD36] gi|223641285|emb|CAX45665.1| 60S ribosomal protein L4 subunit, putative [Candida dubliniensis CD36] Length = 363 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 52/231 (22%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV ++ GE G + +FA + ++ V + KR + + + + Sbjct: 5 PQVSVISVKGEQ-GSSQLPLPAVFAAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 L+ + +V+ N KTK V +A+ ++ Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVTKTKDAVAVLKAIGAHKDVVKVI 183 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D A RN+P + V+ + Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHL 234 >gi|316973901|gb|EFV57444.1| 60S ribosomal protein L4-A [Trichinella spiralis] Length = 387 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 79/260 (30%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + G D+F + +++ + R + S + +E Sbjct: 6 VSVYDEKGNLTEETIKLPDVFKAPLRPDLVSFIHAQMRLNARQPYAVSRKAGHQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 66 GTGRAVSRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTSVWRRWHRRINVAQKRYAICSA 125 Query: 114 L------SDKFCSND---------IMVIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 + S ++V D L KTK V +A+ D+ Sbjct: 126 IAATGIPSLIMARGHSISEIPEVPLVVCDKLE-GYKKTKDAVAFLKAVKAWSDIEKVYNS 184 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 LII + + A RNIP I+ L V +N+ + Sbjct: 185 RRHRAGKGKMRNRRWKQKKGPLII--YNHNNGIKQAFRNIPGISFLQVDNLNLLKLAPGG 242 Query: 191 KL----VLSKSAIEALEDRF 206 L + + A + L + Sbjct: 243 HLGRFCIWTAGAFKKLNALY 262 >gi|255728927|ref|XP_002549389.1| 60S ribosomal protein L4-B [Candida tropicalis MYA-3404] gi|240133705|gb|EER33261.1| 60S ribosomal protein L4-B [Candida tropicalis MYA-3404] Length = 363 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 52/231 (22%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV ++ GE G + +F+ + ++ V + KR + + + + Sbjct: 5 PQVSVISVKGEQ-GSAQLPLPAVFSAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 L+ + +V+ N KTK V +A+ ++ Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVTKTKDAVAVLKAVGAHKDVVKVI 183 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D A RN+P + V+ + Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHL 234 >gi|171692867|ref|XP_001911358.1| hypothetical protein [Podospora anserina S mat+] gi|170946382|emb|CAP73183.1| unnamed protein product [Podospora anserina S mat+] Length = 361 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 82/264 (31%), Gaps = 58/264 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V DG+ G V +F+ + I+ V + KR S S + +E Sbjct: 5 PTVTVLGADGKATGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108 TG ++ G G R + G+ F P + + + Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124 Query: 109 ----ALRHALSDKFCSNDI-------MVIDNLVSK-ECKTKYLVTRFRALD----LSNA- 151 A A + + +VID+ KT V +A+ L Sbjct: 125 SALAASAVAPLLMARGHQVSTVPEVPLVIDSAAFGVASKTAAAVGLLKAVGAGPELEKVK 184 Query: 152 -----------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDIL 187 L++ D + RNIP + PV +N+ + Sbjct: 185 ASKKLRAGKGKLRGRRHRQRRGPLVVYSPSTDGKELVQGFRNIPGVETSPVDALNLLQLA 244 Query: 188 RCSKL---VL-SKSAIEALEDRFK 207 L V+ + +AI+ L+ ++ Sbjct: 245 PGGHLGRFVIWTSAAIKELDAVYE 268 >gi|226294222|gb|EEH49642.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb18] Length = 372 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ N +G+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + V+D+ + KTK + + + Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ +D ++ A RNIP + V +N+ Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA AL+ + Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDAIY 269 >gi|94993443|ref|YP_601541.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] gi|94546951|gb|ABF36997.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750] Length = 109 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRS 55 M +++ + G++ + +++ IF ++P + ++ V+ Q R + Sbjct: 1 MANVNLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQVLMRLKTVQQYQVV 60 Query: 56 EVAYTGSK 63 +V + K Sbjct: 61 DVNHGVKK 68 >gi|257076560|ref|ZP_05570921.1| 50S ribosomal protein L4P [Ferroplasma acidarmanus fer1] Length = 256 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 55/233 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61 ++ +V +++GE I + +F ++ ++ ++ + R S R S + G Sbjct: 1 MKTNVYSIEGEVTKEIEL-PQVFEIETREDLIHKAFRAISLSMRQPYGSSP-LAGTRRVG 58 Query: 62 SKMYVQKGTG---RARHSSKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLALRHALS 115 + G R S+ V G P + KK R LA A++ Sbjct: 59 HNLGPNHGISRIPRLASGSRGVLLASMVGGRSALSPRSDKVLYKKINKKERRLAKLSAIA 118 Query: 116 DKFCSNDI------------------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 I +V+++ + K K V L + Sbjct: 119 FTANKERILQRGHRISEESIEKLTFPVVVEDDIESITKVKDAVQVLSNLGVYDDVLRSKD 178 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 +L+I G ++ A ++P ++L + +++ Sbjct: 179 GKKIRAGRGKMRNRTYKQPKSLLIVGSSVES--LRAFASLPGVDLASLNSLSI 229 >gi|168002016|ref|XP_001753710.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695117|gb|EDQ81462.1| predicted protein [Physcomitrella patens subsp. patens] Length = 404 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 84/259 (32%), Gaps = 57/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V+++DG +KG + +F + ++ V + KR + S + +E Sbjct: 11 VTVQSVDGSEKGAQATLPAVFLAPIRPDVVGAVHSALAKNKRQPYAVSVKAGHQTSAESW 70 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G G R + GG+ F P + + A+ Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKINLNQKRYAIASA 130 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 L+ + +V+ + KT V +++ Sbjct: 131 LAASAIPSLVLARGHKIEQVPEVPLVLADGAEGIEKTSAAVKLLKSVGAYADVEKVKASH 190 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 L++ G + A RNIP + ++ V +N+ + Sbjct: 191 SIRAGKGKMRNRRYVSRRGPLVVYGTEG-AKLVKAFRNIPGVEVVSVNHLNLLQLAPGGH 249 Query: 192 L----VLSKSAIEALEDRF 206 L V +KSA E L+ + Sbjct: 250 LGRFIVWTKSAFEKLDVVY 268 >gi|68482001|ref|XP_715018.1| likely cytosolic ribosomal protein L4 [Candida albicans SC5314] gi|46436620|gb|EAK95979.1| likely cytosolic ribosomal protein L4 [Candida albicans SC5314] gi|238878218|gb|EEQ41856.1| 60S ribosomal protein L4-B [Candida albicans WO-1] Length = 363 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 52/231 (22%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV ++ GE G + +FA + ++ V + KR + + + + Sbjct: 5 PQVSVISVKGEQ-GSSQLPLPAVFAAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 L+ + +V+ N KTK V +A+ ++ Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVTKTKDAVAVLKAVGAHKDVVKVI 183 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D A RN+P + V+ + Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHL 234 >gi|194907117|ref|XP_001981490.1| GG11580 [Drosophila erecta] gi|195503641|ref|XP_002098736.1| RpL4 [Drosophila yakuba] gi|190656128|gb|EDV53360.1| GG11580 [Drosophila erecta] gi|194184837|gb|EDW98448.1| RpL4 [Drosophila yakuba] Length = 401 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVV--YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFARLNDLF 267 >gi|24650747|ref|NP_524538.2| ribosomal protein L4 [Drosophila melanogaster] gi|56405290|sp|P09180|RL4_DROME RecName: Full=60S ribosomal protein L4; AltName: Full=L1 gi|10726816|gb|AAG22173.1| ribosomal protein L4 [Drosophila melanogaster] gi|17862306|gb|AAL39630.1| LD21756p [Drosophila melanogaster] gi|220946742|gb|ACL85914.1| RpL4-PA [synthetic construct] gi|220956346|gb|ACL90716.1| RpL4-PA [synthetic construct] Length = 401 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVV--YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFARLNDLF 267 >gi|153217581|ref|ZP_01951262.1| 50S ribosomal protein L4 [Vibrio cholerae 1587] gi|124113469|gb|EAY32289.1| 50S ribosomal protein L4 [Vibrio cholerae 1587] Length = 44 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 27/43 (62%) Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 LAARN+ +++ V GI+ ++ K++++ +A++ +E+ Sbjct: 1 FLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 43 >gi|295657284|ref|XP_002789212.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb01] gi|226284459|gb|EEH40025.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb01] Length = 372 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ N +G+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + V+D+ + KTK + + + Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D ++ A RNIP + V +N Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLN 241 >gi|289621746|emb|CBI51657.1| unnamed protein product [Sordaria macrospora] Length = 361 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 81/264 (30%), Gaps = 58/264 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G V +F + I+ V + KR S S + +E Sbjct: 5 PTVTIIGADGKATGATEVLPKVFGAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124 Query: 112 HALS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALD----LSNA- 151 AL+ +++ S KT + +A+ + A Sbjct: 125 SALAASAAAPLLMARGHQVSSVPEVPLVIDSAAFSGANKTANALALLKAVGAGADVEKAK 184 Query: 152 -----------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDIL 187 L++ + D ++ RNI + PV +N+ + Sbjct: 185 ASKKLRAGKGKLRGRRHRQRRGPLVVYSAETDGKDLVQGFRNIAGVETSPVDALNLLQLA 244 Query: 188 RCSKL----VLSKSAIEALEDRFK 207 L V + +AI+ L+ ++ Sbjct: 245 PGGHLGRFIVWTSAAIKELDAVYE 268 >gi|300708062|ref|XP_002996219.1| hypothetical protein NCER_100725 [Nosema ceranae BRL01] gi|239605500|gb|EEQ82548.1| hypothetical protein NCER_100725 [Nosema ceranae BRL01] Length = 334 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 79/270 (29%) Query: 3 ELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEV 57 + + LDG I V + +F++ + I+ +V + R + S V Sbjct: 4 KTNCYELDGTTIKSTIDVPD-VFSVDIRSDIIEQVHSLERLNLRQPYAVSPDAGMQHSAV 62 Query: 58 AYTGSKMYVQKGTGRARHSSKS--------------VSQFRGGGKAFG-PVPIIGVHALP 102 ++ GTGRA + R G A +P Sbjct: 63 SW---------GTGRAIARCPRIGGGGSRRSGQGAFANFCRKGRMAHPTTTMRRWCRKIP 113 Query: 103 KKVRSLALRHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL 148 R +A+ +++ + I +V+ + + + KTK + +L Sbjct: 114 LNTRRIAIAMSIAASARPSFIEARGHRIENVKNIPLVVSDKIKELVKTKDAFEVIKNFNL 173 Query: 149 ----------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 L+I ++ A RNIP ++ L + Sbjct: 174 AEEVEKVKNSKSLRGTKGKMRNRRYRMRKGLLLIHDSPVE---LKAFRNIPGVDQLNINK 230 Query: 181 INVYDIL---RCSKLVL-SKSAIEALEDRF 206 +N+Y++ +L+L ++S+ + LE F Sbjct: 231 LNIYELAPGGHAGRLILWTESSFKKLESMF 260 >gi|225684915|gb|EEH23199.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb03] Length = 372 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ N +G+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + V+D+ + KTK + + + Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 L++ +D ++ A RNIP + V +N Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLN 241 >gi|226467131|emb|CAX76046.1| putative ribosomal protein L4 [Schistosoma japonicum] gi|226467137|emb|CAX76049.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 375 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 ++ + + +V+ V KTK V +A+ D+ Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + D A RNIP + L+ V+ +N Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALN 236 >gi|303287893|ref|XP_003063235.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455067|gb|EEH52371.1| predicted protein [Micromonas pusilla CCMP1545] Length = 396 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 79/261 (30%), Gaps = 62/261 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 ++V+N +G + E +F + I+ V + R + + +E Sbjct: 6 PTVTVQNGNGA---TCQLPE-VFLSPIRPDIVNAVHTGLNKNNRQAYAVFNKAGHQTAAE 61 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + K + A+ Sbjct: 62 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNLKQKRYAVC 121 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALD---------- 147 AL+ +M V+ + V KT V +++ Sbjct: 122 SALAASAVPALLMARGHAVETVPEVPLVVGDDVESIAKTAKAVALLKSIGAYADVEKVKE 181 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 L++ D A RNIP + L V + + + Sbjct: 182 SRNIRSGKGKMRNRRYVQRRGPLVVYAD--DDGITKAFRNIPGVELCSVDRLGLLTLAPG 239 Query: 190 SKL---VL-SKSAIEALEDRF 206 + ++ +K A E L+ F Sbjct: 240 GHVGRFIIWTKKAFEKLDAVF 260 >gi|56755229|gb|AAW25794.1| SJCHGC06667 protein [Schistosoma japonicum] gi|226467135|emb|CAX76048.1| putative ribosomal protein L4 [Schistosoma japonicum] gi|226471656|emb|CAX70909.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 375 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 ++ + + +V+ V KTK V +A+ D+ Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + D A RNIP + L+ V+ +N Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALN 236 >gi|115437794|ref|XP_001217901.1| 60S ribosomal protein L4-2 [Aspergillus terreus NIH2624] gi|114188716|gb|EAU30416.1| 60S ribosomal protein L4-2 [Aspergillus terreus NIH2624] Length = 372 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 84/266 (31%), Gaps = 62/266 (23%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +++ +G+ G ++ +F + I+ +V + KR + S + + Sbjct: 5 PTVTIATAEGKASG-ATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + G+ F P + R A Sbjct: 64 ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFAT 123 Query: 111 RHALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRALDLSN--- 150 AL+ + V+D+ + KTK + +AL + Sbjct: 124 ASALAASSVPALLFARGHRVANIPEVPLVVDSKTFEGAAVTKTKAAIALLQALGAGSELV 183 Query: 151 -------------------------ALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184 L++ ++D + A RNIP + V +N+ Sbjct: 184 KVQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLL 243 Query: 185 DILRCSKL----VLSKSAIEALEDRF 206 + L V S +A +AL+ + Sbjct: 244 QLAPGGHLGRFIVWSSAAFQALDQVY 269 >gi|237829767|ref|XP_002364181.1| 60s ribosomal protein L4, putative [Toxoplasma gondii ME49] gi|77696463|gb|ABB00910.1| 60S ribosomal subunit protein L4 [Toxoplasma gondii] gi|211961845|gb|EEA97040.1| 60s ribosomal protein L4, putative [Toxoplasma gondii ME49] gi|221481095|gb|EEE19503.1| 60S ribosomal protein L4, putative [Toxoplasma gondii GT1] gi|221507043|gb|EEE32647.1| 60S ribosomal protein L4, putative [Toxoplasma gondii VEG] Length = 416 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 53/231 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV + S+ +F + ++ V + +R + + +E Sbjct: 8 VSVYKPEDGTASGTSLMPSVFLSPLRPDLVRFVHTNMAKNRRQPYGVAPNAGYQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G G R + GG F P + + A+ A Sbjct: 68 GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPNKTWRRWHRKVNVTQKRHAVASA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL----------S 149 ++ + I +V+ + K KT+ V L + Sbjct: 128 VAATGLPALVMARGHRIDEVPELPLVVSEKLEKVSKTREAVKILETLGCTAELERVRASA 187 Query: 150 NAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L ++ + D A RNIP + L V +N Sbjct: 188 KKLRAGKGKMRGRRTHMRRGPLVVYAE-DNGVTRAFRNIPGVELCKVDSLN 237 >gi|45185016|ref|NP_982734.1| AAR191Cp [Ashbya gossypii ATCC 10895] gi|44980637|gb|AAS50558.1| AAR191Cp [Ashbya gossypii ATCC 10895] Length = 390 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 56/256 (21%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V L GE +F+ + I+ V + KR + S + +E Sbjct: 31 PQVTVHALTGESSSAALPLPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 90 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + + A Sbjct: 91 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 150 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL--------- 148 L+ I +V+ + + KTK V +A+ Sbjct: 151 SAIAASAVASLVLARGHRVEKIPEIPLVVSSDLESIKKTKEAVAALKAVGAHSDVVKVLK 210 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---L 187 S L ++ + D A RNIP + V + + + Sbjct: 211 SKKLRAGKGKYRNRRFTQRRGPLVVYAE-DNGIVNAFRNIPGVETANVASLGLLQLAPGA 269 Query: 188 RCSKLVL-SKSAIEAL 202 + V+ ++SA L Sbjct: 270 HLGRFVIWTESAFAKL 285 >gi|126274606|ref|XP_001387609.1| predicted protein [Scheffersomyces stipitis CBS 6054] gi|126213479|gb|EAZ63586.1| predicted protein [Pichia stipitis CBS 6054] Length = 363 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 52/231 (22%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV + GE + +F+ + I+ V + KR + S + + Sbjct: 5 PQVSVVSAKGEQTAT-QLPLPAVFSAPVRPDIVHSVFVRVNKNKRQAYAVSEKAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNHNEKRYAT 123 Query: 111 RH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153 L+ + +V+ N KTK V +A+ +I Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNDFESVTKTKDAVAVLKAVGAHKDVIKVI 183 Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGI 181 + D A RN+P + V+ + Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYSQDNGIVKALRNVPGVETSDVKHL 234 >gi|317032010|ref|XP_001393829.2| 60S ribosomal protein L4-B [Aspergillus niger CBS 513.88] Length = 390 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +FA + ++ +V + KR + S + +E Sbjct: 23 PTVTIAGADGKPTGATYPLPAVFASPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 82 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 83 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 142 Query: 112 HAL------SDKFCSNDIM--------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL S F + V+D+ + KTK V +A+ Sbjct: 143 SALAASSVPSLLFARGHRVANVPEVPLVVDSKTFENSAVTKTKAAVALLQAVGAGADLVK 202 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RNIP + V +N+ Sbjct: 203 VQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 262 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V S +A EAL+ + Sbjct: 263 LAPGGHLGRFIVWSSAAFEALDKVY 287 >gi|156094412|ref|XP_001613243.1| 60S ribosomal subunit protein L4/L1 [Plasmodium vivax SaI-1] gi|148802117|gb|EDL43516.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium vivax] Length = 411 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 56/237 (23%) Query: 1 MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52 M + +V + + G + + +F + ++ V + S +R + Sbjct: 1 MATVRPVANVYSTSNKQVVGEVEI-PVVFQTPIRSDLVQEVFKNVSKNRRHPYAVKLGAG 59 Query: 53 --GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105 +E TG ++ G G R + GG F P + K Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKVWRRWGRKVNLKE 119 Query: 106 RSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS-- 149 + A+ +++ + I +V+ N V KTK + L L Sbjct: 120 KRYAVCSSIAASGVTSLVLARGHRISNMKEVPLVVSNDVESISKTKEALKFLITLGLKEE 179 Query: 150 -NALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 N LI + D + A RNIP ++L V +N Sbjct: 180 VNRLIKSKKIRAGKGKMRNRKYRMRNGPLIIYSKDCGVKKAFRNIPGVDLCKVTKLN 236 >gi|31442365|ref|NP_852622.1| ribosomal protein L4 [Eimeria tenella strain Penn State] gi|31322457|gb|AAO40223.1| ribosomal protein L4 [Eimeria tenella] Length = 213 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108 S + ++ ++ + K + QKG G AR S ++GG K FGP I K + L Sbjct: 68 SNTINKNNLSKSTKKPWKQKGLGMARSGSFKSPLWKGGIKLFGPKNRIINIIFQIKKKKL 127 Query: 109 ALRHALSDK 117 + L +K Sbjct: 128 NFFYLLLNK 136 >gi|269863801|ref|XP_002651350.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220064689|gb|EED42707.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 252 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 68/259 (26%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RS 55 + ++V DG+ G I+ +F ++ + ++ + + R + S + Sbjct: 1 MNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHSA 59 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLAL 110 E TG K+ KG+G R + + F G+ P P R L Sbjct: 60 ESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLVT 119 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL-------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 120 AMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKVR 179 Query: 149 -------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDILR 188 L+I N L+A NI + L V +N +LR Sbjct: 180 ESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LLR 232 Query: 189 ------CSKLVL-SKSAIE 200 +L+L ++SA++ Sbjct: 233 LCPGGHLGRLILWTESALK 251 >gi|226467129|emb|CAX76045.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 375 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 L-------------------------------SDKFCSNDIMVIDNL-VSKECKTKYLVT 141 + S K + + V+ + + + Y Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKSKDAVKVLKAIRAWPDIQKVYNSQ 187 Query: 142 RFRALDLS--------NALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 RFRA I + D A RNIP + L+ V+ +N Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALN 236 >gi|108861843|gb|ABG21823.1| ribosomal protein L4-like protein [Schistosoma mansoni] Length = 375 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V ++G G +F + +L V R + S + +E Sbjct: 8 VNVYGVNGASTGSTIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSSKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 ++ + + +V+ V KTK V +A+ D+ Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + D A RNIP I L+ V+ +N Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIVIYKKDDGISRAFRNIPGITLINVKALN 236 >gi|50411126|ref|XP_457019.1| DEHA2B01210p [Debaryomyces hansenii CBS767] gi|49652684|emb|CAG85004.1| DEHA2B01210p [Debaryomyces hansenii] Length = 363 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 83/261 (31%), Gaps = 58/261 (22%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 ++SV + +G+ + +F+ + ++ V + KR + S + + Sbjct: 5 PQVSVVSAEGKQTST-QLPLPAVFSAPVRPDLVHSVFVRVNKNKRQAYAVSDKAGHQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVGGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHVKVNHNEKRYAT 123 Query: 111 RH----------ALS-----DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-- 153 L+ ++ ++V ++ S KTK + +A+ +I Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVANDFESVT-KTKDAIAVLKAVGAHKDVIKV 182 Query: 154 ------------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI--- 186 + D A RN+P + V+ + + + Sbjct: 183 IKSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGITKALRNVPGVETSDVKHLGLLQLAPG 242 Query: 187 LRCSKLVL-SKSAIEALEDRF 206 + V+ ++ A E+L+ + Sbjct: 243 AHLGRFVIWTQGAFESLDSVY 263 >gi|242791918|ref|XP_002481852.1| 60S ribosomal protein L4, putative [Talaromyces stipitatus ATCC 10500] gi|218718440|gb|EED17860.1| 60S ribosomal protein L4, putative [Talaromyces stipitatus ATCC 10500] Length = 372 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ +G+ G +F+ + I+ +V + KR + S + +E Sbjct: 5 PTVTIATAEGKPSGATHPLPTVFSSPIRPDIVQKVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNQGQRRFATA 124 Query: 112 HAL------SDKFCSNDIM--------VIDNLVSKE-------------------CKTKY 138 AL S F + V+++ + Sbjct: 125 SALAASSVPSLLFARGHRVANVPEVPLVVESKTFENAAVAKTKAAVALLKAVGAGPDLVK 184 Query: 139 LVTRFRALDLSNA------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 + ++ L++ + D + A RNIP + V +N+ Sbjct: 185 VQKSRKSRAGKGKMRGRRFRQRRGPLVVYNPETDGKELVKAFRNIPGVETSSVYALNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA AL++ + Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDEVY 269 >gi|86451932|gb|ABC97361.1| RPL4 [Streblomastix strix] Length = 492 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 84/264 (31%), Gaps = 62/264 (23%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55 M +V N DG+ + +V I + ++ V + +R + + + Sbjct: 5 MSLTTVYNTDGKARDTTAVPSVIRYSPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSA 64 Query: 56 EVAYTGS---KMYVQKGTGRARHS------SKSVSQFRGGGKAFGPVPIIGVHALPKKVR 106 E TG ++ G+G +R+ S K + + R Sbjct: 65 ESWGTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVW----RRWHRMVNVTQR 120 Query: 107 SLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNAL 152 A+ A++ + I +V+ + V + KTK V AL S+ + Sbjct: 121 RFAMCSAIAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAVKVLAALKASDDV 180 Query: 153 --------------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 ++ + A RNI +++ V +N+ D+ Sbjct: 181 KHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDL 240 Query: 187 LRCSKL----VLSKSAIEALEDRF 206 L + ++ A + L+ + Sbjct: 241 APGGHLGRFIIWTEGAYKKLDKLY 264 >gi|284009776|ref|NP_001165003.1| 60S ribosomal protein L4 [Xenopus (Silurana) tropicalis] gi|89266823|emb|CAJ83407.1| ribosomal protein L4 [Xenopus (Silurana) tropicalis] gi|189442539|gb|AAI67741.1| Unknown (protein for MGC:186651) [Xenopus (Silurana) tropicalis] gi|197246565|gb|AAI68597.1| Unknown (protein for MGC:185639) [Xenopus (Silurana) tropicalis] Length = 396 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 12 ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 71 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 72 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153 +S +I +V+++ V KTK L+ + +A + + Sbjct: 132 LAASALPALVMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + A RNIP I LL V +N+ + + Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVVYNENNGIVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 252 RFCIWTESAFRKLDDLY 268 >gi|134078379|emb|CAK40370.1| unnamed protein product [Aspergillus niger] Length = 372 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +FA + ++ +V + KR + S + +E Sbjct: 5 PTVTIAGADGKPTGATYPLPAVFASPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124 Query: 112 HAL------SDKFCSNDIM--------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL S F + V+D+ + KTK V +A+ Sbjct: 125 SALAASSVPSLLFARGHRVANVPEVPLVVDSKTFENSAVTKTKAAVALLQAVGAGADLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RNIP + V +N+ Sbjct: 185 VQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V S +A EAL+ + Sbjct: 245 LAPGGHLGRFIVWSSAAFEALDKVY 269 >gi|307181855|gb|EFN69295.1| 60S ribosomal protein L4 [Camponotus floridanus] Length = 551 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 58/252 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQS--WRKRIGC-----SKSKGRSE 56 ++V E G + +F + I+ + Q R + + +E Sbjct: 10 ITVYTDKNEASGDVISLPSVFKAPIRPDIV--NVVHQLISTNSRQPYCVSKEAGHQTSAE 67 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G R + GG+ F P H + + AL Sbjct: 68 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHRVNVNQKRYALV 127 Query: 112 HALSD------KFCSNDIM--------VIDNLVSKECKTKY---LVTRFRALDLSNALI- 153 A++ ++ V+ + + + KTK + R +A + + Sbjct: 128 SAIAASGVPALVQSKGHLIEEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWNDIQKVYK 187 Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D+ + A RNIP I+L+ + +N+ + Sbjct: 188 SQRFRAGKGKMRNRRRIHRRGPLIVYNQDQGIRKAFRNIPGISLMNINKMNLLKLAPGGH 247 Query: 192 L---VL-SKSAI 199 + V+ +KSA Sbjct: 248 VGRFVIWTKSAF 259 >gi|119183063|ref|XP_001242607.1| hypothetical protein CIMG_06503 [Coccidioides immitis RS] gi|303319587|ref|XP_003069793.1| 60S ribosomal protein L4-A, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109479|gb|EER27648.1| 60S ribosomal protein L4-A, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040732|gb|EFW22665.1| 60S ribosomal protein L4-A [Coccidioides posadasii str. Silveira] Length = 372 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +F + I+ V + +R + S + +E Sbjct: 5 PTVTIATADGKPSGATHPLPTVFTAPIRPDIVQSVHTGIAKNRRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATA 124 Query: 112 ---------HALSDK-FCSNDI----MVIDNLVSKEC---KTKYLVTRFRALDLS----- 149 L + ++I +V+D+ + KTK + ++L Sbjct: 125 SALAASSVPSLLFARGHRVSNIPEVPLVVDSKTFENGAITKTKAAIALLQSLGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L++ ++D + A RN+P + V +N+ Sbjct: 185 VQKSRKMRAGKGKLRGRRYRQRRGPLVVYNPEVDGKELVKAFRNVPGVETSSVFNLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + SA AL+ + Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDQIY 269 >gi|296242584|ref|YP_003650071.1| 50S ribosomal protein L4P [Thermosphaera aggregans DSM 11486] gi|296095168|gb|ADG91119.1| LSU ribosomal protein L4P [Thermosphaera aggregans DSM 11486] Length = 271 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 87/258 (33%), Gaps = 60/258 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TG 61 + V N +G + G + + +F L ++ ++ R + KGR +A T Sbjct: 16 VKVFNTEGAEAGSLELPP-VFQLPVRKDLIRRAFL----SAFTAMLQPKGRDPMAGRRTT 70 Query: 62 SKMYVQKGTGRAR-----HSSKSVSQFRGGG-KAFGPVP-IIGVHALPKKVR-------- 106 +K + G G AR + + G AF P P + + KK R Sbjct: 71 AKYWG-VGYGIARVPRLPNGTARFVVSARKGHIAFPPTPDRVLREEVNKKERAHAIASAL 129 Query: 107 ----SLALRHALSDKFCSNDI--MVIDNLVSKECKTKYLVTRFRALDL------------ 148 + L A F ++ + +V+D+ +K L L Sbjct: 130 AATSRIELVKARGHVFTADTLPIVVVDDAEENIGDSKRAREWLSKLGLWDDIVRSQEGTG 189 Query: 149 ---------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 +++ ++ A RN P +++ + + + Sbjct: 190 IRAGKGKMRGRRYVEPKSILFVLTSYEKPLAKAVRNFPGVDIATPGNLGILHLAPGGVPG 249 Query: 191 KL-VLSKSAIEALEDRFK 207 +L V SK+A+E + +F+ Sbjct: 250 RLTVFSKTALEEVSRKFE 267 >gi|226467127|emb|CAX76044.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 375 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 ++ + + +V+ V KTK V +A+ D+ Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVQSLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + D A RNIP + L+ V+ +N Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALN 236 >gi|256081834|ref|XP_002577172.1| 60S ribosomal protein L4 [Schistosoma mansoni] gi|238662469|emb|CAZ33409.1| 60S ribosomal protein L4, putative [Schistosoma mansoni] Length = 385 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 50/229 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V ++G G +F + +L V R + S + +E Sbjct: 18 VNVYGVNGASTGSTIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSSKAGHQTSAESW 77 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 78 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 137 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL----DLSNALI-- 153 ++ + + +V+ V KTK V +A+ D+ Sbjct: 138 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 197 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + D A RNIP I L+ V+ +N Sbjct: 198 RFRAGKGKMRNRRRIQKRGPIVIYKKDDGISRAFRNIPGITLINVKALN 246 >gi|195574444|ref|XP_002105199.1| GD21356 [Drosophila simulans] gi|194201126|gb|EDX14702.1| GD21356 [Drosophila simulans] Length = 401 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 80/260 (30%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E G +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKGKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVV--YDKDEGLRQAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFARLNDLF 267 >gi|255089284|ref|XP_002506564.1| predicted protein [Micromonas sp. RCC299] gi|226521836|gb|ACO67822.1| predicted protein [Micromonas sp. RCC299] Length = 395 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 75/247 (30%), Gaps = 59/247 (23%) Query: 16 VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQ 67 + + E +F + I+ V + R + +K +E TG ++ Sbjct: 16 TVQLPE-VFLSPIRPDIVNAVHTGLNKNNRQAYAVNKRAGHQTAAESWGTGRAVSRIPRV 74 Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIM- 124 G G R + GG+ F P + K + A+ AL+ + +M Sbjct: 75 PGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNLKQKRYAVCSALAASAVPSLLMA 134 Query: 125 -------------VIDNLVSKECKTKYLVTRFRALD------------------------ 147 V+D+ KT V + + Sbjct: 135 RGHHVESVPEVPLVLDDSSEAITKTAKAVKLLQEVGAYADVEKVKASRNLRSGKGKMRNR 194 Query: 148 ----LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAI 199 L++ D A RNIP + L V + + + + ++ +KSA Sbjct: 195 RYVQRKGPLVV--YANDSGITKAMRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAF 252 Query: 200 EALEDRF 206 E L+ + Sbjct: 253 EKLDSIY 259 >gi|18313002|ref|NP_559669.1| 50S ribosomal protein L4P [Pyrobaculum aerophilum str. IM2] gi|46396650|sp|Q8ZW51|RL4_PYRAE RecName: Full=50S ribosomal protein L4P gi|18160503|gb|AAL63851.1| ribosomal protein L4 [Pyrobaculum aerophilum str. IM2] Length = 283 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 73/235 (31%), Gaps = 61/235 (25%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V +DG I + F + ++ R + KG E G Sbjct: 28 KLKVYGIDGAYVADIE-APLHFLEPIRPDLIRRAYLSALSARFQ----PKGVYE--GAGK 80 Query: 63 KMYVQK---GTGRARH----SSK-----SVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLA 109 + + G G AR S RGG +A P +H + KK + LA Sbjct: 81 EHSCESFGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLA 140 Query: 110 LRHAL------SDKFCSNDI--------MVIDNLVSKECKTKYLVTRFRALDL------- 148 +R A+ S + +V+ K + K F AL L Sbjct: 141 IRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERA 200 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 ++++ L+ A RN P ++++ V +N+ Sbjct: 201 AEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNI 255 >gi|168014976|ref|XP_001760027.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688777|gb|EDQ75152.1| predicted protein [Physcomitrella patens subsp. patens] Length = 404 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 57/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V+++DG +KG + +F + ++A V + KR + S + +E Sbjct: 11 VTVQSIDGGEKGAQASLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSVKAGHQTSAESW 70 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G G R + GG+ F P + + A+ Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIASA 130 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 L+ + +V+ + KT V + + Sbjct: 131 LAASAVPSLVLARGHKIEQVPEVPLVLADGAEHIEKTSAAVKLLKLMGAYADVEKVKASH 190 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 L++ G + A RNIP + ++ V +N+ + Sbjct: 191 SIRAGKGKMRNRRYVSRRGPLVVYGTEG-AKLVKAFRNIPGVEIVSVDRLNLLQLAPGGH 249 Query: 192 L----VLSKSAIEALEDRF 206 L + +KSA E L+ F Sbjct: 250 LGRFIIWTKSAFEKLDSVF 268 >gi|320163444|gb|EFW40343.1| ribosomal protein L4 [Capsaspora owczarzaki ATCC 30864] Length = 397 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 81/261 (31%), Gaps = 61/261 (23%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 + V + + + V SV+ +F + ++ V + R + S + + Sbjct: 7 VQVFSHEAANTKVASVALPAVFKAPIRPDVVTSVHTSMNKNHRQAYAVSEYAGHQTSAIS 66 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ G G R + GG+ F P + R A Sbjct: 67 WGTGRAVARIPRVSGGGTHRAGQGAYGNMCRGGRMFAPTKTWRKWHRKINVNQRRFATCS 126 Query: 113 AL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALDL--------SN 150 AL S F + V+ N V KTK V + + + Sbjct: 127 ALAASAIPSLVFARGHKIDGINEVPLVVANGVEALNKTKAAVAFLKLVGAYADVEKVKES 186 Query: 151 ALIIDG------------------CQLDRNFQLAARNIPNINLLPVQGINVYDILR---- 188 + G + D A RNIP + L+ V +N +L+ Sbjct: 187 RKVRTGQGKMRNRRHVQRLGPMIVYRNDNGITRAFRNIPGVELIQVDRLN---LLKLAPG 243 Query: 189 ---CSKLVLSKSAIEALEDRF 206 L+ +++A E L+ + Sbjct: 244 GHLGRFLIWTQAAFERLDALY 264 >gi|327301521|ref|XP_003235453.1| 60S ribosomal protein [Trichophyton rubrum CBS 118892] gi|326462805|gb|EGD88258.1| 60S ribosomal protein [Trichophyton rubrum CBS 118892] Length = 373 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 81/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + +G+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVTVISAEGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDN--LVSKE-CKTKYLVTRFRALDLS----- 149 AL+ + V+D+ KTK V+ +A+ Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKCFQGDALTKTKAAVSLLQAVGAGADLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I ++D + A RNIP + V +N+ Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V S +A AL++ + Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269 >gi|94991545|ref|YP_599644.1| 50S ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] gi|94545053|gb|ABF35100.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096] Length = 109 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWR-----KRIGCSKSKGRS 55 M + + + G++ + +++ IF ++P + ++ V+ Q R+ + Sbjct: 1 MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASFAKVLMRLKTVQQYQVV 60 Query: 56 EVAYTGSK 63 +V + K Sbjct: 61 DVNHGVKK 68 >gi|212535050|ref|XP_002147681.1| 60S ribosomal protein L4, putative [Penicillium marneffei ATCC 18224] gi|210070080|gb|EEA24170.1| 60S ribosomal protein L4, putative [Penicillium marneffei ATCC 18224] Length = 372 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ +G+ G +F+ + I+ +V + KR + S + +E Sbjct: 5 PTVTIATAEGKPSGATYPLPTVFSSPIRPDIVQKVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNQGQRRFATA 124 Query: 112 HAL------SDKFCSNDIM--------VIDNLVSKE-------------------CKTKY 138 AL S F + V+++ + Sbjct: 125 SALAASSVPSLLFARGHRVASVPEVPLVVESKTFENAAIAKTKAAIALLKAVGAGPDLVK 184 Query: 139 LVTRFRALDLSNA------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 + + L++ + D + A RNIP + V +N+ Sbjct: 185 VQKSRKTRAGKGKMRGRRFRQRRGPLVVYNPETDGKELVKAFRNIPGVETSSVYALNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V + +A AL++ + Sbjct: 245 LAPGGHLGRFIVWTSAAFAALDEVY 269 >gi|195395011|ref|XP_002056130.1| GJ10395 [Drosophila virilis] gi|194142839|gb|EDW59242.1| GJ10395 [Drosophila virilis] Length = 401 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQPYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + VID + V + + + + Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRLKVWADIQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP I + V +N+ + + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYHKDEGLRKAFRNIPGIETISVDKLNLLKLAPGGHV 249 Query: 193 ---VL-SKSAIEALEDRF 206 V+ ++SA L D F Sbjct: 250 GRFVIWTESAFSRLNDLF 267 >gi|268563999|ref|XP_002638989.1| C. briggsae CBR-RPL-4 protein [Caenorhabditis briggsae] gi|187022098|emb|CAP38869.1| CBR-RPL-4 protein [Caenorhabditis briggsae AF16] Length = 345 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 83/258 (32%), Gaps = 56/258 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI----GCSKSKG-RSEVA 58 ++V + E +F + +++ + KR K +E Sbjct: 7 VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNKRQAHAVNTKAGKQHSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG F P V + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126 Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVT----------------- 141 ++ D+ ++V D + S KTK VT Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKIESFR-KTKEAVTFLRRSHLWADIEKVYHS 185 Query: 142 --------RFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189 + R L + D A RNIP +++L V+ +N+ + Sbjct: 186 KRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVLNVERLNLLKLAPGGHL 245 Query: 190 SKLVL-SKSAIEALEDRF 206 +LV+ ++SA + L+ + Sbjct: 246 GRLVIWTESAFKKLDAIY 263 >gi|126277469|ref|XP_001376078.1| PREDICTED: similar to ribosomal protein L4 [Monodelphis domestica] Length = 435 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + G+ G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGDVSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNLLRLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|326468935|gb|EGD92944.1| 60S ribosomal protein L4-A [Trichophyton tonsurans CBS 112818] gi|326480086|gb|EGE04096.1| 60S ribosomal protein L4-A [Trichophyton equinum CBS 127.97] Length = 373 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V + +G+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVTVISAEGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124 Query: 112 HALSDKFCSNDIM--------------VID--NLVSKE-CKTKYLVTRFRALDLS----- 149 AL+ + V+D + KTK V +A+ Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKSFQGDALTKTKAAVALLQAVGAGADLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I ++D + A RNIP + V +N+ Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V S +A AL++ + Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269 >gi|17508669|ref|NP_491416.1| Ribosomal Protein, Large subunit family member (rpl-4) [Caenorhabditis elegans] gi|3914700|sp|O02056|RL4_CAEEL RecName: Full=60S ribosomal protein L4 gi|1947110|gb|AAC24253.1| Ribosomal protein, large subunit protein 4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 345 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 74/253 (29%), Gaps = 54/253 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI----GCSKSKG-RSEVA 58 ++V + E +F + +++ + +R K +E Sbjct: 7 VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG F P V + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126 Query: 114 LSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI---------------- 153 ++ VID + V FR + + Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186 Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 + D A RNIP ++++ V+ +N+ + Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLG 246 Query: 191 KLVL-SKSAIEAL 202 +L++ ++SA + L Sbjct: 247 RLIIWTESAFKKL 259 >gi|92090659|sp|Q28346|RL4_CANFA RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal protein L1 gi|187609301|pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 421 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 114 LSDK-------FCSNDI-------MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ + I +V+++ V KTK L+ + +A + + Sbjct: 128 LACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A R P I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 246 VGRFCIWTESAFRKLDDLY 264 >gi|315049263|ref|XP_003174006.1| 60S ribosomal protein L4-A [Arthroderma gypseum CBS 118893] gi|311341973|gb|EFR01176.1| 60S ribosomal protein L4-A [Arthroderma gypseum CBS 118893] Length = 373 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 82/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ + DG+ G +F + I+ V + KR + S + +E Sbjct: 5 PTVSIASADGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKE---CKTKYLVTRFRALDLS----- 149 AL+ + V+D+ + KTK +T +A+ Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKAFEGDALTKTKAAITLLQAIGAGPDLVK 184 Query: 150 -----------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L+I ++D + A RNIP + V +N+ Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244 Query: 186 ILRCSKL----VLSKSAIEALEDRF 206 + L V S +A AL++ + Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269 >gi|1487948|emb|CAA68182.1| ribosomal protein L4 [Canis sp.] Length = 420 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 7 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 126 Query: 114 LSDK-------FCSNDI-------MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ + I +V+++ V KTK L+ + +A + + Sbjct: 127 LACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 186 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A R P I LL V +N+ + Sbjct: 187 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGH 244 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L+D + Sbjct: 245 VGRFCIWTESAFRKLDDLY 263 >gi|195352975|ref|XP_002042986.1| GM16362 [Drosophila sechellia] gi|194127051|gb|EDW49094.1| GM16362 [Drosophila sechellia] Length = 411 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 81/268 (30%), Gaps = 65/268 (24%) Query: 4 LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E G +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKGKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRALDL--------SN 150 A++ + VID + K KTK V R L + +N Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKRANN 189 Query: 151 ALI----------------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L+ + D + A RNIP I + V +N Sbjct: 190 WLLYWWCTSRSASVLAVVPCATVARIARRGPLVVYDKDEGLRQAFRNIPGIETINVDKLN 249 Query: 183 VYDILRCSKL---VL-SKSAIEALEDRF 206 + + + V+ ++SA L D F Sbjct: 250 LLKLAPGGHVGRFVIWTESAFARLNDLF 277 >gi|330800965|ref|XP_003288502.1| 60S ribosomal protein L4 [Dictyostelium purpureum] gi|325081462|gb|EGC34977.1| 60S ribosomal protein L4 [Dictyostelium purpureum] Length = 368 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 80/260 (30%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58 + V + + + G + + + + ++ V + R + + +E Sbjct: 7 VQVFDAENKVVGKVRL-PSVLTTPIRPDLVNFVHTQINKNDRQAYGAAPYAGEQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G+G R + GG+ +GP + + A+ Sbjct: 66 GTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSA 125 Query: 113 -------ALSDK-------FCSNDIMVIDNLVSKECKTKYLVTRFRALD----------- 147 AL +++ + + KTK V + ++ Sbjct: 126 LAASAVPALVMARGHRISGINEVPLVIANESIETVNKTKAAVALLKKVNAYADVEKVIDS 185 Query: 148 -----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ + LA RNIP + + VQ +N+ + Sbjct: 186 KHIRAGAGKSRNRRYKVRKGPLVVTTGKS--KLALAFRNIPGVEIANVQRLNLLKLAPGG 243 Query: 191 KL----VLSKSAIEALEDRF 206 L + +KSA E L+ F Sbjct: 244 HLGRFIIWTKSAFEQLDQVF 263 >gi|308498083|ref|XP_003111228.1| CRE-RPL-4 protein [Caenorhabditis remanei] gi|308240776|gb|EFO84728.1| CRE-RPL-4 protein [Caenorhabditis remanei] Length = 345 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 54/253 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI----GCSKSKG-RSEVA 58 ++V + E +F + +++ ++ KR K +E Sbjct: 7 VTVYDEKYEATQSQIRLPSVFRTPIRPDMVSFIVDQVRRNKRQAHAVNTKAGKQHSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG F P V + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126 Query: 114 LS---------------DKFCSNDIMVIDNLVS------------------------KEC 134 ++ D+ ++V D + S Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKIESFRKTKEAVTFLRRSHLWADIEKVYNSK 186 Query: 135 KTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 + + + R L + D A RNIP +++L V+ +N+ + Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVLNVERLNLLKLAPGGHLG 246 Query: 191 KLVL-SKSAIEAL 202 +L++ ++SA + L Sbjct: 247 RLIIWTESAFKKL 259 >gi|291222349|ref|XP_002731171.1| PREDICTED: ribosomal protein L4-like [Saccoglossus kowalevskii] Length = 400 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 ++V + E G +F + I+ V R + SK +E Sbjct: 10 INVYSEKNELSGTTITLPAVFKAPIRPDIVNFVHANLRKNSRQPYAVSKAAGHQTSAESW 69 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 70 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRRVNVNQKRYAMCSA 129 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-LSNALII---- 154 ++ + I +VI + V + KTK V R S+ + Sbjct: 130 IASTGIPALIMSKGHRIEEIPEVPLVIADKVQEFKKTKEAVAFLRKFKAWSDIQKVYKSK 189 Query: 155 ---------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 D A RNIP I LL V +N+ + + Sbjct: 190 RMRAGKGKMRNRRRIQRLGPCIIYDQDNGLTRAFRNIPGITLLNVSKLNLLRVAPGGHVG 249 Query: 193 ---VLSKSAIEALEDRF 206 + ++SA L++ + Sbjct: 250 RFCIWTESAFRKLDNLY 266 >gi|19173410|ref|NP_597213.1| 60S RIBOSOMAL PROTEIN L4 [Encephalitozoon cuniculi GB-M1] gi|19170999|emb|CAD26389.1| 60S RIBOSOMAL PROTEIN L4 [Encephalitozoon cuniculi GB-M1] Length = 335 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 63/244 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RSEVAYTGS---KMYVQKGTGR 72 ++F++ +Q ++ + + R + SK +E TG ++ KG G Sbjct: 22 PEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGGT 81 Query: 73 ARHSSKS-VSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH------------ALSDKF 118 R + + R G A + + + +A A + Sbjct: 82 RRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQASLVEARGHRI 141 Query: 119 CSNDI--MVIDNLVSKECKTKYLVTRFRALDLSNAL------------------------ 152 + +++ + ++K KTK V R L+++ L Sbjct: 142 SDVKMLPIIVSDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQR 201 Query: 153 ---IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR------CSKLVL-SKSAIEAL 202 +I + L RNI ++ + + + D+L +L++ ++SA E L Sbjct: 202 KGILIVHGESSE--MLGFRNIRGVDQMSIDSL---DLLELAPGGVAGRLIIWTESAFEKL 256 Query: 203 EDRF 206 + F Sbjct: 257 DKIF 260 >gi|330835824|ref|YP_004410552.1| 50S ribosomal protein L4P [Metallosphaera cuprina Ar-4] gi|329567963|gb|AEB96068.1| 50S ribosomal protein L4P [Metallosphaera cuprina Ar-4] Length = 263 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 95/258 (36%), Gaps = 60/258 (23%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--T 60 E+ V +L G I + IF+ ++ ++ RV + KGR +A T Sbjct: 9 EIQVLDLSGNKNKSI-LLPSIFSYPIRKDLIRRVFHSSFTKGLQ----PKGRDPMAGKRT 63 Query: 61 GSKMYVQKGTGRARHSSKS-------VSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRH 112 +K + G AR GG AF P I +H + ++ + +A+ Sbjct: 64 TAKSFGIN-LGLARVPRVRGAGEGALAPNTVGGRLAFPPSTIERIHEEVNEREKRMAIVS 122 Query: 113 ALSDKFCSND-------------IMVIDNLVSKECKTKYLVTRFRALDLSNAL------- 152 AL+ + ++V+D+L K KTK L L L L Sbjct: 123 ALASTTVKDVVTKRGHRFTGELPLVVVDDLG-KISKTKELQDILIKLGLEAELERASYRR 181 Query: 153 -------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 ++ AA N+P ++++ + ++V + Sbjct: 182 IRAGKGKMRGRKYKRTVGPLLVVHDYSLPVVKAALNLPGVDIVSAKDVSVIHLAPGGHPG 241 Query: 191 KLVL-SKSAIEALEDRFK 207 +LV+ ++S+I L++RFK Sbjct: 242 RLVIYTESSINILQNRFK 259 >gi|47225873|emb|CAF98353.1| unnamed protein product [Tetraodon nigroviridis] Length = 343 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 24/171 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV GE G V +F + ++ V R + S + +E Sbjct: 7 ISVYTEKGESTGKNVVMPAVFKAPIRPDVVNFVHTNMRKNNRQPYAVSELAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 126 Query: 114 ----------LSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150 +S +I +V+++ V KTK V + L N Sbjct: 127 VAASAIPALVMSKGHRIEEIPEVPLVVEDKVEGYKKTKEAVLLLKKLKAWN 177 >gi|195453977|ref|XP_002074029.1| GK12825 [Drosophila willistoni] gi|194170114|gb|EDW85015.1| GK12825 [Drosophila willistoni] Length = 427 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 75/258 (29%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 36 VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 95 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 96 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKVNVNQRRYALVS 155 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + +ID + V + + + + Sbjct: 156 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRLKIWADIQKVYKS 215 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP I + V +N+ + + Sbjct: 216 QRFRAGRGTMRDRRRIARRGPLVVYHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 275 Query: 193 ---VL-SKSAIEALEDRF 206 V+ ++SA L D F Sbjct: 276 GRFVIWTESAFSRLNDLF 293 >gi|212274759|ref|NP_001130220.1| hypothetical protein LOC100191314 [Zea mays] gi|194688582|gb|ACF78375.1| unknown [Zea mays] gi|219885387|gb|ACL53068.1| unknown [Zea mays] Length = 404 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 89/261 (34%), Gaps = 59/261 (22%) Query: 4 LSVRNLDGE-DKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +SVR L+G+ + V D+ + I+ V + S R + S + +E Sbjct: 9 VSVRALEGDMATDSVGVPLPDVLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSAE 68 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + GG+ F P + +R +A+ Sbjct: 69 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAIA 128 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD---------- 147 AL+ + + +V+ + KT + + L Sbjct: 129 SALAATAVPSLVLARGHRVEYVPELPLVVSDSAESIEKTAQAIKVLKQLGASADADKAKD 188 Query: 148 ------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 LI+ G + + A RN+P +++ V+ +N+ D+ Sbjct: 189 SVSIRPGKGKMRNRRYINRKGPLIVYGAEGSK-IVKAFRNLPGVDVANVERLNLLDLAPG 247 Query: 190 SKL---VL-SKSAIEALEDRF 206 L V+ ++ A + L++ + Sbjct: 248 GHLGRFVIWTECAFKKLDEVY 268 >gi|47199984|emb|CAF87922.1| unnamed protein product [Tetraodon nigroviridis] Length = 72 Score = 54.7 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 +L + A + +IN++P G+NV+ +L+ LVL+ + LED+ Sbjct: 1 SEELPEDVLQATATLKSINVIPALGLNVHSLLKHQALVLTLETLRFLEDKL 51 >gi|282933501|ref|ZP_06338874.1| 50S ribosomal protein L4 [Lactobacillus jensenii 208-1] gi|281302375|gb|EFA94604.1| 50S ribosomal protein L4 [Lactobacillus jensenii 208-1] Length = 38 Score = 54.7 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 24/36 (66%) Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 N+ ++PV G+NV D + KL+L++ A++ +E+ Sbjct: 2 ENVKVVPVNGLNVVDAVNYDKLILTQDAVKRIEEVL 37 >gi|255955813|ref|XP_002568659.1| Pc21g16520 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590370|emb|CAP96549.1| Pc21g16520 [Penicillium chrysogenum Wisconsin 54-1255] Length = 370 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 58/263 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ +G+ G +F+ + I+ V + KR + S + +E Sbjct: 5 PTVSIATAEGKPSGASHPLPTVFSAPIRPDIVQSVHTGMAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + R A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124 Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE-CKTKYLVTRFRALDLS------- 149 AL+ + + +V+D+ KTK + +A+ Sbjct: 125 SALAASASPALLFARGHRVANVPEVPLVVDSKAVDSLNKTKAAIALLQAVGAGPDLVKVQ 184 Query: 150 ---------------------NALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDIL 187 L++ + D ++ A RNIP + PV +N+ + Sbjct: 185 KSRKMRAGKGKLRNRRFRQRRGPLVVYNPETDGKDLVKAFRNIPGVETSPVFSLNLLQLA 244 Query: 188 RCSKL---VL-SKSAIEALEDRF 206 L V+ + +A +AL+ + Sbjct: 245 PGGHLGRFVIWTSTAFQALDQVY 267 >gi|300120651|emb|CBK20205.2| unnamed protein product [Blastocystis hominis] gi|300122378|emb|CBK22949.2| unnamed protein product [Blastocystis hominis] gi|300123878|emb|CBK25149.2| Ribosomal protein L4/L1e [Blastocystis hominis] Length = 376 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 60/261 (22%) Query: 4 LSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK----GRSEV 57 +SV +++ + + + +F + ++ V + R + K S + Sbjct: 10 VSVYSVETANKIVSTVPL-PSVFTAPIRTDVVQFVHTNLNKNHRQPYAVFKRAGHQHSAI 68 Query: 58 AYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 ++ +++ G G AR + + G+ F P + + AL Sbjct: 69 SWGTGRAVARVPRVSGGGTARSGQGAFANMCRKGRMFAPTKIWRKWHRKVNVNQKRYALV 128 Query: 112 H--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL-------- 148 AL + I V+D+ + K KTK V+ + Sbjct: 129 SALAASAVPAL-VMARGHKIDGVSEIPFVVDDALCKLTKTKEAVSFLQKNGCYADVERVS 187 Query: 149 SNALI-------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189 + I + + L RNIP + L V +NV + Sbjct: 188 ESKKIRCGKGKMRNRRYTMRVGPMVVYADGEEAVALPFRNIPGVELCNVNRMNVLRMAPG 247 Query: 190 SKL---VL-SKSAIEALEDRF 206 + V+ +K+A E LE + Sbjct: 248 GHVGRFVIWTKAAFERLEALY 268 >gi|119498945|ref|XP_001266230.1| 60S ribosomal protein L4, putative [Neosartorya fischeri NRRL 181] gi|119414394|gb|EAW24333.1| 60S ribosomal protein L4, putative [Neosartorya fischeri NRRL 181] Length = 373 Score = 54.3 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 62/266 (23%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55 +++ DG+ G ++ +F + I+ +V + KR + S + + Sbjct: 5 PTVTIATADGKPSG-ATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + G+ F P + + A Sbjct: 64 ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFAT 123 Query: 111 RHAL------SDKFCSNDIM--------VIDNLVSKEC---------------------- 134 AL S F + V+++ + Sbjct: 124 ASALAASSVPSLLFARGHRIANVPEVPLVVESKTFENAAIAKTKAAIALLKAVGAGAELV 183 Query: 135 ---KTKYLVTRFRALDLSNA------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184 K+K + L L++ ++D + A RNIP + V +N+ Sbjct: 184 KVQKSKKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLL 243 Query: 185 DILRCSKL----VLSKSAIEALEDRF 206 + L V + +A EAL+ + Sbjct: 244 QLAPGGHLGRFIVWTSAAFEALDQVY 269 >gi|160331635|ref|XP_001712524.1| rpl1 [Hemiselmis andersenii] gi|159765973|gb|ABW98199.1| rpl1 [Hemiselmis andersenii] Length = 312 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 76/229 (33%), Gaps = 49/229 (21%) Query: 3 ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEV 57 +++V + + + +++ E IF + I V S KR S S + Sbjct: 5 KVNVYSSEDKFLVDSVNLPE-IFLSPIRIDIFKFVFLNMSKNKRQSYSVNQSSGMNTSAI 63 Query: 58 AYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL- 110 ++ +++ KG+G R +V F GG+ F P H + K R A+ Sbjct: 64 SWGTGRAVARIPRVKGSGTNRSGQGAVGNFCRGGRMFSPTTIWRKWHHKIIKNQRRQAVL 123 Query: 111 ----RHALSDK--FCSNDI-------MVIDNLVSKECKTKYLVTRFRALD--------LS 149 L + I +VI++ V TK+ T + L L Sbjct: 124 TSVACSGLVSLVMARGHKISETPEIPLVIESCVESIICTKFGQTALKNLGAYSDIRDKLK 183 Query: 150 NALIIDGCQLDRN---------------FQLAARNIPNINLLPVQGINV 183 + G RN A RNIP I + +N+ Sbjct: 184 KKTLKAGKGKLRNRRRKKYLGPLIIFEKNARAFRNIPGIETCCIDYLNI 232 >gi|213403210|ref|XP_002172377.1| 60S ribosomal protein L2 [Schizosaccharomyces japonicus yFS275] gi|212000424|gb|EEB06084.1| 60S ribosomal protein L2 [Schizosaccharomyces japonicus yFS275] Length = 363 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 52/232 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V G +F + ++ V + KR + S + +E Sbjct: 6 PTVNVYTAQGAVSTDALALPFVFKAPIRPDVVRSVHTAVAKNKRQAYAVSEKAGHQTSAE 65 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A+ Sbjct: 66 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNQKRYAIA 125 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL--------- 148 A++ + + +V+ + V KTK V +A+ Sbjct: 126 SAVAASGVPSLLLARGHRVEEIAEVPLVLADEVESIKKTKEAVAVLKAVKAYRDVAKVAN 185 Query: 149 SNAL------------------IIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 S L ++ + D A RNIP + L+ V+ +N Sbjct: 186 SRKLRAGKGKMRNRRYVQRRGPLVVYNE-DAGITKAFRNIPGVELVNVRRLN 236 >gi|62897675|dbj|BAD96777.1| ribosomal protein L4 variant [Homo sapiens] Length = 427 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHANLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 114 LSDKFCSNDIM--------------VIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ +M V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMPKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A RNIP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245 Query: 192 L----VLSKSAIEALEDRF 206 + + +SA L++ + Sbjct: 246 VGRFCIWIESAFRKLDELY 264 >gi|125773997|ref|XP_001358257.1| GA18932 [Drosophila pseudoobscura pseudoobscura] gi|54637993|gb|EAL27395.1| GA18932 [Drosophila pseudoobscura pseudoobscura] Length = 401 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEAAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVV--YHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFSRLNDLF 267 >gi|125546040|gb|EAY92179.1| hypothetical protein OsI_13894 [Oryza sativa Indica Group] Length = 817 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 59/243 (24%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 + + ++ + S +R + S + +E TG ++ G G Sbjct: 28 PQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 87 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHAL------SDKFCSND-- 122 R + GG+ F P + ++R +A+ AL S Sbjct: 88 HRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRI 147 Query: 123 -------IMVIDNLVSKECKTKYLVTRFRALD---------------------------- 147 ++V D++ S E KT + + + Sbjct: 148 EGVPEFPLVVSDSIESIE-KTAQSIKVLKQIGAYADAEKAKDSVAIRAGKGKMRNRRYIN 206 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALE 203 LI+ G + + A RN+P +++ V+ +N+ D+ L V+ ++ A + L+ Sbjct: 207 RKGPLIVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLD 265 Query: 204 DRF 206 + + Sbjct: 266 EVY 268 >gi|170280411|gb|ACB12079.1| ribosomal protein L4 [Heliothis virescens] Length = 426 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 77/254 (30%), Gaps = 55/254 (21%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57 +SV E S+ +F + ++ V S R S SK +E Sbjct: 10 VSVYTEKSEAVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYSVSKEAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 TG ++ +G G R + GG+ F P + + R Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAAVAA 129 Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157 R + +K ++V D + + ++ R S+ L + Sbjct: 130 AVAASGVPALVQARGHIIEKVPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKS 189 Query: 158 Q-------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 Q D+ A RNIP + +L V +N+ + L Sbjct: 190 QRLRAGKGKMRNRRRVQRKGPLIIYHKDQGLTRAFRNIPGVEMLNVDKLNLLKLAPGGHL 249 Query: 193 ----VLSKSAIEAL 202 + ++SA + L Sbjct: 250 GRFCIWTQSAFDRL 263 >gi|289739703|gb|ADD18599.1| ribosomal protein L4 [Glossina morsitans morsitans] Length = 405 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + E ++ +F + ++ + + KR + S + +E Sbjct: 10 VSVYSEKNEQIKEKNICLPAVFKAPIRPDVVNDIHQLMRRNKRQPYAVSEQAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKINVNQRRYALVS 129 Query: 113 ALSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 A++ I+ V+ + V K KTK V R + D+ Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRMKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 LII D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLII--YFKDEGLRRAFRNIPGIETMCVDKMNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L + F Sbjct: 248 HVGRFVIWTESAFARLNELF 267 >gi|22203722|gb|AAM94273.1| ribosomal protein L4 [Chlamys farreri] Length = 206 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 10/123 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + GE GV +F + I++ V R + SK +E Sbjct: 7 ISVYDNKGEGTGVNVTLPSVFRAPIRPDIVSFVHSEMRKNSRQPYAVSKYAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + R AL A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRININQRRYALCSA 126 Query: 114 LSD 116 ++ Sbjct: 127 IAA 129 >gi|145592243|ref|YP_001154245.1| 50S ribosomal protein L4P [Pyrobaculum arsenaticum DSM 13514] gi|145284011|gb|ABP51593.1| LSU ribosomal protein L4P [Pyrobaculum arsenaticum DSM 13514] Length = 278 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 71/234 (30%), Gaps = 61/234 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG I F + ++ R + KG E G Sbjct: 23 KLKVYGPDGAYIAEIDAPPHFF-EPVRPDLIRRAYLSALSARFQ----PKGVYE--GAGK 75 Query: 63 KMYVQK---GTGRARH----SSK-----SVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLA 109 + + G G AR S RGG +A P +H + KK ++LA Sbjct: 76 EHSCESFGVGLGIARIPRYKGSLWPRGCFSPNTRGGRRAHPPRVEKKLHEEINKKEKNLA 135 Query: 110 LRHAL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALDL------- 148 +R A+ + ++ V+ K K K F AL L Sbjct: 136 IRSAIAATAYRTWVATRGHVIDKVQSLPVVVSGDAEKIAKAKEARKLFEALGLWPDVERA 195 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 ++++ D A RN P ++++P + +N Sbjct: 196 AEGTKIRAGKGKMRGRRYKEPKSVLVVVSAADAPLAAAVRNFPGVDVVPAEHLN 249 >gi|326427311|gb|EGD72881.1| Ras2 [Salpingoeca sp. ATCC 50818] Length = 372 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 58/260 (22%) Query: 3 ELSVR-NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEV 57 +++V G G +++ +F + ++ V + R + S Sbjct: 7 QVTVYGTSKGASVGQVAL-PAVFTAPIRTDVVHFVHTNMAKNSRQPYAVSERAGHQHSAA 65 Query: 58 AYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 ++ S++ G+G +R + G+ F P + K R A Sbjct: 66 SWGTGRAVSRIPRVAGSGTSRSGQGAFGNMCRKGRMFAPTKIWRHWHRRINKNQRRFATA 125 Query: 112 HALS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 AL+ K ++V + + S + TK V + L Sbjct: 126 SALAASALPSLVEARGHSIAKLQQVPLVVSNEVESMK-TTKAAVALLKTLGAYNDVDRCK 184 Query: 149 -SNALI-----------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 S +L + + + A RN+P + L PV+ ++V + Sbjct: 185 NSRSLRSGKGKWRNRRHTMRRGPLVCYKKNNGIVRAFRNLPGVELCPVESLSVLKLAPGG 244 Query: 191 KL----VLSKSAIEALEDRF 206 + + ++ A L F Sbjct: 245 HVGRFIIWTEGAFNHLNKLF 264 >gi|195143979|ref|XP_002012974.1| GL23641 [Drosophila persimilis] gi|194101917|gb|EDW23960.1| GL23641 [Drosophila persimilis] Length = 401 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEAAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVV--YHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFSRLNDLF 267 >gi|195037353|ref|XP_001990125.1| GH18408 [Drosophila grimshawi] gi|193894321|gb|EDV93187.1| GH18408 [Drosophila grimshawi] Length = 401 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEALKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQPYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + VID + V + + + + Sbjct: 130 AIAASGVPALVQSKGHVIDGISEFPLVVSDEVQKLQKTKQAVVFLRRMKVWADIQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + D + A RNIP I + V +N+ + + Sbjct: 190 QRFRAGRGTMRDRRRIARKGPLVVYHKDEGLRQAFRNIPGIETICVDKLNLLKLAPGGHV 249 Query: 193 ---VL-SKSAIEALEDRF 206 V+ ++SA L D F Sbjct: 250 GRFVIWTESAFSRLNDLF 267 >gi|126465914|ref|YP_001041023.1| 50S ribosomal protein L4P [Staphylothermus marinus F1] gi|126014737|gb|ABN70115.1| LSU ribosomal protein L4P [Staphylothermus marinus F1] Length = 271 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 93/261 (35%), Gaps = 70/261 (26%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TGSK 63 V + DGE I++ IF+L ++ ++ R + KGR +A T ++ Sbjct: 18 VFSSDGEKVEEITLPP-IFSLPVRKDLIRRAFL----SAFTSMLQPKGRDPLAGKRTTAR 72 Query: 64 MYVQKGTGRARHSSKSVSQF-----------RGGGKAFGPVPIIGVH-ALPKKVRSLALR 111 + G GR V + RGG AF P P +H + K+ ++ A+ Sbjct: 73 SW---GVGR---GLARVPRLPNSRAAFISFARGGHAAFPPRPDERIHERINKREKAYAVA 126 Query: 112 HALSDK------------FCSNDIMVI--DNLVSKECKTKYLVTRFRALDL--------- 148 A++ F + + V+ D++ K K + L L Sbjct: 127 SAIAATAKVDLVRGRGHVFQQDKLPVVLLDDVEDKISKARDAKELLIKLGLWSDIVRSYE 186 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 +++ D+ F A RN P +++ + + + Sbjct: 187 RIRIRAGKGKMRGRRYVEPRSILFVVTSYDKPFAKAVRNFPGVDVATPNNLGILHLAPGG 246 Query: 188 RCSKL-VLSKSAIEALEDRFK 207 +L V ++SAIE + +++ Sbjct: 247 VPGRLTVFTRSAIEDISRKYE 267 >gi|209730670|gb|ACI66204.1| 60S ribosomal protein L4-A [Salmo salar] gi|221222354|gb|ACM09838.1| 60S ribosomal protein L4-A [Salmo salar] Length = 210 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 24/171 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58 +S+ + GE G V +F + I+ V R G + + +E Sbjct: 8 ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150 +S +I +V+D+ V KTK V + L N Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKARN 178 >gi|193084206|gb|ACF09870.1| ribosomal protein L4 [uncultured marine group II euryarchaeote KM3-136-D10] Length = 292 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 76/260 (29%) Query: 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK---GRSEVAY-TGSKMYVQKGTGR 72 I + + F+ + ++ ++ +R ++ R+ VA S + KG G Sbjct: 36 IELPDC-FSADIRVQVVRDAVQSARANRRQPYGHNRHEGRRNPVAGMKHSVEWWGKGRGV 94 Query: 73 AR-------HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDI- 123 +R + RGG +A GP + KVR A A++ ++ + Sbjct: 95 SRIMRKTGQSTGAENPHTRGGRRAHGPKVEKDWTMKVNSKVRKQARNSAIAATINTDTVA 154 Query: 124 -------------MVIDNLVSK---------------ECKTKYLVTRFRALDL------- 148 ++ID T+ + L L Sbjct: 155 NRGHRFSDDVKFPVIIDGYSEDRDGKKEKYDVESIPLTYSTRKFIAMMEGLGLGADLNRA 214 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 + L++ G + AA N+ ++++ + ++ D+ Sbjct: 215 KNGRNIRAGKGKMRGRRRRTPKSILLVVGQR--DGLAKAASNVSGVDVVAAKDLSAEDLA 272 Query: 188 RCSKL----VLSKSAIEALE 203 + V +KSAIEALE Sbjct: 273 PGGDMGRLTVWTKSAIEALE 292 >gi|212723450|ref|NP_001132773.1| hypothetical protein LOC100194262 [Zea mays] gi|194695362|gb|ACF81765.1| unknown [Zea mays] Length = 386 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 86/260 (33%), Gaps = 58/260 (22%) Query: 4 LSVRNLDGED---KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55 +SV +++GE G + + +F + ++ V + R + + + Sbjct: 11 VSVLSVEGETAAVVGQVVL-PSVFTAPIRPDVVNFVHTNIAKNNRQAYGVSRRAGHQHSA 69 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G +R + GG+ F P + R A+ Sbjct: 70 ESWGTGRAVARIPRISGGGTSRAGQGAFGNMCRGGRMFAPTRIWRRWHRKVNVNQRRFAV 129 Query: 111 RHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS------- 149 AL+ + I +V+D+ V KT V + Sbjct: 130 ASALAASALPALVTARGHRIEKVPEVPLVLDDAVESVLKTAQAVKVLAKIGADADVEKVK 189 Query: 150 -NALIIDGCQLDRN------------------FQLAARNIPNINLLPVQGINVYDILRCS 190 + + G RN + A RNIP + L V+ +N+ + Sbjct: 190 DSKKVTTGRGKSRNRRYTTRRGPLVVYANANGLEKAFRNIPGVELANVERLNLLQLAPGG 249 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ +KSA E L+ + Sbjct: 250 HLGRFVIWTKSAFEKLDAIY 269 >gi|323508547|dbj|BAJ77167.1| cgd6_3190 [Cryptosporidium parvum] gi|323510201|dbj|BAJ77994.1| cgd6_3190 [Cryptosporidium parvum] Length = 392 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 83/263 (31%), Gaps = 65/263 (24%) Query: 4 LSVR--NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-SKSKG----RSE 56 +SV N + I + +F + ++ V S KR +K +E Sbjct: 8 VSVFPSNDSTKATSSIPL-PTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAE 66 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G +R + GG F P + + A+ Sbjct: 67 SWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVA 126 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNAL----- 152 ++ N++ +VI N + KT V F+ L + Sbjct: 127 AAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGLEEEMKRIES 186 Query: 153 ----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188 ++ + D A RNI ++ V+ +N +LR Sbjct: 187 SIAIRCGKGKMRNRRRVCAVGPLVVYAE-DNGIVKAMRNIKGVDTCSVERLN---LLRLA 242 Query: 189 ----CSKL-VLSKSAIEALEDRF 206 +L + +K AI+ L++ + Sbjct: 243 PGGTFGRLTIFTKGAIKRLQEIY 265 >gi|255568434|ref|XP_002525191.1| 60S ribosomal protein L4, putative [Ricinus communis] gi|223535488|gb|EEF37157.1| 60S ribosomal protein L4, putative [Ricinus communis] Length = 410 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 58/255 (22%) Query: 8 NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62 ++ + + + + + + I++ V S R + SK +E TG Sbjct: 22 DMATDAVTTVPLPDSM-KASLRPDIVSFVHAQMSKNSRQPYAVSKRAGHQTSAESWGTGR 80 Query: 63 ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD- 116 ++ G G R + GG+ F P + + AL A++ Sbjct: 81 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYALVSAIAAS 140 Query: 117 ------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD---------------- 147 + + +VI + KT + + + Sbjct: 141 AIPSLVMARGHKVESVPEMPLVISDSAESIEKTSTALKVLKEIGAYPDVEKAKDSHAIRP 200 Query: 148 ------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 LI+ G + A RNIP + + V+ +N+ + L Sbjct: 201 GKGKMRNRRYISRKGPLIVYGSEG-AKLVKAFRNIPGVEVANVERLNLLKLAPGGHLGRF 259 Query: 193 VL-SKSAIEALEDRF 206 V+ +KSA E L+ + Sbjct: 260 VIWTKSAFEKLDSIY 274 >gi|44968095|gb|AAS49583.1| ribosomal protein L4 [Gallus gallus] Length = 280 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 58/242 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 +F + ++ V R + S + +E TG ++ +G G Sbjct: 7 PAVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGT 66 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCS 120 R + GG+ F P + + A+ +S Sbjct: 67 HRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICSALAASALPALVMSKGHRI 126 Query: 121 NDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL--------------------- 152 +I +V+++ V KTK L+ + +A + + Sbjct: 127 EEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 186 Query: 153 ----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALED 204 II D A RNIP I LL V +N+ + + + ++SA L+D Sbjct: 187 RGPCII--YNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGGHVGRFCIWTESAFRKLDD 244 Query: 205 RF 206 + Sbjct: 245 LY 246 >gi|325183777|emb|CCA18236.1| hypothetical protein LOC100194262 [Albugo laibachii Nc14] Length = 388 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 56/259 (21%) Query: 4 LSVRNLDGE--DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RSE 56 +SV ++D + V +F + ++ V + R + S+G +E Sbjct: 11 VSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVKFVHTNMAKNNRQPYAVSRGAGHQHSAE 70 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G R + G+ F P + R A+ Sbjct: 71 SWGTGRAVSRIPRIQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVA 130 Query: 112 HALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALDLS-------- 149 AL+ + + V+D++V KT + V + Sbjct: 131 SALAASALPSLVTARGHRIEKLAEIPCVLDDMVESLQKTSHAVKLLSKIGADEDIEKVKD 190 Query: 150 NALIIDGCQLDRN------------------FQLAARNIPNINLLPVQGINVYDILRCSK 191 + I G RN + A RNIP + L V+ +N+ + Sbjct: 191 SKKIRTGRGKSRNRRYVMRRGPLIVYASPNGLEKAFRNIPGVELAHVERLNLLQLAPGGH 250 Query: 192 L---VL-SKSAIEALEDRF 206 L V+ +K+A E L+ + Sbjct: 251 LGRFVIWTKTAFEKLDALY 269 >gi|70952565|ref|XP_745442.1| 60S ribosomal subunit protein L4/L1 [Plasmodium chabaudi chabaudi] gi|56525766|emb|CAH79389.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium chabaudi chabaudi] Length = 411 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 62/262 (23%) Query: 1 MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52 M + +V ++G+ G + + +F + ++ + S R + K Sbjct: 1 MATIRPLANVYGINGKKVVGEVEI-PVVFQTPIRHDLIEYIFSNMSKNIRHPYA-VKLGA 58 Query: 53 ---GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKK 104 +E TG ++ G G R + GG F P + K Sbjct: 59 GYETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLK 118 Query: 105 VRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS- 149 + A+ +++ + I +V N + KTK + +L L Sbjct: 119 EKRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTKDALKFLISLGLRD 178 Query: 150 --NALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 N LI + D + A RNIP ++L V +N+ Sbjct: 179 EVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLL 238 Query: 185 DILRCSKL----VLSKSAIEAL 202 + + + S+ A + L Sbjct: 239 KLAPGGSIGRLCIWSEDAFKKL 260 >gi|167518295|ref|XP_001743488.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778587|gb|EDQ92202.1| predicted protein [Monosiga brevicollis MX1] Length = 364 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 62/259 (23%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG------R 54 +++V + DG KG ++ +F + ++ V S +R + K Sbjct: 5 PQVTVFSAEDGSAKGSTTM-PAVFTAPIRTDVVHFVHTNMSKNRRQPYA-VKDSAGHEHS 62 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G +R + G+ F P + K R A Sbjct: 63 AESWGTGRAVSRIPRVSGGGTSRSGQGAFGNMCRKGRMFAPTKVWRHWNRRINKNQRRYA 122 Query: 110 LRHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 AL+ + I +VI++ V KT V +A+ Sbjct: 123 TASALAASALPALVEARGHRIGDLPQVPLVIESSVETFQKTAKAVELLKAVGAFEDVERS 182 Query: 148 ------------LSNA--------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 N L++ G + A RN+P ++ V +N+ + Sbjct: 183 RESRKLRPGHGKWRNRRHIQRRGPLVVYG--KNTGVVEAFRNLPGVDTCSVDALNLLQLA 240 Query: 188 RCSKL----VLSKSAIEAL 202 + V ++ A L Sbjct: 241 PGGHVGRFIVWTEDAFNKL 259 >gi|194746355|ref|XP_001955646.1| GF18868 [Drosophila ananassae] gi|190628683|gb|EDV44207.1| GF18868 [Drosophila ananassae] Length = 401 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 82/260 (31%), Gaps = 59/260 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E S+ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEAAKDKSICLPAVFKAPIRPDVVNDVHQLLRRNNRQPYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 A++ I+ V+ + V K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ D + A RNIP I + V +N+ + Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVV--YHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGG 247 Query: 191 KL---VL-SKSAIEALEDRF 206 + V+ ++SA L D F Sbjct: 248 HVGRFVIWTESAFSRLNDLF 267 >gi|70953649|ref|XP_745912.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526380|emb|CAH77375.1| hypothetical protein PC103611.00.0 [Plasmodium chabaudi chabaudi] Length = 127 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%) Query: 32 ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91 +L ++++ +K RS + ++ K+ VQKGTG+AR + S + + G FG Sbjct: 41 LLIYIIKYYYLNSIYRYKNTKNRSLINFSKKKIRVQKGTGKARLKTLSSTVCKQGACTFG 100 Query: 92 PVPIIGVHALPKKVRSLALRHALSDK 117 P + K + L + L +K Sbjct: 101 PFYKSKIIKYNKFIYKLIFIYLLINK 126 >gi|188572407|gb|ACD65110.1| putative 60S ribosomal protein RPL4 [Novocrania anomala] Length = 179 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 10/123 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 ++V + E G +F + ++ V R + + +E Sbjct: 7 ITVYSEKAEPAGTTITLPAVFRAPIRPDVVNFVHTEIRKNSRQAYCVSKFAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKTWRRWHRKVNVNQKRYAICSA 126 Query: 114 LSD 116 ++ Sbjct: 127 IAA 129 >gi|242068965|ref|XP_002449759.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor] gi|241935602|gb|EES08747.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor] Length = 64 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 36/96 (37%) Query: 19 VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78 + +D+F + ++ I+ V G +K E Sbjct: 3 LDDDVFDVPIRKDIVHWV----------GTHLTKAIGE---------------------- 30 Query: 79 SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114 F GG GP P I L KKVR L L+ AL Sbjct: 31 ----FHGGATIHGPKPRIHAIKLQKKVRRLGLKIAL 62 >gi|302761726|ref|XP_002964285.1| hypothetical protein SELMODRAFT_166994 [Selaginella moellendorffii] gi|300168014|gb|EFJ34618.1| hypothetical protein SELMODRAFT_166994 [Selaginella moellendorffii] Length = 401 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 78/251 (31%), Gaps = 59/251 (23%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64 GV + ++F + ++ +V + KR + SK +E TG ++ Sbjct: 21 KAGVTAALAEVFKSPIRPDVVRQVHTGIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRI 80 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---------HA 113 G G R + GG+ F P L ++ A+ Sbjct: 81 PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTYRRWHRKLNINLKRYAVVSALAASAIPSL 140 Query: 114 L------SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD-------------------- 147 L +K ++V D L S E KT V + L Sbjct: 141 LLARGHRIEKVPEVPLVVSDALESIE-KTSVAVKALKTLGAYEDVEKVKKSRNIRCGKGK 199 Query: 148 --------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLS 195 LII G + A NIP I + V +N+ + L + + Sbjct: 200 MRNRRYVSRRGPLIIYGTEG-AKLVKAFTNIPGIEVCNVNRLNLLQLAPGGHLGRFIIWT 258 Query: 196 KSAIEALEDRF 206 K A E L++ F Sbjct: 259 KCAFEKLDEIF 269 >gi|302766759|ref|XP_002966800.1| hypothetical protein SELMODRAFT_144235 [Selaginella moellendorffii] gi|300166220|gb|EFJ32827.1| hypothetical protein SELMODRAFT_144235 [Selaginella moellendorffii] Length = 401 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 78/251 (31%), Gaps = 59/251 (23%) Query: 13 DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64 GV + ++F + ++ +V + KR + SK +E TG ++ Sbjct: 21 KAGVTAALAEVFKSPIRPDVVRQVHTGIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRI 80 Query: 65 YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---------HA 113 G G R + GG+ F P L ++ A+ Sbjct: 81 PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTYRRWHRKLNINLKRYAVVSALAASAIPSL 140 Query: 114 L------SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD-------------------- 147 L +K ++V D L S E KT V + L Sbjct: 141 LLARGHRIEKVPEVPLVVSDALESIE-KTSVAVKALKTLGAYEDVEKVKKSRNIRCGKGK 199 Query: 148 --------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLS 195 LII G + A NIP I + V +N+ + L + + Sbjct: 200 MRNRRYVSRRGPLIIYGTEG-AKLVKAFTNIPGIEVCNVNRLNLLQLAPGGHLGRFIIWT 258 Query: 196 KSAIEALEDRF 206 K A E L++ F Sbjct: 259 KCAFEKLDEIF 269 >gi|258571201|ref|XP_002544404.1| 60S ribosomal protein L4-A [Uncinocarpus reesii 1704] gi|237904674|gb|EEP79075.1| 60S ribosomal protein L4-A [Uncinocarpus reesii 1704] Length = 372 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 56/237 (23%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +F + I+ V + +R + S + +E Sbjct: 5 PTVTIATADGKPSGATHPLPTVFTAPIRPDIVQSVHTGIAKNRRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINVGQKRFATA 124 Query: 112 ---------HALSDK-FCSNDI----MVIDNLVSKECKTKYLV------------TRFRA 145 L + +I +V+D+ + Sbjct: 125 SALAASSVPSLLFARGHRVANIPEVPLVVDSKTFENGAIAKTKAAIALLQALGAGAELVK 184 Query: 146 LDLSNA-------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182 + S L++ ++D + A RNIP + V +N Sbjct: 185 VQKSRKIRAGKGKMRGRRYRQRRGPLVVYNPEVDGKELVKAFRNIPGVETCSVFALN 241 >gi|156937756|ref|YP_001435552.1| 50S ribosomal protein L4P [Ignicoccus hospitalis KIN4/I] gi|156566740|gb|ABU82145.1| LSU ribosomal protein L4P [Ignicoccus hospitalis KIN4/I] Length = 271 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 64/257 (24%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRK-----RIGCSKSKGRSEVAYT 60 V +L+G I + +F+L ++ ++ R + R + + +E Sbjct: 21 VWDLNGNPVEEIELPP-VFSLPVRKDLIRRAFLSAFTARLQPKGRDPMAGKRTTAESLGP 79 Query: 61 GS---KMYVQKGTGRAR-HSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVR--------- 106 G ++ KGT RA +S GG AF P P +H + KK R Sbjct: 80 GHGLARVPRIKGTSRAAFVNSAR-----GGHLAFPPRPDKKLHEEINKKERLIAIASALA 134 Query: 107 -------SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL----------- 148 A HA+S ++V+D++ + E K K L F L + Sbjct: 135 ATSRRELVEARGHAISS-VKEVPLIVVDDIENIE-KAKDLREAFVKLGVIDDVERASEWR 192 Query: 149 -------------SNAL--IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 + +I + + AA P +++ V ++V + Sbjct: 193 QRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLLSVKHLAPGGVPG 252 Query: 191 KL-VLSKSAIEALEDRF 206 +L ++SK A+E + R Sbjct: 253 RLTIISKKALEEIGKRL 269 >gi|82705099|ref|XP_726827.1| ribosomal protein L4/L1 [Plasmodium yoelii yoelii str. 17XNL] gi|23482400|gb|EAA18392.1| ribosomal protein L4/L1 family, putative [Plasmodium yoelii yoelii] Length = 411 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 75/244 (30%), Gaps = 61/244 (25%) Query: 1 MIELS----VRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52 M + V ++ G+ G + + +F + ++ + S R + K Sbjct: 1 MATIKPLANVYSISGKKVVGEVEI-PVVFQTPIRNDLIEYIFSNMSKNTRHPYA-VKLGA 58 Query: 53 ---GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKK 104 +E TG ++ G G R + GG F P + K Sbjct: 59 GYETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLK 118 Query: 105 VRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS- 149 + A+ +++ + I +V N + KTK + +L L Sbjct: 119 EKRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESLQKTKDALXFLISLGLRD 178 Query: 150 --NALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 N LI + D + A RNIP ++L V+ + Sbjct: 179 EVNRLIKSKKIRAGKGKMRNRKYKISNGPLIIYSKDSGIKKAFRNIPGVDLCNVEKL--- 235 Query: 185 DILR 188 +L+ Sbjct: 236 SLLK 239 >gi|221119707|ref|XP_002157151.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 375 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 83/256 (32%), Gaps = 61/256 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58 ++V + GE I + +F + ++ V S R + ++ + Sbjct: 8 VTVLSDQGEKLKQIPL-PAVFKAPIRPDVVNFVHSNMSKNSRQAFSVHKHAGAQTSATSW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ +G G R + GG+ F P + + R A+ Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRHVNQNQRRYAVCSA 126 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL--------SNA 151 ++ ++ +V N + KTK V + ++ + Sbjct: 127 LAATALPALVMARGHKIENLTEVPVVCSNNIENLTKTKAAVQFLKKINAYEDVQKCQDSK 186 Query: 152 LI------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188 I + + D + A RN+P ++L+ V +N +L+ Sbjct: 187 KIRAGKGKMRNRRYTMRRGPLVVFKEDHGIKQAFRNLPGVDLIQVDRLN---LLKLCPGG 243 Query: 189 --CSKLVLSKSAIEAL 202 ++ S+SA E L Sbjct: 244 HLGRFVIWSESAFERL 259 >gi|74004017|ref|XP_859663.1| PREDICTED: similar to ribosomal protein L4 isoform 4 [Canis familiaris] Length = 411 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 61/255 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TG 61 +SV + GE G +F + I+ V R + SE+A T Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV----SELAGHQTS 63 Query: 62 SKMYVQKGTGR--ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR------ 111 ++ + GTGR AR + GG+ F P + + A+ Sbjct: 64 AESW---GTGRAVARIPRGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAAS 120 Query: 112 ----HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL-------- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 121 ALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRA 180 Query: 153 -----------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 II D A RNIP I LL V +N+ + + Sbjct: 181 GKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238 Query: 193 -VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 239 CIWTESAFRKLDDLY 253 >gi|73997307|ref|XP_852986.1| PREDICTED: similar to ribosomal protein L4 [Canis familiaris] Length = 411 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 61/255 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TG 61 +SV + GE G +F + I+ V R + SE+A T Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV----SELAGHQTS 63 Query: 62 SKMYVQKGTGR--ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR------ 111 ++ + GTGR AR + GG+ F P + + A+ Sbjct: 64 AESW---GTGRAVARIPRGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAAS 120 Query: 112 ----HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL-------- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 121 ALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRLRA 180 Query: 153 -----------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 II D A RNIP I LL V +N+ + + Sbjct: 181 GKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238 Query: 193 -VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 239 CIWTESAFRKLDDLY 253 >gi|145628332|ref|ZP_01784133.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145640872|ref|ZP_01796454.1| 50S ribosomal protein L3 [Haemophilus influenzae R3021] gi|144980107|gb|EDJ89766.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21] gi|145274386|gb|EDK14250.1| 50S ribosomal protein L3 [Haemophilus influenzae 22.4-21] Length = 49 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG 53 +EL V + ++VSE F + + ++ +V+ + R G K Sbjct: 1 MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKN 47 >gi|328866159|gb|EGG14545.1| 60S ribosomal protein L4 [Dictyostelium fasciculatum] Length = 369 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 79/260 (30%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58 ++V N + + + + + ++ V + R + + +E Sbjct: 6 VNVFNGENKTAAKVKF-PAVLGTPIRPDLVNFVHTNVNKNHRQAYGVYKYAGEQTSAESW 64 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ G+G R + GG+ FGP + + A+ A Sbjct: 65 GTGRAVARIPRVGGSGTHRSGQGAFGNMCRGGRMFGPNKVWRKWNRRVNVNQKRYAVCSA 124 Query: 114 LSD---------------KFCSNDIMVIDNLVSKECKTKYLVTRFRALD----------- 147 L+ + +++ + +++ KT + ++ Sbjct: 125 LAASAIPALVMARGHRVNQISEVPLVIANEVLANLTKTSAATALLKKINAYADVERVIAS 184 Query: 148 -----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ A RNIP +++ V +N+ + Sbjct: 185 KSVRAGQGKLRNRRFQSRRGPLLVLAG--PSKCVRAFRNIPGVDIAFVSSLNILRLAPGG 242 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ S+ A E L+ F Sbjct: 243 HLGRFVIWSQDAFEQLDKIF 262 >gi|126460190|ref|YP_001056468.1| 50S ribosomal protein L4P [Pyrobaculum calidifontis JCM 11548] gi|126249911|gb|ABO09002.1| LSU ribosomal protein L4P [Pyrobaculum calidifontis JCM 11548] Length = 285 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 61/233 (26%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63 L V +++G+ I + F + ++ R + KG E G + Sbjct: 31 LKVYDVNGQYMADIE-TPIHFYEPVRPDLIRRAYLSALSARFQ----PKGVYE--GAGKE 83 Query: 64 MYVQK---GTGRAR------HSSKS---VSQFRGGGKAFGPVPIIGVH-ALPKKVRSLAL 110 + G G AR H RGG +A P P +H + K ++LA+ Sbjct: 84 HSCESFGVGLGIARIPRYKGHLWPRGCFAPNTRGGRRAHPPRPEKKLHEEINWKEKNLAI 143 Query: 111 RHAL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALDL-------- 148 R A+ S ++ V+ K K K F L L Sbjct: 144 RSAIAATAYKSWVAARGHMVEKVPSLPLVVSGDAEKIAKAKEAKKLFEVLGLWPDVERAA 203 Query: 149 -------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 ++++ +LD A RN P ++++PV +N Sbjct: 204 EGVKIRAGKGKMRGRRYKEPKSVLVVVSELDVPLIGAVRNFPGVDVVPVSHLN 256 >gi|297722605|ref|NP_001173666.1| Os03g0796501 [Oryza sativa Japonica Group] gi|31126753|gb|AAP44673.1| putative 60S ribosomal protein L1 [Oryza sativa Japonica Group] gi|50400025|gb|AAT76413.1| putative 60S ribosomal protein L1 [Oryza sativa Japonica Group] gi|222625961|gb|EEE60093.1| hypothetical protein OsJ_12950 [Oryza sativa Japonica Group] gi|255674964|dbj|BAH92394.1| Os03g0796501 [Oryza sativa Japonica Group] Length = 404 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 57/242 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 + + ++ + S +R + S + +E TG ++ G G Sbjct: 28 PQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 87 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHAL------SDKFCSND-- 122 R + GG+ F P + ++R +A+ AL S Sbjct: 88 HRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRI 147 Query: 123 -------IMVIDNLVS------------------KECKTKYLVTRF---------RALDL 148 ++V D++ S KTK V R ++ Sbjct: 148 EGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINR 207 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALED 204 LI+ G + + A RN+P +++ V+ +N+ D+ L V+ ++ A + L++ Sbjct: 208 KGPLIVYGTEGSK-VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDE 266 Query: 205 RF 206 + Sbjct: 267 VY 268 >gi|116198121|ref|XP_001224872.1| hypothetical protein CHGG_07216 [Chaetomium globosum CBS 148.51] gi|88178495|gb|EAQ85963.1| hypothetical protein CHGG_07216 [Chaetomium globosum CBS 148.51] Length = 365 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 10/117 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 ++V DG+ G V +F+ + I+ V + KR S S + +E Sbjct: 5 PTVTVIGADGKATGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL 108 TG ++ G G R + G+ F P + + + Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRF 121 >gi|237862634|gb|ACR24942.1| ribosomal protein L4 [Lepidochitona cinerea] Length = 157 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 12/124 (9%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV GE G +++ +F + I+ V R + S + +E Sbjct: 7 ISVFTEKGESSGTNVTL-PAVFRAPIRPDIVNFVHFQMKMNGRQPYAVSEKAGHQTSAES 65 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R+ A+ Sbjct: 66 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRININQRTYAMCS 125 Query: 113 ALSD 116 A++ Sbjct: 126 AIAA 129 >gi|166952269|gb|ABZ04217.1| ribosomal protein rpl4 [Lineus viridis] Length = 204 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 24/168 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V + E G +F + I+ V R + S + +E Sbjct: 7 ITVYSDKNETTGTNITLPAVFRAPIRPDIVNFVHFEMLKNTRQPYAVSVQAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + R A+ A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQRRYAMCSA 126 Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD 147 ++ + I +V+ + V + KTK V+ + Sbjct: 127 IAATGIPALVMSKGHRIEETPEIPLVVSDKVEEIKKTKEAVSFLKKFK 174 >gi|14716980|emb|CAC44155.1| putative ribosomal protein L4B protein [Oncorhynchus mykiss] Length = 141 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 14/123 (11%) Query: 10 DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYTGS-- 62 G++ G+ +F + I+ V R G + + +E TG Sbjct: 6 SGKNVGM----PAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESWGTGRAV 61 Query: 63 -KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFC 119 ++ +G G R + GG+ F P + + A+ AL+ + Sbjct: 62 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHPRINTTQKRYAICSALAARPA 121 Query: 120 SND 122 + Sbjct: 122 RSR 124 >gi|226467133|emb|CAX76047.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 192 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 10/123 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD 116 ++ Sbjct: 128 IAA 130 >gi|68068601|ref|XP_676211.1| 60S ribosomal subunit protein L4/L1 [Plasmodium berghei strain ANKA] gi|56495800|emb|CAH97802.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium berghei] Length = 411 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 82/261 (31%), Gaps = 60/261 (22%) Query: 1 MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52 M + +V +++G+ G + + +F + ++ + S R + Sbjct: 1 MATIRPLANVYSINGKKVVGEVEI-PVVFQTPIRNDLIEYIFTNISKNTRHPYAVKLGAG 59 Query: 53 --GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105 +E TG ++ G G R + GG F P + K Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKVNLKE 119 Query: 106 RSLALRH----------ALSDKFCSNDIMVIDNLVSKEC----KTKYLVTRFRALDLS-- 149 + A+ L+ +++ + + S + KTK + +L L Sbjct: 120 KRYAVCSSIAASGISSLVLARGHRISNLKEVPLVASNDIESIQKTKDALKFLISLGLRDE 179 Query: 150 -NALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 N LI + D + A RNIP ++L V +N+ Sbjct: 180 VNRLIKSKKIRAGKGKMRNRKYKISNGPLIIYNKDSGIKKAFRNIPGVDLCNVTKLNLLK 239 Query: 186 ILRCSKL----VLSKSAIEAL 202 + + + S+ A + L Sbjct: 240 LAPGGSIGRLCIWSEDAFKKL 260 >gi|66817212|ref|XP_642484.1| 60S ribosomal protein L4 [Dictyostelium discoideum AX4] gi|74856887|sp|Q54Z69|RL4_DICDI RecName: Full=60S ribosomal protein L4 gi|60470596|gb|EAL68575.1| 60S ribosomal protein L4 [Dictyostelium discoideum AX4] Length = 369 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 60/256 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58 + V + + G + + + + ++ V + R + + +E Sbjct: 7 VQVFDAQNKVVGKVKLPN-VLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 TG ++ G+G R + GG+ +GP + + A+ Sbjct: 66 GTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSA 125 Query: 113 -------ALSDK-------FCSNDIMVIDNLVSKECKTKYLVTRFRALD----------- 147 AL +++ + V KTK V + ++ Sbjct: 126 LAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDS 185 Query: 148 -----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 L++ + A RNIP + + V +N+ + Sbjct: 186 KHIRAGAGKARNRRYKVRKGPLVVVSGKT--TVSQALRNIPGVEVANVSRLNLLKLAPGG 243 Query: 191 KL----VLSKSAIEAL 202 L + +KSA E L Sbjct: 244 HLGRFIIWTKSAFEQL 259 >gi|312285778|gb|ADQ64579.1| hypothetical protein [Bactrocera oleae] Length = 244 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 54/236 (22%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + E ++ +F + I+ V + R + S + +E Sbjct: 10 VSVYSDKNEQLKDKNICLPAVFKAPIRPDIVNEVHQLVRRNNRQPYAVSEQAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--------------- 153 A++ + +ID + V + + + + Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDDVQKLQKTKQAVVFLRRTKIWADIQKVYKS 189 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 + D + A RNIP I + V +N +L+ Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLIVYYKDEGLRRAFRNIPGIETMNVDKMN---LLK 242 >gi|303390282|ref|XP_003073372.1| 60S ribosomal protein L4 [Encephalitozoon intestinalis ATCC 50506] gi|303302518|gb|ADM12012.1| 60S ribosomal protein L4 [Encephalitozoon intestinalis ATCC 50506] Length = 335 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 81/244 (33%), Gaps = 63/244 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RSEVAYTGS---KMYVQKGTGR 72 ++F+ +Q ++ + + R + SK +E TG ++ KG G Sbjct: 22 PEVFSTPIRQDLVLKTYSIYRMKTRQPYAVSKYAGMQHSAESWGTGRAIARVPRVKGGGT 81 Query: 73 ARHSSKS-VSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH------------ALSDKF 118 R + + R G A + + + +A A + Sbjct: 82 RRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQTSLVEARGHRV 141 Query: 119 CSNDI--MVIDNLVSKECKTKYLVTRFRALDLSNAL------------------------ 152 + + +++ + +SK KTK + + L++ L Sbjct: 142 SNVKMLPIIVSDDISKAKKTKDALQILKDLNMKEELKRIEKSRGVRCGKGKMRNRRYTQR 201 Query: 153 ---IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC------SKLVL-SKSAIEAL 202 +I + L RNI ++ + + + D+L +L++ ++SA E L Sbjct: 202 KGILIVHGESSE--LLGFRNIRGVDQMSIDSL---DLLELAPGGLPGRLIIWTESAFEKL 256 Query: 203 EDRF 206 + F Sbjct: 257 DKIF 260 >gi|70909603|emb|CAJ17227.1| ribosomal protein L4e [Biphyllus lunatus] Length = 404 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 65/259 (25%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + + +++ +F + ++ V + S R S S + +E Sbjct: 10 VSVYDEKSKQVTESNIALPAVFKAPIRPDVVNFVHQQISMNHRQPYSVSDKAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG + +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVAHIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNINQRRYALAS 129 Query: 113 A----------LSDKFCSNDI----MVIDNLVSKECKTKYLVTRF--------------- 143 A LS + I +V+ + + + KTK VT Sbjct: 130 AVAASGVPALVLSKGHVIDQIPELPLVVSDKIQELKKTKEAVTFLRRVKAWGDIQKVYKS 189 Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188 R + L++ D + A RNIP I+L+ V + +L+ Sbjct: 190 QRFRAGKGKMRNRRRIQRKGPLVV--YSKDDGLRRAFRNIPGIDLISVDKL---SLLKLA 244 Query: 189 -----CSKLVLSKSAIEAL 202 ++ ++SA + L Sbjct: 245 PGGHVGRFVIWTESAFQKL 263 >gi|154421449|ref|XP_001583738.1| ribosomal protein [Trichomonas vaginalis G3] gi|121917981|gb|EAY22752.1| ribosomal protein, putative [Trichomonas vaginalis G3] Length = 370 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 55/228 (24%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVA 58 ++V +G+ I + +F + ++ V + + + K S ++ Sbjct: 5 TVNVLTQEGQKASTIEL-PKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63 Query: 59 YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 + +++ G+G R+ + + F GG F P +P + R Sbjct: 64 WGTGRAKARVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123 Query: 109 ------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A H L + I+V+D + + +T+ V + + + Sbjct: 124 AIAATAVVPLVQARGHILGE-VKEVPIVVVDAVQEIK-RTRDAVELLKKVGVYGDVQRVL 181 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + + D+ A RNIP + + V Sbjct: 182 DGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISV 229 >gi|322693709|gb|EFY85560.1| 60S ribosomal protein L4, putative [Metarhizium acridum CQMa 102] Length = 376 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 85/290 (29%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +S+ DG G +F + I+ RV + KR + S + +E Sbjct: 5 PTVSIIGKDGAPTGATHPVPAVFTSPIRPDIVQRVHTGMAKNKRQPYAVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV------ 105 TG ++ G G R + G+ F P + + Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKYVVLP 124 Query: 106 -------------------RSLALRHALSDKFCSNDI--------------MVIDNLVSK 132 R A AL+ + + +V+D+ + Sbjct: 125 LHTQSLYFSSQTNKTTLLPRRYATCSALAASAAAPLLMARGHEIMTVAEVPLVVDSALFD 184 Query: 133 EC---KTKYLVTRFRALDL---------SNAL-------------------IIDGCQLD- 160 +T + +A+ S L ++ ++D Sbjct: 185 AAAVSRTASALALLKAVGAGPDVEKAKNSKKLRAGKGKLRGRRHRQRRGPLVVYNPEVDG 244 Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 + A RNIP + PV +N+ + L V + SA +AL+D + Sbjct: 245 KELVKAFRNIPGVETSPVSALNLLQLAPGGHLGRFIVWTSSAFKALDDIY 294 >gi|291397386|ref|XP_002715120.1| PREDICTED: ribosomal protein L4-like, partial [Oryctolagus cuniculus] Length = 290 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 80/254 (31%), Gaps = 56/254 (22%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 LSV + GE G +++ +F Q I+ V R + S + +E Sbjct: 8 LSVYSEKGESSGKNVTL-PAMFKAPIQPDIVNFVHTNVRKNNRQPYAVSELAGHQTSAES 66 Query: 58 AYTGSK---MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI--IGVHALPKKVRSLALRH 112 TG + +G G R + GG+ F P + + A+ Sbjct: 67 WGTGRAVAGIPRVRGGGTHRSGQGAFRNMCRGGRMFAPTKTWCHWHRRVNTTQKWYAICS 126 Query: 113 ALSDKFCSNDIM--------------VIDNLVSKECKTKY---LVTRFRALDLSNALI-- 153 AL+ +M V+++ V KTK L+ + +A + + Sbjct: 127 ALAALALPALVMSKGHGIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186 Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 D A RNIP I LL V +N+ + + Sbjct: 187 QRMRAGKGKMRNRRRTQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLAPGGHV 246 Query: 193 ----VLSKSAIEAL 202 + ++SA L Sbjct: 247 GRFCIWTESAFRKL 260 >gi|229579207|ref|YP_002837605.1| 50S ribosomal protein L4P [Sulfolobus islandicus Y.G.57.14] gi|229582041|ref|YP_002840440.1| 50S ribosomal protein L4P [Sulfolobus islandicus Y.N.15.51] gi|259491574|sp|C3NHA8|RL4_SULIN RecName: Full=50S ribosomal protein L4P gi|259491575|sp|C3NEE4|RL4_SULIY RecName: Full=50S ribosomal protein L4P gi|228009921|gb|ACP45683.1| ribosomal protein L4/L1e [Sulfolobus islandicus Y.G.57.14] gi|228012757|gb|ACP48518.1| ribosomal protein L4/L1e [Sulfolobus islandicus Y.N.15.51] Length = 267 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 87/261 (33%), Gaps = 71/261 (27%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + + DG + + IF+ ++ I+ RV + KGR +A Sbjct: 12 ILDKDGNKVKEVEL-PFIFSFPVRKDIIRRVFLAEFTHSLQ----PKGRDPMAGKRTSAE 66 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 +++ K +G A GG F P V + K + LA+ Sbjct: 67 SFGINLGMARVPRVKNSGEAAL----APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVIS 122 Query: 113 ALSDKFCSNDIMV-------IDNLVSKECKTKYLVTRFRALDLSNAL------------- 152 ALS ++ + V D++ T +V+ A ++ L Sbjct: 123 ALS--ATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVK 180 Query: 153 -----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI--- 186 +I + AARNI ++++ + ++V + Sbjct: 181 ERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG 240 Query: 187 LRCSKL-VLSKSAIEALEDRF 206 +L + ++++I+ L++R Sbjct: 241 AHSGRLTIYTETSIKILDERL 261 >gi|313221401|emb|CBY32154.1| unnamed protein product [Oikopleura dioica] gi|313240719|emb|CBY33037.1| unnamed protein product [Oikopleura dioica] Length = 231 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 24/168 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV + DG+ +F + ++ V S R + + +E Sbjct: 8 VSVYSRDGKPVSEFVNLPAVFKAPIRTDVVKFVHTNISKNARQPYSVSRVAGKQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G +R + + GG+ F P + R A A Sbjct: 68 GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNITQRRFATVSA 127 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRALD 147 ++ + V++N V KTK V +++ Sbjct: 128 IAATGIPALAMAKGHFISNVPEFPLVLENSVESLKKTKEAVKTLKSVG 175 >gi|326488173|dbj|BAJ89925.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 404 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 79/245 (32%), Gaps = 63/245 (25%) Query: 21 EDIFALKPQQGIL---ARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKG 69 + + ++ R++ R + S + +E TG ++ G Sbjct: 28 PHVMTAPIRPDVITFVHRLVSC---NSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVGG 84 Query: 70 TGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDK-------FCS 120 G R + GG+ F P + ++R +A+ AL+ Sbjct: 85 GGTHRAGQGAFGNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASALAATAVPAIVTARG 144 Query: 121 NDI-------MVIDNLVSKECKTKYLVTRFRALD-------------------------- 147 + I +V+ + KT + L Sbjct: 145 HRIEGVPEFPLVVSDSAEGIEKTSQAIKVLEQLGAFADAEKAKESVGIRPGKGKMRNRRY 204 Query: 148 --LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEA 201 LI+ G + + A RN+P +++ V+ +N+ D+ L V+ ++SA + Sbjct: 205 INRKGPLIVYGTEGSK-IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKK 263 Query: 202 LEDRF 206 L++ + Sbjct: 264 LDEVY 268 >gi|226471654|emb|CAX70908.1| putative ribosomal protein L4 [Schistosoma japonicum] Length = 232 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 10/123 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVA 58 ++V ++G G +F + +L V R + +K +E Sbjct: 8 VNVYGVNGTSTGATIKMPAVFTTPFRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG + P + + R A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127 Query: 114 LSD 116 ++ Sbjct: 128 IAA 130 >gi|76642853|ref|XP_871569.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Bos taurus] gi|297486440|ref|XP_002695663.1| PREDICTED: 60S ribosomal protein L4-like [Bos taurus] gi|296476944|gb|DAA19059.1| 60S ribosomal protein L4-like [Bos taurus] Length = 422 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 82/259 (31%), Gaps = 58/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSKKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI--IGVHALPKKVRSLALRHA 113 TG ++ +G + GG+ F P H + + A+ Sbjct: 68 GTGRAVARIPRVRGGRTHHSGQGAFGNMCRGGRMFAPTKTWQRWHHRVNTTQKRYAICSE 127 Query: 114 LSDKF-------CSNDI-------MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 L+ + I +V+++ V K+K L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKSKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 II D A R+IP I LL V +N+ + Sbjct: 188 RMRAGKGKMRNRHRIQRRGPCII--YNEDNGIIKAFRSIPGITLLNVSKLNILKLAPGGY 245 Query: 192 L----VLSKSAIEALEDRF 206 + + ++SA L++ + Sbjct: 246 VGRFCIWTESAFRKLDELY 264 >gi|70606411|ref|YP_255281.1| 50S ribosomal protein L4P [Sulfolobus acidocaldarius DSM 639] gi|76363365|sp|Q4JB41|RL4_SULAC RecName: Full=50S ribosomal protein L4P gi|68567059|gb|AAY79988.1| 50S ribosomal protein L4E [Sulfolobus acidocaldarius DSM 639] Length = 266 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 66/236 (27%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--- 59 ++SV +L G I + F+ ++ ++ RV + + KGR +A Sbjct: 9 KVSVLDLKGNQLEEIELPL-FFSYPVRKDLIRRVFLSEFTKSLQ----PKGRDPLAGKRT 63 Query: 60 ---------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLA 109 +++ KG+G A GG AF P V + K + L Sbjct: 64 SALSFGINLGIARVPRVKGSGEAAL----APNTVGGRLAFPPTTEKRLVEEVNLKEKKLG 119 Query: 110 LRHALSD------------KFCSND--IMVIDNLVSKECKTKYLVTRFRALDL------- 148 + AL+ +F SN+ I+++D+ + K K ++ +++ + Sbjct: 120 IISALAATADPNFVKARGHRFTSNNVPIILVDDFENIS-KAKEIMDILKSIGVVDDIKRV 178 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 LI+ + +A NIP +N++ ++V Sbjct: 179 KESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVE-SASNIPGVNVVSANLVSV 233 >gi|301111776|ref|XP_002904967.1| 60S ribosomal protein L4 [Phytophthora infestans T30-4] gi|262095297|gb|EEY53349.1| 60S ribosomal protein L4 [Phytophthora infestans T30-4] Length = 387 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 56/259 (21%) Query: 4 LSVRNLDGEDKGVIS--VSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56 +SV +++GE V S V +F + ++ V + +R + + +E Sbjct: 11 VSVLSVEGETATVASQVVLPAVFTAPIRPDVVNFVHTNMAKNRRQAYGVSREAGHQHSAE 70 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G + GG+ F P + R A+ Sbjct: 71 SWGTGRAVSRIPRIQGGGNQSSGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQRRFAVA 130 Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS-------- 149 AL+ + I +V+D+ V KT + + Sbjct: 131 SALAASAVPALVMARGHRIEKVPEVPLVLDDSVEATQKTTQALKVLAKIGADVEIEKVKA 190 Query: 150 NALIIDGCQLDRN------------------FQLAARNIPNINLLPVQGINVYDILRCSK 191 + I G RN + A RNIP + L V+ +N+ + Sbjct: 191 SKKITTGRGKSRNRRYTTRRGPLIVYANGNGAEKAFRNIPGVELAHVERLNLLQLAPGGH 250 Query: 192 L----VLSKSAIEALEDRF 206 + + +KSA + L+ + Sbjct: 251 VGRFIIWTKSAFQKLDALY 269 >gi|123490224|ref|XP_001325568.1| ribosomal protein [Trichomonas vaginalis G3] gi|121908469|gb|EAY13345.1| ribosomal protein, putative [Trichomonas vaginalis G3] Length = 370 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 55/228 (24%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVA 58 ++V +G+ I + +F + ++ V + + + K S ++ Sbjct: 5 TVNVLTQEGQKASTIEL-PKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63 Query: 59 YTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 + + + G+G R+ + + F GG F P +P + R Sbjct: 64 WGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123 Query: 109 ------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A H L + I+V+D + + +T+ V + + + Sbjct: 124 AIAATAVVPLVQARGHVLGE-VKEVPIVVVDAVQ-EIKRTRDAVELLKKVGVYGDVQRVL 181 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + + D+ A RNIP + + V Sbjct: 182 DGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISV 229 >gi|281203811|gb|EFA78007.1| 60S ribosomal protein L4 [Polysphondylium pallidum PN500] Length = 367 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 58/255 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 + V N + G + + + + ++ V + R + S + +E Sbjct: 7 VQVYNGENAVSGKVKL-PAVLTTPIRPDLVNFVHTNVNKNHRQAYAPSSHAGEQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS------ 107 TG ++ G+G R + GG+ +GP + + Sbjct: 66 GTGRAVARIPRVAGSGTHRSGQGAFGNMCRGGRMYGPNKVWRKWNRKVNVNHKRYAVASA 125 Query: 108 ----------LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--------S 149 +A H +S ++V ++++ KT V + L+ Sbjct: 126 LAASAIPALVMARGHQISQ-IAEVPLVVANSVIDSLTKTNAAVALLKKLNAFADVQRCDD 184 Query: 150 NALIIDGCQLDRN------------------FQLAARNIPNINLLPVQGINVYDILRCSK 191 + + G RN A RN+P +++ V +N+ + Sbjct: 185 SKHLRAGAGKSRNRRYTIRRGPLIVCSGKSQLSHAFRNLPGVDVANVSRLNLLKLAPGGH 244 Query: 192 L---VL-SKSAIEAL 202 L V+ ++SA E L Sbjct: 245 LGRFVIWTQSAFEQL 259 >gi|17367847|sp|Q9XF97|RL4_PRUAR RecName: Full=60S ribosomal protein L4; AltName: Full=L1 gi|4887131|gb|AAD32206.1|AF134732_1 60S ribosomal protein L1 [Prunus armeniaca] Length = 408 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 68/266 (25%) Query: 4 LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54 ++V++L+G+ +++ + + + I+ V S R + SK Sbjct: 12 VTVQSLEGDMATDQTQTVALPD-VMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTS 70 Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109 +E TG ++ G G R + GG+ F P + + A Sbjct: 71 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA 130 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------- 147 + A++ + I +V+ + + +T + + + Sbjct: 131 VVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKA 190 Query: 148 --------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 LI+ G + A RNIP I+++ V+ +N +L Sbjct: 191 KDSHSIRPGKGKMRNRRYINRKGPLIVYGTEG-AKLVKAFRNIPGIDIINVERLN---LL 246 Query: 188 R-------CSKLVLSKSAIEALEDRF 206 + +V +KSA E L+ + Sbjct: 247 KLAPGGHLGRFVVWTKSAFEKLDSIY 272 >gi|124028158|ref|YP_001013478.1| 50S ribosomal protein L4P [Hyperthermus butylicus DSM 5456] gi|123978852|gb|ABM81133.1| 50S ribosomal protein L4 [Hyperthermus butylicus DSM 5456] Length = 277 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 67/263 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 + V NL+G + + +F L + ++ R + + KGR +A Sbjct: 17 PRVPVYNLEGSVAEEVQL-PRVFGLPVRIDLIRRAFLSEFTARLQ----PKGRDPLAGKR 71 Query: 60 ----------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSL 108 +++ G GRA + + GG A P +H + KK + L Sbjct: 72 TTARSFGVGLGIARVPRIPGLGRAAF--INSA--VGGHLAHPPRVEKKIHEEINKKEKKL 127 Query: 109 ALRHALSDKFCSN--------------DIMVIDNLVSKECKTKYLVTRFRALDL------ 148 A AL+ ++V+D + + + K L + Sbjct: 128 ATASALAATARKEFVEKRGHRFPAQTVPVIVVDEVETSITRVKEAKLLLEKLGVWSDIER 187 Query: 149 ---------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187 +++ + +F A +P +++ +NV + Sbjct: 188 AKERTRIRAGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWNVNVLQLA 247 Query: 188 ---RCSKL-VLSKSAIEALEDRF 206 +L V+++SA+E L RF Sbjct: 248 PGGVPGRLTVITRSALEELGKRF 270 >gi|320588706|gb|EFX01174.1| 60S ribosomal protein [Grosmannia clavigera kw1407] Length = 356 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 81/265 (30%), Gaps = 60/265 (22%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ +F + I+ +V + KR S S + +E Sbjct: 5 PTVTIHGADGKPTSTSQPIPAVFLSPIRPDIVQQVHTGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ G G R + G+ F P + + + A Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRFATA 124 Query: 112 HALS-------DKFCSNDI-------MVIDNLVSKEC---KTKYLVTRFRALD----LSN 150 A++ + I +V+D+ E KT V AL LS Sbjct: 125 SAVAASGVAPLLLARGHKISSIPEVPLVVDSAAFAEAAYAKTAKAVALLTALGAGDELSK 184 Query: 151 A------------------------LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185 L I ++D + RNIP + V +N+ Sbjct: 185 VRNSKKLRAGKGKLRGRRYRQRRGPLFIYDPEVDGKELVHGFRNIPGVETNSVFALNLLQ 244 Query: 186 ILRCSKL---VL-SKSAIEALEDRF 206 + L V+ + +A AL+ + Sbjct: 245 LAPGGHLGRFVIWTSAAFAALDKIY 269 >gi|1350686|sp|P49165|RL4_URECA RecName: Full=60S ribosomal protein L4; AltName: Full=L1 gi|929961|gb|AAA74021.1| ribosomal protein [Urechis caupo] Length = 386 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 84/260 (32%), Gaps = 60/260 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 ++V + G +F + I+ V R + S + +E Sbjct: 7 ITVHSDKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESW 66 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + G + F P + R AL A Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSA 126 Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 ++ ++ ++V D++ S + KTK V R L D+ Sbjct: 127 IAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIK-KTKEAVVVLRRLKAWPDVEKVKNS 185 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 LII G D A RNIP I L+ V +N+ + Sbjct: 186 RRFRAGKGKLRNRRAIQRRGPLIIYGT--DNGISRAFRNIPGITLVNVNRLNLLSMAPGG 243 Query: 191 KL----VLSKSAIEALEDRF 206 + + ++SA + L++ + Sbjct: 244 HVGRFCIWTESAFKQLDNIY 263 >gi|313211779|emb|CBY15952.1| unnamed protein product [Oikopleura dioica] Length = 213 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 24/168 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + DG+ +F + ++ V S R S S+ +E Sbjct: 8 VSVYSRDGKPVSEFVNLPAVFKAPIRSDVVQFVHTNISKNARQPYSVSRVAGEETSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G +R + + GG+ F P + R A A Sbjct: 68 GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNITQRRFATVSA 127 Query: 114 LSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRALD 147 ++ + V++N V KTK V +++ Sbjct: 128 IAATGIPVLAMAKGHFISNVPEFPLVLENSVESLKKTKEAVKTLKSVG 175 >gi|297527409|ref|YP_003669433.1| 50S ribosomal protein L4P [Staphylothermus hellenicus DSM 12710] gi|297256325|gb|ADI32534.1| 50S ribosomal protein L4P [Staphylothermus hellenicus DSM 12710] Length = 271 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 70/261 (26%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TGSK 63 V + GE I + IF+L ++ ++ R + KGR +A T ++ Sbjct: 18 VFSSAGEKVEEIIL-PTIFSLPVRKDLIRRAFLA----AFTSMLQPKGRDPLAGKRTTAR 72 Query: 64 MYVQKGTGRARHSSKSVSQF-----------RGGGKAFGPVPIIGVH-ALPKKVRSLALR 111 + G GR V + RGG AF P P +H + K+ ++ A+ Sbjct: 73 SW---GVGR---GLARVPRLPNSRAAFISFARGGHAAFPPRPDERIHERINKREKAYAVA 126 Query: 112 HALSD------------KFCSNDIMVI--DNLVSKECKTKYLVTRFRALDL--------- 148 A++ F + + V+ D++ K K + L L Sbjct: 127 SAIAATAKVELVRERGHIFQQDKLPVVLLDDVEEKISKAREAKELLVKLGLWSDIVRSYE 186 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187 +++ ++ F A RN P +++ + + + Sbjct: 187 RIRIRAGRGKMRGRRYVEPRSILFVVTSYNKPFAKAVRNFPGVDVATPNNLGILHLAPGG 246 Query: 188 RCSKL-VLSKSAIEALEDRFK 207 +L V ++SA+E + +++ Sbjct: 247 VPGRLTVFTRSALEDISSKYE 267 >gi|284997895|ref|YP_003419662.1| ribosomal protein L4/L1e [Sulfolobus islandicus L.D.8.5] gi|284445790|gb|ADB87292.1| ribosomal protein L4/L1e [Sulfolobus islandicus L.D.8.5] Length = 267 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 71/261 (27%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + + DG + + IF+ ++ I+ RV + KGR +A Sbjct: 12 ILDKDGNKVKEVEL-PFIFSFPVRKDIIRRVFLAEFTHSLQ----PKGRDPMAGKRTSAE 66 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 +++ K +G A GG F P V + K + LA+ Sbjct: 67 SFGINLGMARVPRVKNSGEAAL----APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVIS 122 Query: 113 ALSDKFCSNDIMV-------IDNLVSKECKTKYLVTRFRALDLSNAL------------- 152 ALS ++ + V D++ T +V A ++ L Sbjct: 123 ALS--ATADKVFVKARGHVFKDSVSFPIVVTDDIVRLKTASEVEEFLEKIGVYDDVKRVK 180 Query: 153 -----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI--- 186 +I + AARNI ++++ + ++V + Sbjct: 181 ERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG 240 Query: 187 LRCSKL-VLSKSAIEALEDRF 206 +L + ++++I+ L++R Sbjct: 241 AHSGRLTIYTETSIKILDERL 261 >gi|39946140|ref|XP_362607.1| 60s ribosomal protein L2 [Magnaporthe oryzae 70-15] gi|145019448|gb|EDK03676.1| 60s ribosomal protein L2 [Magnaporthe oryzae 70-15] Length = 371 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 10/117 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G ++F + I+ +V + + KR + S + +E Sbjct: 5 PTVTIIGADGKASGATHPIPNVFTAPIRPDIVQQVHKGMAKNKRQPYAVSEKAGHQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL 108 TG ++ G G R + G+ F P + + + Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHIKVNQGQKRF 121 >gi|15897622|ref|NP_342227.1| 50S ribosomal protein L4P [Sulfolobus solfataricus P2] gi|284174947|ref|ZP_06388916.1| 50S ribosomal protein L4P [Sulfolobus solfataricus 98/2] gi|11134368|sp|Q9UXA6|RL4_SULSO RecName: Full=50S ribosomal protein L4P gi|6015759|emb|CAB57586.1| ribosomal protein L4 (HMAL4) [Sulfolobus solfataricus P2] gi|13813887|gb|AAK41017.1| LSU ribosomal protein L4AE (rpl4AE) [Sulfolobus solfataricus P2] gi|261602390|gb|ACX91993.1| 50S ribosomal protein L4P [Sulfolobus solfataricus 98/2] Length = 267 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 87/258 (33%), Gaps = 59/258 (22%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ-----SWRKRIGCSKSKGRSEV 57 + + + DG + + IF+ ++ ++ RV + + R + + +E Sbjct: 9 KSDILDKDGNRIKEVEL-PIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAES 67 Query: 58 AY---TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHA 113 +++ K +G A GG AF P V K + LA+ A Sbjct: 68 FGINLGMARVPRVKNSGEAAL----APNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISA 123 Query: 114 LSDKF------CSNDI--------MVIDNLVSKECKTKYLVTRFRALDLSNAL------- 152 LS + +V+ + + T + + + + + + Sbjct: 124 LSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERI 183 Query: 153 --------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRC 189 +I + AARN+ ++++ + ++V + Sbjct: 184 RIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHP 243 Query: 190 SKL-VLSKSAIEALEDRF 206 +L + ++S+I+ L++R Sbjct: 244 GRLTIYTESSIKILDERL 261 >gi|255513435|gb|EET89701.1| ribosomal protein L4/L1e [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 261 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 93/254 (36%), Gaps = 55/254 (21%) Query: 1 MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWR--KRIG--------CS 49 M + + V N+DG+ + ++E +F + + ++ R ++ + G + Sbjct: 1 MAKSIDVLNIDGKKDHKLDLAE-VFDTEIEPWLIRRAAIAENTYGLQPQGHFPLAGMQTT 59 Query: 50 KSKGRSEVAYT-----GSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGP-VPIIGVHALP 102 + ++Y G + ++ G K + G +A + V + Sbjct: 60 AQYYGAMMSYRTGRHMGRAIRPREKLGGGVQGKVKRIPSSVKGKRAHPHMIEKKLVEKMN 119 Query: 103 KKVRSLALRHALSDKFCSNDI------MVIDNLVSKECKTKYLVTRFRALDL-------- 148 KK A++ A++ SN +V + + K+K ++ +A+++ Sbjct: 120 KKEYQAAIKSAIAYSASSNLASGVETPIVFSDTLESVKKSKDIIKMLKAINIYKLISDKS 179 Query: 149 ----------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189 II D A+RNIP I + + + V D++ Sbjct: 180 KREKGTSRRTQRKAFSKKIAIIVLN--DDGAVRASRNIPGITAVKLSALKVNDLVPGGEH 237 Query: 190 SKL-VLSKSAIEAL 202 + + S+SA++++ Sbjct: 238 PLVPIWSESALKSI 251 >gi|261327248|emb|CBH10224.1| 60S ribosomal protein L4 [Trypanosoma brucei gambiense DAL972] Length = 328 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 86/259 (33%), Gaps = 55/259 (21%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55 +SV + + + G S+ +F + ++ V + R + K + Sbjct: 5 PSVSVYSASEDKVVGTCSL-PAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G + + + GG+ F P + + A+ Sbjct: 64 ESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAV 123 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-LSNALIID 155 AL+ + I +V+++ V KTK +T + + + + ++ Sbjct: 124 VSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVN 183 Query: 156 GCQ------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D A RNI ++L V +N+ + Sbjct: 184 DSRQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGH 243 Query: 192 L---VL-SKSAIEALEDRF 206 + ++ +KSA E L+ F Sbjct: 244 VGRFIIWTKSAFEKLDKIF 262 >gi|126649327|ref|XP_001388335.1| 60S ribosomal protein-like [Cryptosporidium parvum Iowa II] gi|32398896|emb|CAD98361.1| 60S ribosomal protein-like, probable [Cryptosporidium parvum] gi|126117429|gb|EAZ51529.1| 60S ribosomal protein-like, putative [Cryptosporidium parvum Iowa II] Length = 394 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 67/265 (25%) Query: 4 LSVR--NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-SKSKG----RSE 56 +SV N + I + +F + ++ V S KR +K +E Sbjct: 8 VSVFPSNDSTKATSSIPL-PTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAE 66 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G +R + GG F P + + A+ Sbjct: 67 SWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVA 126 Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD---------L 148 ++ N++ +VI N + KT V F+ + Sbjct: 127 AAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRI 186 Query: 149 SNAL--------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 +++ ++ + D A RNI ++ V+ +N +LR Sbjct: 187 ESSIAIRCGKGKMRNRRRVCAVGPLVVYAE-DNGIVKAMRNIKGVDTCSVERLN---LLR 242 Query: 189 ------CSKL-VLSKSAIEALEDRF 206 +L + +K AI+ L++ + Sbjct: 243 LAPGGTFGRLTIFTKGAIKRLQEIY 267 >gi|123449817|ref|XP_001313624.1| ribosomal protein [Trichomonas vaginalis G3] gi|123486300|ref|XP_001324688.1| ribosomal protein [Trichomonas vaginalis G3] gi|121895514|gb|EAY00695.1| ribosomal protein, putative [Trichomonas vaginalis G3] gi|121907575|gb|EAY12465.1| ribosomal protein, putative [Trichomonas vaginalis G3] Length = 370 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 55/228 (24%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVA 58 ++V DG+ I + +F + ++ V + + + K S ++ Sbjct: 5 TVNVLAQDGQKASTIEL-PKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63 Query: 59 YTGSK----MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 + + + G+G R+ + + F GG F P +P + R Sbjct: 64 WGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123 Query: 109 ------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL-------- 148 A H L + I+V+D + + +T+ V + + + Sbjct: 124 AIAATAVVPLVQARGHVLGE-VKEVPIVVVDAVQ-EIKRTRDAVELLKKVGVYGDVQRVL 181 Query: 149 ------------------SNALIIDGCQLDRNFQLAARNIPNINLLPV 178 + + D+ A RNIP + + V Sbjct: 182 DGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISV 229 >gi|227830388|ref|YP_002832168.1| 50S ribosomal protein L4P [Sulfolobus islandicus L.S.2.15] gi|259491572|sp|C3MQ60|RL4_SULIL RecName: Full=50S ribosomal protein L4P gi|227456836|gb|ACP35523.1| Ribosomal protein L4/L1e [Sulfolobus islandicus L.S.2.15] Length = 267 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 71/261 (27%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + + DG + + IF+ ++ I+ RV + KGR +A Sbjct: 12 ILDKDGNKVKEVEL-PFIFSFPVRKDIIRRVFLAEFTHSLQ----PKGRDPMAGKRTSAE 66 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 +++ K +G A GG F P V K + LA+ Sbjct: 67 SFGINLGMARVPRVKNSGEAAL----APNTVGGRLTFPPSVDKKLVEEANDKEKQLAVIS 122 Query: 113 ALSDKFCSNDIMV-------IDNLVSKECKTKYLVTRFRALDLSNAL------------- 152 ALS ++ + V D++ T +V+ A ++ L Sbjct: 123 ALS--ATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVK 180 Query: 153 -----------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187 +I + AARNI ++++ + ++V + Sbjct: 181 ERIRIRAGKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPG 240 Query: 188 -RCSKL-VLSKSAIEALEDRF 206 +L + ++++I+ L++R Sbjct: 241 THSGRLTIYTETSIKILDERL 261 >gi|194376602|dbj|BAG57447.1| unnamed protein product [Homo sapiens] Length = 227 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 54/221 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGETSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPN 172 II D A RNIP Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPG 226 >gi|219113891|ref|XP_002176132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402924|gb|EEC42883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 334 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 55/231 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVAY 59 +SV +L G+ G +S+ + + I+ V + R + K ++ Sbjct: 7 VSVFSLSGDKSGDVSL-PAVMTAPLRPDIVQFVHTNMNKNHRQAYAVNIRAGKQVVASSW 65 Query: 60 TG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 +++ G G +R + GG+ F P + + A+ Sbjct: 66 GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFDPTKTWRKWNKKINISQKRYAVASA 125 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 +S +++ +V++N V KT A+ Sbjct: 126 LAATAVPALVMSRGHVVDNVPEIPLVVENAVESAKKTSAAKDILSAIGALDDVEKAGESK 185 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L+I + + + A RN+P + L V +N Sbjct: 186 QIRAGKGKMRNRRYTLRRGPLVI--YKSNDGVEQAFRNLPGVELCCVDRLN 234 >gi|159145606|gb|ABW90340.1| putative ribosomal protein L4 [Sipunculus nudus] Length = 151 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 10/123 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV N E G +F + I+ V R + S + +E Sbjct: 8 ISVYNEKAEVSGDTIKLPAVFKAPIRPDIVNFVHFEMKKNSRQPYAVSNKAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113 TG ++ +G G R + GG+ F P + + A+ A Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINVNQKRYAVCSA 127 Query: 114 LSD 116 ++ Sbjct: 128 IAA 130 >gi|149504951|ref|XP_001519357.1| PREDICTED: similar to ribosomal protein L4, partial [Ornithorhynchus anatinus] Length = 203 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 24/171 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 29 ISVYSEKGEVSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 88 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 89 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 148 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150 +S +I +V+++ V KTK V + L N Sbjct: 149 LAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 199 >gi|224000902|ref|XP_002290123.1| RL4e, ribosomal protein 4e 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] gi|220973545|gb|EED91875.1| RL4e, ribosomal protein 4e 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] Length = 378 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 51/229 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSK-GRSEVA 58 +SV +L GE G ++ E + + I+ V + R K +E Sbjct: 7 VSVFSLTGEKAGETTLPE-VMTAPMRTDIVQFVHTNMNKNNRQAYAVNVHAGKLVSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL----- 108 TG ++ G G +R + GG+ F P + + Sbjct: 66 GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFAPTKTWRKWHRKINVTQKRYAVASA 125 Query: 109 -------ALRHALSDKFCSNDIM--VIDNLVSKECKTKYLVTRFRALD--------LSNA 151 AL A K + V+DN + KT A+ + Sbjct: 126 LAATAVPALVMARGHKVDDVPEIPLVLDNTLESAKKTSAAKDILAAVGALADVEKAADSK 185 Query: 152 LI------------------IDGCQLDRNFQLAARNIPNINLLPVQGIN 182 I + + + + A RN+P + L V +N Sbjct: 186 KIRAGKGKARNRRYTLRRGPLVIYKSNDGVEQAFRNLPGVELCCVDRLN 234 >gi|219121527|ref|XP_002181116.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407102|gb|EEC47039.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 397 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 55/231 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVAY 59 +SV +L G+ G +S+ + + I+ V + R + K ++ Sbjct: 32 VSVFSLSGDKSGDVSL-PAVMTAPLRPDIVQFVHTNMNKNHRQAYAVNIRAGKQVVASSW 90 Query: 60 TG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112 +++ G G +R + GG+ F P + + A+ Sbjct: 91 GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFDPTKTWRKWNKKINISQKRYAVASA 150 Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD------------ 147 +S +++ +V++N V KT A+ Sbjct: 151 LAATAVPALVMSRGHVVDNVPEIPLVVENAVESAKKTSAAKDILSAIGALDDVEKAGESK 210 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 L+I + + + A RN+P + L V +N Sbjct: 211 QIRAGKGKMRNRRYTLRRGPLVI--YKSNDGVEQAFRNLPGVELCCVDRLN 259 >gi|224062820|ref|XP_002200110.1| PREDICTED: ribosomal protein L4 [Taeniopygia guttata] Length = 383 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 54/223 (24%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + ++ V R + S + +E Sbjct: 8 ISVYSEKGEASGKNVTLPAVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNIMQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL---- 152 +S +I +V+++ V KTK L+ + +A + + Sbjct: 128 LAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNIN 174 II D A RNIP I Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIRAFRNIPGIT 228 >gi|227827692|ref|YP_002829472.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.14.25] gi|229584896|ref|YP_002843398.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.16.27] gi|238619863|ref|YP_002914689.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.16.4] gi|259491570|sp|C3N5S8|RL4_SULIA RecName: Full=50S ribosomal protein L4P gi|259491571|sp|C4KHF7|RL4_SULIK RecName: Full=50S ribosomal protein L4P gi|259491573|sp|C3MVH9|RL4_SULIM RecName: Full=50S ribosomal protein L4P gi|227459488|gb|ACP38174.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.14.25] gi|228019946|gb|ACP55353.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.16.27] gi|238380933|gb|ACR42021.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.16.4] gi|323474750|gb|ADX85356.1| ribosomal protein L4/L1e [Sulfolobus islandicus REY15A] gi|323477478|gb|ADX82716.1| ribosomal protein L4/L1e [Sulfolobus islandicus HVE10/4] Length = 267 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 67/259 (25%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY------ 59 + + DG + + IF+ ++ I+ RV + KGR +A Sbjct: 12 ILDKDGNKVKEVEL-PFIFSFPVRKDIIRRVFLAEFTHSLQ----PKGRDPMAGKRTSAE 66 Query: 60 ------TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112 +++ K +G A GG F P V + K + LA+ Sbjct: 67 SFGINLGMARVPRVKNSGEAAL----APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVIS 122 Query: 113 ALSD----KFCSNDIMVI-DNLVSKECKTKYLVTRFRALDLSNAL--------------- 152 ALS F V D++ T +V+ A ++ L Sbjct: 123 ALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKER 182 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188 +I + AARNI ++++ + ++V + Sbjct: 183 IRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAH 242 Query: 189 CSKL-VLSKSAIEALEDRF 206 +L + ++++I+ L++R Sbjct: 243 PGRLTIYTETSIKILDERL 261 >gi|296204118|ref|XP_002749189.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus] Length = 219 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 24/171 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 28 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 87 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 88 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 147 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150 +S ++ +V+++ V KTK V + L N Sbjct: 148 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 198 >gi|146170339|ref|XP_001017488.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila] gi|146145029|gb|EAR97243.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila SB210] Length = 410 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 72/251 (28%), Gaps = 71/251 (28%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGC-SKSKGRSEVAYTGS-KMYVQKGTGRA----- 73 +F + I+ +V + ++ K R S + + GTGRA Sbjct: 26 PAVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESW---GTGRAVARIP 82 Query: 74 RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK---------------- 117 R R G AFG G P K R ++ Sbjct: 83 RVG--GSGTHRSGQAAFGNQCRKGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVP 140 Query: 118 ---FCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-------------------- 147 + I V D+ V KTK V + + Sbjct: 141 LVFARGHRISNVQELPYVFDDSVESYEKTKQAVAFLKRVGAYDDVLRVAETKALRAGQGK 200 Query: 148 --------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLS 195 L++ G + A RNIP +++ V +N+ + + + + Sbjct: 201 LRNRRYKLRRGPLVVYGNEKS-TLTRALRNIPGVDVCNVNRLNLLQLAPGGHVGRFIIWT 259 Query: 196 KSAIEALEDRF 206 +SA + L + F Sbjct: 260 ESAFKKLNEIF 270 >gi|70909605|emb|CAJ17228.1| ribosomal protein L4e [Eucinetus sp. APV-2005] Length = 432 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 84/260 (32%), Gaps = 63/260 (24%) Query: 6 VRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAY 59 V + E G + +F + ++ V + S+ R S SK +E Sbjct: 12 VYSEKSEQVKGKVIPLPVVFKAPIRPDVVNFVHQQVSFNHRQPYSVSKEAGHQTSAESWG 71 Query: 60 TGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH-- 112 TG ++ +G G R + GG+ F P + R A+ Sbjct: 72 TGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWYRRVNVNQRRYAVASAV 131 Query: 113 ------ALSDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DLSNA--- 151 AL I+ V+ + + + KTK V R + D+ Sbjct: 132 AASGIPALVQ--SKGHIIDNIPELPLVVSDKIQELTKTKQAVIFLRRIKAWADIEKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 LI+ D+ + A RNIP I L+ V +N+ + Sbjct: 190 QRFRAGKGKMRNRRRIQRRGPLIVYHE--DQGLRRAFRNIPGIELIHVDRLNLLKLAPGG 247 Query: 191 KL----VLSKSAIEALEDRF 206 + + ++SA E L+ F Sbjct: 248 HVGRFIIWTQSAFEKLDKIF 267 >gi|162605830|ref|XP_001713430.1| 60s ribosomal protein L1 [Guillardia theta] gi|13794362|gb|AAK39739.1|AF083031_96 60s ribosomal protein L1 [Guillardia theta] Length = 255 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVAYTG----SKMYVQKGTGR 72 +F K + I+ V + KR + G S V++ S++ G+G Sbjct: 20 PKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAVSRVPRVPGSGT 79 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDI------- 123 R +++ F GG+ F P H + K R A+ A++ + I Sbjct: 80 HRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVSRGYRV 139 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD--------LSNALIIDGCQLD-------- 160 VI++ + K KT+ L+ L L L ++ Sbjct: 140 KTIPEIPFVIEDSIEKIPKTRDLIKILTTLGINSIVRNKLKRKLKSGKGKMRNRRFKKPT 199 Query: 161 ------RNFQLAARNIPNINLLPVQGIN 182 +N + RNI NI+ + + +N Sbjct: 200 GPLLVFKNNLKSLRNIANIDCMKISALN 227 >gi|29841119|gb|AAP06132.1| hypothetical protein [Schistosoma japonicum] Length = 135 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 14 KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK 50 G++ + DIFA+ P+ ++ + L WQ+ + I Sbjct: 96 VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRC 132 >gi|268306392|gb|ACY95317.1| ribosomal protein L4 [Manduca sexta] Length = 439 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 55/258 (21%) Query: 4 LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 +SV + E ++ +F + ++ V S R + + +E Sbjct: 10 VSVYSEKSEVVAGKTIPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 TG ++ +G G R + GG+ F P + + R Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAAVAA 129 Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157 R + +K ++V D + + ++ R S+ L + Sbjct: 130 ALAASGVPALVQARGHIIEKIPELPLVVSDKVQEITKTKQAVIFLRRVKAWSDVLKVYKS 189 Query: 158 Q-------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 Q D+ A RNIP + +L V +N+ + L Sbjct: 190 QRLRAGKGKMRNRRRVQRKGPLIIYHKDKGLSRAFRNIPGVEMLNVNKLNLLKLAPGGHL 249 Query: 193 ----VLSKSAIEALEDRF 206 + ++SA + L+ F Sbjct: 250 GRFIIWTQSAFDRLDALF 267 >gi|108743789|gb|ABG02203.1| IP15855p [Drosophila melanogaster] Length = 233 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 64/221 (28%), Gaps = 55/221 (24%) Query: 4 LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV E ++ +F + ++ V + R + S + +E Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + R AL Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129 Query: 113 ALSD----KFCSNDIMVIDNLVS----------KECKTKYLVTRFRAL----DLSNA--- 151 A++ + VID + K KTK V R L D+ Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189 Query: 152 ---------------------LIIDGCQLDRNFQLAARNIP 171 L++ D + A RNIP Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVV--YDKDEGLRKAFRNIP 228 >gi|67043811|gb|AAY64003.1| ribosomal protein L4 [Pelodiscus sinensis] Length = 193 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 24/171 (14%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGEVSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127 Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150 +S ++ +V+++ V KTK V + L N Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 178 >gi|326578099|gb|ADZ95693.1| 60S ribosomal protein L4 [Nosema bombycis] Length = 192 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 24/172 (13%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA---- 58 ++++ NLDG D+ ++ + I+ V + R + SK Sbjct: 4 KINIYNLDGNTVKDTVEMPDVMTIEVRPDIIETVHSLERLNLRQPYAVSKYAGMQHSAAS 63 Query: 59 -YTGSKMYVQK---GTGRARHSSKS-VSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRH 112 TG M G+G R + + R G A + +R +A+ Sbjct: 64 WGTGRAMARCPRVAGSGTRRAGQGAFANFCRKGRMAHPTKTTRRWCRKVNLNLRRIAIAM 123 Query: 113 ALSD------------KFCSNDIM--VIDNLVSKECKTKYLVTRFRALDLSN 150 A++ K + ++ ++ + V KTK + L + Sbjct: 124 AVAASSKPSFVQARGHKVDNVKMIPLIVSDEVMSLTKTKDAFELIQNFGLED 175 >gi|297741490|emb|CBI32622.3| unnamed protein product [Vitis vinifera] Length = 344 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 35/200 (17%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 30 PDVMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 89 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130 R + GG+ F P + + Sbjct: 90 HRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKPKDSHAI----------------- 132 Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190 + R R + LI+ G + A RNIP + + V +N+ + Sbjct: 133 --RPGKGKMRNR-RYISRKGPLIVYGTEG-AKLVKAFRNIPGVEVANVDRLNLLKLAPGG 188 Query: 191 KL---VL-SKSAIEALEDRF 206 L V+ +KSA E L+ + Sbjct: 189 HLGRFVIWTKSAFEKLDSIY 208 >gi|24380366|ref|NP_722321.1| 50S ribosomal protein L4 [Streptococcus mutans UA159] gi|24378385|gb|AAN59627.1|AE015024_19 50S ribosomal protein L4 [Streptococcus mutans UA159] Length = 31 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 19/30 (63%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQ 30 M + + + G++ G +++++ IF ++P + Sbjct: 1 MANVKLFDQTGKEAGEVTLNDAIFGIEPNE 30 >gi|119873282|ref|YP_931289.1| 50S ribosomal protein L4P [Pyrobaculum islandicum DSM 4184] gi|119674690|gb|ABL88946.1| LSU ribosomal protein L4P [Pyrobaculum islandicum DSM 4184] Length = 281 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 71/235 (30%), Gaps = 63/235 (26%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62 +L V DG I F + I+ R + KG E G Sbjct: 26 KLKVYGRDGAYVADID-PPVHFMEPVRPDIIRRAYLSALSARFQ----PKGVYE--GAGK 78 Query: 63 KMYVQK---GTGRARH----SSK-----SVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLA 109 + + G G AR S RGG +A P +H + KK ++ A Sbjct: 79 EHSCESFGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPRVEKKLHEEINKKEKNFA 138 Query: 110 LRHALS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL------ 148 +R A++ DK S ++V+ ++ + K K F L L Sbjct: 139 IRSAIAATAYKSWVMARGHIIDKVPSLPLVVVSDVENIS-KAKEAKKLFEVLGLWPDVER 197 Query: 149 --SNALIIDGCQLDRN-------------------FQLAARNIPNINLLPVQGIN 182 I G R A RN P ++++ V +N Sbjct: 198 AAEGVKIRAGKGKMRGRRYKEPKSVLVVVSSSKAPLAFAVRNFPGVDVVSVDNLN 252 >gi|73993914|ref|XP_850171.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis familiaris] Length = 411 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 84/255 (32%), Gaps = 61/255 (23%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TG 61 +SV GE G +F + I+ V R + SE+A T Sbjct: 8 ISVYYEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKSNRQPYAV----SELAGHQTS 63 Query: 62 SKMYVQKGTGR--ARHSSKSVSQFRGGGKAFGPVPI--IGVHALPKKVRSLALR------ 111 ++ + GTGR AR + GG+ F P + + A+ Sbjct: 64 AESW---GTGRAVARIPRGAFGNMCRGGRMFAPTKTWCRWHRRVNTTQKRYAICSALAAS 120 Query: 112 ----HALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNAL-------- 152 +S ++ +V+++ V KTK L+ + +A + + Sbjct: 121 ALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRA 180 Query: 153 -----------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192 II D A RNIP I LL V +N+ + + Sbjct: 181 GKGKMRNRRRIQRRGPCII--YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238 Query: 193 -VLSKSAIEALEDRF 206 + ++SA L+D + Sbjct: 239 CIWTESAFRKLDDLY 253 >gi|268323276|emb|CBH36864.1| 50S ribosomal protein L4P [uncultured archaeon] Length = 268 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 8/110 (7%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GC---SKSKGRSEVAY 59 V +L G I++ +F + + ++ + + G + K +E Sbjct: 8 KVVDLSGNFVREITLPP-VFMEEYRPDLIKTAVLAMQSNRLQPKGTDLLAGRKTSAESWG 66 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSL 108 G + R + Q GG +A P I + KK R Sbjct: 67 PGRAVARVPRIKDGRR-AARAPQTVGGRRAHPPKVEKILKRKINKKERRK 115 >gi|190408801|gb|EDV12066.1| ribosomal protein L4A [Saccharomyces cerevisiae RM11-1a] Length = 362 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFAKLDQVW 262 >gi|225322928|gb|ACN86307.1| ribosomal protein-like protein [Pectinaria gouldii] Length = 161 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 12/124 (9%) Query: 4 LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + G +++ +F + I+ V +R + S + +E Sbjct: 9 VSVYSDKGTVTDRQVTL-PAVFKAPIRTDIVNFVHFQVQKNQRQAYAVSEKAGHQTSAES 67 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHKRVNVNQKRYAICS 127 Query: 113 ALSD 116 A++ Sbjct: 128 AIAA 131 >gi|118489137|gb|ABK96375.1| unknown [Populus trichocarpa x Populus deltoides] Length = 407 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 59/243 (24%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + SK +E TG ++ G G Sbjct: 31 PDVMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGT 90 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---------HALSDK---- 117 R + GG+ F P + + A+ + + Sbjct: 91 HRAGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRV 150 Query: 118 --FCSNDIMVIDNLVSKECKTKYLVTRFRALD---------------------------- 147 +++ D+ S E KT + + + Sbjct: 151 ESVPEMPLIISDSAESIE-KTSTAIKVLKEIGAFPDAEKAKDSHAIRPGKGKMRNRRYIS 209 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALE 203 LI+ G + + A RNIP + + V+ +N+ + L V+ +KSAIE L+ Sbjct: 210 RKGPLIVYGTEGAKMV-KAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAIEKLD 268 Query: 204 DRF 206 + Sbjct: 269 SIY 271 >gi|269986341|gb|EEZ92642.1| ribosomal protein L4/L1e [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 237 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 38/184 (20%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVL---------------------RWQSW 42 + V ++DG++ G I + E +F L + + Sbjct: 2 VKVFSIDGKESGSIELPE-VFNTPVNYQTLKKAFLAEDSERFQLKYTDPMAGKRKVARLT 60 Query: 43 RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHAL 101 ++R S GR + T K + GT GG +A P V + Sbjct: 61 KRRRSYKTSYGRG-LDRTPRKTLSKVGTNFYYVGPV-APNTVGGREAHPPQAEKRLVKGI 118 Query: 102 PKKVRSLALRHALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDL 148 KK + +A++ ++ ++ +VID + KTK + A+ L Sbjct: 119 NKKEKRMAIKMGIAASANIKEVSKFHNLGGLKELPIVIDGNLETLKKTKDAIKLLSAIGL 178 Query: 149 SNAL 152 N L Sbjct: 179 ENEL 182 >gi|1171593|emb|CAA64577.1| rpl4 [Plasmodium falciparum] Length = 190 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Query: 48 CSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS 107 +K +S+V ++ K+ VQKG G+AR + + G FGP + K + Sbjct: 53 YKHTKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGP-----FYKENKIISK 107 Query: 108 LALRHALSDKFCSND 122 + R + Sbjct: 108 INYRLIFVYLLINKR 122 >gi|175378485|gb|ACB72434.1| ribosomal protein L4 [Xenopus muelleri] Length = 225 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 50/207 (24%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGRARHSS 77 + I+ V R + SK +E TG ++ +G G R Sbjct: 2 APIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 61 Query: 78 KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI-- 123 + GG+ F P + + A+ +S +I Sbjct: 62 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPE 121 Query: 124 --MVIDNLVSKECKTKY---LVTRFRALDLSNALI-----------------------ID 155 +V+++ V KTK L+ + +A + + Sbjct: 122 VPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCV 181 Query: 156 GCQLDRNFQLAARNIPNINLLPVQGIN 182 + A RNIP I LL V +N Sbjct: 182 IYNENNGLVKAFRNIPGITLLNVSKLN 208 >gi|66732135|gb|AAY52214.1| SL3 [Brugia malayi] Length = 306 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%) Query: 6 VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYT 60 V N E +F + I++ V KR + S + +E T Sbjct: 127 VYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWGT 186 Query: 61 GS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS 115 G ++ +G G R + GG+ F P + + A+ A + Sbjct: 187 GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSART 246 Query: 116 DKF 118 + Sbjct: 247 SRL 249 >gi|118430943|ref|NP_147063.2| 50S ribosomal protein L4P [Aeropyrum pernix K1] gi|150421649|sp|Q9YFM1|RL4_AERPE RecName: Full=50S ribosomal protein L4P gi|116062269|dbj|BAA79140.2| 50S ribosomal protein L4P [Aeropyrum pernix K1] Length = 272 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 85/258 (32%), Gaps = 59/258 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT-GS 62 + V + G +K + + IF ++ ++ R + + KGR +A S Sbjct: 16 VPVYDERGGEKDSVVL-PQIFRFPVRKDLIRRAFLSEFTARLQ----PKGRDPMAGKRTS 70 Query: 63 KMYVQKGTGRARH----SSKSVSQF---RGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114 + + G G AR S + RGG A P + + KK + LA A+ Sbjct: 71 AVSLGVGRGVARVPRIKGSLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAI 130 Query: 115 SDKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------ 143 S + + +V+D+ V + T Sbjct: 131 SATSREDLVRQRGHRFSAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKR 190 Query: 144 ----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCS 190 R + +++ LA + +P ++++ ++V + Sbjct: 191 YNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPG 250 Query: 191 KL-VLSKSAIEALEDRFK 207 +L + + A++ L RF+ Sbjct: 251 RLTIYTTEALKLLSRRFE 268 >gi|326524301|dbj|BAK00534.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 395 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 56/237 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGR 72 +F + I+ V + +R + + +E TG ++ G G Sbjct: 26 PAVFTAPIRPDIVHFVHTSMAKNRRQPYAVKENAGHQHSAESWGTGRAVARIPRVSGGGT 85 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCS 120 +R + G+ F P + + A+ L+ Sbjct: 86 SRAGQGAFGNMCRKGRMFAPTKIWRRWHRPINTNQKRYAVASAIAASALPSLVLARGHRV 145 Query: 121 NDI----MVIDNLVSKECKTKYLVTRFRALDL----------------SNAL-------- 152 + +V+ N V KTK V + L L Sbjct: 146 EAVPEIPLVVPNSVESVNKTKNAVALLKTLGALADVEHARDSKKIRAGKGKLRGRRHVAR 205 Query: 153 ---IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKLVL-SKSAIEAL 202 ++ + D A RN+P + L V+ +N+ + + ++ +KSA E L Sbjct: 206 RGPLVVFNE-DHGISQAFRNLPGVELCQVERLNLLQLAPGAHLGRFIIWTKSAFERL 261 >gi|116789694|gb|ABK25345.1| unknown [Picea sitchensis] Length = 406 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 79/258 (30%), Gaps = 60/258 (23%) Query: 4 LSVRNLD--GEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 +SV N++ G + G ++ D+ + I++ V + KR + SK + Sbjct: 11 VSVLNVESEGAEAGNDAIPLPDVLKACIRPDIVSFVHANMAKNKRQPYAVSKKAGHQTSA 70 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A+ Sbjct: 71 ESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAV 130 Query: 111 RH--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 AL + I +V+ + V KT + + + Sbjct: 131 VSALAASAIPAL-VMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKA 189 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 +I A RNIP + + V +N+ + Sbjct: 190 KKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAP 249 Query: 189 CSKL----VLSKSAIEAL 202 L + +KSA E L Sbjct: 250 GGHLGRFIIWTKSAFEKL 267 >gi|72387341|ref|XP_844095.1| 60S ribosomal protein L4 [Trypanosoma brucei] gi|62360254|gb|AAX80672.1| 60S ribosomal protein L4 [Trypanosoma brucei] gi|70800627|gb|AAZ10536.1| 60S ribosomal protein L4 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 374 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55 +SV + + + G S+ +F + ++ V + R + K + Sbjct: 5 PSVSVYSASEDKVVGTCSL-PAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSA 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G + + + GG+ F P + + A+ Sbjct: 64 ESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAV 123 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-LSNALIID 155 AL+ + I +V+++ V KTK +T + + + + ++ Sbjct: 124 VSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVN 183 Query: 156 GCQ------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D A RNI ++L V +N+ + Sbjct: 184 DSRQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGH 243 Query: 192 L----VLSKSAIEALEDRF 206 + + +KSA E L+ F Sbjct: 244 VGRFIIWTKSAFEKLDKIF 262 >gi|323349506|gb|EGA83730.1| Rpl4bp [Saccharomyces cerevisiae Lalvin QA23] Length = 362 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 262 >gi|6319505|ref|NP_009587.1| Rpl4ap [Saccharomyces cerevisiae S288c] gi|585880|sp|P10664|RL4A_YEAST RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2; AltName: Full=RP2; AltName: Full=YL2 gi|313103740|pdb|3IZC|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome gi|315113348|pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome gi|315113529|pdb|3O58|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. gi|315113574|pdb|3O5H|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit. gi|498759|emb|CAA53687.1| ribosomal protein L2B [Saccharomyces cerevisiae] gi|536244|emb|CAA84973.1| RPL2A [Saccharomyces cerevisiae] gi|151946423|gb|EDN64645.1| ribosomal protein L4A [Saccharomyces cerevisiae YJM789] gi|256269011|gb|EEU04353.1| Rpl4ap [Saccharomyces cerevisiae JAY291] gi|285810367|tpg|DAA07152.1| TPA: Rpl4ap [Saccharomyces cerevisiae S288c] gi|290878048|emb|CBK39107.1| Rpl4ap [Saccharomyces cerevisiae EC1118] gi|323305579|gb|EGA59320.1| Rpl4bp [Saccharomyces cerevisiae FostersB] gi|323306083|gb|EGA59817.1| Rpl4ap [Saccharomyces cerevisiae FostersB] gi|323334261|gb|EGA75643.1| Rpl4bp [Saccharomyces cerevisiae AWRI796] gi|323334523|gb|EGA75897.1| Rpl4ap [Saccharomyces cerevisiae AWRI796] gi|323338370|gb|EGA79597.1| Rpl4ap [Saccharomyces cerevisiae Vin13] gi|323349673|gb|EGA83888.1| Rpl4ap [Saccharomyces cerevisiae Lalvin QA23] gi|323356302|gb|EGA88106.1| Rpl4ap [Saccharomyces cerevisiae VL3] gi|1587588|prf||2206497L ribosomal protein L2B Length = 362 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 262 >gi|323355793|gb|EGA87607.1| Rpl4bp [Saccharomyces cerevisiae VL3] Length = 362 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 262 >gi|148905730|gb|ABR16029.1| unknown [Picea sitchensis] Length = 406 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 60/258 (23%) Query: 4 LSVRNLD--GEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55 +SV+N++ G + G +V D+ + I+ V + KR + SK + Sbjct: 11 VSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSA 70 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G R + GG+ F P + + A+ Sbjct: 71 ESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAV 130 Query: 111 RH--------ALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 AL + I +V+ + V KT + + + Sbjct: 131 VSALAASAIPAL-VMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKA 189 Query: 149 --------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188 +I A RNIP + + V +N+ + Sbjct: 190 KKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAP 249 Query: 189 CSKL----VLSKSAIEAL 202 L + +KSA E L Sbjct: 250 GGHLGRFIIWTKSAFEKL 267 >gi|6320215|ref|NP_010295.1| Rpl4bp [Saccharomyces cerevisiae S288c] gi|1350714|sp|P49626|RL4B_YEAST RecName: Full=60S ribosomal protein L4-B; AltName: Full=L2; AltName: Full=RP2; AltName: Full=YL2 gi|270346345|pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome gi|270346360|pdb|2WWA|H Chain H, Cryo-Em Structures Of Idle Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome gi|270346375|pdb|2WWB|H Chain H, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome gi|642817|emb|CAA88072.1| Rlp2bp [Saccharomyces cerevisiae] gi|1216219|emb|CAA65204.1| 60S ribosomal protein [Saccharomyces cerevisiae] gi|1431432|emb|CAA98832.1| RPL4B [Saccharomyces cerevisiae] gi|45271030|gb|AAS56896.1| YDR012W [Saccharomyces cerevisiae] gi|151942001|gb|EDN60357.1| ribosomal protein L4B [Saccharomyces cerevisiae YJM789] gi|190405011|gb|EDV08278.1| ribosomal protein L4B [Saccharomyces cerevisiae RM11-1a] gi|259145256|emb|CAY78520.1| Rpl4bp [Saccharomyces cerevisiae EC1118] gi|285811034|tpg|DAA11858.1| TPA: Rpl4bp [Saccharomyces cerevisiae S288c] Length = 362 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 262 >gi|224138574|ref|XP_002322848.1| predicted protein [Populus trichocarpa] gi|222867478|gb|EEF04609.1| predicted protein [Populus trichocarpa] Length = 407 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 59/243 (24%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + SK +E TG ++ G G Sbjct: 31 PDVMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGT 90 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---------HALSDK---- 117 R + GG+ F P + + A+ + + Sbjct: 91 HRAGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRV 150 Query: 118 --FCSNDIMVIDNLVSKECKTKYLVTRFRALD---------------------------- 147 +++ D+ S E KT + + + Sbjct: 151 ESVPEMPLIISDSAESIE-KTSTAIKVLKEIGAFPDAEKAKDSHAIRPGKGKMRNRRYIS 209 Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALE 203 LI+ G + + A RNIP + + V+ +N+ + L V+ +KSAIE L+ Sbjct: 210 RKGPLIVYGTEGAKMV-KAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAIEKLD 268 Query: 204 DRF 206 + Sbjct: 269 SIY 271 >gi|49258842|pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 361 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 80/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ V + KR + SE A Sbjct: 3 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 58 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 59 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 112 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 113 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 172 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 173 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 231 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 232 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 261 >gi|183212279|gb|ACC54802.1| ribosomal protein L4 [Xenopus borealis] Length = 318 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 72/235 (30%), Gaps = 54/235 (22%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGRARHSS 77 + I+ V R + SK +E TG ++ +G G R Sbjct: 2 APIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 61 Query: 78 KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI-- 123 + GG+ F P + + A+ +S +I Sbjct: 62 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPE 121 Query: 124 --MVIDNLVSKECKTKY---LVTRFRALDLSNALI-----------------------ID 155 +V+++ V KTK L+ + +A + + Sbjct: 122 VPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCV 181 Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 + A RNIP I LL V +N+ + + + ++SA L+D + Sbjct: 182 IYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLY 236 >gi|84468264|dbj|BAE71215.1| putative 60S ribosomal protein L1 [Trifolium pratense] gi|84468330|dbj|BAE71248.1| putative 60S ribosomal protein L1 [Trifolium pratense] Length = 406 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 63/245 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 30 PDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVAGGGT 89 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P + + A+ A++ + I Sbjct: 90 HRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRI 149 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +V+ + KTK + + + Sbjct: 150 EAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISR 209 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLSKSAIEA 201 LI+ G + A RNIP + + V+ +N +L+ +V +KSA E Sbjct: 210 KGPLIVYGTDGAKAV-KAFRNIPGVEIANVERLN---LLKLAPGGHLGRFVVWTKSAFEK 265 Query: 202 LEDRF 206 L+ + Sbjct: 266 LDSIY 270 >gi|330370655|ref|YP_004376201.1| RNA-dependent RNA polymerase [Hardenbergia virus A] gi|327554169|gb|AEB00587.1| RNA-dependent RNA polymerase [Hardenbergia virus A] Length = 2225 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 69 GTGRARH-SSKSVSQFRGGGKAFGPVPI-----IGVHAL---PKKVRSLALRHALSDKFC 119 G+G++R+ + F+ GG+A P + K +R + AL+ + Sbjct: 863 GSGKSRNIQNYINDNFKNGGRATIISPRNELLKDWSSKIKCNNKHIRMMTYEKALTVSYS 922 Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169 +++++VID + L++ + I ++ +N +L+ RN Sbjct: 923 NDELVVIDEIGLLPPGYISLLSLI--------VRIKTEEISQNVRLSKRN 964 >gi|194387084|dbj|BAG59908.1| unnamed protein product [Homo sapiens] Length = 414 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 10/118 (8%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111 TG ++ +G G R + GG+ F P + + A+ Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAIC 125 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 D A RNIP I LL V +N+ + + + ++SA L++ + Sbjct: 222 DNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 272 >gi|84468414|dbj|BAE71290.1| putative 60S ribosomal protein L1 [Trifolium pratense] Length = 406 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 63/245 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 30 PDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVAGGGT 89 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P + + A+ A++ + I Sbjct: 90 HRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRI 149 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +V+ + KTK + + + Sbjct: 150 EAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISR 209 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLSKSAIEA 201 LI+ G + A RNIP + + V+ +N +L+ +V +KSA E Sbjct: 210 KGPLIVYGTDGAKAV-KAFRNIPGVEIANVERLN---LLKLAPGGHLGRFVVWTKSAFEK 265 Query: 202 LEDRF 206 L+ + Sbjct: 266 LDSIY 270 >gi|194389956|dbj|BAG60494.1| unnamed protein product [Homo sapiens] Length = 151 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 12/110 (10%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + GE G +++ +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTL-PAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALP 102 TG ++ +G G R + GG+ F P + Sbjct: 67 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVN 116 >gi|1350685|sp|P49669|RL4_TRYBB RecName: Full=60S ribosomal protein L4; AltName: Full=L1 gi|1015931|emb|CAA91141.1| ribosomal protein L1 [Trypanosoma brucei] Length = 374 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55 +SV + + + G S+ +F + ++ V + R + K + Sbjct: 5 PSVSVYSASEDKVVGTCSL-PAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHST 63 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 E TG ++ G G + + + GG+ F P + + A+ Sbjct: 64 ESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAV 123 Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD-LSNALIID 155 AL+ + I +V+++ V KTK +T + + + + ++ Sbjct: 124 VSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVN 183 Query: 156 GCQ------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191 + D A RNI ++L V +N+ + Sbjct: 184 DSRQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGH 243 Query: 192 L----VLSKSAIEALEDRF 206 + + +KSA E L+ F Sbjct: 244 VGRFIIWTKSAFEKLDKIF 262 >gi|323309497|gb|EGA62708.1| Rpl4bp [Saccharomyces cerevisiae FostersO] Length = 362 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 76/270 (28%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V L GE +F+ + I+ V + KR + SE A Sbjct: 4 PQVTVHXLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHAL 101 T ++ + GTGRA + + GG+ F P + Sbjct: 60 TSAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKV 113 Query: 102 PKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD 147 + A L+ I +V+ + KTK V +A+ Sbjct: 114 NHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVG 173 Query: 148 L---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180 ++ + D A RN+P + V Sbjct: 174 AHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVAS 232 Query: 181 INVYDI---LRCSKLVL-SKSAIEALEDRF 206 +N+ + + V+ +++A L+ + Sbjct: 233 LNLLQLAPGAHLGRFVIWTEAAFTKLDQVW 262 >gi|94733360|emb|CAK04710.1| ribosomal protein L4 [Danio rerio] Length = 99 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58 +SV + GE G V +F + I+ V KR + S + +E Sbjct: 8 ISVYSEKGETSGKNVVMPAVFRAPIRPDIVNFVHTNMRKNKRQPYAVSELAGHQTSAESW 67 Query: 59 YTGS---KMYVQKGTGRARHS 76 TG ++ +G G R Sbjct: 68 GTGRAVARIPRVRGGGTHRSG 88 >gi|71017629|ref|XP_759045.1| hypothetical protein UM02898.1 [Ustilago maydis 521] gi|46098714|gb|EAK83947.1| hypothetical protein UM02898.1 [Ustilago maydis 521] Length = 333 Score = 44.3 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 54/218 (24%) Query: 43 RKRIGCS-KSK----GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP 94 KR + +K +E TG ++ G G R + GG F P Sbjct: 16 NKRQPYAVSTKAGHQTSAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMVRGGHMFAPTK 75 Query: 95 --IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKY 138 + + A L+ ++ +V+ + KTK Sbjct: 76 LWRRWFIKTNQNQKRYATASALAATAVPSLVLARGHRVEELEEIPLVVADAAESLTKTKE 135 Query: 139 LVTRFRALDLSNALI--------------------------IDGCQLDRNFQLAARNIPN 172 + ++++ N ++ + D A RN+P Sbjct: 136 AIALLKSVNAYNDVVKVSNSRKIRAGVGKLRNRRHTQRRGPLVIYNKDAGIVKAFRNVPG 195 Query: 173 INLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206 + L V+ +N+ + ++ ++SA L++ F Sbjct: 196 VELCSVERLNLLQLAPGGHLGRFVIFTQSAFGRLDEVF 233 >gi|281500834|pdb|3JYW|D Chain D, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 257 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 79/268 (29%), Gaps = 76/268 (28%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--T 60 +++V +L GE +F+ + I+ V + KR + SE A T Sbjct: 1 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAV----SEKAGHQT 56 Query: 61 GSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHALP 102 ++ + GTGRA + + GG+ F P + Sbjct: 57 SAESW---GTGRA---VARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVN 110 Query: 103 KKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL 148 + A L+ I +V+ + KTK V +A+ Sbjct: 111 HNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGA 170 Query: 149 ---------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181 ++ + D A RN+P + V + Sbjct: 171 HSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASL 229 Query: 182 NVYDI---LRCSKLVL-SKSAIEALEDR 205 N+ + + V+ +++A L+ Sbjct: 230 NLLQLAPGAHLGRFVIWTEAAFTKLDQV 257 >gi|330040445|ref|XP_003239916.1| 60S ribosomal protein L1 [Cryptomonas paramecium] gi|327206842|gb|AEA39018.1| 60S ribosomal protein L1 [Cryptomonas paramecium] Length = 304 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 46/226 (20%) Query: 2 IELSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRS 55 +++++ + + + +F K + I+ V +R + + + Sbjct: 6 VKVNIYSCQNRTKVDQVHLPN-VFISKIKPNIVNFVHSNMRMNRRQPHSVNNKAGTMTSA 64 Query: 56 EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110 TG ++ G+G + + GG+ FGP H + K R AL Sbjct: 65 SSWGTGRALARVPRISGSGTHKSGQGATVNSCRGGRIFGPNSIWRKWHHKINKNQRKQAL 124 Query: 111 RHA-----LSDKFCS-----NDI----MVIDNLVSKECKTKYLVTRFRALDLS------- 149 A +S + N+I +V++N V KTK ++ + Sbjct: 125 ESAIAATGISALIAAHGYNLNNIPEIPLVVENSVELLKKTKNAQKVLSSIGIRKNNKLNC 184 Query: 150 ---------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 L+I + RNI ++ + +N++ + Sbjct: 185 KKKTYSSSCKKLLIIYQKN----AKCFRNIFDVETCRITTLNLFKL 226 >gi|224068640|ref|XP_002326163.1| predicted protein [Populus trichocarpa] gi|118486971|gb|ABK95318.1| unknown [Populus trichocarpa] gi|222833356|gb|EEE71833.1| predicted protein [Populus trichocarpa] Length = 408 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 82/262 (31%), Gaps = 66/262 (25%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAY 59 S+ ++ + +++ + + + I+ V S R + SK +E Sbjct: 17 SLNDMATDSVTTVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWG 75 Query: 60 TGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR--- 111 TG ++ G G R + GG+ F P + + A+ Sbjct: 76 TGRAVSRIPRVSGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQKRYAVVSAI 135 Query: 112 ------HALSDK------FCSNDIMVIDNLVSKECKTKYLVTRFRALD------------ 147 + + +++ D+ S E KT + + + Sbjct: 136 AASAIPSLVMARGHRVESVPEMPLVISDSAESIE-KTSTAIKVLKEIGAYPDAEKAKDSQ 194 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 LI+ G + A RNIP + + V+ +N +LR Sbjct: 195 AIRAGKGKMRNRRYISRKGPLIVYGTEG-AKLVKAFRNIPGVEVANVERLN---LLRLAP 250 Query: 189 ----CSKLVLSKSAIEALEDRF 206 ++ +KSAIE L+ + Sbjct: 251 GGHLGRFVIWTKSAIEKLDSIY 272 >gi|224144519|ref|XP_002336155.1| predicted protein [Populus trichocarpa] gi|222874555|gb|EEF11686.1| predicted protein [Populus trichocarpa] Length = 408 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 82/262 (31%), Gaps = 66/262 (25%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAY 59 S+ ++ + +++ + + + I+ V S R + SK +E Sbjct: 17 SLNDMATDSVTTVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWG 75 Query: 60 TGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR--- 111 TG ++ G G R + GG+ F P + + A+ Sbjct: 76 TGRAVSRIPRVSGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQKRYAVVSAI 135 Query: 112 ------HALSDK------FCSNDIMVIDNLVSKECKTKYLVTRFRALD------------ 147 + + +++ D+ S E KT + + + Sbjct: 136 AASAIPSLVMARGHRVESVPEMPLVISDSAESIE-KTSTAIKVLKEIGAYPDAEKAKDSQ 194 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188 LI+ G + A RNIP + + V+ +N +LR Sbjct: 195 AIRAGKGKMRNRRYISRKGPLIVYGTEG-AKLVKAFRNIPGVEVANVERLN---LLRLAP 250 Query: 189 ----CSKLVLSKSAIEALEDRF 206 ++ +KSAIE L+ + Sbjct: 251 GGHLGRFVIWTKSAIEKLDSIY 272 >gi|222064025|emb|CAQ86675.1| putative ribosomal protein conserved domain L4/L1 family [Histomonas meleagridis] Length = 275 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALEDRFK 207 + D A RNIP + + V +++Y + + +LV+ ++SA +AL++ ++ Sbjct: 61 LVVYNKDEGVVKAFRNIPGVEIQSVHRLSIYQLAPAGKMGRLVIWTESAFKALDEIYE 118 >gi|269866082|ref|XP_002652149.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220063065|gb|EED41907.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 288 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 61/203 (30%) Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 29 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 88 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL------- 148 ++ + + I +V+ + +S KT+ + ++L Sbjct: 89 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 148 Query: 149 --------------------SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDIL 187 L+I N L+A NI + L V +N +L Sbjct: 149 RESKTITCGKGKFRGRRYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LL 201 Query: 188 R------CSKLVL-SKSAIEALE 203 R +L+L ++SA + LE Sbjct: 202 RLCPGGHLGRLILWTESAFKKLE 224 >gi|217071858|gb|ACJ84289.1| unknown [Medicago truncatula] Length = 408 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 74/241 (30%), Gaps = 55/241 (22%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 32 PDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGT 91 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P + + A+ A++ + I Sbjct: 92 HRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRI 151 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD-------LSNAL----------------- 152 +V+ + KTK + + + ++L Sbjct: 152 ETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYISR 211 Query: 153 ---IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALEDR 205 +I A RNIP + + V+ +N+ + L V+ +KSA E L+ Sbjct: 212 KGPLIVYGTDGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSI 271 Query: 206 F 206 + Sbjct: 272 Y 272 >gi|302416655|ref|XP_003006159.1| 60S ribosomal protein L4 [Verticillium albo-atrum VaMs.102] gi|261355575|gb|EEY18003.1| 60S ribosomal protein L4 [Verticillium albo-atrum VaMs.102] Length = 352 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 10/117 (8%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +F+ + I+ V + + KR + S + +E Sbjct: 5 PTVTIIGGDGKATGNTHTWPVVFSSPIRTDIVQDVHKGLAKNKRQPYAVSEKAGEQTSAE 64 Query: 57 VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL 108 TG ++ G G R + G+ F P + + Sbjct: 65 SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHVKVNLGQKRY 121 >gi|225435782|ref|XP_002285741.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 405 Score = 42.7 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 63/245 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 29 PDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 88 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P + + A+ A++ + I Sbjct: 89 HRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVMARGHRI 148 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +VI + KT + + + Sbjct: 149 ESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKAKDSHGIRPGKGKMRNRRYISR 208 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLSKSAIEA 201 LI+ G + A RNIP + + V+ +N +L+ ++ +KSAIE Sbjct: 209 KGPLIVYGTEG-AKLVKAFRNIPGVEVANVERLN---LLKLAPGGHLGRFIIWTKSAIEK 264 Query: 202 LEDRF 206 ++ + Sbjct: 265 VDSIY 269 >gi|225439761|ref|XP_002274975.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 406 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 72/242 (29%), Gaps = 57/242 (23%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 D+ + I+ V S R + S + +E TG ++ G G Sbjct: 30 PDVMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 89 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P + + A+ A++ + I Sbjct: 90 HRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRI 149 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +VI + KT + + + Sbjct: 150 ESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKAKDSHAIRPGKGKMRNRRYISR 209 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALED 204 LI+ G + A RNIP + + V +N+ + L V+ +KSA E L+ Sbjct: 210 KGPLIVYGTEG-AKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSAFEKLDS 268 Query: 205 RF 206 + Sbjct: 269 IY 270 >gi|323338838|gb|EGA80053.1| Rpl4ap [Saccharomyces cerevisiae Vin13] Length = 111 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V +L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS 62 TG Sbjct: 64 SWGTGR 69 >gi|145490309|ref|XP_001431155.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|145545624|ref|XP_001458496.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830156|emb|CAI39016.1| telomerase, putative [Paramecium tetraurelia] gi|74830167|emb|CAI39018.1| ribosomal protein L4, putative [Paramecium tetraurelia] gi|124398258|emb|CAK63757.1| unnamed protein product [Paramecium tetraurelia] gi|124426316|emb|CAK91099.1| unnamed protein product [Paramecium tetraurelia] Length = 406 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 61/218 (27%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS- 79 +F + I++ V + +R ++ + ++ GTGRA Sbjct: 26 PAVFQTPIRPDIVSFVHTNIAKNRRQA-HAVNPQAGMQHSAESW----GTGRAVARIPRV 80 Query: 80 --VSQFRGGGKAFGPVPIIGVHALPKKV-RSLALRHALSDK------------------F 118 R G AFG G +LP KV R R + K Sbjct: 81 SGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATGIVPLVLA 140 Query: 119 CSNDI-------MVIDNLVSKECKTKYLVTRFRALD------------------------ 147 + I +V+++ + KT + + Sbjct: 141 RGHRISQVPQIPLVVEDKIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGK 200 Query: 148 ---LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182 + ++ + A RN+P + ++ V +N Sbjct: 201 KYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLN 238 >gi|323310204|gb|EGA63396.1| Rpl4ap [Saccharomyces cerevisiae FostersO] Length = 154 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V +L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVTVHSLTGEATANALPXPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS 62 TG Sbjct: 64 SWGTGR 69 >gi|226858987|gb|ACO87994.1| P450 [Nilaparvata lugens] Length = 497 Score = 42.3 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 127 DNLVSKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 D+L +YL RA +S + + RN A + +N Y Sbjct: 395 DSLEIPTEDPRYLEDLVSERAWGVSVPFVDSVDIMPRNITTATPFGHGNRRCMGEILNKY 454 Query: 185 DILRCSKLVLSKSAIEALEDR 205 +L+ LVL+ SA+E +E + Sbjct: 455 SMLKHEALVLTVSAVEEIEKK 475 >gi|298712581|emb|CBJ33281.1| conserved unknown protein [Ectocarpus siliculosus] Length = 379 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 77/257 (29%), Gaps = 55/257 (21%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58 +SV + +G + ++ +F + + ++ V + R + SK +E Sbjct: 7 VSVFSKEGVAQESTTL-PAVFTVPIRPDVVNFVHTNMAKNHRQPYAVSKRAGHQTSAESW 65 Query: 59 YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL----- 108 TG ++ +G G R + GG+ F P + + Sbjct: 66 GTGRAVSRIPRVQGGGTQRAGQGAFGNMCRGGRMFSPTKIWRRWHRNVNVNQKRYAVASA 125 Query: 109 -------ALRHALSDKFCSN---DIMVIDNL--------------------VSKECKTKY 138 AL A + ++V +L ++ K Sbjct: 126 LAATAVPALVMARGHRVEEVPELPLVVDTSLETCSKTAAAMATLTALGAAAEVEKAKDSK 185 Query: 139 LVTRFRALDLSNALI-----IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192 + + + + + A RN+P + V +N+ + + Sbjct: 186 KIRAGKGKMRNRRYVMRRGPLVIYDKSEGISRAFRNLPGVETACVDRLNLLTLAPGGHIG 245 Query: 193 ---VLSKSAIEALEDRF 206 V +++A + L+ + Sbjct: 246 RFCVWTQAAFDKLDSIY 262 >gi|118576053|ref|YP_875796.1| ribosomal protein L4 [Cenarchaeum symbiosum A] gi|118194574|gb|ABK77492.1| ribosomal protein L4 [Cenarchaeum symbiosum A] Length = 271 Score = 41.6 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 65/260 (25%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GCSKSKGRSEVAY 59 ++ +V LDG I++ +F ++ ++ + G + G +V+ Sbjct: 1 MKAAVLGLDGSKGKEITLPP-VFGTPYRRDLIKKAYTILDTHHFQPKGTHPTAG-MDVSA 58 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSL---------- 108 G G+AR + R G+A G A P KV+ + Sbjct: 59 DSLNPPT--GHGQARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEK 116 Query: 109 --ALRHALSDKFC----SNDIMVIDNLVSK---------ECKTKYLVTRFRALDL----- 148 AL A++ + +ID + K + AL L Sbjct: 117 KLALCSAIAATASKSTVAGRGHIIDGIELPIVISDDIESVSKASEVRKILSALGLFADVN 176 Query: 149 ----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + L + G A P + P + ++V D+ Sbjct: 177 RLEGRKPRTGKSALRGRPKKIGKSILFVVGADGP--VIRAVGGFPGVTARPARDLSVLDL 234 Query: 187 ---LRCSKL-VLSKSAIEAL 202 ++L V SK+AIE+L Sbjct: 235 APGAEPARLTVYSKAAIESL 254 >gi|296204120|ref|XP_002749190.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus] Length = 120 Score = 41.6 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 4 LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57 +SV + GE G +++ +F + I+ V R + S + +E Sbjct: 8 ISVYSEKGESSGKNVTL-PAVFKAPIRPDIVNFVHTNLCKNNRQPYAVSELAGHQTSAES 66 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93 TG ++ +G G R + GG+ F P Sbjct: 67 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 105 >gi|198425705|ref|XP_002123535.1| PREDICTED: similar to ribosomal protein L4 [Ciona intestinalis] Length = 309 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 54/208 (25%) Query: 50 KSKGRSEVAYTGSKMYVQK--GTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105 K+ R E K ++ G G R + GG+ + P Sbjct: 9 KTGKRGEKRGKEGKEGKRENRGGGTHRSGQAAFGNMCRGGRMYAPTKTWRRWHRRCNINQ 68 Query: 106 RSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKY---LVTRFRALDL 148 R A+ AL+ + I +V+++ V + KTK L+ + +A D Sbjct: 69 RRFAVCSALAASSLPALVMSKGHKIDQTPEIPLVVEDKVQQFKKTKDAVVLLKKLKAWDD 128 Query: 149 SNALI-----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 ++ D A RNIP I L+ V +N Sbjct: 129 IKKVMKSRKIRAGKGKMRNRRHTMKRGPCIIYDKDEGISKAFRNIPGITLISVDRLN--- 185 Query: 186 ILR-------CSKLVLSKSAIEALEDRF 206 +L+ L+ ++SA++ L+ + Sbjct: 186 LLKIAPGGHVGRFLIWTQSALKRLDGIY 213 >gi|172413|gb|AAA34974.1| ribosomal protein L2 [Saccharomyces cerevisiae] Length = 362 Score = 41.2 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 82/267 (30%), Gaps = 70/267 (26%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY-- 59 +++V +L GE +F+ + I+ + + KR + SE A Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTLFTSVNKNKRQAYAV----SEKAGHQ 59 Query: 60 TGSKMYVQKGTGRA-----RHSSKSVSQFR--------GGGKAFGPVP--IIGVHALPKK 104 T ++ + GTGRA R + GG+ F P + Sbjct: 60 TSAESW---GTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHN 116 Query: 105 VRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDL-- 148 + A L+ I +V+ + KTK V +A+ Sbjct: 117 EKRYATASAIAATAVASLVLARGHRVETIPEIPLVVSTDLDSIQKTKEAVAALKAVGAHS 176 Query: 149 -------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183 ++ + D A RN+P++ V +N+ Sbjct: 177 DLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPSVETANVASLNL 235 Query: 184 YDILRCSKL---VL-SKSAIEALEDRF 206 + + L V+ +++A L+ + Sbjct: 236 LQLAPSAHLGRFVIWTEAAFTKLDQVW 262 >gi|67619485|ref|XP_667650.1| 60S ribosomal protein-like [Cryptosporidium hominis TU502] gi|54658805|gb|EAL37421.1| 60S ribosomal protein-like [Cryptosporidium hominis] Length = 212 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 11/61 (18%) Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR------CSKL-VLSKSAIEALEDR 205 ++ + D A RNI ++ V+ +N +LR +L + +K AI+ L++ Sbjct: 29 LVIYAE-DNGIVKAMRNIKGVDTCSVERLN---LLRLAPGGTFGRLTIFTKGAIKRLQEI 84 Query: 206 F 206 + Sbjct: 85 Y 85 >gi|124782963|gb|ABN14894.1| ribosomal protein L4 [Taenia asiatica] Length = 265 Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 63/211 (29%), Gaps = 50/211 (23%) Query: 26 LKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGRARHSS 77 + +L V R + S + +E TG ++ +G G R Sbjct: 1 APMRSDVLNFVHDSLRKNSRQPYAVSSKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 60 Query: 78 KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI----- 123 + GG + P + + R A+ A++ + + Sbjct: 61 GAFGNMCRGGHMYAPTKVWRRWHRRVNVQQRRFAMCSAIAATGVPALVMARGHRVDKIPE 120 Query: 124 --MVIDNLVSKECKTKYLVTRFRAL----DLSNAL----------------------IID 155 +V+ V K KTK V + L D+ I Sbjct: 121 LPLVVSGNVEKIKKTKEAVKVLKKLRAWSDIQKVYQSKRNRAGRGKMRNRRHIMKRGPII 180 Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 + D A RNIP I LL V+ +N+ + Sbjct: 181 VYKKDDGITRAFRNIPGITLLNVKYLNILKL 211 >gi|322821554|gb|EFZ27842.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi] Length = 374 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 79/267 (29%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASEDKVVGTCPL-PAVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 ESW---------GTGRA---VARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ V KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLK 171 Query: 145 ALD-LSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + D A RNI ++L V Sbjct: 172 AIGAVDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVN 231 Query: 180 GINVYDILRCSKL---VL-SKSAIEAL 202 +N+ + + V+ +K A E L Sbjct: 232 ALNLLHLAPGGHVGRFVIWTKGAFEKL 258 >gi|207346857|gb|EDZ73223.1| YDR012Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 232 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V +L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS 62 TG Sbjct: 64 SWGTGR 69 >gi|553139|gb|AAA34975.1| ribosomal protein L2 [Saccharomyces cerevisiae] Length = 200 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++V +L GE +F+ + I+ V + KR + S + +E Sbjct: 4 PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63 Query: 57 VAYTGS 62 TG Sbjct: 64 SWGTGR 69 >gi|196007616|ref|XP_002113674.1| expressed hypothetical protein [Trichoplax adhaerens] gi|190584078|gb|EDV24148.1| expressed hypothetical protein [Trichoplax adhaerens] Length = 349 Score = 40.8 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 54/218 (24%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCS-KSK----GRSEVAYTGS---KMYVQKGTGR 72 + + ++ V + KR + +K +E TG ++ +G G Sbjct: 2 PAVLKAPIRPDLVQFVHTNMAKNKRQPYAVSTKAGHQTSAESWGTGRAVARIPRVRGGGT 61 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL----------ALRHALSDKFCS 120 R + GG+ F P R ++ Sbjct: 62 HRSGQAAYGNMCRGGRMFAPTRVWRRWTRKSNLSQRRYACASALAASSLPALVMARGHRI 121 Query: 121 NDI----MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +I +V+ + V KT V + ++ Sbjct: 122 ENIQEVPLVVSDSVESITKTSAAVAFLKRVNAYQDVEKVKASRTLRTGKGKLRNRRYVQR 181 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 LII D A RN+P + L + +N+ + Sbjct: 182 RGPLII--YNADNGIVKAFRNVPGVELAQISRLNLLSL 217 >gi|71403432|ref|XP_804516.1| 60S ribosomal protein L4 [Trypanosoma cruzi strain CL Brener] gi|70867532|gb|EAN82665.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi] Length = 374 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 79/267 (29%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASEDKVVGTCPL-PAVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 ESW---------GTGRA---VARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ V KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLK 171 Query: 145 ALD-LSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + D A RNI ++L V Sbjct: 172 AIGAVDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVN 231 Query: 180 GINVYDILRCSK----LVLSKSAIEAL 202 +N+ + +V +K A E L Sbjct: 232 ALNLLHLAPGGHVGRFVVWTKGAFEKL 258 >gi|233770157|gb|ACQ91145.1| cytochrome P450 [Nilaparvata lugens] Length = 508 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205 +N Y +L+ LVL+ SA+E +E + Sbjct: 450 LNKYSMLKHEALVLTVSAVEEIEKK 474 >gi|77999245|gb|ABB16969.1| unknown [Solanum tuberosum] Length = 405 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 72/245 (29%), Gaps = 63/245 (25%) Query: 21 EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGR 72 + + ++ V S R + S + +E TG ++ G G Sbjct: 28 PAVMKAPIRPDVVTYVHSNISKNARQPYAVSRKAGHQTSAESWGTGRAVSRILGCSGGGT 87 Query: 73 ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123 R + GG+ F P +P + A+ A++ + I Sbjct: 88 HRAGQGAFGNMCRGGRMFAPTQIWRRWHRKIPVNQKRYAVASAIAASSVPSLVLARGHRI 147 Query: 124 -------MVIDNLVSKECKTKYLVTRFRALD----------------------------L 148 +VI + + KT + + + Sbjct: 148 ESVPELPLVISDSIEGIEKTSNAIKALKQIGAYPDAEKAKDSHAIRQGKGKMRNRRYISR 207 Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLSKSAIEA 201 LI+ G + A RNIP + + V +N +L+ ++ +K A E Sbjct: 208 KGPLIVYGTEG-AKLVKAFRNIPGVEICHVDRLN---LLKLAPGGHLGRFIIWTKCAYEK 263 Query: 202 LEDRF 206 L+ + Sbjct: 264 LDGIY 268 >gi|289919138|gb|ADD21621.1| ribosomal protein L4 [Mya truncata] Length = 172 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 42/160 (26%) Query: 69 GTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHAL------SDKFCS 120 G G R + GG+ F P + R A+ AL S Sbjct: 13 GGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHRRININQRRYAICSALAASAIPSLVMSK 72 Query: 121 NDIM--------VIDNLVSKECKTKYLVTRFRALD-LSNALII----------------- 154 ++ V+ + V + +TK V + L + L + Sbjct: 73 GHMIEEIPEVPLVVSDKVEEYKRTKEAVQLLKKLKAWRDILKVYNSKRFRAGKGKMRNRR 132 Query: 155 --------DGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186 D A RNIP I LL V +N+ + Sbjct: 133 RIQRRGPLIIYNQDNGLTRAFRNIPGITLLNVARLNLVKV 172 >gi|198415679|ref|XP_002127379.1| PREDICTED: similar to ribosomal protein L4, partial [Ciona intestinalis] Length = 78 Score = 39.3 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58 +SV + G G I++ +F + I+ V S R + + +E Sbjct: 8 VSVYSEKGVASGSITL-PAVFKAPIRPDIVNFVHTNISKNHRQAYAVKSIAGEQTSAESW 66 Query: 59 YTGS 62 TG Sbjct: 67 GTGR 70 >gi|322488672|emb|CBZ23919.1| putative ribosomal protein L1a [Leishmania mexicana MHOM/GT/2001/U1103] Length = 434 Score = 39.3 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 79/267 (29%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + G + +F + I+ V + R + S Sbjct: 66 PSVSVYSASSDSVVGTCPL-PAVFTAPIRNDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 124 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 125 HSW---------GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 172 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ + KTK + + Sbjct: 173 RKINLHQKRFAVVSALAASSVPSLVMSRGHKISNVPEVPLVVEDSIQGYEKTKEAMAFLK 232 Query: 145 AL-DLSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + + A RNI ++L V Sbjct: 233 AIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVS 292 Query: 180 GINVYDILRCSKL---VL-SKSAIEAL 202 +N+ + + V+ +KSA E L Sbjct: 293 ALNLLHLAPGGHVGRFVIWTKSAFEQL 319 >gi|238608211|ref|XP_002397173.1| hypothetical protein MPER_02448 [Moniliophthora perniciosa FA553] gi|215471110|gb|EEB98103.1| hypothetical protein MPER_02448 [Moniliophthora perniciosa FA553] Length = 249 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 64/235 (27%) Query: 31 GILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQ 82 ++A+V + + KR + S + +E TG ++ G G R + Sbjct: 2 DVVAQVHKSIAKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTHRSGQAAFGN 61 Query: 83 FRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVI 126 GG+ F P + + R A+ L+ I +VI Sbjct: 62 MCRGGRMFAPTKTWRKWHVKVNQNQRRFAVVSALAASALPSLVLARGHHIEQIEEAPLVI 121 Query: 127 DNLVSKECKTKYLVTRFRAL----------------------------DLSNALIIDGCQ 158 N V KTK VT +AL LI+ Sbjct: 122 SNEVESFKKTKEAVTLLKALHAYADVVKVSNSHKLRAGKGKMRNRRHRQCRGPLIV--YN 179 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDIL------RCSKLVL-SKSAIEALEDRF 206 D A RN+P + L+ V+ + D+L + V+ ++ A L++ F Sbjct: 180 EDDGIVRAFRNLPGVELVNVRRL---DLLQLAPGGHLGRFVIWTEGAFGLLDEVF 231 >gi|332024885|gb|EGI65073.1| 60S ribosomal protein L4 [Acromyrmex echinatior] Length = 364 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 53/206 (25%) Query: 52 KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVR 106 + +E TG ++ +G G R + GG+ F P H + + Sbjct: 7 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHHVNVNQK 66 Query: 107 SLALRHALSD------KFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL----DL 148 AL A++ ++ V+ + + + KTK V R + D+ Sbjct: 67 RYALVSAIAASGVPALVQSKGHLIQEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWNDI 126 Query: 149 SNA------------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 LI+ G D+ + A RNIP ++L+ + +N+ Sbjct: 127 QKVYKSQRFRAGKGKMRNRRRIQRRGPLIVYGQ--DQGIRKAFRNIPGVSLMNINKMNLL 184 Query: 185 DILRCSKL---VL-SKSAIEALEDRF 206 + + V+ +KSA + L+ + Sbjct: 185 KLAPGGHVGRFVIWTKSAFDQLDALY 210 >gi|294882565|ref|XP_002769741.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] gi|294924292|ref|XP_002778799.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] gi|239873490|gb|EER02459.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] gi|239887589|gb|EER10594.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] Length = 393 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 77/259 (29%), Gaps = 59/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK------GRSEV 57 +SV +L G + + +F + ++ V + KR K + Sbjct: 8 VSVYDLSGSSSST-TCAPTVFQAPLRPDLVRSVHSAMAKNKRQA-RGVKFEAGYETAAAS 65 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ G G R + GG F P+ + A+ Sbjct: 66 WGTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGGMFAPLKTWRRWHRKSNLTEKRHAMAS 125 Query: 113 ALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNAL------ 152 A++ + I +V+ V KTK V AL L Sbjct: 126 AIAASALPPLVMARGHRIGEVPELPLVLSQGVESVQKTKDAVAVLEALGAGADLQRVKDS 185 Query: 153 ---------------------IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 ++ + D A RNIP I L V +N+ + Sbjct: 186 KKIRAGAGKMRNRRYVMRRGPLVVYAE-DDGLTKAFRNIPGIELCQVDRLNLLQVAPGGT 244 Query: 189 CSKLVL-SKSAIEALEDRF 206 + ++ ++ A + L+ F Sbjct: 245 FGRFIIWTQPAFDRLQQLF 263 >gi|313240950|emb|CBY33256.1| unnamed protein product [Oikopleura dioica] Length = 257 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 46/167 (27%) Query: 86 GGKAFGPVP--IIGVHALPKKVRSLALRHAL------SDKFCSNDIM--------VIDNL 129 GG+ F P + R A A+ S ++ VID+ Sbjct: 4 GGRMFNPNKTWRNWHRRVNVTQRRYATVSAIAATGIPSLAMAKGHVVNNVPEFPLVIDSS 63 Query: 130 VSKECKTKYLVTRFRALD--------------------------LSNALIIDGCQLDRNF 163 KTK V+ + + + + + D Sbjct: 64 AEALKKTKAAVSVLKKVGAIDDVNRVKETRRFRAGRGKMRNRRRVQKRGPLVVYKNDDGI 123 Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 A RNIP + LLPV +N+ + + + + A +AL++ + Sbjct: 124 VQAMRNIPGVTLLPVDQLNLLKLAPGGHVGRFTIYTSEAFKALDNVY 170 >gi|269863508|ref|XP_002651248.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220064880|gb|EED42809.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 251 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 58/187 (31%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLALRHALSD-------KF 118 KG+G R + + F G+ P P R L ++ + Sbjct: 8 KGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLVTAMGVAASGHADIVEA 67 Query: 119 CSNDI-------MVIDNLVSKECKTKYLVTRFRALDL----------------------- 148 + I +V+ + +S KT+ + ++L Sbjct: 68 RGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKVRESKTITCGKGKFRGR 127 Query: 149 ----SNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDILR------CSKLVL-SK 196 L+I N L+A NI + L V +N +LR +L+L ++ Sbjct: 128 RYSKRTGLLIVHD----NAALSAFSNIEGVELANVNSLN---LLRLCPGGHLGRLILWTE 180 Query: 197 SAIEALE 203 SA + LE Sbjct: 181 SAFKKLE 187 >gi|321437441|gb|ADW83731.1| ribosomal protein L4 [Musa acuminata AAA Group] Length = 301 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 144 RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAI 199 R + LI+ G + + A RNIP +++ V+ +N+ + ++ +KSA Sbjct: 100 RYISRKGPLIVYGTEGSK-IVKAFRNIPGVDVANVERLNLLKLASGGHIGRFIIWTKSAF 158 Query: 200 EALEDRF 206 E L+ F Sbjct: 159 EKLDSVF 165 >gi|225387219|ref|ZP_03756983.1| hypothetical protein CLOSTASPAR_00971 [Clostridium asparagiforme DSM 15981] gi|225046698|gb|EEG56944.1| hypothetical protein CLOSTASPAR_00971 [Clostridium asparagiforme DSM 15981] Length = 146 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 3/105 (2%) Query: 52 KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 KGR + G +AR + G + +P G + K Sbjct: 20 KGRGHASGNGKTAGKGHKGQKARSGATRPGFEGGQMPLYRRLPKRGFTNINSKTIIGINV 79 Query: 112 HALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 AL +KF ++ ++ ++ L+ + V +L+ L + Sbjct: 80 SAL-EKFENDSVVTVETLLESGIVKNPRDGVKILGNGELTKKLTV 123 >gi|89257931|gb|ABD65244.1| ribosomal protein L4 [Stenella coeruleoalba] Length = 316 Score = 37.7 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 58/222 (26%) Query: 41 SWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGP 92 R + S + +E TG ++ +G G R + GG+ F P Sbjct: 9 RKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 68 Query: 93 VP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKT 136 + + A+ +S ++ +V+++ V KT Sbjct: 69 TKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 128 Query: 137 KYLVTRFRALDLSNAL----------------------------IIDGCQLDRNFQLAAR 168 K V + L N + II D A R Sbjct: 129 KEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII--YNEDNGIIKAFR 186 Query: 169 NIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 NIP I LL V +N+ + + + ++SA L++ + Sbjct: 187 NIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 228 >gi|269863846|ref|XP_002651367.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] gi|220064660|gb|EED42689.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348] Length = 216 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 51/175 (29%) Query: 55 SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV--PIIGVHALPKKVRSLA 109 +E TG K+ KG+G R + + F G+ P P R L Sbjct: 29 AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 88 Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSN----- 150 ++ + + I +V+ + +S KT+ + ++L Sbjct: 89 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 148 Query: 151 ----------------------ALIIDGCQLDRNFQLAA-RNIPNINLLPVQGIN 182 AL+I N L+A NI + L V +N Sbjct: 149 RESKTITCGKGKFRGRRYSKQTALLIVHD----NAALSAFSNIEGVELANVNSLN 199 >gi|261327247|emb|CBH10223.1| 60S ribosomal protein L4 [Trypanosoma brucei gambiense DAL972] Length = 374 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 81/267 (30%), Gaps = 71/267 (26%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +SV + + + G S+ +F + ++ V + R + S + ++ Sbjct: 5 PSVSVYSASEDKVVGTCSL-PAVFTAPIRHDVVQFVHTNMAKNSRQPYA-VNRLSGMKHS 62 Query: 61 GSKMYVQKGTGRARHSSKSVSQFRG--------------GGKAFGPVP----IIGVHALP 102 GTGRA + F G P + Sbjct: 63 AESW----GTGRA---VARIPVFTVVVRACRVLVHSVTCAGVVVCSHPQRSSRRWHRKIN 115 Query: 103 KKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD- 147 + A+ AL+ + I +V+++ V KTK +T + + Sbjct: 116 LHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGA 175 Query: 148 LSNALIIDGCQ------------------------LDRNFQLAARNIPNINLLPVQGINV 183 + + ++ + D A RNI ++L V +N+ Sbjct: 176 IDDVNRVNDSRQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNL 235 Query: 184 YDILRCSKL----VLSKSAIEALEDRF 206 + + + +KSA E L+ F Sbjct: 236 LHLAPGGHVGRFIIWTKSAFEKLDKIF 262 >gi|294878597|ref|XP_002768416.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] gi|239870844|gb|EER01134.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC 50983] Length = 393 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 77/259 (29%), Gaps = 59/259 (22%) Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK------GRSEV 57 +SV +L G + + +F + ++ V + KR K + Sbjct: 8 VSVYDLSGSSSST-TCAPTVFQAPLRPDLVRSVHSAMAKNKRQA-RGVKFEAGYETAAAS 65 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112 TG ++ G G R + GG F P+ + A+ Sbjct: 66 WGTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGGMFAPLKTWRRWHRKSNLTEKRHAMAS 125 Query: 113 ALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALD----------- 147 A++ + I +V+ V KTK V AL Sbjct: 126 AIAASALPPLVMARGHRIGEVPELPLVLSEGVESVQKTKDAVAVLEALGAGADVQRVKDS 185 Query: 148 ----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188 + ++ + D A RNIP I L V +N+ + Sbjct: 186 KKIRAGAGKMRNRRYVMRRGPLVVYAEGD-GLTKAFRNIPGIELCQVDRLNLLQVAPGGT 244 Query: 189 CSKLVL-SKSAIEALEDRF 206 + ++ ++ A + L+ F Sbjct: 245 FGRFIIWTQPAFDRLQQLF 263 >gi|195181384|emb|CAO82151.1| halogenase [Microcystis aeruginosa PCC 9812] Length = 626 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 34 ARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR--HSSKSVSQFRGGGKAF- 90 +++ Q K R V G + ++QK G A+ H++ S FR G+ Sbjct: 210 HKIIYTQGSGANQKTHCVKSRWVVDAMGRRRFIQKKLGLAKPNHNNYSAVWFRVEGRIDV 269 Query: 91 ----GPVPIIGVHALPKKVR 106 +P R Sbjct: 270 SNFVPASEEKWHQRVPNNNR 289 >gi|161528316|ref|YP_001582142.1| 50S ribosomal protein L4P [Nitrosopumilus maritimus SCM1] gi|160339617|gb|ABX12704.1| ribosomal protein L4/L1e [Nitrosopumilus maritimus SCM1] Length = 271 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 66/262 (25%) Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW--RKRIGCSKSKGRSEVA 58 M + +V G G + + +F+ ++ ++ + + + G + G+ VA Sbjct: 1 MTKTAVYTTTGTKDGEVEL-PAVFSTPFRRELIHKAFTNLTSHKFQPQGRHPTAGQDVVA 59 Query: 59 YTGSKMYVQKGTGRARHSSKSVSQ------------FRGGGKAFGPVPIIGVH-ALPKKV 105 + Q G +R + RGG +A P+ ++ L KK Sbjct: 60 DSNDPPTGQ---GVSRVARAQGGGGGRQGQGAEVASTRGGRQAHPPIVEKVIYKKLNKKE 116 Query: 106 RSLALRHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDL--- 148 + LAL A++ + + +V+ + + KT + +L L Sbjct: 117 KKLALCSAIAATASKDRVESRGHKVEGIESFPIVVSDDIESVSKTSEVSKILDSLKLTQD 176 Query: 149 ------------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184 + L + N A +P + V+ ++V Sbjct: 177 VQRLETRKARSGQSRLRGRSKKVGKSVLFVTKDAS--NISKAIGALPGVEATSVKDLSVL 234 Query: 185 DIL-RCSKL---VLSKSAIEAL 202 D+ + V SKSAIE + Sbjct: 235 DLAPGSDPIRLTVYSKSAIEEI 256 >gi|310794400|gb|EFQ29861.1| ribosomal protein L4/L1 family protein [Glomerella graminicola M1.001] Length = 387 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 84/297 (28%), Gaps = 96/297 (32%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56 +++ DG+ G +F + I+ V + + KR S S + +E Sbjct: 5 PTVTIIGKDGKSSGNTHTLPAVFLSPIRPDIVQEVHKGMAKNKRQPYSVSEKAGHQTSAE 64 Query: 57 VAYTG------------SKMYVQKGTGRARHSS------------------------KSV 80 TG + T R R + K Sbjct: 65 SWGTGNERDSFPIESCLRLLEDDNTTLRLRRGTNELPLRAPALLPLPPPNPLRPCGRKIS 124 Query: 81 SQFRG---GGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI----- 123 S F G+ F P + + + A A++ + + I Sbjct: 125 SAFGNMCRSGRMFAPTKTWRKWHVKVNQGQKRYATVSAIAASGVAPLLQARGHQISNVPE 184 Query: 124 --MVIDNLVSKEC------------KTKYLVTRFRALDLSNA------------------ 151 +V+D+ + + KT + S Sbjct: 185 VPLVVDSALFENAAVARTAAAVSLLKTVGAADDVEKVKKSKKLRAGKGKLRGRRFRQRRG 244 Query: 152 -LIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEAL 202 L+I ++D + A RN+P + PV +N+ + +V + +A ++L Sbjct: 245 PLVIYDPEVDGKELVTAFRNVPGVETSPVTSLNLLQLAPGGHLGRFVVWTSAAFKSL 301 >gi|13605831|gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thaliana] gi|22137186|gb|AAM91438.1| AT5g02870/F9G14_180 [Arabidopsis thaliana] gi|110740340|dbj|BAF02065.1| 60S ribosomal protein - like [Arabidopsis thaliana] Length = 307 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 49/169 (28%) Query: 86 GGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNL 129 GG+ F P + ++ A+ A++ + I +V+ + Sbjct: 4 GGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDS 63 Query: 130 VSKECKTKYLVTRFRALD----------------------------LSNALIIDGCQLDR 161 KT + + + L++ G + Sbjct: 64 AEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEG-A 122 Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKL---VL-SKSAIEALEDRF 206 A RN+P + L V+ +N+ + L V+ +KSA E LE + Sbjct: 123 KIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIY 171 >gi|159480122|ref|XP_001698133.1| hypothetical protein CHLREDRAFT_105965 [Chlamydomonas reinhardtii] gi|158273631|gb|EDO99418.1| predicted protein [Chlamydomonas reinhardtii] Length = 197 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 38 RWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-II 96 Q+ + G ++K R+ G + + Q G AR S + + +A P Sbjct: 25 WAQASHQGQGWHQAKERASHRGPGRR-WAQ---GWARASHQGQGWHQAKERASHRGPGRR 80 Query: 97 GVH 99 Sbjct: 81 WAQ 83 >gi|307102863|gb|EFN51129.1| hypothetical protein CHLNCDRAFT_37552 [Chlorella variabilis] Length = 305 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEAL 202 L+I G D A RN+P + + V+ +N+ + L + +KSA+E L Sbjct: 164 GRKGPLVIYGN--DSGISRAFRNLPGVEVCSVERLNLLQLAPGGHLGRFCIWTKSAVEKL 221 Query: 203 EDRF 206 + F Sbjct: 222 DAIF 225 >gi|227878224|ref|ZP_03996196.1| transcriptional antiterminator [Lactobacillus crispatus JV-V01] gi|227862188|gb|EEJ69735.1| transcriptional antiterminator [Lactobacillus crispatus JV-V01] Length = 594 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 20/112 (17%) Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT---RFRALDLSNAL---IIDGCQ 158 + L++K N+ ID K+ KYL + D +N L II + Sbjct: 135 IYRELKGTLLTEKIIQNNFKTIDVRSVKKALNKYLEKNNFKIDDFDFNNLLLHTIIMIDR 194 Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRC----SKLVLSKSAIEALEDRF 206 + N + N+ +N DI+ K+VLS S + LE+ F Sbjct: 195 GNDNLSITTSNLEIVN----------DIVNWIKNKQKVVLSNSDVRQLEEMF 236 >gi|319761464|ref|YP_004125401.1| udp-n-acetylglucosamine 2-epimerase [Alicycliphilus denitrificans BC] gi|317116025|gb|ADU98513.1| UDP-N-acetylglucosamine 2-epimerase [Alicycliphilus denitrificans BC] Length = 383 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 17/87 (19%) Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNI-----------P 171 + V+D L + + L +F L LI+ NF +NI P Sbjct: 179 LAVVDKLRANAALRQSLDEKFSFLKPGRRLILVTGHRRENFGEGFQNICHALADIASAHP 238 Query: 172 NINLLPVQGIN------VYDILRCSKL 192 + ++L +N V DIL +L Sbjct: 239 DADVLYPVHLNPNVRQPVRDILAARRL 265 >gi|255554603|ref|XP_002518340.1| conserved hypothetical protein [Ricinus communis] gi|223542560|gb|EEF44100.1| conserved hypothetical protein [Ricinus communis] Length = 377 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 9/97 (9%) Query: 92 PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK----ECKTKYLVTRFRALD 147 P + L + +ALS ++VI+++ K V ++ Sbjct: 208 PNRRDHLLQLTNGIWCKEKFYALS---AQGTLVVIEDIDFDLRITALGKKRSVPSVSSMH 264 Query: 148 LSNALIIDGCQLDRNFQLAARN-IPNINLLPVQGINV 183 L ++ + L +RN I ++ + V +N Sbjct: 265 FKEFL-VESEGMVLLVFLISRNSINTVDYVEVYQLNT 300 >gi|73536706|ref|XP_847772.1| ribosomal protein L1a [Leishmania major strain Friedlin] Length = 432 Score = 36.6 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 50/182 (27%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASSDSVVGTCPL-PAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 HSW---------GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL S ++ +V+++ + KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLK 171 Query: 145 AL 146 A+ Sbjct: 172 AI 173 >gi|189461838|ref|ZP_03010623.1| hypothetical protein BACCOP_02504 [Bacteroides coprocola DSM 17136] gi|189431432|gb|EDV00417.1| hypothetical protein BACCOP_02504 [Bacteroides coprocola DSM 17136] Length = 325 Score = 36.6 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 14/101 (13%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ I+++D ++ T+ + + ++ +I+ G Q+D A + Sbjct: 218 RTLNDAIVILDE--AQNTTTQQIKMFLTRMGMNTKMIVTGDMTQIDLPSSQTSGLVQAIK 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALEDRFK 207 + + + +N DI+R ++++ A E E++ K Sbjct: 276 ILKGVKGISFIELNKKDIVRHK--LVTRIVEAYEKFEEKTK 314 >gi|330902740|gb|EGH33753.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 55 Score = 36.6 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW-RKRIGCSK 50 ++L+V + I VSE F + + ++ + + +R+ SK Sbjct: 1 MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRRVASSK 45 >gi|296427104|gb|ADH16423.1| chemotaxis sensor histidine kinase [uncultured bacterium] Length = 144 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILAR--VLRWQSWRKRIG 47 V + G+ +I + E +F ++P+ L ++ + +R+G Sbjct: 73 EVISFRGDYLPIIRLHE-VFGVEPRSHALHEGLIVVAEGDGRRVG 116 >gi|112982800|ref|NP_001037129.1| ribosomal protein L4 [Bombyx mori] gi|54609195|gb|AAV34813.1| ribosomal protein L4 [Bombyx mori] Length = 428 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 64/223 (28%), Gaps = 53/223 (23%) Query: 4 LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57 +SV + E G +F + ++ V S R + + +E Sbjct: 10 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 69 Query: 58 AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108 TG ++ +G G R + GG+ F P + + R Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALAA 129 Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDG 156 R + +K ++V D + + KTK V R L S+ L + Sbjct: 130 AVAATGVPALVQARGHIIEKIPELPLVVADKVQ-EINKTKQAVIFLRRLKAWSDILKVYK 188 Query: 157 CQ-------------------------LDRNFQLAARNIPNIN 174 Q D+ A RNIP + Sbjct: 189 SQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVE 231 >gi|322488673|emb|CBZ23920.1| putative ribosomal protein L1a [Leishmania mexicana MHOM/GT/2001/U1103] Length = 373 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 71/263 (26%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60 +SV + + G + +F + I+ V + R + ++ Sbjct: 5 PSVSVYSASSDSVVGTCPL-PAVFTAPIRNDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 61 GSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGVHALP 102 S + GTGRA + + GG+ F P + Sbjct: 64 HS--W---GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKIN 115 Query: 103 KKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRAL-D 147 + A+ AL+ + I +V+++ + KTK + +A+ Sbjct: 116 LHQKRFAVVSALAASSVPSLVMSRGHKISNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAA 175 Query: 148 LSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQGINV 183 + + ++ + + A RNI ++L V +N+ Sbjct: 176 IDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNL 235 Query: 184 YDILRCSKL---VL-SKSAIEAL 202 + + V+ +KSA E L Sbjct: 236 LHLAPGGHVGRFVIWTKSAFEQL 258 >gi|237711192|ref|ZP_04541673.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 9_1_42FAA] gi|265750784|ref|ZP_06086847.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 3_1_33FAA] gi|229455036|gb|EEO60757.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 9_1_42FAA] gi|263237680|gb|EEZ23130.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 3_1_33FAA] Length = 334 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 14/101 (13%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ ++++D ++ T+ + + ++ +I+ G Q+D A + Sbjct: 218 RTLNDAVVILDE--AQNTTTQQIKMFLTRMGMNTKMIVTGDMTQIDLPSSQTSGLIQALK 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALEDRFK 207 + + + +N DI+R ++++ A E E++ K Sbjct: 276 ILKGVKGISFIELNKKDIVRHK--LVTRIVEAYEKFEEKQK 314 >gi|150005079|ref|YP_001299823.1| phosphate starvation-inducible protein PhoH [Bacteroides vulgatus ATCC 8482] gi|254883213|ref|ZP_05255923.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 4_3_47FAA] gi|294778887|ref|ZP_06744303.1| PhoH family protein [Bacteroides vulgatus PC510] gi|319642587|ref|ZP_07997234.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 3_1_40A] gi|149933503|gb|ABR40201.1| phosphate starvation-inducible protein PhoH [Bacteroides vulgatus ATCC 8482] gi|254836006|gb|EET16315.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 4_3_47FAA] gi|294447196|gb|EFG15780.1| PhoH family protein [Bacteroides vulgatus PC510] gi|317385821|gb|EFV66753.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. 3_1_40A] Length = 334 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 14/101 (13%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ ++++D ++ T+ + + ++ +I+ G Q+D A + Sbjct: 218 RTLNDAVVILDE--AQNTTTQQIKMFLTRMGMNTKMIVTGDMTQIDLPSSQTSGLIQALK 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALEDRFK 207 + + + +N DI+R ++++ A E E++ K Sbjct: 276 ILKGVKGISFIELNKKDIVRHK--LVTRIVEAYEKFEEKQK 314 >gi|212694469|ref|ZP_03302597.1| hypothetical protein BACDOR_03997 [Bacteroides dorei DSM 17855] gi|237727557|ref|ZP_04558038.1| phosphate starvation-inducible protein PhoH [Bacteroides sp. D4] gi|212662970|gb|EEB23544.1| hypothetical protein BACDOR_03997 [Bacteroides dorei DSM 17855] gi|229434413|gb|EEO44490.1| phosphate starvation-inducible protein PhoH [Bacteroides dorei 5_1_36/D4] Length = 334 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 14/101 (13%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ ++++D ++ T+ + + ++ +I+ G Q+D A + Sbjct: 218 RTLNDAVVILDE--AQNTTTQQIKMFLTRMGMNTKMIVTGDMTQIDLPSSQTSGLIQALK 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALEDRFK 207 + + + +N DI+R ++++ A E E++ K Sbjct: 276 ILKGVKGISFIELNKKDIVRHK--LVTRIVEAYEKFEEKQK 314 >gi|71403434|ref|XP_804517.1| 60S ribosomal protein L14 [Trypanosoma cruzi strain CL Brener] gi|70867533|gb|EAN82666.1| 60S ribosomal protein L14, putative [Trypanosoma cruzi] Length = 199 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 50/183 (27%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASEDKVVGTCPL-PAVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 ESW---------GTGRA---VARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ V KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLK 171 Query: 145 ALD 147 A+ Sbjct: 172 AIG 174 >gi|291333645|gb|ADD93336.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S11-C441] Length = 66 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-VLSKSAIEALE 203 + L++ + ARN+P ++++ + ++ D+ +L V +KSA+EALE Sbjct: 10 KSILLVVAQKG--GLDKGARNLPGVDVVTAKDLSAEDLAPGGDMGRLTVWTKSAVEALE 66 >gi|159117180|ref|XP_001708810.1| Ribosomal protein L4 [Giardia lamblia ATCC 50803] gi|157436924|gb|EDO81136.1| Ribosomal protein L4 [Giardia lamblia ATCC 50803] Length = 316 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 72/265 (27%), Gaps = 76/265 (28%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKR-----IGCSKSKGRS 55 + V G + +F + + I+ V R + + + Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60 Query: 56 EVAYTGSK----MYVQKGTG----RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS 107 G G G AR + V + R Sbjct: 61 HSWGPGRAVARLPRKHGGIGAYANFARGGHMAHP---------TTVIRRWCRKVNLNQRR 111 Query: 108 LALRHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL----- 148 A+ AL+ + I +V+D KTK + +A+ + Sbjct: 112 YAVASALAASANAALVEARGHRIADVPSIPLVVDTDNVT--KTKDALAIIKAVGVLRDVE 169 Query: 149 -----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 L+I + RN+P ++L V I + + Sbjct: 170 RCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED---VARGFRNLPGVDLCHVSSIRLLE 226 Query: 186 IL---RCSKLVL-SKSAIEALEDRF 206 + +L+L +KSA +L+D + Sbjct: 227 LAPGSHPGRLILWTKSAFASLDDVY 251 >gi|254167060|ref|ZP_04873913.1| peptidase, M24 family [Aciduliprofundum boonei T469] gi|197623916|gb|EDY36478.1| peptidase, M24 family [Aciduliprofundum boonei T469] Length = 309 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 151 ALIIDGCQLDRNFQLAARN-IPNINLLPVQ---GINVYDILRCSKLVLSK------SAIE 200 +I+ G + ++ N I ++ V IN Y L S+++ ++ A+E Sbjct: 161 TIIVSGGRSKYLLPKSSENKIEKGKIIYVDSSPQINGYH-LNFSRVIFTEERIEWVEALE 219 Query: 201 ALEDRF 206 + + Sbjct: 220 KINKMY 225 >gi|321452286|gb|EFX63709.1| hypothetical protein DAPPUDRAFT_335094 [Daphnia pulex] Length = 522 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 18/97 (18%) Query: 66 VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 Q+ GRA GK + + L + R LS + Sbjct: 217 AQQRAGRA--GRIRA------GKVYRLYTEDYFYTLNRFTPPEVQRSNLSSAVLQLKALG 268 Query: 126 IDN---LVSKECKTK-------YLVTRFRALDLSNAL 152 +D+ L+ +A+D S L Sbjct: 269 VDDVIHFDFPSPPPARHLAIALELLFALKAIDTSGRL 305 >gi|308511955|ref|XP_003118160.1| CRE-HIS-71 protein [Caenorhabditis remanei] gi|308238806|gb|EFO82758.1| CRE-HIS-71 protein [Caenorhabditis remanei] Length = 153 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 17/130 (13%) Query: 48 CSKSKGRSEVAYTGSKMYVQKGTGRARH-----SSKSVSQFRGGGKAFGPVPIIGVH--- 99 +++K + + G Q T AR G Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 60 Query: 100 ----ALPKK--VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI 153 LP + VR + R + N + + + ++ AL ++ Sbjct: 61 LLIRKLPFQRLVREIGERKKIDALLKQNQLFSAQDFKTD---LRFQSAAIGALQEASEAY 117 Query: 154 IDGCQLDRNF 163 + G D N Sbjct: 118 LVGLFEDTNL 127 >gi|322815151|gb|EFZ23874.1| hypothetical protein TCSYLVIO_10011 [Trypanosoma cruzi] Length = 137 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALED 204 N +P+ N +D ++ +LV+++ AI LE+ Sbjct: 9 NPIPINRFNAFDAMQHERLVITEGAIMQLEE 39 >gi|281412748|ref|YP_003346827.1| ribosomal protein L15 [Thermotoga naphthophila RKU-10] gi|281373851|gb|ADA67413.1| ribosomal protein L15 [Thermotoga naphthophila RKU-10] Length = 147 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 11/116 (9%) Query: 43 RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA--FGPVPIIGVHA 100 RKR+G G + + G K G+ S V + GG+ +P G + Sbjct: 16 RKRVGRGPGSGHGKTSGRGHK-------GQKARGSGKVHIWFEGGQTPLHRRLPKRGFNN 68 Query: 101 LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 + KKV ++ L ++F +N+ + + L+ ++ K V +L+ L++ Sbjct: 69 INKKVYAVVNVKVLEERFEANEEVTPEKLIERKIIKDLKDGVKILGDGELTKPLVV 124 >gi|148245025|ref|YP_001219719.1| orotate phosphoribosyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|167012543|sp|A5CVN5|PYRE_VESOH RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase gi|146326852|dbj|BAF61995.1| orotate phosphoribosyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 207 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 4/115 (3%) Query: 81 SQFRGGGKAFGPV-PIIGVHALPKK-VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138 AF ++ +K V++ + +I++ID++++ Sbjct: 76 PLVTATAVAFNNNFNKDVSYSFNRKEVKTYGEGGGIVGHSLEGNILIIDDVITAGTAIHE 135 Query: 139 LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193 V +A + +I + I + GI+V+ I+ S +V Sbjct: 136 AVDIIKANGATVKGVIVAVDRQEKGKSGQSAIQEVE--QNFGISVFSIINLSNVV 188 >gi|291333647|gb|ADD93338.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S11-C441] Length = 97 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 8/73 (10%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 7 RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66 +++ +D + + + F + ++ ++ + +R A++G K Sbjct: 26 YSVEAKDGKAVQLPDA-FTSQIREDLVRSAVLASRANRRQSYGHR------AHSG-KRSP 77 Query: 67 QKGTGRARHSSKS 79 Q G + Sbjct: 78 QPGMKHSVEWWAR 90 >gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 460 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 18/83 (21%) Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150 VP VH + + R+ A A+S +A++ + Sbjct: 322 PNVPEQYVHRIGRTARAGAEGIAISFVADDER------------------PYLKAIERTT 363 Query: 151 ALIIDGCQLDRNFQLAARNIPNI 173 + +D L NF A RN+P Sbjct: 364 KVKLDVVPLPENFVEAVRNLPKA 386 >gi|253741651|gb|EES98516.1| Ribosomal protein L4 [Giardia intestinalis ATCC 50581] Length = 316 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 76/265 (28%) Query: 2 IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKR-----IGCSKSKGRS 55 + V G + +F + + I+ V R + + + Sbjct: 3 PTVKVFGATGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60 Query: 56 EVAYTGSK----MYVQKGTG----RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS 107 G G G AR + V + R Sbjct: 61 HSWGPGRAVARLPRKHGGIGAYANFARGGHMAHP---------TTVIRRWCRKVNLNQRR 111 Query: 108 LALRHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRALDL----- 148 A+ AL+ + I +V+D KTK + +A+ + Sbjct: 112 YAVASALAASANASLVEARGHRIADVPSIPLVVDTDNVT--KTKDAMAIIKAVGVLRDVE 169 Query: 149 -----------------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 L+I + RNIP ++L V I + + Sbjct: 170 RCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED---VARGFRNIPGVDLCHVSSIRLLE 226 Query: 186 IL---RCSKLVL-SKSAIEALEDRF 206 + +L+L +KSA +L+D + Sbjct: 227 LAPGSHPGRLILWTKSAFASLDDVY 251 >gi|223984198|ref|ZP_03634346.1| hypothetical protein HOLDEFILI_01639 [Holdemania filiformis DSM 12042] gi|223963813|gb|EEF68177.1| hypothetical protein HOLDEFILI_01639 [Holdemania filiformis DSM 12042] Length = 235 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 19/114 (16%) Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK-----------YLVTRFRALDLSNA 151 K R + + S K + +D ++ K +V +A Sbjct: 2 MKERDVMIACDFSTKA--ETMAFLDKFTEEKPYVKIGMELFYAEGPDMVREIKARGHKIF 59 Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205 L + + + A RNI LL V NV+ + + K+A EA+++ Sbjct: 60 LDLKLHDIPNTVKKAMRNIA---LLDVDMTNVH---AAGTIEMMKAAQEAIDEV 107 >gi|148270441|ref|YP_001244901.1| 50S ribosomal protein L15 [Thermotoga petrophila RKU-1] gi|170289164|ref|YP_001739402.1| ribosomal protein L15 [Thermotoga sp. RQ2] gi|166234530|sp|A5IMA2|RL15_THEP1 RecName: Full=50S ribosomal protein L15 gi|226710274|sp|B1LBM1|RL15_THESQ RecName: Full=50S ribosomal protein L15 gi|147735985|gb|ABQ47325.1| LSU ribosomal protein L15P [Thermotoga petrophila RKU-1] gi|170176667|gb|ACB09719.1| ribosomal protein L15 [Thermotoga sp. RQ2] Length = 147 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 11/116 (9%) Query: 43 RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA--FGPVPIIGVHA 100 RKR+G G + + G K G+ S V + GG+ +P G + Sbjct: 16 RKRVGRGPGSGHGKTSGRGHK-------GQKARGSGKVHIWFEGGQTPLHRRLPKRGFNN 68 Query: 101 LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 + KKV ++ L ++F +N+ + + L+ ++ K + +L+ L++ Sbjct: 69 INKKVYAVVNVKVLEERFEANEEVTPEKLIERKIIKDLKDGIKILGDGELTKPLVV 124 >gi|119473011|ref|XP_001258467.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya fischeri NRRL 181] gi|119406619|gb|EAW16570.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya fischeri NRRL 181] Length = 1276 Score = 35.4 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 25 ALKPQQGILA--RVLRWQSWRKRIGCSKSKGRSEVAYTG--SKMYVQKGTGRA----RHS 76 A++ +Q IL R L + R R G +K RS V+ +G Q A + Sbjct: 34 AVEERQEILDIIRDLETRLARLRRGGQATKTRSPVSRSGTPGSPLSQAQLDGAALPRSNG 93 Query: 77 SKSVSQFRGGGKAFGPVP 94 + S Q+ + P Sbjct: 94 ALSPPQWGSSALSPPIRP 111 >gi|119598632|gb|EAW78226.1| hCG2021224 [Homo sapiens] Length = 230 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 D A RNIP I LL V +N+ + + + ++SA L++ + Sbjct: 142 DNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 192 >gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S] gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S] Length = 461 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 18/83 (21%) Query: 91 GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150 VP VH + + R+ A A+S +A++ + Sbjct: 322 PNVPEQYVHRIGRTARAGAEGVAISFVADDER------------------PYLKAIERTT 363 Query: 151 ALIIDGCQLDRNFQLAARNIPNI 173 + +D L NF A RN+P Sbjct: 364 KVKLDVVPLPENFVEAVRNLPKA 386 >gi|325297313|ref|YP_004257230.1| PhoH family protein [Bacteroides salanitronis DSM 18170] gi|324316866|gb|ADY34757.1| PhoH family protein [Bacteroides salanitronis DSM 18170] Length = 326 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ ++++D ++ T+ + + L+ +I+ G Q+D A + Sbjct: 218 RTLNDAVVILDE--AQNTTTQQIKMFLTRMGLNTKMIVTGDMTQIDLPSHQTSGLIQALK 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALEDRFK 207 + I + +N DI+R ++++ A E E+ K Sbjct: 276 ILKGIKGISFIELNKKDIVRHK--LVTRIVEAYEKFEEEIK 314 >gi|321398509|emb|CBZ08868.1| putative ribosomal protein L1a [Leishmania infantum JPCM5] Length = 373 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 82/271 (30%), Gaps = 79/271 (29%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASSDSVVGTCPL-PAVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 HSW---------GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ + KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPSLVMSRGHRIDNVPEVPLVVEDSIQGYEKTKEAMAFLK 171 Query: 145 AL-DLSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + + A RNI ++L V Sbjct: 172 AIAAIDDVNRVNDSREIRAGCGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVS 231 Query: 180 GINVYDILRCSKL---VL-SKSAIEALEDRF 206 +N+ + + V+ +KSA E L+ F Sbjct: 232 ALNLLHLAPGGHVGRFVIWTKSAFEQLDKIF 262 >gi|44966650|gb|AAS49558.1| ribosomal protein L4 [Latimeria chalumnae] Length = 289 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 56/201 (27%), Gaps = 50/201 (24%) Query: 24 FALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGRARH 75 F + ++ V R + S + +E TG ++ +G G R Sbjct: 1 FKAPIRPDVVNFVRTNLRKNSRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRS 60 Query: 76 SSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI 123 + GG+ F P + + A+ LS +I Sbjct: 61 GQGAFGNMCRGGRMFAPTKTWRRWHRRVNITQKRYAICSALAASALPALVLSKGHRIEEI 120 Query: 124 ----MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQ-------------------- 158 +V+D+ V KTK V + L ++ + Q Sbjct: 121 PEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDVKKVYASQRMRAGKGKMRNRRCIQRRGP 180 Query: 159 -----LDRNFQLAARNIPNIN 174 D A RNIP I Sbjct: 181 CIIYSEDNGITKAFRNIPGIT 201 >gi|297153722|gb|ADI03434.1| modular polyketide synthase [Streptomyces bingchenggensis BCW-1] Length = 3515 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168 A R AL + + V +LV + V A D L++ + D ++AAR Sbjct: 2445 APRRALVNSVAAGGSHV--SLVIEAPPKVEAV-VEGAHDPGRQLVVVSGRTDERLRIAAR 2501 Query: 169 NIPNINLLPVQGINVYDI 186 + + +++ D+ Sbjct: 2502 RLHTYLVDHADTVHLADV 2519 >gi|163839836|ref|YP_001624241.1| hypothetical protein RSal33209_1089 [Renibacterium salmoninarum ATCC 33209] gi|162953312|gb|ABY22827.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 112 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 19/35 (54%) Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197 +AR + N+ ++ + +NV ++ + L L K+ Sbjct: 69 VYRSARFVKNVRVITFKDVNVEELAKSDDLELLKA 103 >gi|227871782|ref|ZP_03990187.1| ribosomal protein L15 [Oribacterium sinus F0268] gi|227842383|gb|EEJ52608.1| ribosomal protein L15 [Oribacterium sinus F0268] Length = 147 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 54 RSEVAYTGSKMYVQKGTG--RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 R +G+ KG +AR + + G F +P G KV + Sbjct: 20 RGRGHGSGNGKTAGKGHKGQKARSGAPRIGFEGGQMPLFRRIPKRGFTDPNSKVITGINV 79 Query: 112 HALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 L D++ + D + ++NL+ K K V +L+ L + Sbjct: 80 SVLEDRYNAGDEVTLENLLEKRIIRKVNDGVKILGNGELTKKLTV 124 >gi|294999386|gb|ADF58428.1| histone H3 [Oryza sativa Indica Group] Length = 136 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 5/59 (8%) Query: 48 CSKSKGRSEVAYTGSKMYVQKGTGRARH-----SSKSVSQFRGGGKAFGPVPIIGVHAL 101 +++K R ++ G QK T AR G ++ Sbjct: 1 MARTKQRRAMSTGGKAPRKQKATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSI 59 >gi|296426968|gb|ADH16355.1| chemotaxis sensor histidine kinase [uncultured bacterium] Length = 143 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILAR--VLRWQSWRKRIG 47 V + G+ +I + + +F ++P+ L ++ + +R+G Sbjct: 72 EVISFRGDYLPIIRLHD-VFGVQPRSHALHEGLIVVAEGDGRRVG 115 >gi|297825465|ref|XP_002880615.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326454|gb|EFH56874.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 190 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVLSKSAIEALED 204 LI+ G + A RNIP I+L V+ + +L+ +V +KSA E LE Sbjct: 13 LIVYGNEG-AKLVKAFRNIPGIDLCHVEK---FSLLKLAPGGHLGRFVVWTKSAFEKLES 68 Query: 205 RF 206 + Sbjct: 69 VY 70 >gi|88770698|gb|ABD51952.1| 60S ribosomal protein 1 [Rhodomonas salina] Length = 109 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 68 KGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD 116 G+G R +++ GG+ FGP H + K R AL A++ Sbjct: 1 PGSGTHRSGQGAITNMCRGGRIFGPTTVWRKWHHKINKNQRRQALMTAIAS 51 >gi|71409315|ref|XP_807010.1| 60S ribosomal protein L4 [Trypanosoma cruzi strain CL Brener] gi|70870912|gb|EAN85159.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi] Length = 163 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 36/138 (26%) Query: 2 IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + + G+ + +F + I+ V + R + S Sbjct: 5 PSVSVYSASEDKVVGICPL-PAVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 ESW---------GTGRA---VARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD 116 + + A+ AL+ Sbjct: 112 RKINLHQKRFAVVSALAA 129 >gi|298714853|emb|CBJ25752.1| weakly similar Glutamic acid-rich protein precursor [Ectocarpus siliculosus] Length = 773 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 15/132 (11%) Query: 49 SKSKGRSEVAYTGSKMYV-------QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHAL 101 + KGR+ A + + G+GR R ++ S+++ G + P + Sbjct: 154 ASPKGRNSRAPSRRQPRPSAWTGDGAGGSGRRRSGARGSSRYQRGRRPAAPTTRGFAVRM 213 Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALI-I--- 154 P V A+ AL K + V ++ L + + +AL+ + Sbjct: 214 P-AVSGAAIASALRQKMGTAAEAVGQAGSLAASTSQKLKREVKLVVSGSWESALLKVTWP 272 Query: 155 DGCQLDRNFQLA 166 D D L+ Sbjct: 273 DDLPPDETLVLS 284 >gi|153854989|ref|ZP_01996202.1| hypothetical protein DORLON_02208 [Dorea longicatena DSM 13814] gi|149752486|gb|EDM62417.1| hypothetical protein DORLON_02208 [Dorea longicatena DSM 13814] Length = 146 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 9/117 (7%) Query: 40 QSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH 99 QS R G G + A G K QK AR G + +P G Sbjct: 14 QSDNFRRGRGHGSGNGKTAGKGHK--GQK----ARSGGTRPGFEGGQMPLYRRIPKRGFT 67 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 K AL + F ++ ++ +D L+ + K V +L+ L + Sbjct: 68 NRNTKTIVGINVSAL-EVFENDTVVTVDTLIEQGIVTNPKDGVKILGNGELTKKLTV 123 >gi|321398507|emb|CAM69676.2| putative ribosomal protein L1a [Leishmania infantum JPCM5] gi|321398508|emb|CBZ08867.1| putative ribosomal protein L1a [Leishmania infantum JPCM5] gi|322500764|emb|CBZ35841.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 373 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 82/271 (30%), Gaps = 79/271 (29%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASSDSVVGTCPL-PAVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 HSW---------GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ + KTK + + Sbjct: 112 RKINLHQKRFAVVSALAASSVPSLVMSRGHRIDNVPEVPLVVEDSIQGYEKTKEAMAFLK 171 Query: 145 AL-DLSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + + A RNI ++L V Sbjct: 172 AIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVS 231 Query: 180 GINVYDILRCSKL---VL-SKSAIEALEDRF 206 +N+ + + V+ +KSA E L+ F Sbjct: 232 ALNLLHLAPGGHVGRFVIWTKSAFEQLDKIF 262 >gi|160941051|ref|ZP_02088389.1| hypothetical protein CLOBOL_05944 [Clostridium bolteae ATCC BAA-613] gi|158436000|gb|EDP13767.1| hypothetical protein CLOBOL_05944 [Clostridium bolteae ATCC BAA-613] Length = 146 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 3/105 (2%) Query: 52 KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111 KGR + G +AR + G + +P G + K Sbjct: 20 KGRGHGSGNGKTAGKGHKGQKARSGATRPGFEGGQMPLYRRLPKRGFTNMNSKTIIGINV 79 Query: 112 HALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 AL ++F ++ + ++ L+ + V +L+ L + Sbjct: 80 SAL-ERFDNDAEVTVETLIEAGIVKNPRDGVKILGNGELTKKLTV 123 >gi|114565337|ref|XP_001136829.1| PREDICTED: hypothetical protein [Pan troglodytes] Length = 220 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALED 204 D A RNIP I LL V +N+ + + + +KSA + L++ Sbjct: 132 DNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGLFCIWTKSAFQKLDE 180 >gi|239623366|ref|ZP_04666397.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522332|gb|EEQ62198.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 9/117 (7%) Query: 40 QSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH 99 S R G G + A G K QK AR + G + +P G Sbjct: 14 HSDNFRRGRGHGSGNGKTAGKGHK--GQK----ARSGATRPGFEGGQMPLYRRIPKRGFT 67 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 + K AL ++F ++ + ++ L+ + V +L+ L + Sbjct: 68 NMNSKTIVGINVSAL-ERFDNDAEVTVETLIEAGIVKNPRDGVKILGNGELTKKLTV 123 >gi|225387885|ref|ZP_03757649.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme DSM 15981] gi|225046012|gb|EEG56258.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme DSM 15981] Length = 797 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%) Query: 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK----- 135 + G VP + KK L AL+ + +V D++ + Sbjct: 457 PRTMGALGYVMNVPEEEKYLNTKKELEAMLVEALAGRAAEE--LVFDSVTTGASNDIEKA 514 Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN--VYDILR----- 188 T +S + G + N L+ RN+ N + I+ V IL+ Sbjct: 515 TNLARAMITQYGMSEKFGLMGLETRENQYLSGRNVLNCSEATAGEIDQEVMRILKESYEE 574 Query: 189 CSKLVLS-KSAIEALEDRF 206 +L+ + A++ + + Sbjct: 575 AKRLLAENRDAMDKIAEFL 593 >gi|296426662|gb|ADH16202.1| chemotaxis sensor histidine kinase [uncultured bacterium] Length = 144 Score = 34.6 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILAR--VLRWQSWRKRIG 47 V + G+ +I + E +F ++P+ L ++ + +R+G Sbjct: 73 EVISFRGDYLPIIRLHE-VFGVQPRSHALHEGLIVVAEGDGRRVG 116 >gi|224542257|ref|ZP_03682796.1| hypothetical protein CATMIT_01432 [Catenibacterium mitsuokai DSM 15897] gi|224524799|gb|EEF93904.1| hypothetical protein CATMIT_01432 [Catenibacterium mitsuokai DSM 15897] Length = 146 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 36/138 (26%) Query: 67 QKGTGRARHSSKSVSQFRGGGK-AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125 QKG G AR F GG F +P G K + I+ Sbjct: 35 QKGQG-ARSGGGKKPGFEGGQTPLFMRLPKRGFTNHNAKEYA---------------IIN 78 Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185 +++L N ++D + +L + + + +L +NV Sbjct: 79 VEDLN----------------KFENGAVVDLEAVME-AKLVKKALDGLKVLGRGELNVAL 121 Query: 186 ILRCSKLVLSKSAIEALE 203 ++ SK SKSA++A+E Sbjct: 122 TVKASK--FSKSAVKAIE 137 >gi|228924383|ref|ZP_04087620.1| Transposase, IS605 OrfB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835263|gb|EEM80667.1| Transposase, IS605 OrfB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 377 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 14/106 (13%) Query: 90 FGPVPIIGVHALPKKVRSLALRHALSDKF---CSNDIMVIDNLVSKECKTKYLVTRFRAL 146 + KK++ + LS + + I ++D ++ K K R Sbjct: 196 HKIDNNKFTSKMEKKLKREQRK--LSKRALLAKNKGIHLLDAKNYQKQKCKVARLHER-- 251 Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192 + + D +L+ I N +++ ++ +N +LR KL Sbjct: 252 -------VINQRDDFLNKLSTEIIKNHDIICIEDLNTKGMLRNHKL 290 >gi|213583771|ref|ZP_03365597.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 35 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ 40 +EL +++ ++VSE F + ++ +V+ Sbjct: 1 MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAY 35 >gi|189467977|ref|ZP_03016762.1| hypothetical protein BACINT_04371 [Bacteroides intestinalis DSM 17393] gi|189436241|gb|EDV05226.1| hypothetical protein BACINT_04371 [Bacteroides intestinalis DSM 17393] Length = 333 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 14/97 (14%) Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLD------RNFQLAAR 168 + ++ ++++D ++ T+ + + ++ +I+ G Q+D A R Sbjct: 218 RTLNDAVVILDE--AQNTTTQQIKMFLTRMGMNTKMIVTGDMTQIDLPSSQTSGLVQALR 275 Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSK--SAIEALE 203 + + + +N DI+R ++++ A E E Sbjct: 276 ILKGVKGISFVELNKKDIVRHQ--LVTRIVDAYEKFE 310 >gi|328883316|emb|CCA56555.1| putative ABC transporter ATP-binding protein [Streptomyces venezuelae ATCC 10712] Length = 353 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 16/142 (11%) Query: 40 QSWRKRIGCSKS--KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG 97 +R G R + TG K Q G R + S F P G Sbjct: 109 HLGARRAGTRAEELLERFGLTDTGHKPVKQFSGGMRRRLDLAASLITEPEVLFLDEPTTG 168 Query: 98 VHALPKKVRSLALRHA--------LSDKFCS------NDIMVIDNLVSKECKTKYLVTRF 143 + + ++R L+ ++ + I V+D T + Sbjct: 169 LDPRGRGEVWESVRSLVGGGTTVLLTTQYLEEADQLADRISVVDRGRVVADGTPDELKAL 228 Query: 144 RALDLSNALIIDGCQLDRNFQL 165 +D + ++ DG +LD L Sbjct: 229 VGVDRIDVVVRDGARLDEAAAL 250 >gi|325479216|gb|EGC82313.1| ribosomal protein L15 [Anaerococcus prevotii ACS-065-V-Col13] Length = 159 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 33/156 (21%) Query: 49 SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK-AFGPVPIIGVHALPKKVRS 107 +K KGR + G++ + +R F GG + +P G + +K+ Sbjct: 15 AKRKGRGPGSGNGTRAGRGQDGQNSRSGGGVRPGFEGGQMPLYRRLPKRGFKNINRKIY- 73 Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167 + + L +++ L+ L+ N A Sbjct: 74 ------------------------ETINVETLNAFEDGTEITPELLFANKFLNENKAKA- 108 Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203 + +L +N ++ K +KSA+E +E Sbjct: 109 ----GVKILGDGELNKKLTVKAHK--FTKSAVEKIE 138 >gi|194387076|dbj|BAG59904.1| unnamed protein product [Homo sapiens] Length = 239 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 D A RNIP I LL V +N+ + + + ++SA L++ + Sbjct: 103 DNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 153 >gi|154341014|ref|XP_001566460.1| ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904] gi|154341020|ref|XP_001566463.1| ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063783|emb|CAM39971.1| putative ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063786|emb|CAM39974.1| putative ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904] Length = 373 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 82/271 (30%), Gaps = 79/271 (29%) Query: 2 IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSE 56 +SV + + G + +F + I+ V + R + S Sbjct: 5 PSVSVYSASSDSVVGTCPL-PAVFTAPIRSDIVQFVHTNMAKNSRQAYAVNRLSGMNHSA 63 Query: 57 VAYTGSKMYVQKGTGRARHSSKSVSQFR----------------GGGKAFGPVP--IIGV 98 ++ GTGRA + + GG+ F P Sbjct: 64 HSW---------GTGRA---VARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWH 111 Query: 99 HALPKKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR 144 + + A+ AL+ + I +V+++ + KTK V + Sbjct: 112 RKINLHQKRFAVVSALAASSVPSLVMSRGHKIENVPEVPLVVEDSIQGYEKTKEAVAFLK 171 Query: 145 AL-DLSNALIIDGCQL------------------------DRNFQLAARNIPNINLLPVQ 179 A+ + + ++ + + A RNI ++L V Sbjct: 172 AIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNQGTRAFRNIFGLDLANVS 231 Query: 180 GINVYDILRCSKL---VL-SKSAIEALEDRF 206 +N+ + + V+ +K+A E L+ F Sbjct: 232 ALNLLHLAPGGHVGRFVIWTKTAFEQLDKIF 262 >gi|255003369|ref|ZP_05278333.1| hypothetical protein AmarPR_03881 [Anaplasma marginale str. Puerto Rico] Length = 282 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 36/192 (18%) Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARV---LRWQSWRKRIGCSKSKGRSEVAY 59 E+SV + ++G + + +++ + ++ +R+ + R E A Sbjct: 76 EVSVDDAQKRNEG--EKKPPVQGSETTGDVVSETTSDVVAETNAERV---QDGDRGESAG 130 Query: 60 TGSKMYVQKGTGRARHSSKSVSQFR--GGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117 + + G+ARH R +H LP+ R+ + Sbjct: 131 DSANLPR----GKARHW----PHRRAAHPYIETDAYNNDNMH-LPRFHRAEDYYAHVFYC 181 Query: 118 FCSNDIM----VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN--IP 171 +NDI V+D L + K+++ RA + N LI A R+ I Sbjct: 182 AKANDITGLLAVVDELAAMGKNQKFVMEEMRANNGDNLLI-----------YAVRHGAID 230 Query: 172 NINLLPVQGINV 183 + L G +V Sbjct: 231 TVRYLLSNGADV 242 >gi|163815994|ref|ZP_02207364.1| hypothetical protein COPEUT_02174 [Coprococcus eutactus ATCC 27759] gi|158448804|gb|EDP25799.1| hypothetical protein COPEUT_02174 [Coprococcus eutactus ATCC 27759] gi|295093652|emb|CBK82743.1| LSU ribosomal protein L15P [Coprococcus sp. ART55/1] Length = 146 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 9/117 (7%) Query: 40 QSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH 99 S R+G G + A G K QK AR S G + +P G + Sbjct: 14 HSANFRVGRGHGSGNGKTAGKGHK--GQK----ARSGSPRPGFEGGQMPLYRRLPKRGFN 67 Query: 100 ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--KTKYLVTRFRALDLSNALII 154 + K AL ++F + ++ LV + V +L+ L + Sbjct: 68 CINHKEIVAINVSAL-ERFEDGSDVTVETLVEAGIIKNPRDGVKILGNGELTKKLNV 123 >gi|78557859|gb|ABB46357.1| ribosomal protein L4 [Ovis aries] Length = 193 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206 D A RNIP I LL V +N+ + + + ++SA L++ + Sbjct: 77 DNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 127 >gi|281205909|gb|EFA80098.1| hypothetical protein PPL_06920 [Polysphondylium pallidum PN500] Length = 311 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 16/104 (15%) Query: 102 PKKVRSLALRHA---------LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNAL 152 K+R + S+ + ++ID+ + + + L L Sbjct: 22 NAKLRKTVFKSGVSVGTGLTTFSESHQDGNNLIIDSPGLADPIKRNEAAKQIESSLKKVL 81 Query: 153 -IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195 IID + R + L V+ +N IL+ + Sbjct: 82 NIIDNIDYPEVTLESGR----VRLQDVETLN--SILKAITVEFE 119 >gi|256251616|emb|CAR63711.1| putative Ribosomal Protein [Angiostrongylus cantonensis] Length = 179 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Query: 166 AARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEALEDRF 206 A RNIP +++L V+ +N+ + +L++ ++SA + L+ + Sbjct: 53 AFRNIPGVDILNVERLNLLKVAPGGHLGRLIIWTESAFKKLDAIY 97 >gi|296427138|gb|ADH16440.1| chemotaxis sensor histidine kinase [uncultured bacterium] Length = 143 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 5 SVRNLDGEDKGVISVSEDIFALKPQQGILAR--VLRWQSWRKRIG 47 V + G+ +I + E IF ++P+ L V+ + +R+G Sbjct: 72 EVISFRGDYLPIIRLHE-IFGVEPRSRALHEGLVVVAEGDGRRVG 115 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.313 0.178 0.529 Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,640,010,477 Number of Sequences: 13984884 Number of extensions: 236804197 Number of successful extensions: 513833 Number of sequences better than 10.0: 2689 Number of HSP's better than 10.0 without gapping: 4260 Number of HSP's successfully gapped in prelim test: 493 Number of HSP's that attempted gapping in prelim test: 504457 Number of HSP's gapped (non-prelim): 5118 length of query: 207 length of database: 4,792,584,752 effective HSP length: 133 effective length of query: 74 effective length of database: 2,932,595,180 effective search space: 217012043320 effective search space used: 217012043320 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 79 (34.6 bits)