RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3
[Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)



>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score =  189 bits (480), Expect = 2e-49
 Identities = 95/209 (45%), Positives = 131/209 (62%), Gaps = 2/209 (0%)

Query: 4   GVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSK 63
           G+V +K+GMT ++  +G  IPVTV+ ++  +V   + L  +GY A+QV  G  K   V+K
Sbjct: 3   GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62

Query: 64  PMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGA 123
           P  G F+   V   + L+EFR   + +   VG   S   F   + VDVTG + GKGF+G 
Sbjct: 63  PEAGHFAKAGVEAGRGLWEFR-LAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGT 121

Query: 124 MKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVD 183
           +KR NF    ATHG S+SHR  GS G  Q PG+VFK KKMAG+MG  RVTV++L+VV VD
Sbjct: 122 VKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVD 181

Query: 184 DKRGLILVKGCVPGAKKNSWILVRDSFKS 212
            +R L+LVKG VPGA   S ++V+ + K+
Sbjct: 182 AERNLLLVKGAVPGA-TGSDLIVKPAVKA 209


>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 205

 Score =  176 bits (448), Expect = 1e-45
 Identities = 88/211 (41%), Positives = 121/211 (57%), Gaps = 7/211 (3%)

Query: 3   SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62
            G++  K+GMT ++    R IPVTV+    C +V  +T   +GY AVQ+G      + V+
Sbjct: 2   KGILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60

Query: 63  KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122
           KPM+G F+   V+P + L EFR    D         +   F  G+ +D TG + GKG  G
Sbjct: 61  KPMQGHFAKAGVAPTRILREFRGFAPDG-----DSVNVDIFAEGEKIDATGTSKGKGTQG 115

Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182
            MKR NF G  A+HG    HR  GS G R+ PGRV+K K+MAG MG  RVTV+NLEVV +
Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175

Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
                LILVKG +PGA     +++R + K++
Sbjct: 176 RAGENLILVKGAIPGA-NGGLVVLRSAAKAS 205


>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
           thermophilus [TaxId: 274]}
          Length = 205

 Score =  170 bits (432), Expect = 8e-44
 Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%)

Query: 3   SGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVS 62
            G++  K+GMT ++  + R +PVTV+    C VV  RT +K+GY AVQ+G      K V+
Sbjct: 2   KGILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60

Query: 63  KPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSG 122
           +P++G F+   V P + L E R    +         +   F  G+ VDVTG + G+GF+G
Sbjct: 61  RPLKGHFAKAGVEPVRILREIRDFNPEG-----DTVTVEIFKPGERVDVTGTSKGRGFAG 115

Query: 123 AMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV 182
            MKR NF G   +HG    HR  GS G R+ PGRV+K KKMAG  G  RVTV NLEVV V
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175

Query: 183 DDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
             +  L+LVKG VPG      ++VR++ K+A
Sbjct: 176 IPEENLLLVKGAVPGP-NGGLVIVRETKKAA 205


>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 337

 Score =  137 bits (345), Expect = 9e-34
 Identities = 49/280 (17%), Positives = 74/280 (26%), Gaps = 73/280 (26%)

Query: 3   SGVVARKLGMTCVYNIEGRR----------IPVTVLHLDNCQVVVHRTLDKNGYMAVQVG 52
            G    K GMT V  +              +PVTV+     + V  R  +   Y    + 
Sbjct: 39  QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 98

Query: 53  AGEAK-----VKNVSKPMRGFFSSVNVSPKKKLFEFRVQKD------------------- 88
                     +                   +   E     D                   
Sbjct: 99  EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158

Query: 89  ---------------------DDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRH 127
                                D +   G       F  G+  DV G+T GKG  G +KR 
Sbjct: 159 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 218

Query: 128 NFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD--- 184
                +  H      R  G+ G   +P RV       G+ G ++ T  N  ++ + +   
Sbjct: 219 GVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDE 277

Query: 185 -------------KRGLILVKGCVPGAKKNSWILVRDSFK 211
                             LVKG VPG  K   +  R + +
Sbjct: 278 PTVDGGFVNYGEVDGPYTLVKGSVPGPDK-RLVRFRPAVR 316


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 817,808
Number of extensions: 37248
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 10
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)