Query gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 221 No_of_seqs 143 out of 1792 Neff 5.6 Searched_HMMs 23785 Date Tue May 24 08:23:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780261.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ofq_D 50S ribosomal protein L 100.0 0 0 581.5 15.6 209 2-212 1-209 (209) 2 2ftc_C L3MT, MRP-L3, mitochond 100.0 0 0 563.2 20.1 209 2-213 1-211 (211) 3 3bbo_F Ribosomal protein L3; l 100.0 0 0 580.0 4.3 211 1-214 42-254 (259) 4 2zjr_B 50S ribosomal protein L 100.0 0 0 557.9 16.5 210 2-218 1-210 (211) 5 2j01_E 50S ribosomal protein L 100.0 0 0 559.0 7.9 205 2-213 1-205 (206) 6 1vq8_B 50S ribosomal protein L 100.0 0 0 500.7 14.7 214 2-217 39-323 (338) 7 3jyw_C 60S ribosomal protein L 100.0 0 0 478.6 13.0 211 2-216 39-344 (362) 8 2zkr_b 60S ribosomal protein L 100.0 0 0 475.4 12.3 209 2-214 43-355 (403) 9 3kh0_A Ralgds, ralgef, RAL gua 29.6 15 0.00065 16.3 1.2 43 29-75 21-65 (140) 10 1rax_A Protein (RA-domain of R 28.2 24 0.001 15.2 2.0 48 21-68 16-65 (115) 11 1ef5_A RGL; RAS-binding domain 23.7 21 0.00088 15.6 1.0 49 23-75 8-58 (103) No 1 >3ofq_D 50S ribosomal protein L3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Probab=100.00 E-value=0 Score=581.55 Aligned_cols=209 Identities=45% Similarity=0.741 Sum_probs=203.4 Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221) +.||||+|+||||+||+||+++||||||++||+|+|+||.|+|||+|+|+++++.++++++||++|||++++++|+++++ T Consensus 1 m~Glig~KvGMT~v~~~~G~~vPVTVie~~p~~V~~~kt~ekdgY~a~q~g~~~~~~k~~~Kp~~g~~~k~~~~~~~~l~ 80 (209) T 3ofq_D 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW 80 (209) T ss_dssp CCCEEEEECCCBCCCCSSCCCCCEEEEECCCBEEEECCCSSSSSCCEEEEECSCCCTTTCCHHHHHHHHHSCCCCCSCCE T ss_pred CCEEEEEECCCCEEECCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHCCHHHCCCCCCCEEE T ss_conf 91598997688448899990998799996598999998566789676898230012331685362563231667550489 Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267 Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221) Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221) |||+++++ .+++|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||++|+|||||||+ T Consensus 81 e~~~~~~~-~~~~G~~~~~~~F~~Gq~VDV~g~tkGKGFqGv~KR~gf~g~p~sHg~s~~hR~~Gs~G~~~~PgrV~kgk 159 (209) T 3ofq_D 81 EFRLAEGE-EFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK 159 (209) T ss_dssp EEECSSCC-CCSSCCCBCGGGGSSCCCCCCEECCCCCBSCCTTTSSCCCCCCSSSSCCSCSSCCCCSSCSTTTCSCCTTC T ss_pred EEECCCHH-HCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 97137655-41477632112244897689999981643444067644467985568985465887766789897388897 Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCC Q ss_conf 666523773336516589998076898999715745888709999603146 Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKS 212 (221) Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~ 212 (221) |||||||++++|++||+|++||+|+|||||||||||| ++++|+||+|+|+ T Consensus 160 kmaG~mG~~~~T~~Nl~Vv~id~e~n~i~vkGsVPG~-~~~~V~ir~aik~ 209 (209) T 3ofq_D 160 KMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 (209) T ss_dssp CCCCCBSCCCCCCTTCEEEEEETTTTEEEEESCCSSC-TTCEEEECCCSCC T ss_pred CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCC T ss_conf 2487458734987357999995889999997478789-9999998746359 No 2 >2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Probab=100.00 E-value=0 Score=563.21 Aligned_cols=209 Identities=33% Similarity=0.547 Sum_probs=197.8 Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCC--CCCCCCCHHHHHHHHCCCCCCE Q ss_conf 44268996584516988987922689991797899997067788612564055556--4315710112576403563410 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAK--VKNVSKPMRGFFSSVNVSPKKK 79 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k--~k~~~Kp~~G~fkK~g~~pk~~ 79 (221) |+||||+|+||||+|||||.++||||||++||.|++++|.|+|+|.++||+++..+ ..+.+++.++||+|++++|+++ T Consensus 1 R~Glig~KiGMT~if~~~G~~vpVTVlev~p~~Vv~~kt~e~~~~~~~~v~~g~~~~~~~~k~k~~~g~~~k~~~~~k~~ 80 (211) T 2ftc_C 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQT 80 (211) T ss_pred CEEEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCEECCCCCCCCHHCCCHHHCCCCCCEE T ss_conf 91899996587077889996988899996288899998640458716777307500100012200104054507887603 Q ss_pred EEEEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC Q ss_conf 36532065112110034100012302532657898753433640575044212333577454346665555567522422 Q gi|254780261|r 80 LFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFK 159 (221) Q Consensus 80 l~Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~k 159 (221) ++|||++++ +.+++|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+ ++|||||| T Consensus 81 l~Efrv~~~-~~~~~G~~i~v~~F~~Gq~VdVtg~SKGKGFqGvmKRh~F~g~~~sHG~s~~hR~~GSiG~-~~pgRV~k 158 (211) T 2ftc_C 81 VKIFNITDN-AAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVAT-GDIGRVWP 158 (211) T ss_pred EEEEECCCC-CCCCCCCEEECHHHCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC T ss_conf 799963764-0102676078453448853898998758644650545676657743467765757851345-65887885 Q ss_pred CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC Q ss_conf 676665237733365165899980768989997157458887099996031467 Q gi|254780261|r 160 NKKMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221) Q Consensus 160 Gkkm~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221) |+|||||||++++|++||+|++||+|+|||||||||||| ++++|+||+|++++ T Consensus 159 GkkM~G~mG~~~~T~~nl~vv~id~e~n~i~vkGsVPG~-~~~~V~ir~a~~pa 211 (211) T 2ftc_C 159 GTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGH-KNCLVKVKDSKLPA 211 (211) T ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCCC T ss_conf 773477437725988288999995878989994168689-99899997366589 No 3 >3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} Probab=100.00 E-value=0 Score=580.02 Aligned_cols=211 Identities=39% Similarity=0.666 Sum_probs=201.0 Q ss_pred CCCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEE-EEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCE Q ss_conf 944268996584516988987922689991797899-9970677886125640555564315710112576403563410 Q gi|254780261|r 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVV-VHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKK 79 (221) Q Consensus 1 mr~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv-~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~ 79 (221) +++||||+|+||||+||+||.++||||||++||.|+ |+||.|+|||+|+||||++.++++++||++|||+|++++|+++ T Consensus 42 ~~iGliG~KvGMT~if~~~G~~vPVTViev~p~~VV~qvkt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~f~ka~~~pk~~ 121 (259) T 3bbo_F 42 AGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRH 121 (259) T ss_dssp ---------------------------------------------------------CCSSCCHHHHTTCSSCCCCCSSC T ss_pred CCEEEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCHHHHCCHHHCCCCCCEE T ss_conf 36379999668847888999299779999579969988545455894489999987355235966836702202251014 Q ss_pred EEEEECCCCHHHHHCCCCEEE-EEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 365320651121100341000-1230253265789875343364057504421233357745434666555556752242 Q gi|254780261|r 80 LFEFRVQKDDDLLPVGSVFSP-SYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVF 158 (221) Q Consensus 80 l~Efrv~~~~~~~~vG~~i~~-~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~ 158 (221) +.||+++++++ +++|++|++ |+|++||+|||+|+|||||||||||||||+|+|+||| |++||+|||||+||+||||| T Consensus 122 ~~ef~~~~~~~-~~~G~~i~v~~~F~~Gq~VDVtg~SKGKGFqGvmKRhgF~g~pasHG-~~~hR~~GSiG~~~~PgRV~ 199 (259) T 3bbo_F 122 LQEFRLQSIDG-FEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHG-SKSHRQLGSIGAGTTPGRVY 199 (259) T ss_dssp CCCCCSCCCCT-TTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSC-SSTTTSCCCCSCSSCCTTTT T ss_pred EEEEECCCCHH-CCCCCEECHHHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEC T ss_conf 44442023000-03565442899435887788799981753665235636456675678-98786688647788898581 Q ss_pred CCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCC Q ss_conf 26766652377333651658999807689899971574588870999960314677 Q gi|254780261|r 159 KNKKMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAV 214 (221) Q Consensus 159 kGkkm~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~ 214 (221) ||+|||||||++++|++||+|++||+|+|||||||||||+ +|++|+||||++... T Consensus 200 kGkkMaG~mG~~~~Tv~Nl~Vv~Id~e~nlilVkGsVPG~-~g~~V~Ir~a~~~~k 254 (259) T 3bbo_F 200 KGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGK-PGNLLRIAPAKIVGK 254 (259) T ss_dssp TTSCCCCCCCCCBCCCCCCCEEEEETTTTEEEECSCCSSC-SSSCCCCCCCCCC-- T ss_pred CCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCCCC-CCCEEEEEECCCCCC T ss_conf 5876687618853898556999982889989993168789-998899976775688 No 4 >2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E 1vp0_E Probab=100.00 E-value=0 Score=557.86 Aligned_cols=210 Identities=43% Similarity=0.710 Sum_probs=200.1 Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221) +.||||+|+||||+||+ |.++||||||++||.|+++||.|+|||+|+||+|++.++++++||+++||+|++++|++++. T Consensus 1 m~Glig~KiGMT~i~~~-g~~vpVTVlev~~~~Vv~~kt~ekdGY~avqvg~~~~~~k~~~K~~~g~~~k~~~~~~~~~~ 79 (211) T 2zjr_B 1 MKGILGTKIGMTQIWKN-DRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILR 79 (211) T ss_dssp CCEEEEEEEEEEEEEET-TEEEEEEEEECCCEEEEEEECTTTTSSCEEEEECSCCCGGGCCHHHHHHHHTTTCCCCSCEE T ss_pred CCEEEEEECCCEEEEEC-CCEEEEEEEEECCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCEE T ss_conf 94697994467048848-99898899995798899988114479720003576423323364214644313877420001 Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267 Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221) Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221) |||+. ++.|+++++++|++||+|||+|+|||||||||||||||+++|+|||+|++||+|||||++++|||||||+ T Consensus 80 ef~~~-----~~~g~~~~~~~F~~Gq~VDV~g~SKGKGFqGv~KRhgf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk 154 (211) T 2zjr_B 80 EFRGF-----APDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 154 (211) T ss_dssp EETTC-----CCSSEECSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC T ss_pred ECCCC-----CCCCCEEEHHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC T ss_conf 00124-----4678798114616998899999861541233067615577886578984354687668889887087788 Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCC Q ss_conf 666523773336516589998076898999715745888709999603146778532 Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKG 218 (221) Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k~ 218 (221) |||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+..+..+ T Consensus 155 kMaG~mG~~~~T~~nl~V~~id~~~n~i~vkGsVPG~-~~~~v~ir~a~k~~~~k~~ 210 (211) T 2zjr_B 155 RMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGA-NGGLVVLRSAAKASAAKGG 210 (211) T ss_dssp CCCEEEECCEEEEEEEEEEEEETTTTEEEEESCCSSC-TTCEEEEEBCSSCC----- T ss_pred CCCCCCCCCEEEECCCEEEEEECCCCEEEEECCCCCC-CCCEEEEEECCCCCCCCCC T ss_conf 4477447603887187899995889989995067689-9989999845467767668 No 5 >2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2 PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Probab=100.00 E-value=0 Score=559.02 Aligned_cols=205 Identities=45% Similarity=0.745 Sum_probs=197.3 Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221) +.||||+|+||||+|| ||.++||||||++||+|+++||.|+|||+|+||+|++.++++++||++|||+|++++|++++. T Consensus 1 m~Glig~KiGMT~if~-~g~~vpVTVlev~p~~V~~~kt~ekdGY~avqlg~~~~k~~~~~K~~~g~~~k~~~~~~~~~~ 79 (206) T 2j01_E 1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR 79 (206) T ss_dssp CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC T ss_pred CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCCCCCEEEE T ss_conf 9458699448844983-899896899995797899988102689421677453302331485232642226898526788 Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267 Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221) Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221) |||... +.|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+|++|||||||+ T Consensus 80 e~~~~~-----~~~~~i~~~~F~~G~~VDV~g~skGKGFqGv~KR~gf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk 154 (206) T 2j01_E 80 EIRDFN-----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154 (206) T ss_dssp CCTTCC-----CCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC T ss_pred EEECCC-----CCCCEEEEHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 730355-----777698603306886268888882553556355167778986568995376677777788786276898 Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC Q ss_conf 6665237733365165899980768989997157458887099996031467 Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221) Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221) |||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+. T Consensus 155 kMaG~mG~~~~T~~nl~V~~id~e~nli~vkGsVPG~-~~~~V~ir~a~k~~ 205 (206) T 2j01_E 155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 (206) T ss_dssp CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC- T ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECEECC T ss_conf 7688758802887188999996879999996167689-99899998443247 No 6 >1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Probab=100.00 E-value=0 Score=500.67 Aligned_cols=214 Identities=24% Similarity=0.321 Sum_probs=188.8 Q ss_pred CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCC------CCCCCCCCCCH Q ss_conf 44268996584516988987----------922689991797899997067788612564055------55643157101 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAG------EAKVKNVSKPM 65 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~------~~k~k~~~Kp~ 65 (221) ..||||+|+||||+|++||. .+||||||++||.|+|+||+|+|||.|+|||+. +...+++++|+ T Consensus 39 l~G~iG~KvGMT~v~~~d~~~~s~~~g~~i~vPVTVIe~~P~~Vv~ikt~~kdgy~avqlg~~~~~~~~~~~~r~~~~~~ 118 (338) T 1vq8_B 39 VQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE 118 (338) T ss_dssp ECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCHHHHHCCCHHH T ss_conf 37886870374599972797577545751577679998388389999736227983399999860244424310366333 Q ss_pred HHHHHHHCC----------------------------C-CCCEEEEEECCCC---------HHHHHCCCCEEE-EEECCC Q ss_conf 125764035----------------------------6-3410365320651---------121100341000-123025 Q gi|254780261|r 66 RGFFSSVNV----------------------------S-PKKKLFEFRVQKD---------DDLLPVGSVFSP-SYFTVG 106 (221) Q Consensus 66 ~G~fkK~g~----------------------------~-pk~~l~Efrv~~~---------~~~~~vG~~i~~-~~F~~G 106 (221) .++++++.. + .+.++.||++... .+.+++|++|.+ |+|++| T Consensus 119 ~~~~k~~~~~~k~~~e~~~~~~irvi~~t~p~~~~~~~~Kk~~i~E~~v~G~~~~~k~~~~~~~~~~G~ei~v~dvF~~G 198 (338) T 1vq8_B 119 DHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG 198 (338) T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTT T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEECC T ss_conf 45633301567655552464048988410642023424467201256316885334222334320357468844123089 Q ss_pred CEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEE---- Q ss_conf 3265789875343364057504421233357745434666555556752242267666523773336516589998---- Q gi|254780261|r 107 QLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV---- 182 (221) Q Consensus 107 q~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~i---- 182 (221) |+|||+|+||||||||+||||||+++|+|||++++||++||||+ |+|+|||||++|||||||++||++||+|++| T Consensus 199 ~~VDV~g~TKGKGFqGv~KR~gf~g~p~sHg~~~~hR~~GsiG~-~~PgRV~kg~kmaGqmG~~~rT~~Nl~Iv~I~~~~ 277 (338) T 1vq8_B 199 EYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD 277 (338) T ss_dssp CEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCC-SSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEES T ss_pred CEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCC T ss_conf 88999998605555201787021356865688887868834788-88985747886698868863798343999972765 Q ss_pred ------------ECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCC Q ss_conf ------------07689899971574588870999960314677853 Q gi|254780261|r 183 ------------DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCK 217 (221) Q Consensus 183 ------------d~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k 217 (221) |.|+|||||||||||| ++++|+||+|+|+....+ T Consensus 278 ~~n~~gGf~~ygd~e~n~ilVKGsVPG~-~~~~v~ir~a~k~~~~~~ 323 (338) T 1vq8_B 278 EPTVDGGFVNYGEVDGPYTLVKGSVPGP-DKRLVRFRPAVRPNDQPR 323 (338) T ss_dssp SSCCTTCBTTTBCCCEEEEEEESCCSSC-TTCEEEEEECSSCSSCCC T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCC-CCCEEEEECCCCCCCCCC T ss_conf 5445677203313138889998456588-994899930236787666 No 7 >3jyw_C 60S ribosomal protein L3; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_C Probab=100.00 E-value=0 Score=478.56 Aligned_cols=211 Identities=21% Similarity=0.201 Sum_probs=175.0 Q ss_pred CCCEEEEECCCCEEECCC----------CCEEEEEEEEECCCEEEEEEECCCCCCEEEEECC--CCCCC----------- Q ss_conf 442689965845169889----------8792268999179789999706778861256405--55564----------- Q gi|254780261|r 2 RSGVVARKLGMTCVYNIE----------GRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGA--GEAKV----------- 58 (221) Q Consensus 2 r~Glig~KiGMT~if~e~----------G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~--~~~k~----------- 58 (221) ..||||+|+||||+|++| |.++||||||++||.|+|+||+|+|||.|+||+. .+..+ T Consensus 39 l~G~iG~KvGMTqVf~~d~r~~s~~~g~g~~vPVTVIe~~P~~V~~vkt~e~dgY~avqlg~v~~~~~~~~~~r~~~~~~ 118 (362) T 3jyw_C 39 LTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNW 118 (362) T ss_dssp ESBCCEECCCBCCCCBCCSSTTCTTTTCCBCCCCEEEECCCCEEEEEECCBCCSSSSCCSCEEECSSCCSTTTTTSSCCC T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHCCCC T ss_conf 57886881474499971687787557861488778998589689999737606985478789860026445542212322 Q ss_pred -----CCCCCC------HHHHHHHHCCCCCCEEEEEEC-----------------------CCC-------HHHHHCCCC Q ss_conf -----315710------112576403563410365320-----------------------651-------121100341 Q gi|254780261|r 59 -----KNVSKP------MRGFFSSVNVSPKKKLFEFRV-----------------------QKD-------DDLLPVGSV 97 (221) Q Consensus 59 -----k~~~Kp------~~G~fkK~g~~pk~~l~Efrv-----------------------~~~-------~~~~~vG~~ 97 (221) +..+++ ..+++.+...++++++.|||+ ... .....+|++ T Consensus 119 ~~~~~~~~~k~~~~~~~~~~~~~k~~~~~k~~~~e~Rvi~~tqp~~~~~~kKkp~~~E~~v~G~~~~e~~~~a~~~lg~e 198 (362) T 3jyw_C 119 YKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKT 198 (362) T ss_dssp SSSCCCCSCCSCCSCSCTTHHHHHHHTTTTSCBCCCEEEEECCCTTSSCCCCSCCEEEEEEEESSTTHHHHGGGTTTTSB T ss_pred CCCHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCE T ss_conf 10002320310002221122166766655312206888851241003654357520011026754555566677622760 Q ss_pred EEE-EEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECC Q ss_conf 000-1230253265789875343364057504421233357745434666555556752242267666523773336516 Q gi|254780261|r 98 FSP-SYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKN 176 (221) Q Consensus 98 i~~-~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~n 176 (221) |.+ |+|++||+|||+|+||||||||+||||||+++|++| |++||++||||++ +|||||||++||||||+++||++| T Consensus 199 i~v~dvF~~G~~VDV~GvTKGKGFqGvvKR~gf~~~~~~H--~k~hR~~GSiG~~-~PgrV~kgkkmaGqmG~~~rTv~N 275 (362) T 3jyw_C 199 VAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKT--HRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSIN 275 (362) T ss_dssp CCSTTTCCTTSCEEEEEECCBCCSCCHHHHTCCCCCSSCC--SSCSSCCSCSSCS-SSSCCCTTCCCCCCCBCSEEEEEE T ss_pred EEEEEECCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 5642001699889999875475554325664657899877--8888889866899-997377898348776983698843 Q ss_pred CEEEEEECC------------------------------CCEEEEECCCCCCCCCEEEEEEECCCCCCCC Q ss_conf 589998076------------------------------8989997157458887099996031467785 Q gi|254780261|r 177 LEVVSVDDK------------------------------RGLILVKGCVPGAKKNSWILVRDSFKSAVNC 216 (221) Q Consensus 177 l~i~~id~e------------------------------~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~ 216 (221) |+|++||.+ +|||||||||||| ++++|+||+|+++.... T Consensus 276 l~v~~i~~~~~~~~~~~~~d~~~~~i~p~ggf~~YG~V~~n~ilvkGsvpG~-~~~~v~~r~~~~~~~~~ 344 (362) T 3jyw_C 276 HKIYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGN-RKRIVTLRKSLYTNTSR 344 (362) T ss_dssp ECEEEEESSSCCCCCCSSCSSCSCBSSSSSCCSSSCCCCSCEEEESSCCSCC-SSCEECCEECSSCCSCC T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCCC-CCCEEEECHHCCCCCCC T ss_conf 3999977855555543222333421134777543541427889998246578-89479981000567764 No 8 >2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=100.00 E-value=0 Score=475.41 Aligned_cols=209 Identities=21% Similarity=0.249 Sum_probs=176.1 Q ss_pred CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCCC--------------CC Q ss_conf 44268996584516988987----------9226899917978999970677886125640555--------------56 Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGE--------------AK 57 (221) Q Consensus 2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~--------------~k 57 (221) ..||||+|+||||+|++|++ ++||||||++||.|+|+||+|+|||.|+|||+.+ .. T Consensus 43 l~GfiG~K~GMThVf~~d~r~~S~~~gkgi~vPVTVIE~pP~~V~~vktye~dgY~a~qlg~v~a~~~~~~~~rr~~k~~ 122 (403) T 2zkr_b 43 LTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNW 122 (403) T ss_dssp GGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEECCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCS T ss_pred EEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHCCC T ss_conf 57886880374389963687687557875699789998788589999746406985479899860015346543320000 Q ss_pred CCCCCCCHHHHHHHHC----------------------------------CC-CCCEEEEEECCCCH--H-----HHHCC Q ss_conf 4315710112576403----------------------------------56-34103653206511--2-----11003 Q gi|254780261|r 58 VKNVSKPMRGFFSSVN----------------------------------VS-PKKKLFEFRVQKDD--D-----LLPVG 95 (221) Q Consensus 58 ~k~~~Kp~~G~fkK~g----------------------------------~~-pk~~l~Efrv~~~~--~-----~~~vG 95 (221) .++.+++..+++++.. ++ .+.+|.||++...+ + ...+| T Consensus 123 ~~~~~k~~~k~~kk~~~~~g~~~~e~~~~~~k~~~~~~rvi~~T~p~~~~~~kKk~~l~E~~v~Gg~~~e~~~~a~~~~g 202 (403) T 2zkr_b 123 HKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202 (403) T ss_dssp SCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSCEEEEECCGGGSSCSCCCCCCEEEEBCSSSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC T ss_conf 00000233100023344310345667666542010278887511431146666776427997378877776556764047 Q ss_pred CCEEE-EEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE Q ss_conf 41000-12302532657898753433640575044212333577454346665555567522422676665237733365 Q gi|254780261|r 96 SVFSP-SYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTV 174 (221) Q Consensus 96 ~~i~~-~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~ 174 (221) ++|.+ |+|++||+|||+|+||||||||+||||||+++| |++|++||++||||+ |+|+|||||++||||||+++||+ T Consensus 203 kei~v~dvF~~Ge~VDV~GvTKGKGFqGvVKR~Gf~~~p--hk~sk~hR~~GSiG~-~~P~RV~kg~kmaGqmG~~~rT~ 279 (403) T 2zkr_b 203 QQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP--RKTHRGLRKVACIGA-WHPARVAFSVARAGQKGYHHRTE 279 (403) T ss_dssp SCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCCC--SSTTTTTTCCSCSSC-SSSCSCCTTSCCCEEEECCEEEE T ss_pred CEEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEE T ss_conf 536534542289879999876035544426743505688--778987727886579-99986436875577779965888 Q ss_pred CCCEEEEEEC-------------------------------------CCCEEEEECCCCCCCCCEEEEEEECCCCCC Q ss_conf 1658999807-------------------------------------689899971574588870999960314677 Q gi|254780261|r 175 KNLEVVSVDD-------------------------------------KRGLILVKGCVPGAKKNSWILVRDSFKSAV 214 (221) Q Consensus 175 ~nl~i~~id~-------------------------------------e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~ 214 (221) +||+|++||. ++||||||||||||.+ .+|.||+|+++.. T Consensus 280 ~Nl~IvkIg~~~~~~~~~~~~~~~~t~~d~~~~~i~p~GGf~~YG~V~~~~ilvKGsVPGp~k-r~v~lR~avr~~~ 355 (403) T 2zkr_b 280 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK-RVLTLRKSLLVQT 355 (403) T ss_dssp SCCCEEEEECCCCCCSSCCCCCTTCCCCCCSSCSCCSCCCBTTTBCCCSCEEEEESCCSSCTT-CEEECCCCC---- T ss_pred ECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCC-CEEEECHHHCCCC T ss_conf 423899977844444442234555433345554114578866563154878999703568788-2699733305676 No 9 >3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A Probab=29.56 E-value=15 Score=16.34 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=29.8 Q ss_pred EECCCEEEEEEECCCCC--CEEEEECCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 91797899997067788--612564055556431571011257640356 Q gi|254780261|r 29 HLDNCQVVVHRTLDKNG--YMAVQVGAGEAKVKNVSKPMRGFFSSVNVS 75 (221) Q Consensus 29 ev~~~~Vv~~kt~ekdG--Y~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~ 75 (221) |+++|.|+.+.-...+| |.++.|...++.+.-+.++.. |.+++ T Consensus 21 Q~~d~~IIRVs~d~~~gnlYKSIllTsqDktP~VI~rAl~----Khnle 65 (140) T 3kh0_A 21 QVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMD----KHNLE 65 (140) T ss_dssp SSSCEEEEEEEEECSSSEEEEEEEEETTCBHHHHHHHHHH----HTTCT T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHH----HHCCC T ss_conf 1797289999996699848988998428867799999999----82899 No 10 >1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5 Probab=28.21 E-value=24 Score=15.21 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=34.6 Q ss_pred CEEEEEEEEECCCEEEEEEECCCCC--CEEEEECCCCCCCCCCCCCHHHH Q ss_conf 7922689991797899997067788--61256405555643157101125 Q gi|254780261|r 21 RRIPVTVLHLDNCQVVVHRTLDKNG--YMAVQVGAGEAKVKNVSKPMRGF 68 (221) Q Consensus 21 ~~vpVTViev~~~~Vv~~kt~ekdG--Y~Avqvg~~~~k~k~~~Kp~~G~ 68 (221) ...|+---++++|.|+.+.-...+| |.++.|...++.+.-+.+++..| T Consensus 16 ~~~P~~nqq~~d~~IIRVs~d~~ngnlYKSIlltsqDktP~VI~rAl~Kh 65 (115) T 1rax_A 16 SALPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKH 65 (115) T ss_dssp -------CCSSCEEEEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHH T ss_conf 77752356489708999998458984788899852886779999999980 No 11 >1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5 Probab=23.72 E-value=21 Score=15.57 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=33.9 Q ss_pred EEEEEEEECCCEEEEEEECCCCC--CEEEEECCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 22689991797899997067788--612564055556431571011257640356 Q gi|254780261|r 23 IPVTVLHLDNCQVVVHRTLDKNG--YMAVQVGAGEAKVKNVSKPMRGFFSSVNVS 75 (221) Q Consensus 23 vpVTViev~~~~Vv~~kt~ekdG--Y~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~ 75 (221) .|+--=|+++|.|+.+.-...+| |.++.|...++.+.-+.++.. |.+++ T Consensus 8 ~p~~~qq~~d~~IIRVs~d~~~gn~YKSIlltsqDktP~VI~rAl~----Khnl~ 58 (103) T 1ef5_A 8 PPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMS----KHNLE 58 (103) T ss_dssp --------CCCCCEEEEESSCSSCCCCCBCCSSCCCTHHHHHHHTT----TTTCC T ss_pred CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHH----HHCCC T ss_conf 7510265898389999973699858888998528857799999999----81899 Done!