BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780262|ref|YP_003064675.1| 30S ribosomal protein S10
[Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780262|ref|YP_003064675.1| 30S ribosomal protein S10 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 104

 Score =  209 bits (533), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60
           MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD
Sbjct: 1   MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60

Query: 61  KKSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104
           KKSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL
Sbjct: 61  KKSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104


>537021.9.peg.1079_1 
          Length = 251

 Score = 23.1 bits (48), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 46 RSIRRFTVNRSPHVDKKSR 64
          R + R T+N +PH +++ R
Sbjct: 69 RQVIRMTINETPHYNEQER 87


>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 199

 Score = 21.6 bits (44), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 17/49 (34%)

Query: 44 FPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKPTPQTVDALMKL 92
          FPRSI+   VN++                 RLL I++ +P  ++ L K+
Sbjct: 51 FPRSIQNNKVNKA-----------------RLLGILQKSPAKLEILEKI 82


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 20.4 bits (41), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 44  FPRSIRRFTVNRSPHVD--------------KKSRDQLEMRIYKRLLYIIKPTPQTVDAL 89
           F R +R+ T     ++D              KK  + L+MR+ +  L I+  T   +D +
Sbjct: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-I 180

Query: 90  MKLDIAA-GVNVV 101
             L IAA GVN +
Sbjct: 181 DALKIAAQGVNAL 193


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.139    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,157
Number of Sequences: 1233
Number of extensions: 1904
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 328,796
effective HSP length: 62
effective length of query: 42
effective length of database: 252,350
effective search space: 10598700
effective search space used: 10598700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)