HHsearch alignment for GI: 254780261 and conserved domain: TIGR03626
>TIGR03626 L3_arch archaeal ribosomal protein L3. This model describes exclusively the archaeal class of ribosomal protein L3. A separate model (TIGR03625) describes the bacterial/organelle form, and both belong to pfam00297. Eukaryotic proteins are excluded from this model.
Probab=100.00 E-value=0 Score=380.43 Aligned_cols=212 Identities=29% Similarity=0.413 Sum_probs=171.6
Q ss_pred CCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCC--CEEEEECCCCCC----CCCCCCCHH
Q ss_conf 4268996584516988987----------922689991797899997067788--612564055556----431571011
Q gi|254780261|r 3 SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNG--YMAVQVGAGEAK----VKNVSKPMR 66 (221)
Q Consensus 3 ~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdG--Y~Avqvg~~~~k----~k~~~Kp~~ 66 (221)
T Consensus 36 ~gF~GYKAGMTHv~~~ddrp~S~~~gkEi~~pVTViEtPPm~V~gvr~Y~~t~~Gl~~l~evwa~~l~~e~~Rr~~~~k~ 115 (330)
T TIGR03626 36 QGFAGYKAGMTHVIMVDDRKNSPTEGKEISVPVTVLEAPPLRVAAIRAYGKDPYGLKVLTEVWANNLDKELSRKITLPKN 115 (330)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCC
T ss_conf 78735415765999955889987689378876777506985999998776679986888999714778777750144545
Q ss_pred HHHHH---------------------------HCCCCCC-EEEEEECCCC--HHHH-----HCCCCEEE-EEECCCCEEE
Q ss_conf 25764---------------------------0356341-0365320651--1211-----00341000-1230253265
Q gi|254780261|r 67 GFFSS---------------------------VNVSPKK-KLFEFRVQKD--DDLL-----PVGSVFSP-SYFTVGQLVD 110 (221)
Q Consensus 67 G~fkK---------------------------~g~~pk~-~l~Efrv~~~--~~~~-----~vG~~i~~-~~F~~Gq~VD 110 (221)
T Consensus 116 ~~~~~~~e~~~~~~~~~~~~vRvi~~Tqp~~~~g~~kKkp~imEi~v~Ggs~~~k~~~a~~~LgKeI~v~dvF~~g~~vD 195 (330)
T TIGR03626 116 YDVEEKLEKIEELLENDADDVRLIVHTQPKLVTGVPKKKPEIMEIRIGGGSVEERFEYALSILGKEISVSDVFKEGQLVD 195 (330)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEHHHHCCCCCEEE
T ss_conf 57578899998775377618999997252212686556762899950689989999999998488672467026885689
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEEECC-----
Q ss_conf 789875343364057504421233357745434666555556752242267666523773336516589998076-----
Q gi|254780261|r 111 VTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDDK----- 185 (221)
Q Consensus 111 V~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~id~e----- 185 (221)
T Consensus 196 v~gvTKGKGfqG~vkR~g~~~~~~~h~~~k~~R~~gsiG~-~~p~rV~~~v~~aGq~G~h~rT~~Nk~I~kig~~~~~It 274 (330)
T TIGR03626 196 VIAVTKGKGFQGVVKRWGVKLLPRKHKRRKGGRHIGTLGP-WTPSRVRWTVPQAGQMGYHQRTEYNKRILKIGEDGDEIT 274 (330)
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCC
T ss_conf 9975304542111575243457741346656545763378-888634437776876787445774338999768886035
Q ss_pred ------------CCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf ------------8989997157458887099996031467785
Q gi|254780261|r 186 ------------RGLILVKGCVPGAKKNSWILVRDSFKSAVNC 216 (221)
Q Consensus 186 ------------~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~ 216 (221)
T Consensus 275 P~GGF~hYG~V~~~~ilikGsvpGp~Kr-~i~lr~~irp~~~~ 316 (330)
T TIGR03626 275 PKGGFVNYGLVRNDYVLIKGSVPGPSKR-LIRLRDAIRPPKPP 316 (330)
T ss_pred CCCCCCCCCEECCCEEEEECCCCCCCCC-EEEEECCCCCCCCC
T ss_conf 6788654525637789997256887661-38960013688765