RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3
[Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)



>3ofq_D 50S ribosomal protein L3; protein biosynthesis, ribosomes, RNA,
           tRNA, transfer, antibi EXIT, peptidyl, ribosomal
           subunit, large; 3.10A {Escherichia coli} PDB: 1p85_B
           1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
           2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
           2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
          Length = 209

 Score =  233 bits (596), Expect = 2e-62
 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 2/209 (0%)

Query: 4   GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63
           G+V +K+GMT ++  +G  IPVTV+ ++  +V   + L  +GY A+QV  G  K   V+K
Sbjct: 3   GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62

Query: 64  PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123
           P  G F+   V   + L+EFR+  + +   VG   S   F   + VDVTG + GKGF+G 
Sbjct: 63  PEAGHFAKAGVEAGRGLWEFRLA-EGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121

Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183
           +KR NF    ATHG S+SHR  GS G  Q PG+VFK KKMAG+MG  RVTV++L+VV VD
Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181

Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212
            +R L+LVKG VPGA   S ++V+ + K+
Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209


>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Nicotiana tabacum}
          Length = 259

 Score =  202 bits (514), Expect = 7e-53
 Identities = 82/216 (37%), Positives = 116/216 (53%), Gaps = 3/216 (1%)

Query: 1   MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVH-RTLDKNGYMAVQVGAGEAKVK 59
              GV+A KLGM   +   G  +PVTV+      +V   +T   +GY AVQVG    + +
Sbjct: 42  AGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDR 101

Query: 60  NVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKG 119
            ++KP  G      + P + L EFR+Q  D       +     F  G LVDV+G TIGKG
Sbjct: 102 KLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKG 161

Query: 120 FSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEV 179
           F G +KRHNF   + THG   SHR  GS G    PGRV+K KKM GRMGG +  ++ L++
Sbjct: 162 FQGGIKRHNFKRGQMTHGSK-SHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKI 220

Query: 180 VSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVN 215
           V +DD+  +I++KG +PG    + + +  +     N
Sbjct: 221 VKIDDQLNIIMIKGALPGK-PGNLLRIAPAKIVGKN 255


>3i1n_D 50S ribosomal protein L3; ribosome structure, protein-RNA complex,
           acetylation, ribonucleoprotein, ribosomal protein,
           RNA-binding, rRNA- binding, methylation; 3.19A
           {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D 2aw4_D
           2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D 2i2t_D*
           2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D*
           2qov_D 2qox_D ...
          Length = 209

 Score =  182 bits (464), Expect = 4e-47
 Identities = 95/209 (45%), Positives = 131/209 (62%), Gaps = 2/209 (0%)

Query: 4   GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63
           G+V +K+GMT ++  +G  IPVTV+ ++  +V   + L  +GY A+QV  G  K   V+K
Sbjct: 3   GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62

Query: 64  PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123
           P  G F+   V   + L+EFR   + +   VG   S   F   + VDVTG + GKGF+G 
Sbjct: 63  PEAGHFAKAGVEAGRGLWEFR-LAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121

Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183
           +KR NF    ATHG S+SHR  GS G  Q PG+VFK KKMAG+MG  RVTV++L+VV VD
Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181

Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212
            +R L+LVKG VPGA   S ++V+ + K+
Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209


>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
           1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
           3cf5_B* 3dll_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E
           1voy_E 1vp0_E
          Length = 211

 Score =  171 bits (433), Expect = 2e-43
 Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 7/217 (3%)

Query: 3   SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62
            G++  K+GMT ++    R IPVTV+    C +V  +T   +GY AVQ+G      + V+
Sbjct: 2   KGILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60

Query: 63  KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122
           KPM+G F+   V+P + L EFR    D         +   F  G+ +D TG + GKG  G
Sbjct: 61  KPMQGHFAKAGVAPTRILREFRGFAPDG-----DSVNVDIFAEGEKIDATGTSKGKGTQG 115

Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182
            MKR NF G  A+HG    HR  GS G R+ PGRV+K K+MAG MG  RVTV+NLEVV +
Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175

Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGK 219
                LILVKG +PGA     +++R + K++    GK
Sbjct: 176 RAGENLILVKGAIPGA-NGGLVVLRSAAKASAAKGGK 211


>2j01_E 50S ribosomal protein L3; ribosome, tRNA, paromomycin, mRNA,
           translation; 2.8A {Thermus thermophilus} SCOP: b.43.3.2
           PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E
           2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E
           2wh4_E 3d5b_E 3d5d_E 3f1f_E 3f1h_E ...
          Length = 206

 Score =  169 bits (429), Expect = 4e-43
 Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%)

Query: 3   SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62
            G++  K+GMT ++  + R +PVTV+    C VV  RT +K+GY AVQ+G      K V+
Sbjct: 2   KGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60

Query: 63  KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122
           +P++G F+   V P + L E R    +         +   F  G+ VDVTG + G+GF+G
Sbjct: 61  RPLKGHFAKAGVEPVRILREIRDFNPEG-----DTVTVEIFKPGERVDVTGTSKGRGFAG 115

Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182
            MKR NF G   +HG    HR  GS G R+ PGRV+K KKMAG  G  RVTV NLEVV V
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175

Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
             +  L+LVKG VPG      ++VR++ K+A
Sbjct: 176 IPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205


>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial
           ribosome, large ribosomal subunit, ribosomal RNA; 12.10A
           {Bos taurus}
          Length = 211

 Score =  166 bits (422), Expect = 3e-42
 Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 5/214 (2%)

Query: 2   RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKV--K 59
           R G++A KLGM  ++  +G++  VT+L + +C V+ + + +        +  G   V   
Sbjct: 1   RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRF 60

Query: 60  NVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKG 119
             +  +  F+  + + PK+ +  F +  +  +   G+    ++F  GQ VDVT  TIGKG
Sbjct: 61  RKATSILEFYRELGLPPKQTVKIFNITDNAAI-KPGTPLYAAHFRPGQYVDVTAKTIGKG 119

Query: 120 FSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEV 179
           F G MKR  F G  ATHG + +HR  G+     D GRV+   KM G+MG    T   L+V
Sbjct: 120 FQGVMKRWGFKGQPATHGQTKTHRRPGAV-ATGDIGRVWPGTKMPGKMGNIYRTEYGLKV 178

Query: 180 VSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
             ++ K  +I V G VPG  KN  + V+DS   A
Sbjct: 179 WRINTKHNIIYVNGSVPGH-KNCLVKVKDSKLPA 211


>3jyw_C 60S ribosomal protein L3; eukaryotic ribosome, RACK1 protein,
           flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
           1s1i_C
          Length = 362

 Score =  138 bits (348), Expect = 1e-33
 Identities = 49/304 (16%), Positives = 77/304 (25%), Gaps = 99/304 (32%)

Query: 3   SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
           +  +  K GMT +     R             VTV+      VV      +       + 
Sbjct: 40  TSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLT 99

Query: 53  AGEAKV----------KNVSKPMRGFFSS-----------------------------VN 73
              A+           KN  K  +  F+                              V+
Sbjct: 100 TVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVH 159

Query: 74  VSPKKKLFEFRVQKDDDLLPVGS----------------VFSPSYFTVGQLVDVTGMTIG 117
              +K     +     ++   G                 V   S F   +++D   +T G
Sbjct: 160 TQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKG 219

Query: 118 KGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNL 177
            GF G   R     L          R     G    P  V  +   AG+ G +  T  N 
Sbjct: 220 HGFEGVTHRWGTKKLP--RKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINH 276

Query: 178 EVVSVDDKRG------------------------------LILVKGCVPGAKKNSWILVR 207
           ++  V                                    I+VKGC+PG +K   + +R
Sbjct: 277 KIYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRK-RIVTLR 335

Query: 208 DSFK 211
            S  
Sbjct: 336 KSLY 339


>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 403

 Score =  132 bits (332), Expect = 8e-32
 Identities = 46/313 (14%), Positives = 73/313 (23%), Gaps = 108/313 (34%)

Query: 3   SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
           +  +  K GMT +     R             VT++      +V      +         
Sbjct: 44  TAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFK 103

Query: 53  AGEA--------------KVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPV---- 94
              A                K+  K    +      +  KK  E           V    
Sbjct: 104 TIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVI 163

Query: 95  ---------------------------------------GSVFSPSYFTVGQLVDVTGMT 115
                                                    V     F   +++DV G+T
Sbjct: 164 AHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVT 223

Query: 116 IGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVK 175
            GKG+ G   R +   L          R     G    P RV  +   AG+ G +  T  
Sbjct: 224 KGKGYKGVTSRWHTKKL--PRKTHRGLRKVACIGA-WHPARVAFSVARAGQKGYHHRTEI 280

Query: 176 NLEVVSVDD-------------------------------------KRGLILVKGCVPGA 198
           N ++  +                                           +++KGCV G 
Sbjct: 281 NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGT 340

Query: 199 KKNSWILVRDSFK 211
           KK   + +R S  
Sbjct: 341 KK-RVLTLRKSLL 352


>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex,
           RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB:
           1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B*
           1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B*
           1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
          Length = 338

 Score =  130 bits (329), Expect = 2e-31
 Identities = 46/280 (16%), Positives = 70/280 (25%), Gaps = 73/280 (26%)

Query: 3   SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
            G    K GMT V  +              +PVTV+     + V  R  +   Y    + 
Sbjct: 40  QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 99

Query: 53  AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFR----------------------- 84
                     +                   +   E                         
Sbjct: 100 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 159

Query: 85  -----------------VQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127
                                D +   G       F  G+  DV G+T GKG  G +KR 
Sbjct: 160 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 219

Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184
                +  H      R         +P RV       G+ G ++ T  N  ++ + +   
Sbjct: 220 GVQKRKGKHARQ-GWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 278

Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211
                             LVKG VPG  K   +  R + +
Sbjct: 279 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 317


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 46/233 (19%), Positives = 69/233 (29%), Gaps = 103/233 (44%)

Query: 17  NIEGRRIPVTVLHLDNC-QVVVHRTLDK----------------NGYMAVQVGAGEAK-- 57
           N EG   P  +L + N  Q  V   ++K                NG   + V +G  +  
Sbjct: 330 NNEGV--PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSL 386

Query: 58  ------VKNVSKPM-----RGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFT-V 105
                 ++    P      R  FS      ++KL +F  +     LPV S F        
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFS------ERKL-KFSNR----FLPVASPFHSHLLVPA 435

Query: 106 GQLV--DVTGMTIGKGFSGAMKR----HNFGG--LR------------------------ 133
             L+  D+    +   F+    +      F G  LR                        
Sbjct: 436 SDLINKDLVKNNV--SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493

Query: 134 ----ATH-------GVS----ISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNR 171
               ATH       G S    ++HR+   TG      RV     +AG +  N 
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGV-----RVI----VAGTLDINP 537


>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
           initiative, N SGX research center for structural
           genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
          Length = 608

 Score = 29.8 bits (66), Expect = 0.51
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 7   ARKLGMTCVYNI-EGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPM 65
           A++LG + +  I  GRR  + V    N        L  +G    +   G   V   +   
Sbjct: 331 AQRLGRSDLGLIAAGRRADIVVFEDLNG-FSARHVL-ASGRAVAE--GGRMLVDIPTCDT 386

Query: 66  RGFFSSVNVSPKKKLFEFRVQKDDDLLPV--------------------GSVFSPSYFTV 105
                S+ + P +   +F V+     + +                    G V  P   T+
Sbjct: 387 TVLKGSMKL-PLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATM 445

Query: 106 GQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAG 165
             +    GM      +G +    +G        ++SH SH  T    + G +        
Sbjct: 446 ISVTHRHGMAEPTTKTGFLT--GWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVI 503

Query: 166 RMGGNRVTVKNLEVVSV 182
             GG        +V ++
Sbjct: 504 GTGGGMAVASEGKVTAI 520


>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open
           conformation, ADP complex, selenomethionine,
           transferase; HET: AMP; 3.00A {Plasmodium falciparum}
           SCOP: c.86.1.1
          Length = 425

 Score = 27.3 bits (60), Expect = 3.2
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 45  GYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSP 100
             M  ++      ++N  +P+        VS K +L +  + K D ++  G +   
Sbjct: 196 FLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYT 251


>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
           a.4.5.68 d.113.1.6
          Length = 273

 Score = 27.0 bits (59), Expect = 3.6
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 84  RVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNF 129
           RV    +  P         FT+ +   V    +G  +       NF
Sbjct: 196 RVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHS-NF 240


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,899,174
Number of extensions: 86285
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 17
Length of query: 221
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 132
Effective length of database: 3,535,514
Effective search space: 466687848
Effective search space used: 466687848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)