Query gi|254780262|ref|YP_003064675.1| 30S ribosomal protein S10 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 104
No_of_seqs 117 out of 758
Neff 5.8
Searched_HMMs 33803
Date Tue May 24 07:31:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780262.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1m_J 30S ribosomal protein 100.0 2.3E-35 6.9E-40 226.8 8.2 101 4-104 2-102 (103)
2 >3bbn_J Ribosomal protein S10; 100.0 6.3E-35 1.9E-39 224.3 7.4 101 4-104 97-197 (197)
3 >2zkq_j 40S ribosomal protein 100.0 6.3E-33 1.9E-37 212.6 8.1 100 4-104 16-116 (119)
4 >2vqe_J 30S ribosomal protein 100.0 1.8E-34 5.5E-39 221.6 0.1 99 6-104 2-100 (105)
5 >3jyv_J 40S ribosomal protein 100.0 2.4E-33 7.2E-38 215.0 2.8 95 7-102 1-96 (96)
6 >3d3b_J 30S ribosomal protein 99.9 1.7E-25 5E-30 169.3 9.1 82 2-104 5-86 (87)
7 >1hc8_A Ribosomal protein L11; 33.5 33 0.00097 16.0 2.6 26 15-40 51-76 (76)
8 >3bbo_K Ribosomal protein L11; 31.8 26 0.00078 16.5 1.9 31 14-44 42-72 (80)
9 >3egv_B 50S ribosomal protein 27.2 15 0.00045 17.9 0.0 23 17-39 116-138 (146)
10 >1b7y_B Phers, protein (phenyl 20.6 64 0.0019 14.3 3.2 36 6-41 60-99 (102)
No 1
>>3i1m_J 30S ribosomal protein S10; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_J 1p87_J* 1vs7_J* 2avy_J 2aw7_J 1vs5_J 2i2u_J 2i2p_J* 2qan_J* 2qb9_J* 2qbb_J* 2qbd_J 2qbf_J 2qbh_J* 2qbj_J* 2qou_J* 2qow_J* 2qoy_J* 2qp0_J* 2vho_J ... (J:)
Probab=100.00 E-value=2.3e-35 Score=226.80 Aligned_cols=101 Identities=56% Similarity=0.849 Sum_probs=98.7
Q ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECCCH
Q ss_conf 86489999997168899999999999999718801156489821369987306789863142352233445787976998
Q gi|254780262|r 4 RNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTP 83 (104)
Q Consensus 4 ~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~~~ 83 (104)
+.++|+|+|+|||+..||++|++|.++|+++|+.++||+||||++.+||++||||++||||||||+|+|+|+|+|+++++
T Consensus 2 ~~~~i~I~l~S~d~~~Le~~~~~i~~~a~~~~~~v~gp~~lPtk~~~~tvlrSphv~kksreqfe~r~~kR~i~i~~~~~ 81 (103)
T 3i1m_J 2 QNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTE 81 (103)
T ss_dssp ---CBCCEEEESCHHHHHHHHHHHHHHHHHHSCCCCCCCCCCCEEEEEEECCSSSSCTTCCEEEEEEEEEECCCBSCCCH
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHEEEEEEEEEECCCH
T ss_conf 97769999996378899999999999999839925167789848889999737889985789710515279999978998
Q ss_pred HHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998647899984589989
Q gi|254780262|r 84 QTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 84 ~~~~~l~~~~lp~gV~i~i~~ 104 (104)
++++.|+++++|+||+|+|++
T Consensus 82 ~~~~~~l~~~~p~GV~i~v~v 102 (103)
T 3i1m_J 82 KTVDALMRLDLAAGVDVQISL 102 (103)
T ss_dssp HHHHHHTTCCCCSSCEEECCC
T ss_pred HHHHHHHCCCCCCCCEEEEEE
T ss_conf 999998678899994699997
No 2
>>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Mesembryanthemum crystallinum} (J:)
Probab=100.00 E-value=6.3e-35 Score=224.29 Aligned_cols=101 Identities=38% Similarity=0.669 Sum_probs=98.3
Q ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECCCH
Q ss_conf 86489999997168899999999999999718801156489821369987306789863142352233445787976998
Q gi|254780262|r 4 RNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTP 83 (104)
Q Consensus 4 ~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~~~ 83 (104)
..++|+|+|+|||..+||.||++|.++|+++|+++.||+||||++.+||++||||+|||||||||+|+|+|+|+|+++++
T Consensus 97 ~~~~i~I~l~s~d~~~Le~~~~~i~~~a~~~~i~v~gp~~LPtk~~~~tvlrSphv~KksreqfE~rt~kR~i~I~~~~~ 176 (197)
T 3bbn_J 97 PKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPTA 176 (197)
T ss_dssp --CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSCCCEEEEEEEEEEEESSCCH
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCH
T ss_conf 65459999996778899999999999999839915087179836688988607877885302127999989999848998
Q ss_pred HHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998647899984589989
Q gi|254780262|r 84 QTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 84 ~~~~~l~~~~lp~gV~i~i~~ 104 (104)
++++.|++.++|+||+|+|+|
T Consensus 177 ~~~~~~~~~~lP~GV~i~v~i 197 (197)
T 3bbn_J 177 QTIDSLMQLDLPAGVDVEVKL 197 (197)
T ss_dssp HHHHHHTTCCCCSSCEEEEEC
T ss_pred HHHHHHHCCCCCCCCEEEEEC
T ss_conf 999999678789996699969
No 3
>>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (j:)
Probab=99.98 E-value=6.3e-33 Score=212.62 Aligned_cols=100 Identities=25% Similarity=0.444 Sum_probs=95.3
Q ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCC-CCCCHHHHHEEEEEEEEEEECCC
Q ss_conf 86489999997168899999999999999718801156489821369987306789-86314235223344578797699
Q gi|254780262|r 4 RNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHV-DKKSRDQLEMRIYKRLLYIIKPT 82 (104)
Q Consensus 4 ~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv-~KksreqfE~r~hkRlI~i~~~~ 82 (104)
..++|+|+|+|||+.+||++|.+|.++|+.+|+.++||+||||++.+||++||||+ +|+||||||+|+|+|+|+|.+ +
T Consensus 16 ~~~~i~I~l~s~d~~~Le~~~~~i~~~a~~~~i~v~gp~~lPtk~~~~tvlrsPh~~~kksreqfe~r~hkR~i~i~~-~ 94 (119)
T 2zkq_j 16 AIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHS-P 94 (119)
T ss_dssp ---CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCCBCS-C
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHEEEEEEEEEEEEC-C
T ss_conf 427999999963876899999999999998199664776899634899986167566663366616357779999858-8
Q ss_pred HHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 8999998647899984589989
Q gi|254780262|r 83 PQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 83 ~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
+++++.+++.++|+||+|+|++
T Consensus 95 ~~~~~~~~~~~~p~GV~i~v~i 116 (119)
T 2zkq_j 95 SEIVKQITSISIEPGVEVEVTI 116 (119)
T ss_dssp THHHHHHHHCCCCSSEEEEEC-
T ss_pred HHHHHHHHCCCCCCCCEEEEEE
T ss_conf 9999998688899996799998
No 4
>>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (J:)
Probab=99.98 E-value=1.8e-34 Score=221.58 Aligned_cols=99 Identities=44% Similarity=0.776 Sum_probs=97.0
Q ss_pred EEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECCCHHH
Q ss_conf 48999999716889999999999999971880115648982136998730678986314235223344578797699899
Q gi|254780262|r 6 IRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTPQT 85 (104)
Q Consensus 6 ~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~~~~~ 85 (104)
|+|+|+|+|||+..||++|++|.++|+.+|++++||+||||++.+||++||||++||||||||+|+|+|+|+|+++++++
T Consensus 2 ~~i~I~l~s~d~~~Le~~~~~i~~~~~~~~i~~~gp~~LPtk~~~~tvlrSPhv~kksreqfe~r~~kR~i~i~~~~~~~ 81 (105)
T 2vqe_J 2 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKT 81 (105)
T ss_dssp -CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSCTTCCCEEECCBEEECCCBSSCCTTH
T ss_pred CEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHEEEEEEEEEECCCHHH
T ss_conf 64999999707899999999999999980997616878995889999974687998537774125525999997899899
Q ss_pred HHHHHCCCCCCCCEEEEEC
Q ss_conf 9998647899984589989
Q gi|254780262|r 86 VDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 86 ~~~l~~~~lp~gV~i~i~~ 104 (104)
++.|+++++|+||+++|++
T Consensus 82 ~~~l~~~~~p~GV~i~i~~ 100 (105)
T 2vqe_J 82 IEQLMTLDLPTGVEIEIKT 100 (105)
T ss_dssp HHHSSSCCCCSSCEEEECC
T ss_pred HHHHHCCCCCCCCEEEEEE
T ss_conf 9998677689996799999
No 5
>>3jyv_J 40S ribosomal protein S20; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_J (J:)
Probab=99.97 E-value=2.4e-33 Score=215.04 Aligned_cols=95 Identities=24% Similarity=0.433 Sum_probs=91.4
Q ss_pred EEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCC-CCCHHHHHEEEEEEEEEEECCCHHH
Q ss_conf 899999971688999999999999997188011564898213699873067898-6314235223344578797699899
Q gi|254780262|r 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRDQLEMRIYKRLLYIIKPTPQT 85 (104)
Q Consensus 7 kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~-KksreqfE~r~hkRlI~i~~~~~~~ 85 (104)
||+|+|+|||+.+||++|+++.++|+++|++++||+||||++.+||++||||++ ||||||||||+|+|+|+|.+ ++++
T Consensus 1 ki~I~l~s~d~~~Le~~~~~i~~~a~~~~i~v~gp~~lPtk~~~~tvlrSphvd~kksreqfE~rthkR~i~i~~-~~~~ 79 (96)
T 3jyv_J 1 KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEA-PVQI 79 (96)
T ss_dssp CBCCEEEESSHHHHHHHHHHHHHHTCSSSCCEEECCCCCCCCCCEEECSSCSSSCSSCCEEECCCCEEECCEECC-CSGG
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHEEEEEEEEEEEEEC-CHHH
T ss_conf 989999965845899999999999998299232775799506889888178779985755589998679999868-7899
Q ss_pred HHHHHCCCCCCCCEEEE
Q ss_conf 99986478999845899
Q gi|254780262|r 86 VDALMKLDIAAGVNVVI 102 (104)
Q Consensus 86 ~~~l~~~~lp~gV~i~i 102 (104)
++.+++.++|+||+|+|
T Consensus 80 ~~~~~~~~lp~GV~iev 96 (96)
T 3jyv_J 80 VKRITQITIEPGVDVEV 96 (96)
T ss_dssp GSGGGGCCCCTTSEEEC
T ss_pred HHHHHCCCCCCCCEEEC
T ss_conf 99985887899946869
No 6
>>3d3b_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3imq_J 3d3c_J (J:)
Probab=99.92 E-value=1.7e-25 Score=169.31 Aligned_cols=82 Identities=54% Similarity=0.816 Sum_probs=78.4
Q ss_pred CCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECC
Q ss_conf 98864899999971688999999999999997188011564898213699873067898631423522334457879769
Q gi|254780262|r 2 TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKP 81 (104)
Q Consensus 2 ~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~ 81 (104)
..++|||||+|+||||..||++|++|+++++.+|+.++|||||||++ |+|||+|||+++
T Consensus 5 ~~~~~kirIkL~s~d~~~Ld~~~~~Ii~~ak~~~~~v~GPIpLPTk~---------------------RiHKRlIdi~~~ 63 (87)
T 3d3b_J 5 SMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS---------------------RTHLRLVDIVEP 63 (87)
T ss_dssp TCTTCEEEEEEEESCHHHHHHHHHHHHHHHHTTTCEEEEEEEEEEET---------------------TEEEEEEEEESC
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC---------------------EEEEEEEEECCC
T ss_conf 62306399999975688999999999999875599785251488755---------------------057377677079
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 98999998647899984589989
Q gi|254780262|r 82 TPQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 82 ~~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
+++++++||+++||+||+|||++
T Consensus 64 ~~~~i~~L~~l~lp~GV~vei~i 86 (87)
T 3d3b_J 64 TEKTVDALMRLDLAAGVDVQISL 86 (87)
T ss_dssp CHHHHHHHHHCCCCTTEEEEEEE
T ss_pred CHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 98999998579999997699997
No 7
>>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} (A:)
Probab=33.51 E-value=33 Score=15.99 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.9
Q ss_pred ECHHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf 16889999999999999971880115
Q gi|254780262|r 15 FDSRILDSSMREIVLTTKKSGSQIVG 40 (104)
Q Consensus 15 ~d~~~Ld~~~~~i~~~a~~~g~~v~G 40 (104)
-.+..|+..|+.+.-+|+.+|+.+.|
T Consensus 51 l~~~~l~~~~k~V~GTa~SmGi~V~g 76 (76)
T 1hc8_A 51 LNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp CCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 07999999999989648417689769
No 8
>>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (K:145-224)
Probab=31.80 E-value=26 Score=16.55 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=25.7
Q ss_pred EECHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf 7168899999999999999718801156489
Q gi|254780262|r 14 AFDSRILDSSMREIVLTTKKSGSQIVGPIPF 44 (104)
Q Consensus 14 s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipL 44 (104)
...+..|+.+|+.+.-+|+.+|+.+.|..|-
T Consensus 42 d~~~~~l~~~vk~v~GtarSmGi~V~g~~~~ 72 (80)
T 3bbo_K 42 DLNCTTIESAMRIIAGTAANMGIDIDPPILV 72 (80)
T ss_dssp TSCCSSHHHHHHHHHHHHTTTTEEEC-----
T ss_pred HHCCCCHHHHHHHHHEEEEECEEEEECCCHH
T ss_conf 6276669999998451322586899786318
No 9
>>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase, cytoplasm; HET: SAH 4MM; 1.75A {Thermus thermophilus} (B:)
Probab=27.16 E-value=15 Score=17.93 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 88999999999999997188011
Q gi|254780262|r 17 SRILDSSMREIVLTTKKSGSQIV 39 (104)
Q Consensus 17 ~~~Ld~~~~~i~~~a~~~g~~v~ 39 (104)
+..|+..|+.+.-+|+.+|+.+.
T Consensus 116 ~~~l~~~~k~vlGTa~SmGi~V~ 138 (146)
T 3egv_B 116 TTDLEAAARMIAGSARSMGVEVV 138 (146)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHHEEEEECEEEEE
T ss_conf 68799999964513266869999
No 10
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:684-785)
Probab=20.63 E-value=64 Score=14.30 Aligned_cols=36 Identities=6% Similarity=0.174 Sum_probs=26.6
Q ss_pred EEEEEEEEEEC----HHHHHHHHHHHHHHHHHHCCEECCC
Q ss_conf 48999999716----8899999999999999718801156
Q gi|254780262|r 6 IRICICLKAFD----SRILDSSMREIVLTTKKSGSQIVGP 41 (104)
Q Consensus 6 ~kirIkl~s~d----~~~Ld~~~~~i~~~a~~~g~~v~Gp 41 (104)
.=+|+.++|.| ...++...+.+..+....|+.++|-
T Consensus 60 l~~rl~~~~~~rTLt~~ev~~~~~~i~~~l~~~~a~lRg~ 99 (102)
T 1b7y_B 60 LAFHLRFRHPKRTLRDEEVEEAVSRVAEALRARGFGLRGL 99 (102)
T ss_dssp CEEEEEECCSSSCCCHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 9999999998999799999999999999999759797888
Done!