HHsearch alignment of GI: 254780261 and MMDB domain: 2j01_E_
>2j01_E (E:) 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=535.95 Aligned_cols=205 Identities=45% Similarity=0.745 Sum_probs=198.4
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
.+||||+|+||||+|| ||.++||||||++||.|+++++.|+|||+|+|||+++.++++++||+++||+|++++|++++.
T Consensus 1 m~g~ig~K~GMt~i~~-~g~~~pvTvl~v~p~~Vv~~k~~~~~gy~av~vg~~~~~~~~~~Kp~~g~~~k~g~~~k~~~~ 79 (206)
T 2j01_E 1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR 79 (206)
T ss_dssp CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 9448599438825984-899896899995887899999541699533787452023323120013652335654220366
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
||++++ ++|+++++|+|++||+|||+|+|||||||||||||||+++|+|||+|++||++||||++++|+|||||+
T Consensus 80 ef~~~~-----~~g~~l~~~~F~~Gq~VdV~g~TkGKGFqGviKR~gf~g~p~sHG~sk~hR~~GsiG~~~~pgrV~~gk 154 (206)
T 2j01_E 80 EIRDFN-----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154 (206)
T ss_dssp CCTTCC-----CCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred EEECCC-----CCCCEEEEEEEECCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 552144-----554157678986674688889984246676256544266850015774310355545667566698456
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 6665237733365165899980768989997157458887099996031467
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221)
|||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+.
T Consensus 155 km~G~mG~~~~T~~Nl~I~~id~~~n~i~vkGsVPG~-~~~~v~i~~a~k~~ 205 (206)
T 2j01_E 155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 (206)
T ss_dssp CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred CCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECEECC
T ss_conf 3578658746986598999996889999996257589-99899998541147