Query gi|254780262|ref|YP_003064675.1| 30S ribosomal protein S10 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 104
No_of_seqs 117 out of 758
Neff 5.8
Searched_HMMs 13730
Date Tue May 24 08:02:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780262.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qalj1 d.58.15.1 (J:5-102) Ri 100.0 2.4E-39 1.7E-43 247.8 7.5 98 7-104 1-98 (98)
2 d2uubj1 d.58.15.1 (J:3-100) Ri 100.0 5.2E-38 3.8E-42 240.0 5.5 97 7-103 1-97 (98)
3 d1jjcb4 d.58.13.1 (B:682-785) 36.3 13 0.00098 16.0 4.0 35 7-41 63-101 (104)
4 d1xbpg1 a.4.7.1 (G:72-143) Rib 23.3 14 0.001 15.8 1.3 26 15-40 44-69 (72)
5 d1hc8a_ a.4.7.1 (A:) Ribosomal 20.0 27 0.0019 14.2 2.6 24 15-38 50-73 (74)
6 d1mmsa1 a.4.7.1 (A:71-140) Rib 16.5 32 0.0023 13.8 1.8 24 15-38 46-69 (70)
7 d1nqua_ c.16.1.1 (A:) Lumazine 16.4 33 0.0024 13.7 4.1 48 1-48 8-63 (154)
8 d1ejba_ c.16.1.1 (A:) Lumazine 12.2 43 0.0031 13.0 3.4 45 2-46 13-65 (168)
9 d1hv2a_ d.42.1.1 (A:) Elongin 9.4 54 0.0039 12.5 1.2 37 10-46 6-48 (99)
10 d4ubpb_ b.85.3.1 (B:) Urease, 9.2 47 0.0035 12.8 0.9 14 90-103 61-74 (122)
No 1
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.4e-39 Score=247.82 Aligned_cols=98 Identities=57% Similarity=0.863 Sum_probs=96.6
Q ss_pred EEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECCCHHHH
Q ss_conf 89999997168899999999999999718801156489821369987306789863142352233445787976998999
Q gi|254780262|r 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTPQTV 86 (104)
Q Consensus 7 kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~~~~~~ 86 (104)
||||+|+|||+++||++|++|+++|+.+|++++||+||||++++|||+||||++|+||||||||+|||+|+|++++++++
T Consensus 1 kirI~L~s~d~~~Ld~~~~~i~~~a~~~g~~v~GPiplPtk~~~~tvlrSPh~~kksreqfE~r~hkRli~i~~~~~~~~ 80 (98)
T d2qalj1 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTV 80 (98)
T ss_dssp CBEECEEESSHHHHHHHHHHHHHHHTTSSCCCCBCCCCCCEEEEEEECCSSSSCTTCCEEEEEEEEEECBCBSSCCHHHH
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHEEEEEEEEEEEEECCCHHHH
T ss_conf 98999996068899999999999999819917888789958889999856999995166116015389999988998999
Q ss_pred HHHHCCCCCCCCEEEEEC
Q ss_conf 998647899984589989
Q gi|254780262|r 87 DALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 87 ~~l~~~~lp~gV~i~i~~ 104 (104)
++||++++|+||+|+|+|
T Consensus 81 ~~l~~~~lp~GV~i~i~l 98 (98)
T d2qalj1 81 DALMRLDLAAGVDVQISL 98 (98)
T ss_dssp HHTTTSCCCSSCCCCEEC
T ss_pred HHHHCCCCCCCCEEEEEC
T ss_conf 998668899981799979
No 2
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=5.2e-38 Score=240.00 Aligned_cols=97 Identities=45% Similarity=0.805 Sum_probs=95.5
Q ss_pred EEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECCCHHHH
Q ss_conf 89999997168899999999999999718801156489821369987306789863142352233445787976998999
Q gi|254780262|r 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTPQTV 86 (104)
Q Consensus 7 kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~~~~~~ 86 (104)
||||+|+|||+.+||++|++|+++|+.+|++++||+||||++.+||++||||+||+||||||||+|+|+|+|++++++++
T Consensus 1 kirI~l~s~d~~~Ld~~~~~i~~~a~~~g~~v~gpipLPtk~~~~tvlrSphv~kksreqfE~rthkR~i~i~~~~~~~~ 80 (98)
T d2uubj1 1 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI 80 (98)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTHHHHTTSSCCCCEEEEEEEEEEEECCSSSSSCTTCCCEEEEEEEEEEEECSSCCTTHH
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEEECCCCCCCHHHHHEEEEEEEEEEEECCCHHHH
T ss_conf 98999997268899999999999999819966067789958899999726879996388731258789999968998999
Q ss_pred HHHHCCCCCCCCEEEEE
Q ss_conf 99864789998458998
Q gi|254780262|r 87 DALMKLDIAAGVNVVIK 103 (104)
Q Consensus 87 ~~l~~~~lp~gV~i~i~ 103 (104)
+.|++++||+||+|+|+
T Consensus 81 ~~l~~~~lP~GV~i~ik 97 (98)
T d2uubj1 81 EQLMTLDLPTGVEIEIK 97 (98)
T ss_dssp HHSSSCCCCSSCEECCC
T ss_pred HHHHCCCCCCCCEEEEE
T ss_conf 99967879999379985
No 3
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]}
Probab=36.28 E-value=13 Score=15.97 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=27.2
Q ss_pred EEEEEEEEEC----HHHHHHHHHHHHHHHHHHCCEECCC
Q ss_conf 8999999716----8899999999999999718801156
Q gi|254780262|r 7 RICICLKAFD----SRILDSSMREIVLTTKKSGSQIVGP 41 (104)
Q Consensus 7 kirIkl~s~d----~~~Ld~~~~~i~~~a~~~g~~v~Gp 41 (104)
-+|+.+++.| ...++...+.|..+++..|+.++|-
T Consensus 63 ~~r~~~q~~~kTLtd~eV~~~~~~i~~~l~~~~a~lRG~ 101 (104)
T d1jjcb4 63 AFHLRFRHPKRTLRDEEVEEAVSRVAEALRARGFGLRGL 101 (104)
T ss_dssp EEEEEECCSSSCCCHHHHHHHHHHHHHHHHTTTCBCSCC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 999997589888799999999999999999859896787
No 4
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=23.30 E-value=14 Score=15.80 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=20.7
Q ss_pred ECHHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf 16889999999999999971880115
Q gi|254780262|r 15 FDSRILDSSMREIVLTTKKSGSQIVG 40 (104)
Q Consensus 15 ~d~~~Ld~~~~~i~~~a~~~g~~v~G 40 (104)
..+..|+..|+.+.-+|+.+|+.|.|
T Consensus 44 l~~~~l~~~~k~V~GTa~SmGi~Veg 69 (72)
T d1xbpg1 44 LNAGSVEAAANTVAGTARSMGVTVEG 69 (72)
T ss_pred CCCCCHHHHHHHHHHHHEECEEEEEC
T ss_conf 38999999999978403356489846
No 5
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.04 E-value=27 Score=14.23 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.6
Q ss_pred ECHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 168899999999999999718801
Q gi|254780262|r 15 FDSRILDSSMREIVLTTKKSGSQI 38 (104)
Q Consensus 15 ~d~~~Ld~~~~~i~~~a~~~g~~v 38 (104)
.+...|+.+|+.+..+|+.+|+.+
T Consensus 50 l~~~~l~~a~k~v~GtArSMGI~V 73 (74)
T d1hc8a_ 50 LNAASIEAAMRMIEGTARSMGIVV 73 (74)
T ss_dssp CCCSSHHHHHHHHHHHHHHHTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCEEEE
T ss_conf 499999999999996686263783
No 6
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.47 E-value=32 Score=13.77 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.0
Q ss_pred ECHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 168899999999999999718801
Q gi|254780262|r 15 FDSRILDSSMREIVLTTKKSGSQI 38 (104)
Q Consensus 15 ~d~~~Ld~~~~~i~~~a~~~g~~v 38 (104)
.++..|+.+|+.+.-+|+.+|+.+
T Consensus 46 l~~~~l~~a~k~v~GtArSMGI~V 69 (70)
T d1mmsa1 46 LNANSLEAAMKIIEGTAKSMGIEV 69 (70)
T ss_dssp CCCSSHHHHHHHHHHHHTTTTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCEEEE
T ss_conf 688899999999998686074485
No 7
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=16.37 E-value=33 Score=13.72 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=38.8
Q ss_pred CCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCE--------ECCCCCCCCEE
Q ss_conf 9988648999999716889999999999999971880--------11564898213
Q gi|254780262|r 1 MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQ--------IVGPIPFPRSI 48 (104)
Q Consensus 1 m~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~--------v~GpipLPtk~ 48 (104)
+..++.||-|..-.|+....|.-.+...+.....|+. +.|-+-+|.-.
T Consensus 8 ~~~~~~ri~IV~s~~n~~I~~~Ll~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~ 63 (154)
T d1nqua_ 8 LTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAA 63 (154)
T ss_dssp SCCTTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHH
T ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHH
T ss_conf 26899889999945769999999999999999859984562567708777717999
No 8
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.22 E-value=43 Score=13.03 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=37.2
Q ss_pred CCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCE--------ECCCCCCCC
Q ss_conf 988648999999716889999999999999971880--------115648982
Q gi|254780262|r 2 TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQ--------IVGPIPFPR 46 (104)
Q Consensus 2 ~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~--------v~GpipLPt 46 (104)
..++.||-|..-.|+....|.-.....+.....|+. +.|-+-||.
T Consensus 13 d~~~~rI~IV~s~~n~~I~~~Ll~ga~~~L~~~gi~~~~i~~~~VPGa~EiP~ 65 (168)
T d1ejba_ 13 DGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPW 65 (168)
T ss_dssp CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
T ss_conf 87689899997108789999999999999998699866746996387168899
No 9
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.40 E-value=54 Score=12.45 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=18.6
Q ss_pred EEEEEECH------HHHHHHHHHHHHHHHHHCCEECCCCCCCC
Q ss_conf 99997168------89999999999999971880115648982
Q gi|254780262|r 10 ICLKAFDS------RILDSSMREIVLTTKKSGSQIVGPIPFPR 46 (104)
Q Consensus 10 Ikl~s~d~------~~Ld~~~~~i~~~a~~~g~~v~GpipLPt 46 (104)
|+|.|-|- ..+-..+..|.+.....|..-.++||||.
T Consensus 6 v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~e~~~~Ipl~~ 48 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQ 48 (99)
T ss_dssp EEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETT
T ss_pred EEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999089998995299999869999999735877767410588
No 10
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=9.25 E-value=47 Score=12.77 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.0
Q ss_pred HCCCCCCCCEEEEE
Q ss_conf 64789998458998
Q gi|254780262|r 90 MKLDIAAGVNVVIK 103 (104)
Q Consensus 90 ~~~~lp~gV~i~i~ 103 (104)
|++++|+|-.+..+
T Consensus 61 ~RLdIpaGTavRFE 74 (122)
T d4ubpb_ 61 RRLNIPSGTAARFE 74 (122)
T ss_dssp EEECSCTTCEEEEC
T ss_pred CCCCCCCCCEEEEC
T ss_conf 55477777758778
Done!