HHSEARCH alignment of GI: 254780261 and SCOP domain: d2zjrb1

Alignment
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=565.22  Aligned_cols=205  Identities=43%  Similarity=0.725  Sum_probs=197.1

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
                      +.||||+|+||||+||+ |.++||||||++||.|+++||.|+|||+|+||++++.++++++||++|||+|++++|++++.
T Consensus         1 m~Glig~KiGMT~i~~~-g~~vpVTVle~~p~~V~~~kt~ekdGY~avqvg~~~~~~k~~~K~~~g~~~k~~~~~~~~~~   79 (205)
T d2zjrb1           1 MKGILGTKIGMTQIWKN-DRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILR   79 (205)
T ss_dssp             CCEEEEEEEEEEEEEET-TEEEEEEEEECCCEEEEEEECTTTTSSCEEEEECSCCCGGGCCHHHHHHHHTTTCCCCSCEE
T ss_pred             CCEEEEEECCCEEEEEC-CCEEEEEEEEECCCEEEEEEEECCCCCEEEEECCEEECCCCCCCCCCCCEECCCCCCCEEEE
T ss_conf             94698996255258859-99899899996788899988203579766430201411100132215606002444210232


Q ss_pred             EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r   82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK  161 (221)
Q Consensus        82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk  161 (221)
                      |||.+.     +.|+++++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+|++|||||||+
T Consensus        80 ef~~~~-----~~g~~~~~~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kGk  154 (205)
T d2zjrb1          80 EFRGFA-----PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK  154 (205)
T ss_dssp             EETTCC-----CSSEECSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC
T ss_pred             ECCCCC-----CCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             012345-----665166557530898899999860446666057611055753246875211565435667676595377


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf             6665237733365165899980768989997157458887099996031467
Q gi|254780261|r  162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA  213 (221)
Q Consensus       162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~  213 (221)
                      |||||||++++|++||+|++||+|+|||||||||||| +|++|+||||+|++
T Consensus       155 kMaG~mG~~~~Tv~nl~V~~id~e~nli~vkGsVPG~-~~~~V~ir~a~k~s  205 (205)
T d2zjrb1         155 RMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGA-NGGLVVLRSAAKAS  205 (205)
T ss_dssp             CCCEEEECCEEEEEEEEEEEEETTTTEEEEESCCSSC-TTCEEEEEBCSSCC
T ss_pred             CCCCCCCCEEEEEECCEEEEEECCCCEEEEECCCCCC-CCCEEEEEECCCCC
T ss_conf             6688346607988377999995889999996067689-99899998442279


SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Deinococcus radiodurans [TaxId: 1299]