RPSBLAST alignment of GI: 254780261 and protein with PDBid: 1vq8

>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338

 Score =  130 bits (329), Expect = 2e-31
 Identities = 46/280 (16%), Positives = 70/280 (25%), Gaps = 73/280 (26%)

Query: 3   SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
            G    K GMT V  +              +PVTV+     + V  R  +   Y    + 
Sbjct: 40  QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 99

Query: 53  AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFR----------------------- 84
                     +                   +   E                         
Sbjct: 100 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 159

Query: 85  -----------------VQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127
                                D +   G       F  G+  DV G+T GKG  G +KR 
Sbjct: 160 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 219

Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184
                +  H      R         +P RV       G+ G ++ T  N  ++ + +   
Sbjct: 220 GVQKRKGKHARQ-GWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 278

Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211
                             LVKG VPG  K   +  R + +
Sbjct: 279 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 317