RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] (221 letters) >3ofq_D 50S ribosomal protein L3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Length = 209 Score = 233 bits (596), Expect = 2e-62 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 2/209 (0%) Query: 4 GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63 G+V +K+GMT ++ +G IPVTV+ ++ +V + L +GY A+QV G K V+K Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62 Query: 64 PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123 P G F+ V + L+EFR+ + + VG S F + VDVTG + GKGF+G Sbjct: 63 PEAGHFAKAGVEAGRGLWEFRLA-EGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121 Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183 +KR NF ATHG S+SHR GS G Q PG+VFK KKMAG+MG RVTV++L+VV VD Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181 Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212 +R L+LVKG VPGA S ++V+ + K+ Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 >3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} Length = 259 Score = 202 bits (514), Expect = 7e-53 Identities = 82/216 (37%), Positives = 116/216 (53%), Gaps = 3/216 (1%) Query: 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVH-RTLDKNGYMAVQVGAGEAKVK 59 GV+A KLGM + G +PVTV+ +V +T +GY AVQVG + + Sbjct: 42 AGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDR 101 Query: 60 NVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKG 119 ++KP G + P + L EFR+Q D + F G LVDV+G TIGKG Sbjct: 102 KLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKG 161 Query: 120 FSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEV 179 F G +KRHNF + THG SHR GS G PGRV+K KKM GRMGG + ++ L++ Sbjct: 162 FQGGIKRHNFKRGQMTHGSK-SHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKI 220 Query: 180 VSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVN 215 V +DD+ +I++KG +PG + + + + N Sbjct: 221 VKIDDQLNIIMIKGALPGK-PGNLLRIAPAKIVGKN 255 >3i1n_D 50S ribosomal protein L3; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D 2qox_D ... Length = 209 Score = 182 bits (464), Expect = 4e-47 Identities = 95/209 (45%), Positives = 131/209 (62%), Gaps = 2/209 (0%) Query: 4 GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63 G+V +K+GMT ++ +G IPVTV+ ++ +V + L +GY A+QV G K V+K Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62 Query: 64 PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123 P G F+ V + L+EFR + + VG S F + VDVTG + GKGF+G Sbjct: 63 PEAGHFAKAGVEAGRGLWEFR-LAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121 Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183 +KR NF ATHG S+SHR GS G Q PG+VFK KKMAG+MG RVTV++L+VV VD Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181 Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212 +R L+LVKG VPGA S ++V+ + K+ Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 >2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E 1vp0_E Length = 211 Score = 171 bits (433), Expect = 2e-43 Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 7/217 (3%) Query: 3 SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62 G++ K+GMT ++ R IPVTV+ C +V +T +GY AVQ+G + V+ Sbjct: 2 KGILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60 Query: 63 KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122 KPM+G F+ V+P + L EFR D + F G+ +D TG + GKG G Sbjct: 61 KPMQGHFAKAGVAPTRILREFRGFAPDG-----DSVNVDIFAEGEKIDATGTSKGKGTQG 115 Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182 MKR NF G A+HG HR GS G R+ PGRV+K K+MAG MG RVTV+NLEVV + Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175 Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGK 219 LILVKG +PGA +++R + K++ GK Sbjct: 176 RAGENLILVKGAIPGA-NGGLVVLRSAAKASAAKGGK 211 >2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2 PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 3d5b_E 3d5d_E 3f1f_E 3f1h_E ... Length = 206 Score = 169 bits (429), Expect = 4e-43 Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%) Query: 3 SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62 G++ K+GMT ++ + R +PVTV+ C VV RT +K+GY AVQ+G K V+ Sbjct: 2 KGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60 Query: 63 KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122 +P++G F+ V P + L E R + + F G+ VDVTG + G+GF+G Sbjct: 61 RPLKGHFAKAGVEPVRILREIRDFNPEG-----DTVTVEIFKPGERVDVTGTSKGRGFAG 115 Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182 MKR NF G +HG HR GS G R+ PGRV+K KKMAG G RVTV NLEVV V Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175 Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 + L+LVKG VPG ++VR++ K+A Sbjct: 176 IPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 >2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Length = 211 Score = 166 bits (422), Expect = 3e-42 Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 5/214 (2%) Query: 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKV--K 59 R G++A KLGM ++ +G++ VT+L + +C V+ + + + + G V Sbjct: 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRF 60 Query: 60 NVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKG 119 + + F+ + + PK+ + F + + + G+ ++F GQ VDVT TIGKG Sbjct: 61 RKATSILEFYRELGLPPKQTVKIFNITDNAAI-KPGTPLYAAHFRPGQYVDVTAKTIGKG 119 Query: 120 FSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEV 179 F G MKR F G ATHG + +HR G+ D GRV+ KM G+MG T L+V Sbjct: 120 FQGVMKRWGFKGQPATHGQTKTHRRPGAV-ATGDIGRVWPGTKMPGKMGNIYRTEYGLKV 178 Query: 180 VSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 ++ K +I V G VPG KN + V+DS A Sbjct: 179 WRINTKHNIIYVNGSVPGH-KNCLVKVKDSKLPA 211 >3jyw_C 60S ribosomal protein L3; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_C Length = 362 Score = 138 bits (348), Expect = 1e-33 Identities = 49/304 (16%), Positives = 77/304 (25%), Gaps = 99/304 (32%) Query: 3 SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52 + + K GMT + R VTV+ VV + + Sbjct: 40 TSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLT 99 Query: 53 AGEAKV----------KNVSKPMRGFFSS-----------------------------VN 73 A+ KN K + F+ V+ Sbjct: 100 TVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVH 159 Query: 74 VSPKKKLFEFRVQKDDDLLPVGS----------------VFSPSYFTVGQLVDVTGMTIG 117 +K + ++ G V S F +++D +T G Sbjct: 160 TQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKG 219 Query: 118 KGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNL 177 GF G R L R G P V + AG+ G + T N Sbjct: 220 HGFEGVTHRWGTKKLP--RKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINH 276 Query: 178 EVVSVDDKRG------------------------------LILVKGCVPGAKKNSWILVR 207 ++ V I+VKGC+PG +K + +R Sbjct: 277 KIYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRK-RIVTLR 335 Query: 208 DSFK 211 S Sbjct: 336 KSLY 339 >2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Score = 132 bits (332), Expect = 8e-32 Identities = 46/313 (14%), Positives = 73/313 (23%), Gaps = 108/313 (34%) Query: 3 SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52 + + K GMT + R VT++ +V + Sbjct: 44 TAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFK 103 Query: 53 AGEA--------------KVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPV---- 94 A K+ K + + KK E V Sbjct: 104 TIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVI 163 Query: 95 ---------------------------------------GSVFSPSYFTVGQLVDVTGMT 115 V F +++DV G+T Sbjct: 164 AHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVT 223 Query: 116 IGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVK 175 GKG+ G R + L R G P RV + AG+ G + T Sbjct: 224 KGKGYKGVTSRWHTKKL--PRKTHRGLRKVACIGA-WHPARVAFSVARAGQKGYHHRTEI 280 Query: 176 NLEVVSVDD-------------------------------------KRGLILVKGCVPGA 198 N ++ + +++KGCV G Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340 Query: 199 KKNSWILVRDSFK 211 KK + +R S Sbjct: 341 KK-RVLTLRKSLL 352 >1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Score = 130 bits (329), Expect = 2e-31 Identities = 46/280 (16%), Positives = 70/280 (25%), Gaps = 73/280 (26%) Query: 3 SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52 G K GMT V + +PVTV+ + V R + Y + Sbjct: 40 QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 99 Query: 53 AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFR----------------------- 84 + + E Sbjct: 100 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 159 Query: 85 -----------------VQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127 D + G F G+ DV G+T GKG G +KR Sbjct: 160 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 219 Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184 + H R +P RV G+ G ++ T N ++ + + Sbjct: 220 GVQKRKGKHARQ-GWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 278 Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211 LVKG VPG K + R + + Sbjct: 279 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 317 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 6e-04 Identities = 46/233 (19%), Positives = 69/233 (29%), Gaps = 103/233 (44%) Query: 17 NIEGRRIPVTVLHLDNC-QVVVHRTLDK----------------NGYMAVQVGAGEAK-- 57 N EG P +L + N Q V ++K NG + V +G + Sbjct: 330 NNEGV--PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSL 386 Query: 58 ------VKNVSKPM-----RGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFT-V 105 ++ P R FS ++KL +F + LPV S F Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFS------ERKL-KFSNR----FLPVASPFHSHLLVPA 435 Query: 106 GQLV--DVTGMTIGKGFSGAMKR----HNFGG--LR------------------------ 133 L+ D+ + F+ + F G LR Sbjct: 436 SDLINKDLVKNNV--SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493 Query: 134 ----ATH-------GVS----ISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNR 171 ATH G S ++HR+ TG RV +AG + N Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGV-----RVI----VAGTLDINP 537 >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} Length = 608 Score = 29.8 bits (66), Expect = 0.51 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 7 ARKLGMTCVYNI-EGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPM 65 A++LG + + I GRR + V N L +G + G V + Sbjct: 331 AQRLGRSDLGLIAAGRRADIVVFEDLNG-FSARHVL-ASGRAVAE--GGRMLVDIPTCDT 386 Query: 66 RGFFSSVNVSPKKKLFEFRVQKDDDLLPV--------------------GSVFSPSYFTV 105 S+ + P + +F V+ + + G V P T+ Sbjct: 387 TVLKGSMKL-PLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATM 445 Query: 106 GQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAG 165 + GM +G + +G ++SH SH T + G + Sbjct: 446 ISVTHRHGMAEPTTKTGFLT--GWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVI 503 Query: 166 RMGGNRVTVKNLEVVSV 182 GG +V ++ Sbjct: 504 GTGGGMAVASEGKVTAI 520 >1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} SCOP: c.86.1.1 Length = 425 Score = 27.3 bits (60), Expect = 3.2 Identities = 10/56 (17%), Positives = 22/56 (39%) Query: 45 GYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSP 100 M ++ ++N +P+ VS K +L + + K D ++ G + Sbjct: 196 FLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYT 251 >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273 Score = 27.0 bits (59), Expect = 3.6 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%) Query: 84 RVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNF 129 RV + P FT+ + V +G + NF Sbjct: 196 RVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHS-NF 240 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0600 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,899,174 Number of extensions: 86285 Number of successful extensions: 247 Number of sequences better than 10.0: 1 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 17 Length of query: 221 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 132 Effective length of database: 3,535,514 Effective search space: 466687848 Effective search space used: 466687848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.2 bits)