HHSEARCH alignment of GI: 254780261 and SCOP domain: d2gycb1

Alignment
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=553.18  Aligned_cols=209  Identities=45%  Similarity=0.741  Sum_probs=202.8

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
                      ++||||+|+||||+||+||+++||||||++||+|+++||.|+|||+|+|+++++.++++++||+++||++++++|+++++
T Consensus         1 m~Glig~KiGMT~v~~~~G~~vpVTVle~~p~~V~~vkt~~kdgy~a~~~~~~~~~~k~~~K~~~g~~~k~~~~~~~~~~   80 (209)
T d2gycb1           1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW   80 (209)
T ss_dssp             CCCCEEEEEEEEECCCSSSCCCEEEEEECCCEECCCEEEEEEETTEEEEEEEECSSCHHHHHHHHHHTTTTCEEEEECCC
T ss_pred             CCEEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHCCHHHHCCCCCCEEE
T ss_conf             91476996388368889996998899993798999999524578601675122011342796584661131012221254


Q ss_pred             EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r   82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK  161 (221)
Q Consensus        82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk  161 (221)
                      ||++++++ .+++|+++++|+|++||+|||+|+||||||||+||||||+++|+|||.|++||++||+|++++|||||||+
T Consensus        81 e~~~~~~~-~~~~G~~~~~~~F~~Gq~VDV~g~TKGKGFqGv~KR~gf~g~~~sHg~~~~~r~~gs~g~~~~PgrV~~g~  159 (209)
T d2gycb1          81 EFRLAEGE-EFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK  159 (209)
T ss_dssp             SSSCCSTH-HHHTSEECHHHHCCTTCEEEEEEECCCCCSCCSTTTTCCCCCCGGGTSSSCCSCCSCSSSSSSSCCCCSSS
T ss_pred             EECCCCHH-HHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEECC
T ss_conf             30256467-62257620001362474588778775401577413435335675467762012676665557587285235


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf             666523773336516589998076898999715745888709999603146
Q gi|254780261|r  162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKS  212 (221)
Q Consensus       162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~  212 (221)
                      +||||||+++||++||+|++||+|+|||+|||||||| ++++|+||+|+|+
T Consensus       160 ~maG~mG~~~~T~~n~~I~~Id~~~n~i~vkGsVPG~-~~~~v~ir~aika  209 (209)
T d2gycb1         160 KMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGA-TGSDLIVKPAVKA  209 (209)
T ss_dssp             CCCCCCCCCEEEEEEEEEEECCSSSSEEEEESCCSSC-TTCEEECCBCSCC
T ss_pred             CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCC
T ss_conf             4587517864888568999994889999998568689-9999999746459


SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Escherichia coli [TaxId: 562]