HHsearch results for GI: 254780261 and protein with PDBid: 3ofq_D
>3ofq_D 50S ribosomal protein L3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=0 Score=581.55 Aligned_cols=209 Identities=45% Similarity=0.741 Sum_probs=203.4
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
+.||||+|+||||+||+||+++||||||++||+|+|+||.|+|||+|+|+++++.++++++||++|||++++++|+++++
T Consensus 1 m~Glig~KvGMT~v~~~~G~~vPVTVie~~p~~V~~~kt~ekdgY~a~q~g~~~~~~k~~~Kp~~g~~~k~~~~~~~~l~ 80 (209)
T 3ofq_D 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW 80 (209)
T ss_dssp CCCEEEEECCCBCCCCSSCCCCCEEEEECCCBEEEECCCSSSSSCCEEEEECSCCCTTTCCHHHHHHHHHSCCCCCSCCE
T ss_pred CCEEEEEECCCCEEECCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHCCHHHCCCCCCCEEE
T ss_conf 91598997688448899990998799996598999998566789676898230012331685362563231667550489
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
|||+++++ .+++|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||++|+|||||||+
T Consensus 81 e~~~~~~~-~~~~G~~~~~~~F~~Gq~VDV~g~tkGKGFqGv~KR~gf~g~p~sHg~s~~hR~~Gs~G~~~~PgrV~kgk 159 (209)
T 3ofq_D 81 EFRLAEGE-EFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK 159 (209)
T ss_dssp EEECSSCC-CCSSCCCBCGGGGSSCCCCCCEECCCCCBSCCTTTSSCCCCCCSSSSCCSCSSCCCCSSCSTTTCSCCTTC
T ss_pred EEECCCHH-HCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97137655-41477632112244897689999981643444067644467985568985465887766789897388897
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 666523773336516589998076898999715745888709999603146
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKS 212 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~ 212 (221)
|||||||++++|++||+|++||+|+|||||||||||| ++++|+||+|+|+
T Consensus 160 kmaG~mG~~~~T~~Nl~Vv~id~e~n~i~vkGsVPG~-~~~~V~ir~aik~ 209 (209)
T 3ofq_D 160 KMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 (209)
T ss_dssp CCCCCBSCCCCCCTTCEEEEEETTTTEEEEESCCSSC-TTCEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCC
T ss_conf 2487458734987357999995889999997478789-9999998746359