RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] (221 letters) >d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Score = 189 bits (480), Expect = 2e-49 Identities = 95/209 (45%), Positives = 131/209 (62%), Gaps = 2/209 (0%) Query: 4 GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63 G+V +K+GMT ++ +G IPVTV+ ++ +V + L +GY A+QV G K V+K Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62 Query: 64 PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123 P G F+ V + L+EFR + + VG S F + VDVTG + GKGF+G Sbjct: 63 PEAGHFAKAGVEAGRGLWEFR-LAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121 Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183 +KR NF ATHG S+SHR GS G Q PG+VFK KKMAG+MG RVTV++L+VV VD Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181 Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212 +R L+LVKG VPGA S ++V+ + K+ Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209 >d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Length = 205 Score = 176 bits (448), Expect = 1e-45 Identities = 88/211 (41%), Positives = 121/211 (57%), Gaps = 7/211 (3%) Query: 3 SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62 G++ K+GMT ++ R IPVTV+ C +V +T +GY AVQ+G + V+ Sbjct: 2 KGILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60 Query: 63 KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122 KPM+G F+ V+P + L EFR D + F G+ +D TG + GKG G Sbjct: 61 KPMQGHFAKAGVAPTRILREFRGFAPDG-----DSVNVDIFAEGEKIDATGTSKGKGTQG 115 Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182 MKR NF G A+HG HR GS G R+ PGRV+K K+MAG MG RVTV+NLEVV + Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175 Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 LILVKG +PGA +++R + K++ Sbjct: 176 RAGENLILVKGAIPGA-NGGLVVLRSAAKAS 205 >d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Score = 170 bits (432), Expect = 8e-44 Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%) Query: 3 SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62 G++ K+GMT ++ + R +PVTV+ C VV RT +K+GY AVQ+G K V+ Sbjct: 2 KGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60 Query: 63 KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122 +P++G F+ V P + L E R + + F G+ VDVTG + G+GF+G Sbjct: 61 RPLKGHFAKAGVEPVRILREIRDFNPEG-----DTVTVEIFKPGERVDVTGTSKGRGFAG 115 Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182 MKR NF G +HG HR GS G R+ PGRV+K KKMAG G RVTV NLEVV V Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175 Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213 + L+LVKG VPG ++VR++ K+A Sbjct: 176 IPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205 >d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Score = 137 bits (345), Expect = 9e-34 Identities = 49/280 (17%), Positives = 74/280 (26%), Gaps = 73/280 (26%) Query: 3 SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52 G K GMT V + +PVTV+ + V R + Y + Sbjct: 39 QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 98 Query: 53 AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFRVQKD------------------- 88 + + E D Sbjct: 99 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158 Query: 89 ---------------------DDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127 D + G F G+ DV G+T GKG G +KR Sbjct: 159 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 218 Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184 + H R G+ G +P RV G+ G ++ T N ++ + + Sbjct: 219 GVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 277 Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211 LVKG VPG K + R + + Sbjct: 278 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 316 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0670 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 817,808 Number of extensions: 37248 Number of successful extensions: 87 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 10 Length of query: 221 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,281,736 Effective search space: 178161304 Effective search space used: 178161304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.5 bits)