RPSBLAST alignment of GI: 254780260 and protein with PDBid: 2j01
>2j01_F 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.22.1.1 PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 3hux_F 3huz_F 3f1f_F 3d5d_F 3d5b_F 3f1h_F ... Length = 210
Score = 134 bits (337), Expect = 2e-32
Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)
Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
+ ++ V + G + + +I +L V+RWQ ++R G + +K R EVAY+
Sbjct: 6 VYQIPVLSPSGRRELAADLPAEI-----NPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 60
Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
G K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+
Sbjct: 61 GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 120
Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
+++++ KTK + + L + + + + AARN+P + L +G
Sbjct: 121 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEG 180
Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
+NVYDI+R +LV+ A E ++R
Sbjct: 181 LNVYDIVRTERLVMDLDAWEVFQNRI 206