Query gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 221
No_of_seqs 143 out of 1792
Neff 5.6
Searched_HMMs 13730
Date Tue May 24 07:40:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780261.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrb1 b.43.3.2 (B:1-205) Rib 100.0 0 0 565.2 16.5 205 2-213 1-205 (205)
2 d2gycb1 b.43.3.2 (B:1-209) Rib 100.0 0 0 553.2 9.4 209 2-212 1-209 (209)
3 d2j01e1 b.43.3.2 (E:1-205) Rib 100.0 0 0 543.0 7.7 205 2-213 1-205 (205)
4 d1vqob1 b.43.3.2 (B:1-337) Rib 100.0 0 0 504.7 16.0 213 2-216 38-321 (337)
5 d1ltla_ b.40.4.11 (A:) DNA rep 21.8 22 0.0016 14.0 2.6 38 79-116 170-217 (239)
6 d1rlfa_ d.15.1.5 (A:) RalGDS-l 17.7 27 0.002 13.5 3.0 44 30-77 2-48 (90)
7 d1d2sa_ b.29.1.4 (A:) Sex horm 17.6 25 0.0018 13.7 1.5 19 118-136 141-159 (170)
8 d1vpza_ b.151.1.1 (A:) Carbon 17.3 28 0.002 13.4 4.4 28 5-35 5-32 (57)
9 d1h30a1 b.29.1.4 (A:261-451) G 17.3 20 0.0014 14.3 0.9 12 79-90 61-72 (191)
10 d1d4oa_ c.31.1.4 (A:) Transhyd 16.2 15 0.0011 15.0 0.1 19 107-125 130-148 (177)
No 1
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=0 Score=565.22 Aligned_cols=205 Identities=43% Similarity=0.725 Sum_probs=197.1
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
+.||||+|+||||+||+ |.++||||||++||.|+++||.|+|||+|+||++++.++++++||++|||+|++++|++++.
T Consensus 1 m~Glig~KiGMT~i~~~-g~~vpVTVle~~p~~V~~~kt~ekdGY~avqvg~~~~~~k~~~K~~~g~~~k~~~~~~~~~~ 79 (205)
T d2zjrb1 1 MKGILGTKIGMTQIWKN-DRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILR 79 (205)
T ss_dssp CCEEEEEEEEEEEEEET-TEEEEEEEEECCCEEEEEEECTTTTSSCEEEEECSCCCGGGCCHHHHHHHHTTTCCCCSCEE
T ss_pred CCEEEEEECCCEEEEEC-CCEEEEEEEEECCCEEEEEEEECCCCCEEEEECCEEECCCCCCCCCCCCEECCCCCCCEEEE
T ss_conf 94698996255258859-99899899996788899988203579766430201411100132215606002444210232
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
|||.+. +.|+++++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||+|++|||||||+
T Consensus 80 ef~~~~-----~~g~~~~~~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~g~p~sHG~s~~hR~~GsiG~~~~PgRV~kGk 154 (205)
T d2zjrb1 80 EFRGFA-----PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 154 (205)
T ss_dssp EETTCC-----CSSEECSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC
T ss_pred ECCCCC-----CCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 012345-----665166557530898899999860446666057611055753246875211565435667676595377
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 6665237733365165899980768989997157458887099996031467
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221)
|||||||++++|++||+|++||+|+|||||||||||| +|++|+||||+|++
T Consensus 155 kMaG~mG~~~~Tv~nl~V~~id~e~nli~vkGsVPG~-~~~~V~ir~a~k~s 205 (205)
T d2zjrb1 155 RMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGA-NGGLVVLRSAAKAS 205 (205)
T ss_dssp CCCEEEECCEEEEEEEEEEEEETTTTEEEEESCCSSC-TTCEEEEEBCSSCC
T ss_pred CCCCCCCCEEEEEECCEEEEEECCCCEEEEECCCCCC-CCCEEEEEECCCCC
T ss_conf 6688346607988377999995889999996067689-99899998442279
No 2
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=553.18 Aligned_cols=209 Identities=45% Similarity=0.741 Sum_probs=202.8
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
++||||+|+||||+||+||+++||||||++||+|+++||.|+|||+|+|+++++.++++++||+++||++++++|+++++
T Consensus 1 m~Glig~KiGMT~v~~~~G~~vpVTVle~~p~~V~~vkt~~kdgy~a~~~~~~~~~~k~~~K~~~g~~~k~~~~~~~~~~ 80 (209)
T d2gycb1 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW 80 (209)
T ss_dssp CCCCEEEEEEEEECCCSSSCCCEEEEEECCCEECCCEEEEEEETTEEEEEEEECSSCHHHHHHHHHHTTTTCEEEEECCC
T ss_pred CCEEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHCCHHHHCCCCCCEEE
T ss_conf 91476996388368889996998899993798999999524578601675122011342796584661131012221254
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
||++++++ .+++|+++++|+|++||+|||+|+||||||||+||||||+++|+|||.|++||++||+|++++|||||||+
T Consensus 81 e~~~~~~~-~~~~G~~~~~~~F~~Gq~VDV~g~TKGKGFqGv~KR~gf~g~~~sHg~~~~~r~~gs~g~~~~PgrV~~g~ 159 (209)
T d2gycb1 81 EFRLAEGE-EFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK 159 (209)
T ss_dssp SSSCCSTH-HHHTSEECHHHHCCTTCEEEEEEECCCCCSCCSTTTTCCCCCCGGGTSSSCCSCCSCSSSSSSSCCCCSSS
T ss_pred EECCCCHH-HHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEECC
T ss_conf 30256467-62257620001362474588778775401577413435335675467762012676665557587285235
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 666523773336516589998076898999715745888709999603146
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKS 212 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~ 212 (221)
+||||||+++||++||+|++||+|+|||+|||||||| ++++|+||+|+|+
T Consensus 160 ~maG~mG~~~~T~~n~~I~~Id~~~n~i~vkGsVPG~-~~~~v~ir~aika 209 (209)
T d2gycb1 160 KMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 (209)
T ss_dssp CCCCCCCCCEEEEEEEEEEECCSSSSEEEEESCCSSC-TTCEEECCBCSCC
T ss_pred CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCC
T ss_conf 4587517864888568999994889999998568689-9999999746459
No 3
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=542.99 Aligned_cols=205 Identities=45% Similarity=0.738 Sum_probs=196.8
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
+.||||+|+||||+|| ||.++||||||++||+|+++||.|+|||+|+||++++.+.++++||++++|++++..+++++.
T Consensus 1 m~GliG~KiGMT~i~~-~g~~vpVTVlev~p~~Vv~vkt~ekdgy~avqlg~~~~~~~~~~k~~~g~~~k~~~~~~~~~~ 79 (205)
T d2j01e1 1 MKGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR 79 (205)
T ss_dssp CCCCEEEEEEEEEEEE-TTEEEEEEEEEECCBCCCCBCCTTTTSSCCBCCCCCCCCCSTTCSCCCCCSGGGSSCCSSCCC
T ss_pred CCEEEEEECCCEEEEE-CCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 9469799548756993-899897899995897999999312478721242034411333330003541235543110243
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
||+.. ++.|++|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||+|+|++|+|||||+
T Consensus 80 e~~~~-----~~~g~~l~~~~F~~Gq~VdVtg~TkGKGFqGv~KR~gf~g~p~sHg~s~~hR~~Gs~g~~~~pgrV~~g~ 154 (205)
T d2j01e1 80 EIRDF-----NPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154 (205)
T ss_dssp CCTTC-----CCCSSCBCSTTCCTTCEECCEEECCCCCEECTTTSSCCCCCCSSSSCSSCSSCCCCCCCSTTTCSCCTTC
T ss_pred EEECC-----CCCCCEEEEEEEECCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 22113-----3444404566761785589889984136676134243366764357762012445555567675498614
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 6665237733365165899980768989997157458887099996031467
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~ 213 (221)
||||||||+++|++||+|++||+|+|||||||||||| ++++|+||||+|++
T Consensus 155 km~G~mG~~~~T~~nl~i~~id~~~n~i~vkGsVPG~-~~~~v~ir~a~k~~ 205 (205)
T d2j01e1 155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 (205)
T ss_dssp CCSEECSSCEEECCCEECCCCCTTTTCEECCSCCCSC-SSEEEECCCCCCC-
T ss_pred CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCCC
T ss_conf 5577517851887178999996879999997267589-99899998541179
No 4
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=0 Score=504.66 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=186.5
Q ss_pred CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCCC------CCCCCCCCCH
Q ss_conf 44268996584516988987----------9226899917978999970677886125640555------5643157101
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGE------AKVKNVSKPM 65 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~------~k~k~~~Kp~ 65 (221)
..||||+|+||||+|++||+ .+||||||++||+|+|+||.|+|||+|+|||+.+ ...+.+++|+
T Consensus 38 ~~G~iG~KvGMT~v~~~d~~~~S~~~gk~i~vPVTVIe~~p~~V~~vkt~e~dgy~a~qlg~~~~~~~~~~~~r~~~~~~ 117 (337)
T d1vqob1 38 VQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE 117 (337)
T ss_dssp ECCEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS
T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHCCCCHHH
T ss_conf 27997981474499970798587546743676668998479608888877227984399899970246414301455322
Q ss_pred HHHHHHHC----------------------------CC-CCCEEEEEECCCC---------HHHHHCCCCEEE-EEECCC
Q ss_conf 12576403----------------------------56-3410365320651---------121100341000-123025
Q gi|254780261|r 66 RGFFSSVN----------------------------VS-PKKKLFEFRVQKD---------DDLLPVGSVFSP-SYFTVG 106 (221)
Q Consensus 66 ~G~fkK~g----------------------------~~-pk~~l~Efrv~~~---------~~~~~vG~~i~~-~~F~~G 106 (221)
..+++++. +. .+.++.||++... .+.+++|++|++ |+|++|
T Consensus 118 ~~~~k~~~~~~k~~~~~~~~~~vrvi~~tqp~~~~~~~~KKp~v~E~~v~Gg~~~e~~~~~~~~~~~G~ei~v~dvF~~G 197 (337)
T d1vqob1 118 DHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG 197 (337)
T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEESSCHHHHHHHHHHHHHHTCEECGGGTCCTT
T ss_pred CCCHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHEECCC
T ss_conf 44633300466555552564137888620454454544466101256326874555444444420246378701301289
Q ss_pred CEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEE----
Q ss_conf 3265789875343364057504421233357745434666555556752242267666523773336516589998----
Q gi|254780261|r 107 QLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV---- 182 (221)
Q Consensus 107 q~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~i---- 182 (221)
|+|||+|+||||||||+||||||+++|+|||++++||++||||+ |+|+|||||++||||||+++||++||+|++|
T Consensus 198 ~~VDV~g~TKGKGFqGvvKR~gf~~~p~sHg~~~~hR~~GsiG~-~~PgRV~kg~kmaGqmG~~~rT~~Nl~IvkI~~~~ 276 (337)
T d1vqob1 198 EYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD 276 (337)
T ss_dssp CEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCC-SSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEES
T ss_pred CEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCEEEECCEEEEECCCC
T ss_conf 88999998526566551676355345654677762248855677-88874404653488658864798576999974665
Q ss_pred ------------ECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf ------------0768989997157458887099996031467785
Q gi|254780261|r 183 ------------DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNC 216 (221)
Q Consensus 183 ------------d~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~ 216 (221)
|.|+|||||||||||| ++++|+||+|+|+..+.
T Consensus 277 ~i~~~gGf~~ygdve~~~ilVKGsVPG~-~~~~V~ir~aik~~~~~ 321 (337)
T d1vqob1 277 EPTVDGGFVNYGEVDGPYTLVKGSVPGP-DKRLVRFRPAVRPNDQP 321 (337)
T ss_dssp TTCCTTCBTTTBCCCEEEEEEESCCSSC-TTCEEEEEECSSCSSCC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCC-CCCEEEEECCCCCCCCC
T ss_conf 5345687104434138889997356588-99589993002678876
No 5
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.84 E-value=22 Score=14.01 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=24.8
Q ss_pred EEEEEECCCCHHHHHCCCC---EE-------EEEECCCCEEEEEEEEE
Q ss_conf 0365320651121100341---00-------01230253265789875
Q gi|254780261|r 79 KLFEFRVQKDDDLLPVGSV---FS-------PSYFTVGQLVDVTGMTI 116 (221)
Q Consensus 79 ~l~Efrv~~~~~~~~vG~~---i~-------~~~F~~Gq~VDV~g~Sk 116 (221)
...++++.+..+..+.|.. +. +|-..+||.|.|+|+=+
T Consensus 170 d~Q~i~iQE~~e~~~~G~~Pr~i~v~l~~dlvd~~~pGd~V~i~GI~~ 217 (239)
T d1ltla_ 170 DTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLR 217 (239)
T ss_dssp EEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf 628999740424478899996799999603028658999999999998
No 6
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.66 E-value=27 Score=13.47 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=30.2
Q ss_pred ECCCEEEEEEEC-CCCC--CEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 179789999706-7788--61256405555643157101125764035634
Q gi|254780261|r 30 LDNCQVVVHRTL-DKNG--YMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPK 77 (221)
Q Consensus 30 v~~~~Vv~~kt~-ekdG--Y~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk 77 (221)
.++|.|+.+.-. +.|| |.++.|...++.+.-+.++.. |.+++..
T Consensus 2 s~d~~iIRVs~d~~~~gn~YKSIlltsqDktP~VI~rAl~----Kh~l~~~ 48 (90)
T d1rlfa_ 2 SSDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLK----KNNRDSA 48 (90)
T ss_dssp CSCEEEEEEEECCSSSCCSCCEEEEETTCCCTTHHHHHHH----HTTTTSC
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHH----HHCCCCC
T ss_conf 9867999999770789827888998528867799999999----8389978
No 7
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.60 E-value=25 Score=13.70 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=13.1
Q ss_pred CCCCCEEEECCCCCCCCCC
Q ss_conf 4336405750442123335
Q gi|254780261|r 118 KGFSGAMKRHNFGGLRATH 136 (221)
Q Consensus 118 KGFqGviKR~gf~g~~~sH 136 (221)
.||+|+|+++.+-..+...
T Consensus 141 ~~F~GCir~~~~~~~~~~l 159 (170)
T d1d2sa_ 141 PALDGCLRRDSWLDKQAEI 159 (170)
T ss_dssp CCCCEEEEEEEESCGGGEE
T ss_pred CCEEEEECCCEECCEEEEE
T ss_conf 9808898857928839334
No 8
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.31 E-value=28 Score=13.42 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=22.4
Q ss_pred EEEEECCCCEEECCCCCEEEEEEEEECCCEE
Q ss_conf 6899658451698898792268999179789
Q gi|254780261|r 5 VVARKLGMTCVYNIEGRRIPVTVLHLDNCQV 35 (221)
Q Consensus 5 lig~KiGMT~if~e~G~~vpVTViev~~~~V 35 (221)
+|.+|.|-+=+..++ +-+||+++..+.|
T Consensus 5 vLtRk~gEsI~Igd~---I~i~V~~i~g~~V 32 (57)
T d1vpza_ 5 ILTRRVGETLMVGDD---VTVTVLGVKGNQV 32 (57)
T ss_dssp EEEEETTCEEEETTT---EEEEEEEEETTEE
T ss_pred EEEEECCCEEEECCC---EEEEEEEECCCEE
T ss_conf 996017998997999---8999999739989
No 9
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.26 E-value=20 Score=14.33 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=6.4
Q ss_pred EEEEEECCCCHH
Q ss_conf 036532065112
Q gi|254780261|r 79 KLFEFRVQKDDD 90 (221)
Q Consensus 79 ~l~Efrv~~~~~ 90 (221)
.-.+||....+.
T Consensus 61 i~~~FrT~~~~G 72 (191)
T d1h30a1 61 AEFDFRTFDPEG 72 (191)
T ss_dssp EEEEEEECCSSE
T ss_pred EEEEEEECCCCE
T ss_conf 999999699986
No 10
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.18 E-value=15 Score=15.03 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=9.4
Q ss_pred CEEEEEEEEECCCCCCEEE
Q ss_conf 3265789875343364057
Q gi|254780261|r 107 QLVDVTGMTIGKGFSGAMK 125 (221)
Q Consensus 107 q~VDV~g~SkGKGFqGviK 125 (221)
+.|-|.-.|.+.||+|+--
T Consensus 130 k~viv~KRsm~~GyaGv~N 148 (177)
T d1d4oa_ 130 KQVIVMKRSLGVGYAAVDN 148 (177)
T ss_dssp SCEEEEESSSCCCTTCCCC
T ss_pred CEEEEEECCCCCCCCCCCC
T ss_conf 8899997778788667767
Done!