RPSBLAST alignment of GI: 254780261 and protein with PDBid: 2j01
>2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2 PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 3d5b_E 3d5d_E 3f1f_E 3f1h_E ... Length = 206
Score = 169 bits (429), Expect = 4e-43
Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 3 SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62
G++ K+GMT ++ + R +PVTV+ C VV RT +K+GY AVQ+G K V+
Sbjct: 2 KGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 63 KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122
+P++G F+ V P + L E R + + F G+ VDVTG + G+GF+G
Sbjct: 61 RPLKGHFAKAGVEPVRILREIRDFNPEG-----DTVTVEIFKPGERVDVTGTSKGRGFAG 115
Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182
MKR NF G +HG HR GS G R+ PGRV+K KKMAG G RVTV NLEVV V
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175
Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
+ L+LVKG VPG ++VR++ K+A
Sbjct: 176 IPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205