HHsearch alignment for GI: 254780262 and conserved domain: PTZ00039

>PTZ00039 40S ribosomal protein S20; Provisional.
Probab=100.00  E-value=3.4e-39  Score=249.55  Aligned_cols=103  Identities=24%  Similarity=0.469  Sum_probs=98.6

Q ss_pred             CCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCC-CCCHHHHHEEEEEEEEEEE
Q ss_conf             998864899999971688999999999999997188011564898213699873067898-6314235223344578797
Q gi|254780262|r    1 MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRDQLEMRIYKRLLYII   79 (104)
Q Consensus         1 m~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~-KksreqfE~r~hkRlI~i~   79 (104)
T Consensus        12 ~~~~~qKIRIkL~s~d~~~Ld~~~~~Ii~~ak~tg~~v~GPIpLPTK~~~~tv~kSP~~~gk~s~e~fEmRiHKRlIDi~   91 (115)
T PTZ00039         12 EKNRLHKIRITLTSRNLKSIEKVCADIITGAKEKNLKVSGPVRMPVKTLKITTRKSPCGEGTNTWDRFEMRIYKRVIDLY   91 (115)
T ss_pred             CCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEEC
T ss_conf             23540799999997576589999999999998769987778448835479998528977898468988775442455522


Q ss_pred             CCCHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             6998999998647899984589989
Q gi|254780262|r   80 KPTPQTVDALMKLDIAAGVNVVIKL  104 (104)
Q Consensus        80 ~~~~~~~~~l~~~~lp~gV~i~i~~  104 (104)
T Consensus        92 ~-~~~~v~~lm~l~lp~GV~IEIkl  115 (115)
T PTZ00039         92 S-SSEVVTQITSINIDPGVEVEVII  115 (115)
T ss_pred             C-CHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             8-89999998688899997799869