HHsearch alignment of GI: 254780262 and MMDB domain: 2zkq_j_
>2zkq_j (j:) 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.98 E-value=6.3e-33 Score=212.62 Aligned_cols=100 Identities=25% Similarity=0.444 Sum_probs=95.3
Q ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCC-CCCCHHHHHEEEEEEEEEEECCC
Q ss_conf 86489999997168899999999999999718801156489821369987306789-86314235223344578797699
Q gi|254780262|r 4 RNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHV-DKKSRDQLEMRIYKRLLYIIKPT 82 (104)
Q Consensus 4 ~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv-~KksreqfE~r~hkRlI~i~~~~ 82 (104)
..++|+|+|+|||+.+||++|.+|.++|+.+|+.++||+||||++.+||++||||+ +|+||||||+|+|+|+|+|.+ +
T Consensus 16 ~~~~i~I~l~s~d~~~Le~~~~~i~~~a~~~~i~v~gp~~lPtk~~~~tvlrsPh~~~kksreqfe~r~hkR~i~i~~-~ 94 (119)
T 2zkq_j 16 AIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHS-P 94 (119)
T ss_dssp ---CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCCBCS-C
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHEEEEEEEEEEEEC-C
T ss_conf 427999999963876899999999999998199664776899634899986167566663366616357779999858-8
Q ss_pred HHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 8999998647899984589989
Q gi|254780262|r 83 PQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 83 ~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
+++++.+++.++|+||+|+|++
T Consensus 95 ~~~~~~~~~~~~p~GV~i~v~i 116 (119)
T 2zkq_j 95 SEIVKQITSISIEPGVEVEVTI 116 (119)
T ss_dssp THHHHHHHHCCCCSSEEEEEC-
T ss_pred HHHHHHHHCCCCCCCCEEEEEE
T ss_conf 9999998688899996799998