HHsearch alignment for GI: 254780262 and conserved domain: PTZ00039
>PTZ00039 40S ribosomal protein S20; Provisional.
Probab=100.00 E-value=3.4e-39 Score=249.55 Aligned_cols=103 Identities=24% Similarity=0.469 Sum_probs=98.6
Q ss_pred CCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCC-CCCHHHHHEEEEEEEEEEE
Q ss_conf 998864899999971688999999999999997188011564898213699873067898-6314235223344578797
Q gi|254780262|r 1 MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRDQLEMRIYKRLLYII 79 (104)
Q Consensus 1 m~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~-KksreqfE~r~hkRlI~i~ 79 (104)
T Consensus 12 ~~~~~qKIRIkL~s~d~~~Ld~~~~~Ii~~ak~tg~~v~GPIpLPTK~~~~tv~kSP~~~gk~s~e~fEmRiHKRlIDi~ 91 (115)
T PTZ00039 12 EKNRLHKIRITLTSRNLKSIEKVCADIITGAKEKNLKVSGPVRMPVKTLKITTRKSPCGEGTNTWDRFEMRIYKRVIDLY 91 (115)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEEC
T ss_conf 23540799999997576589999999999998769987778448835479998528977898468988775442455522
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 6998999998647899984589989
Q gi|254780262|r 80 KPTPQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 80 ~~~~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
T Consensus 92 ~-~~~~v~~lm~l~lp~GV~IEIkl 115 (115)
T PTZ00039 92 S-SSEVVTQITSINIDPGVEVEVII 115 (115)
T ss_pred C-CHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 8-89999998688899997799869