PSIBLAST alignment of GI: 254780262 and protein with PDB id: 3d3b
>gi|220702383|pdb|3D3B|J Chain J, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. Length = 87
>gi|266618677|pdb|3IMQ|J Chain J, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 87
>gi|266618679|pdb|3IMQ|K Chain K, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 87
>gi|266618681|pdb|3IMQ|L Chain L, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 87
>gi|295789220|pdb|2KVQ|E Chain E, Solution Structure Of Nuse:nusg-Ctd Complex Length = 87
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 21/103 (20%)
Query: 2 TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDK 61
+ +N RI I LKAFD R++D + EIV T K++G+Q+ GPIP P
Sbjct: 5 SMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS------------- 51
Query: 62 KSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104
R + RL+ I++PT +TVDALM+LD+AAGV+V I L
Sbjct: 52 --------RTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 86