HHsearch results for GI: 254780262 and protein with PDBid: 3d3c_J
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination, RRN antitermination; 2.60A {Escherichia coli K12} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=99.94 E-value=8.7e-27 Score=175.92 Aligned_cols=82 Identities=52% Similarity=0.807 Sum_probs=77.9
Q ss_pred CCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECC
Q ss_conf 98864899999971688999999999999997188011564898213699873067898631423522334457879769
Q gi|254780262|r 2 TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKP 81 (104)
Q Consensus 2 ~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~ 81 (104)
.+.+|||||+|+||||++||++|++|+++|+++|++++|||||||+ +|+|||+|||+++
T Consensus 5 ~m~~qkiRIkL~s~d~~~Ld~~~~~Iv~~ak~tg~~v~GPIpLPT~---------------------~R~HKRlIdi~~~ 63 (87)
T 3d3c_J 5 SMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTR---------------------SRTHLRLVDIVEP 63 (87)
T ss_dssp CCSSCEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE---------------------TTEEEEEEEEESC
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC---------------------CEEEEEEEEEECC
T ss_conf 6330629999997258899999999999987559978515448874---------------------2678787886088
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 98999998647899984589989
Q gi|254780262|r 82 TPQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 82 ~~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
+++++++||+++||+||+|||+|
T Consensus 64 ~~~tv~~L~~l~lp~GV~iei~~ 86 (87)
T 3d3c_J 64 TEKTVDDLMRLDLAAGVDVQISL 86 (87)
T ss_dssp CHHHHHHHHHCCCCTTEEEEEEE
T ss_pred CHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 98999998678999996699997