HHsearch results for GI: 254780261 and protein with PDBid: 2zkr_b
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=475.41 Aligned_cols=209 Identities=21% Similarity=0.249 Sum_probs=176.1
Q ss_pred CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCCC--------------CC
Q ss_conf 44268996584516988987----------9226899917978999970677886125640555--------------56
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGE--------------AK 57 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~--------------~k 57 (221)
..||||+|+||||+|++|++ ++||||||++||.|+|+||+|+|||.|+|||+.+ ..
T Consensus 43 l~GfiG~K~GMThVf~~d~r~~S~~~gkgi~vPVTVIE~pP~~V~~vktye~dgY~a~qlg~v~a~~~~~~~~rr~~k~~ 122 (403)
T 2zkr_b 43 LTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNW 122 (403)
T ss_dssp GGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEECCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCS
T ss_pred EEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCC
T ss_conf 57886880374389963687687557875699789998788589999746406985479899860015346543320000
Q ss_pred CCCCCCCHHHHHHHHC----------------------------------CC-CCCEEEEEECCCCH--H-----HHHCC
Q ss_conf 4315710112576403----------------------------------56-34103653206511--2-----11003
Q gi|254780261|r 58 VKNVSKPMRGFFSSVN----------------------------------VS-PKKKLFEFRVQKDD--D-----LLPVG 95 (221)
Q Consensus 58 ~k~~~Kp~~G~fkK~g----------------------------------~~-pk~~l~Efrv~~~~--~-----~~~vG 95 (221)
.++.+++..+++++.. ++ .+.+|.||++...+ + ...+|
T Consensus 123 ~~~~~k~~~k~~kk~~~~~g~~~~e~~~~~~k~~~~~~rvi~~T~p~~~~~~kKk~~l~E~~v~Gg~~~e~~~~a~~~~g 202 (403)
T 2zkr_b 123 HKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202 (403)
T ss_dssp SCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSCEEEEECCGGGSSCSCCCCCCEEEEBCSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 00000233100023344310345667666542010278887511431146666776427997378877776556764047
Q ss_pred CCEEE-EEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE
Q ss_conf 41000-12302532657898753433640575044212333577454346665555567522422676665237733365
Q gi|254780261|r 96 SVFSP-SYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTV 174 (221)
Q Consensus 96 ~~i~~-~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~ 174 (221)
++|.+ |+|++||+|||+|+||||||||+||||||+++| |++|++||++||||+ |+|+|||||++||||||+++||+
T Consensus 203 kei~v~dvF~~Ge~VDV~GvTKGKGFqGvVKR~Gf~~~p--hk~sk~hR~~GSiG~-~~P~RV~kg~kmaGqmG~~~rT~ 279 (403)
T 2zkr_b 203 QQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP--RKTHRGLRKVACIGA-WHPARVAFSVARAGQKGYHHRTE 279 (403)
T ss_dssp SCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCCC--SSTTTTTTCCSCSSC-SSSCSCCTTSCCCEEEECCEEEE
T ss_pred CEEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 536534542289879999876035544426743505688--778987727886579-99986436875577779965888
Q ss_pred CCCEEEEEEC-------------------------------------CCCEEEEECCCCCCCCCEEEEEEECCCCCC
Q ss_conf 1658999807-------------------------------------689899971574588870999960314677
Q gi|254780261|r 175 KNLEVVSVDD-------------------------------------KRGLILVKGCVPGAKKNSWILVRDSFKSAV 214 (221)
Q Consensus 175 ~nl~i~~id~-------------------------------------e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~ 214 (221)
+||+|++||. ++||||||||||||.+ .+|.||+|+++..
T Consensus 280 ~Nl~IvkIg~~~~~~~~~~~~~~~~t~~d~~~~~i~p~GGf~~YG~V~~~~ilvKGsVPGp~k-r~v~lR~avr~~~ 355 (403)
T 2zkr_b 280 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK-RVLTLRKSLLVQT 355 (403)
T ss_dssp SCCCEEEEECCCCCCSSCCCCCTTCCCCCCSSCSCCSCCCBTTTBCCCSCEEEEESCCSSCTT-CEEECCCCC----
T ss_pred ECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCC-CEEEECHHHCCCC
T ss_conf 423899977844444442234555433345554114578866563154878999703568788-2699733305676