HHSEARCH alignment of GI: 254780261 and SCOP domain: d1vqob1

Alignment
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=0  Score=504.66  Aligned_cols=213  Identities=24%  Similarity=0.320  Sum_probs=186.5

Q ss_pred             CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCCC------CCCCCCCCCH
Q ss_conf             44268996584516988987----------9226899917978999970677886125640555------5643157101
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGE------AKVKNVSKPM   65 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~------~k~k~~~Kp~   65 (221)
                      ..||||+|+||||+|++||+          .+||||||++||+|+|+||.|+|||+|+|||+.+      ...+.+++|+
T Consensus        38 ~~G~iG~KvGMT~v~~~d~~~~S~~~gk~i~vPVTVIe~~p~~V~~vkt~e~dgy~a~qlg~~~~~~~~~~~~r~~~~~~  117 (337)
T d1vqob1          38 VQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE  117 (337)
T ss_dssp             ECCEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHCCCCHHH
T ss_conf             27997981474499970798587546743676668998479608888877227984399899970246414301455322


Q ss_pred             HHHHHHHC----------------------------CC-CCCEEEEEECCCC---------HHHHHCCCCEEE-EEECCC
Q ss_conf             12576403----------------------------56-3410365320651---------121100341000-123025
Q gi|254780261|r   66 RGFFSSVN----------------------------VS-PKKKLFEFRVQKD---------DDLLPVGSVFSP-SYFTVG  106 (221)
Q Consensus        66 ~G~fkK~g----------------------------~~-pk~~l~Efrv~~~---------~~~~~vG~~i~~-~~F~~G  106 (221)
                      ..+++++.                            +. .+.++.||++...         .+.+++|++|++ |+|++|
T Consensus       118 ~~~~k~~~~~~k~~~~~~~~~~vrvi~~tqp~~~~~~~~KKp~v~E~~v~Gg~~~e~~~~~~~~~~~G~ei~v~dvF~~G  197 (337)
T d1vqob1         118 DHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG  197 (337)
T ss_dssp             SCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEESSCHHHHHHHHHHHHHHTCEECGGGTCCTT
T ss_pred             CCCHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHEECCC
T ss_conf             44633300466555552564137888620454454544466101256326874555444444420246378701301289


Q ss_pred             CEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEE----
Q ss_conf             3265789875343364057504421233357745434666555556752242267666523773336516589998----
Q gi|254780261|r  107 QLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV----  182 (221)
Q Consensus       107 q~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~i----  182 (221)
                      |+|||+|+||||||||+||||||+++|+|||++++||++||||+ |+|+|||||++||||||+++||++||+|++|    
T Consensus       198 ~~VDV~g~TKGKGFqGvvKR~gf~~~p~sHg~~~~hR~~GsiG~-~~PgRV~kg~kmaGqmG~~~rT~~Nl~IvkI~~~~  276 (337)
T d1vqob1         198 EYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD  276 (337)
T ss_dssp             CEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCC-SSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCEEEECCEEEEECCCC
T ss_conf             88999998526566551676355345654677762248855677-88874404653488658864798576999974665


Q ss_pred             ------------ECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             ------------0768989997157458887099996031467785
Q gi|254780261|r  183 ------------DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNC  216 (221)
Q Consensus       183 ------------d~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~  216 (221)
                                  |.|+|||||||||||| ++++|+||+|+|+..+.
T Consensus       277 ~i~~~gGf~~ygdve~~~ilVKGsVPG~-~~~~V~ir~aik~~~~~  321 (337)
T d1vqob1         277 EPTVDGGFVNYGEVDGPYTLVKGSVPGP-DKRLVRFRPAVRPNDQP  321 (337)
T ss_dssp             TTCCTTCBTTTBCCCEEEEEEESCCSSC-TTCEEEEEECSSCSSCC
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCC-CCCEEEEECCCCCCCCC
T ss_conf             5345687104434138889997356588-99589993002678876


SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]