RPSBLAST alignment of GI: 254780261 and SCOP domain: d1vqob1

Alignment
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337
 Score =  137 bits (345), Expect = 9e-34
 Identities = 49/280 (17%), Positives = 74/280 (26%), Gaps = 73/280 (26%)

Query: 3   SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
            G    K GMT V  +              +PVTV+     + V  R  +   Y    + 
Sbjct: 39  QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 98

Query: 53  AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFRVQKD------------------- 88
                     +                   +   E     D                   
Sbjct: 99  EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158

Query: 89  ---------------------DDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127
                                D +   G       F  G+  DV G+T GKG  G +KR 
Sbjct: 159 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 218

Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184
                +  H      R  G+ G   +P RV       G+ G ++ T  N  ++ + +   
Sbjct: 219 GVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 277

Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211
                             LVKG VPG  K   +  R + +
Sbjct: 278 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 316

SCOP domain information

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]