HHsearch alignment for GI: 254780263 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.99  E-value=7.1e-05  Score=49.29  Aligned_cols=122  Identities=21%  Similarity=0.304  Sum_probs=74.5

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHCCCE--EEEEE-----------------E
Q ss_conf             3882799999046898878999999876444200131--2686---869862920--63789-----------------9
Q gi|254780263|r    9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLRGIT--IATAH-----------------V   64 (392)
Q Consensus         9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~rGiT--i~~~~-----------------~   64 (392)
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH
T ss_conf             89985899981567974868999999999749945898505678689999999998609853167788997999999999


Q ss_pred             EEECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHH----HHCCCCCEEEEECCC
Q ss_conf             98219908999847873----0246779--8774002331452012344332106778888----631876023310023
Q gi|254780263|r   65 SYETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLA----RQIGISSIVVYMNKV  134 (392)
Q Consensus        65 ~~~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~----~~lgi~~iIv~iNKm  134 (392)
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A--~~~A~aF~e~l~it-GvI-lTKl  249 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---A--VNTAKAFNEALGIT-GVI-LTKL  249 (451)
T ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH---H--HHHHHHHHHHCCCC-EEE-EECC
T ss_conf             999749988999688733030999999999985539874899876444567---8--99999986626986-499-9714


Q ss_pred             CCC
Q ss_conf             335
Q gi|254780263|r  135 DAV  137 (392)
Q Consensus       135 D~v  137 (392)
T Consensus       250 DGd  252 (451)
T COG0541         250 DGD  252 (451)
T ss_pred             CCC
T ss_conf             678