RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4
[Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
[TaxId: 562]}
Length = 198
Score = 154 bits (390), Expect = 6e-39
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 5/203 (2%)
Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
+EL +++ + ++VSE F + ++ +V+ + R G K R+EV +G
Sbjct: 1 MELVLKD----AQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56
Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
K + QKGTGRAR S +R GG F P + KK+ AL+ LS+ +
Sbjct: 57 KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116
Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
++V++ + KTK L + + + L + LII G +LD N LAARN+ +++ GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175
Query: 182 NVYDILRCSKLVLSKSAIEALED 204
+ ++ K+V++ A++ +E+
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEE 198
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 197
Score = 147 bits (371), Expect = 9e-37
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
+++V +G + + E G+L V+ WQ +R G + ++ R++V+ TG
Sbjct: 2 QINVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGR 55
Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ +
Sbjct: 56 KMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGK 115
Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
++ +D + KTK ++ + L + D N + AARN+ +++LPV G+N
Sbjct: 116 LVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGVN 175
Query: 183 VYDILRCSKLVLSKSAIEALED 204
VYDILR +LV+ +A+E +E+
Sbjct: 176 VYDILRHDRLVIDAAALEIVEE 197
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 140 bits (353), Expect = 9e-35
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 19/223 (8%)
Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
++ + N+ GE G + +S+ +F + P ++ R + Q +R G + +K R EV+ G
Sbjct: 2 QVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGR 61
Query: 63 KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
K + QK TGRARH S +R GG GP P L KK++ LALR ALS K+ N
Sbjct: 62 KPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENK 121
Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSN----ALIIDGCQLDRNFQLAARNIPNINLLP- 177
++V+D+L + KTK L + L LS+ ++ + N +L+ RN+P++ ++
Sbjct: 122 LLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIA 181
Query: 178 --------------VQGINVYDILRCSKLVLSKSAIEALEDRF 206
+ G+NV+D+L+ LVL++ + +E+
Sbjct: 182 DNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 224
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 134 bits (337), Expect = 8e-33
Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)
Query: 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
+ ++ V + G + + +I +L V+RWQ ++R G + +K R EVAY+
Sbjct: 6 VYQIPVLSPSGRRELAADLPAEI-----NPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 60
Query: 61 GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
G K++ QK TGRARH F GGG FGP P + LPKKVR L A++D+
Sbjct: 61 GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 120
Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
+++++ KTK + + L + + + + AARN+P + L +G
Sbjct: 121 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEG 180
Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
+NVYDI+R +LV+ A E ++R
Sbjct: 181 LNVYDIVRTERLVMDLDAWEVFQNRI 206
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 246
Score = 130 bits (327), Expect = 1e-31
Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 44/246 (17%)
Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
+ ++ +LDG G + + D+F + ++ + +R ++ + S
Sbjct: 2 QATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAES 60
Query: 63 --KMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
Q + ++ V Q G A P L K R LA+R AL+
Sbjct: 61 FGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATAD 120
Query: 120 SNDIM-------------VIDNLVSKECKTKYLVTRFRALDLSNALIIDG---------- 156
++ + V+ + KT+ +V+ ALD+ +
Sbjct: 121 ADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGS 180
Query: 157 -------------CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAI 199
AARN+ ++ +N D+ V ++SA+
Sbjct: 181 ARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESAL 240
Query: 200 EALEDR 205
+ +R
Sbjct: 241 AEVAER 246
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 25.5 bits (55), Expect = 3.1
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 79 SVSQFRGGGKAFGPVPIIGV-HALPKKVRS 107
SVS+ R +A GP I+ + A P
Sbjct: 3 SVSEIRKAQRAEGPATILAIGTANPANCVE 32
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 24.7 bits (54), Expect = 6.7
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
+ +++P+ + + ++L + + SK
Sbjct: 15 IEQGFKDVPSFVHEG-GDVPLVELLVSAGISPSKR 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 745,956
Number of extensions: 32385
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 8
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)