BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] (221 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] Length = 221 Score = 447 bits (1150), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/221 (100%), Positives = 221/221 (100%) Query: 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN Sbjct: 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60 Query: 61 VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120 VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF Sbjct: 61 VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120 Query: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV Sbjct: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180 Query: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS Sbjct: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 26.2 bits (56), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 98 FSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDP 154 FSP TV QLV + F K F L G S+S S GS P Sbjct: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 19/94 (20%) Query: 33 CQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLL 92 C+ V+ + ++G+ + +GA A + KP+ F + F F +Q D + Sbjct: 186 CERVIDTPITEHGFAGIGIGASFAGL----KPIVEFMT----------FNFAMQAIDQI- 230 Query: 93 PVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKR 126 + S Y + GQ +T + +G +GA R Sbjct: 231 -INSAAKTRYMSGGQ---ITTSIVFRGPNGAAAR 260 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 12/15 (80%) Query: 52 GAGEAKVKNVSKPMR 66 G++ VKN+SKP+R Sbjct: 191 SEGKSSVKNISKPLR 205 >gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 58 VKNVSKPMRGFFSSVNVSPKKKLFEF 83 KN + F ++N+ PKK F F Sbjct: 221 TKNYDSALEDFKFAINLDPKKASFWF 246 >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 126 RHNFGGLRATHGVSISHRS-HGS 147 R++ L +G++ISHRS HG+ Sbjct: 138 RNDLNSLCKRYGITISHRSKHGA 160 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 22.3 bits (46), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 156 RVFKNKKMAGRMGGNRV---TVKNLEVVSVDDKRGLILVKGCVPGA 198 RV +NK MA R+G + VKN +S K +++KG V G+ Sbjct: 651 RVTRNKSMARRLGSHSALEKLVKNAN-ISSKMKEFPVIIKGDVQGS 695 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,371 Number of Sequences: 1233 Number of extensions: 5780 Number of successful extensions: 17 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 10 length of query: 221 length of database: 328,796 effective HSP length: 71 effective length of query: 150 effective length of database: 241,253 effective search space: 36187950 effective search space used: 36187950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)