BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3
[Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 221

 Score =  447 bits (1150), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60
           MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN
Sbjct: 1   MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60

Query: 61  VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120
           VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF
Sbjct: 61  VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120

Query: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180
           SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV
Sbjct: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180

Query: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221
           SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS
Sbjct: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 26.2 bits (56), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 21/57 (36%)

Query: 98  FSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDP 154
           FSP   TV QLV        + F    K   F  L    G S+S  S GS      P
Sbjct: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 23.5 bits (49), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 19/94 (20%)

Query: 33  CQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLL 92
           C+ V+   + ++G+  + +GA  A +    KP+  F +          F F +Q  D + 
Sbjct: 186 CERVIDTPITEHGFAGIGIGASFAGL----KPIVEFMT----------FNFAMQAIDQI- 230

Query: 93  PVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKR 126
            + S     Y + GQ   +T   + +G +GA  R
Sbjct: 231 -INSAAKTRYMSGGQ---ITTSIVFRGPNGAAAR 260


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 23.1 bits (48), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 52  GAGEAKVKNVSKPMR 66
             G++ VKN+SKP+R
Sbjct: 191 SEGKSSVKNISKPLR 205


>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 298

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 58  VKNVSKPMRGFFSSVNVSPKKKLFEF 83
            KN    +  F  ++N+ PKK  F F
Sbjct: 221 TKNYDSALEDFKFAINLDPKKASFWF 246


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 22.7 bits (47), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 126 RHNFGGLRATHGVSISHRS-HGS 147
           R++   L   +G++ISHRS HG+
Sbjct: 138 RNDLNSLCKRYGITISHRSKHGA 160


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 22.3 bits (46), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 156 RVFKNKKMAGRMGGNRV---TVKNLEVVSVDDKRGLILVKGCVPGA 198
           RV +NK MA R+G +      VKN   +S   K   +++KG V G+
Sbjct: 651 RVTRNKSMARRLGSHSALEKLVKNAN-ISSKMKEFPVIIKGDVQGS 695


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,371
Number of Sequences: 1233
Number of extensions: 5780
Number of successful extensions: 17
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 328,796
effective HSP length: 71
effective length of query: 150
effective length of database: 241,253
effective search space: 36187950
effective search space used: 36187950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)