HHsearch alignment of GI: 254780261 and MMDB domain: 3bbo_F_
>3bbo_F (F:) Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum}
Probab=100.00 E-value=0 Score=553.41 Aligned_cols=215 Identities=39% Similarity=0.639 Sum_probs=204.3
Q ss_pred CCCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEE-EEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 944268996584516988987922689991797899-9970677886125640555564315710112576403563410
Q gi|254780261|r 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVV-VHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKK 79 (221)
Q Consensus 1 mr~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv-~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~ 79 (221)
|++||||+|+||||+||+||.++||||||++||.|+ ++++.|+|||+|+|+|+++.++++++||++|||+|++++|+++
T Consensus 42 ~~~g~~g~K~GMt~i~~~~g~~~pvTvle~~p~~Vv~~~k~~e~~gy~a~~~g~~~~~~~~~~k~~~g~~~k~~~~~k~~ 121 (259)
T 3bbo_F 42 AGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRH 121 (259)
T ss_dssp ---------------------------------------------------------CCSSCCHHHHTTCSSCCCCCSSC
T ss_pred CCEEEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCEE
T ss_conf 53479999657867788899398679999689969988603566784368998887245344654466422227665212
Q ss_pred EEEEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 36532065112110034100012302532657898753433640575044212333577454346665555567522422
Q gi|254780261|r 80 LFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFK 159 (221)
Q Consensus 80 l~Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~k 159 (221)
+.|||+++.+..++.++.+.+|+|++||+|||+|+|||||||||||||||+++|+||| |++||++||||++++||||||
T Consensus 122 ~~ef~v~~~a~~~~g~~~~~~~~F~~Gq~VDV~g~tkGKGFqGviKR~gf~g~p~sHg-sk~hR~~GsiG~~~~PgRV~~ 200 (259)
T 3bbo_F 122 LQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHG-SKSHRQLGSIGAGTTPGRVYK 200 (259)
T ss_dssp CCCCCSCCCCTTTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSC-SSTTTSCCCCSCSSCCTTTTT
T ss_pred EEEEECCCCCCCCCCCEECHHHHCCCCCEEEEEEEEECCCCCCHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEC
T ss_conf 1000024322224323012899534886687589984633566220435213455667-754304764256777874801
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 6766652377333651658999807689899971574588870999960314677853
Q gi|254780261|r 160 NKKMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCK 217 (221)
Q Consensus 160 Gkkm~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k 217 (221)
|+|||||||++++|++||+|++||+|+|||+|||||||| ++++|+||+|+|+..+..
T Consensus 201 g~km~G~mG~~~~T~~Nl~I~ki~~~~n~i~vkGsVPG~-~~~~V~ir~a~k~~~~~~ 257 (259)
T 3bbo_F 201 GKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGK-PGNLLRIAPAKIVGKNIP 257 (259)
T ss_dssp TSCCCCCCCCCBCCCCCCCEEEEETTTTEEEECSCCSSC-SSSCCCCCCCCCC-----
T ss_pred CCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCCCC-CCCEEEEEECCCCCCCCC
T ss_conf 776587668854888467999983889889996168689-998899987875788999