HHsearch alignment of GI: 254780261 and MMDB domain: 2j01_E_

>2j01_E (E:) 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=535.95  Aligned_cols=205  Identities=45%  Similarity=0.745  Sum_probs=198.4

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
                      .+||||+|+||||+|| ||.++||||||++||.|+++++.|+|||+|+|||+++.++++++||+++||+|++++|++++.
T Consensus         1 m~g~ig~K~GMt~i~~-~g~~~pvTvl~v~p~~Vv~~k~~~~~gy~av~vg~~~~~~~~~~Kp~~g~~~k~g~~~k~~~~   79 (206)
T 2j01_E            1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR   79 (206)
T ss_dssp             CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred             CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             9448599438825984-899896899995887899999541699533787452023323120013652335654220366


Q ss_pred             EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r   82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK  161 (221)
Q Consensus        82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk  161 (221)
                      ||++++     ++|+++++|+|++||+|||+|+|||||||||||||||+++|+|||+|++||++||||++++|+|||||+
T Consensus        80 ef~~~~-----~~g~~l~~~~F~~Gq~VdV~g~TkGKGFqGviKR~gf~g~p~sHG~sk~hR~~GsiG~~~~pgrV~~gk  154 (206)
T 2j01_E           80 EIRDFN-----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK  154 (206)
T ss_dssp             CCTTCC-----CCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred             EEECCC-----CCCCEEEEEEEECCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             552144-----554157678986674688889984246676256544266850015774310355545667566698456


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf             6665237733365165899980768989997157458887099996031467
Q gi|254780261|r  162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA  213 (221)
Q Consensus       162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~  213 (221)
                      |||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+.
T Consensus       155 km~G~mG~~~~T~~Nl~I~~id~~~n~i~vkGsVPG~-~~~~v~i~~a~k~~  205 (206)
T 2j01_E          155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA  205 (206)
T ss_dssp             CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred             CCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECEECC
T ss_conf             3578658746986598999996889999996257589-99899998541147