HHsearch alignment of GI: 254780261 and MMDB domain: 1vq8_B_
>1vq8_B (B:) 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=0 Score=504.62 Aligned_cols=215 Identities=21% Similarity=0.240 Sum_probs=190.0
Q ss_pred CCCCEEEEECCCCEEECCC----------CCEEEEEEEEECCCEEEEEEECCCCCCEEEEECC------CCCCCCCCCCC
Q ss_conf 9442689965845169889----------8792268999179789999706778861256405------55564315710
Q gi|254780261|r 1 MRSGVVARKLGMTCVYNIE----------GRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGA------GEAKVKNVSKP 64 (221)
Q Consensus 1 mr~Glig~KiGMT~if~e~----------G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~------~~~k~k~~~Kp 64 (221)
|+.||+|+|+||||+|++| |..+||||||++||.|++++++|+|||+|+||++ ++.+++++++|
T Consensus 38 ~~~G~~g~K~GMT~i~~~d~~~~s~~~~~g~~~pVTViev~p~~V~~ir~~~~dgy~a~~lg~~~~~~~~~~~~k~~~k~ 117 (338)
T 1vq8_B 38 GVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVP 117 (338)
T ss_dssp EECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCC
T ss_pred CEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCCHH
T ss_conf 33788687147549997279757754674255345799837963888876603897339999997024542430145643
Q ss_pred HHHHHHHHCCCCC----------------------------------------CEEEEEECCCCHHHHHCCCCEEEEEEC
Q ss_conf 1125764035634----------------------------------------103653206511211003410001230
Q gi|254780261|r 65 MRGFFSSVNVSPK----------------------------------------KKLFEFRVQKDDDLLPVGSVFSPSYFT 104 (221)
Q Consensus 65 ~~G~fkK~g~~pk----------------------------------------~~l~Efrv~~~~~~~~vG~~i~~~~F~ 104 (221)
+.|||++++.++. ++++||+++. +..+++|+.+.+|+|+
T Consensus 118 ~~g~~~k~~~~~~~~~~~~~~~~~~v~~~t~~~~~~~~~~kk~~~~e~~v~~~~~~~ef~~~~-~~~~~~g~~~~~dvF~ 196 (338)
T 1vq8_B 118 EDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHAL-DIVEDGGEHAMNDIFR 196 (338)
T ss_dssp SSCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHH-HHHHHTCEECSTTTCC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH-HHCCCCCEEEEECCCC
T ss_conf 343743413677666652563037877410443454434567631577505874556433333-3203452788321103
Q ss_pred CCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEE--
Q ss_conf 253265789875343364057504421233357745434666555556752242267666523773336516589998--
Q gi|254780261|r 105 VGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV-- 182 (221)
Q Consensus 105 ~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~i-- 182 (221)
+||+|||+|+|||||||||||||||+++|+|||++ .||++||+|++|+|+|||||++||||||+++||++||+|++|
T Consensus 197 ~Gq~VDV~gvTKGKGFqGviKRwgf~g~p~sHg~~-~~~R~gg~gg~~~pgRV~~g~kmaGqmG~~~rT~~Nl~IlkI~~ 275 (338)
T 1vq8_B 197 AGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQ-GWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGE 275 (338)
T ss_dssp TTCEEEEEEECCCCCEECHHHHHCCCCCCGGGGSS-SCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECC
T ss_conf 89889999986155665616864543556546777-62236624677889735057645874367508986879999736
Q ss_pred --------------ECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf --------------076898999715745888709999603146778532
Q gi|254780261|r 183 --------------DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKG 218 (221)
Q Consensus 183 --------------d~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k~ 218 (221)
|+|+|||||||||||| ++++|+||||+++......
T Consensus 276 ~~~i~~~gGf~~yg~v~~~~ilvkGsVPG~-~k~~V~ir~aik~~~~~~~ 324 (338)
T 1vq8_B 276 GDEPTVDGGFVNYGEVDGPYTLVKGSVPGP-DKRLVRFRPAVRPNDQPRL 324 (338)
T ss_dssp ESSSCCTTCBTTTBCCCEEEEEEESCCSSC-TTCEEEEEECSSCSSCCCC
T ss_pred CCCCCCCCCCEEEEECCCCEEEEEECCCCC-CCCEEEEECCCCCCCCCCC
T ss_conf 655335687104434138889998356588-9958999301267887667