HHsearch results for GI: 254780261 and protein with PDBid: 2j01_E

>2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2 PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00  E-value=0  Score=559.02  Aligned_cols=205  Identities=45%  Similarity=0.745  Sum_probs=197.3

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
                      +.||||+|+||||+|| ||.++||||||++||+|+++||.|+|||+|+||+|++.++++++||++|||+|++++|++++.
T Consensus         1 m~Glig~KiGMT~if~-~g~~vpVTVlev~p~~V~~~kt~ekdGY~avqlg~~~~k~~~~~K~~~g~~~k~~~~~~~~~~   79 (206)
T 2j01_E            1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR   79 (206)
T ss_dssp             CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred             CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCCCCCEEEE
T ss_conf             9458699448844983-899896899995797899988102689421677453302331485232642226898526788


Q ss_pred             EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r   82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK  161 (221)
Q Consensus        82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk  161 (221)
                      |||...     +.|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+|++|||||||+
T Consensus        80 e~~~~~-----~~~~~i~~~~F~~G~~VDV~g~skGKGFqGv~KR~gf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk  154 (206)
T 2j01_E           80 EIRDFN-----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK  154 (206)
T ss_dssp             CCTTCC-----CCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred             EEECCC-----CCCCEEEEHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             730355-----777698603306886268888882553556355167778986568995376677777788786276898


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf             6665237733365165899980768989997157458887099996031467
Q gi|254780261|r  162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA  213 (221)
Q Consensus       162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~  213 (221)
                      |||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+.
T Consensus       155 kMaG~mG~~~~T~~nl~V~~id~e~nli~vkGsVPG~-~~~~V~ir~a~k~~  205 (206)
T 2j01_E          155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA  205 (206)
T ss_dssp             CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECEECC
T ss_conf             7688758802887188999996879999996167689-99899998443247