HHsearch alignment for GI: 254780263 and conserved domain: PRK05306
>PRK05306 infB translation initiation factor IF-2; Validated.
Probab=100.00 E-value=3.9e-43 Score=286.51 Aligned_cols=251 Identities=29% Similarity=0.355 Sum_probs=186.1
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHH
Q ss_conf 10388279999904689887899999987644420013126868698629206378999821-99089998478730246
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYV 85 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~ 85 (392)
T Consensus 337 ~~~r~pv-vt~mghvdhgkt~lld~~r~~-~v~~~e-----------~ggitq~iga~~v~~~~~~~itf~dtpgh~af~ 403 (839)
T PRK05306 337 LVPRPPV-VTIMGHVDHGKTSLLDAIRKT-KVAAGE-----------AGGITQHIGAYQVETENGKKITFLDTPGHEAFT 403 (839)
T ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHCC-CCCCCC-----------CCCCCCEEEEEEEEECCCCEEEEECCCCHHHHH
T ss_conf 5668988-988577467731489998628-753556-----------787552223499995699879985588558899
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEE
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001-11014532210
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTP 164 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~p 164 (392)
T Consensus 404 ~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp-~ivaink~d~~~a~--~~~v~~~l~~~~~~~e~~gg~~~ 480 (839)
T PRK05306 404 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELTEYGLVPEEWGGDTI 480 (839)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCHHHCCCCEE
T ss_conf 9986357654369999977777567789999999974998-89997404678898--89999999984986454289448
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC--CCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 23311467641144456521233203443102--5222210000110000000135544543014874245348967999
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTH--IPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEI 242 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~--~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i 242 (392)
T Consensus 481 ~v~~sa~~~~----------~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~ 550 (839)
T PRK05306 481 FVPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA 550 (839)
T ss_pred EEEEEECCCC----------CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEE
T ss_conf 9981515788----------789999999987665204479998617999987752787505899984271325998998
Q ss_pred EECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHHH-HCCCCCCEEECHHEEE
Q ss_conf 506874321254121001-2114432100136664-1124543220211773
Q gi|254780263|r 243 IGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGLL-LRGVNRADVPRGRVVC 292 (392)
Q Consensus 243 ~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l~-Lkgi~~~di~rGdvl~ 292 (392)
T Consensus 551 g~-----~~g~vr~m~~~~g~~~~~a~Ps~pv~i~G~~~~P----~aGd~~~ 593 (839)
T PRK05306 551 GT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVP----QAGDEFV 593 (839)
T ss_pred EC-----CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCC----CCCCEEE
T ss_conf 10-----2055101588999898714898777960567899----8888778