HHSEARCH alignment of GI: 254780261 and SCOP domain: d2j01e1

Alignment
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=542.99  Aligned_cols=205  Identities=45%  Similarity=0.738  Sum_probs=196.8

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
                      +.||||+|+||||+|| ||.++||||||++||+|+++||.|+|||+|+||++++.+.++++||++++|++++..+++++.
T Consensus         1 m~GliG~KiGMT~i~~-~g~~vpVTVlev~p~~Vv~vkt~ekdgy~avqlg~~~~~~~~~~k~~~g~~~k~~~~~~~~~~   79 (205)
T d2j01e1           1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR   79 (205)
T ss_dssp             CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred             CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             9469799548756993-899897899995897999999312478721242034411333330003541235543110243


Q ss_pred             EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r   82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK  161 (221)
Q Consensus        82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk  161 (221)
                      ||+..     ++.|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||+|+|++|+|||||+
T Consensus        80 e~~~~-----~~~g~~l~~~~F~~Gq~VdVtg~TkGKGFqGv~KR~gf~g~p~sHg~s~~hR~~Gs~g~~~~pgrV~~g~  154 (205)
T d2j01e1          80 EIRDF-----NPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK  154 (205)
T ss_dssp             CCTTC-----CCCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred             EEECC-----CCCCCEEEEEEEECCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             22113-----3444404566761785589889984136676134243366764357762012445555567675498614


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf             6665237733365165899980768989997157458887099996031467
Q gi|254780261|r  162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA  213 (221)
Q Consensus       162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~  213 (221)
                      ||||||||+++|++||+|++||+|+|||||||||||| ++++|+||||+|++
T Consensus       155 km~G~mG~~~~T~~nl~i~~id~~~n~i~vkGsVPG~-~~~~v~ir~a~k~~  205 (205)
T d2j01e1         155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA  205 (205)
T ss_dssp             CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred             CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCCC
T ss_conf             5577517851887178999996879999997267589-99899998541179


SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Thermus thermophilus [TaxId: 274]