HHsearch results for GI: 254780261 and protein with PDBid: 2j01_E
>2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2 PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=0 Score=559.02 Aligned_cols=205 Identities=45% Similarity=0.745 Sum_probs=197.3
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
+.||||+|+||||+|| ||.++||||||++||+|+++||.|+|||+|+||+|++.++++++||++|||+|++++|++++.
T Consensus 1 m~Glig~KiGMT~if~-~g~~vpVTVlev~p~~V~~~kt~ekdGY~avqlg~~~~k~~~~~K~~~g~~~k~~~~~~~~~~ 79 (206)
T 2j01_E 1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR 79 (206)
T ss_dssp CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCCCCCEEEE
T ss_conf 9458699448844983-899896899995797899988102689421677453302331485232642226898526788
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
|||... +.|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+|++|||||||+
T Consensus 80 e~~~~~-----~~~~~i~~~~F~~G~~VDV~g~skGKGFqGv~KR~gf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk 154 (206)
T 2j01_E 80 EIRDFN-----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154 (206)
T ss_dssp CCTTCC-----CCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred EEECCC-----CCCCEEEEHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 730355-----777698603306886268888882553556355167778986568995376677777788786276898
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 6665237733365165899980768989997157458887099996031467
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221)
|||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+.
T Consensus 155 kMaG~mG~~~~T~~nl~V~~id~e~nli~vkGsVPG~-~~~~V~ir~a~k~~ 205 (206)
T 2j01_E 155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 (206)
T ss_dssp CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECEECC
T ss_conf 7688758802887188999996879999996167689-99899998443247