HHsearch alignment for GI: 254780261 and conserved domain: TIGR03625
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Probab=100.00 E-value=0 Score=595.44 Aligned_cols=202 Identities=53% Similarity=0.848 Sum_probs=197.7
Q ss_pred CEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE
Q ss_conf 26899658451698898792268999179789999706778861256405555643157101125764035634103653
Q gi|254780261|r 4 GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEF 83 (221)
Q Consensus 4 Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~Ef 83 (221)
T Consensus 1 Glig~KiGMT~i~~~~G~~vPVTVl~v~~~~V~~~kt~e~dGY~avqlg~~~~k~k~~~Kp~~G~~~K~~~~~~~~l~Ef 80 (202)
T TIGR03625 1 GLLGKKVGMTQIFTEDGKAVPVTVIEVGPNVVTQVKTVEKDGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLREF 80 (202)
T ss_pred CCCEEECCCEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHCCCCCCEEEEE
T ss_conf 96289658807888999699879999589899999921689806889831224532228545110455135765237999
Q ss_pred ECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 20651121100341000123025326578987534336405750442123335774543466655555675224226766
Q gi|254780261|r 84 RVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKM 163 (221)
Q Consensus 84 rv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm 163 (221)
T Consensus 81 rv~~~~-~~~~G~~l~v~~F~~Gq~VdV~g~skGKGFqGv~KR~~F~g~~~sHG~s~~hR~~GSiG~~~~PgrV~kGkkM 159 (202)
T TIGR03625 81 RVDDLD-GYEVGDEITVDIFEAGQKVDVTGTSKGKGFAGVMKRHNFSGGPASHGNSKSHRAPGSIGQRQTPGRVFKGKKM 159 (202)
T ss_pred EECCCC-CCCCCCEECHHHCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 716732-2468776458670788638888877066432017750247897535688777388867667888878578987
Q ss_pred CCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEE
Q ss_conf 65237733365165899980768989997157458887099996
Q gi|254780261|r 164 AGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVR 207 (221)
Q Consensus 164 ~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir 207 (221)
T Consensus 160 aG~mG~~~~T~~nl~v~~id~e~nli~vkGsVPG~-~~~~v~ir 202 (202)
T TIGR03625 160 AGHMGNERVTVQNLEVVRVDAERNLLLVKGAVPGA-KGSLVLIK 202 (202)
T ss_pred CCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEC
T ss_conf 88758852887467899995888989997368789-99899969