PSIBLAST alignment of GI: 254780260 and protein with PDB id: 2j01
gi|116668237|pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 210
>gi|116668298|pdb|2J03|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 210
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 5/203 (2%)
Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
++ V + G + + + +L V+RWQ ++R G + +K R EVAY+G
Sbjct: 8 QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62
Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+
Sbjct: 63 KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122
Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
+++++ KTK + + L + + + + AARN+P + L +G+N
Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLN 182
Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
VYDI+R +LV+ A E ++R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205