HHsearch alignment for GI: 254780263 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.53  E-value=0.0011  Score=41.86  Aligned_cols=121  Identities=21%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHHC------CCEEEEEEEEE-------ECCCEEE
Q ss_conf             9999904689887899999987644-420---01312686---869862------92063789998-------2199089
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKLR------GITIATAHVSY-------ETDKRFY   73 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~r------GiTi~~~~~~~-------~~~~~~i   73 (392)
T Consensus       212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dl  291 (412)
T PRK05703        212 VVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDL  291 (412)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf             69998888875676999999999997299817999837677779999999999719737984799999999987158997


Q ss_pred             EEEECCC--CHHH--HH---HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9984787--3024--67---7987740023314520123443321067788886318760233100233356
Q gi|254780263|r   74 SHIDCPG--HADY--VK---NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD  138 (392)
Q Consensus        74 ~iiD~PG--H~~f--~~---~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~  138 (392)
T Consensus       292 ILIDTaG~s~~d~~~~~eL~~~~~-~~~~~~~~LVlsat~~~~dl-~~i~~~f~~~~~~~lI--~TKlDEt~  359 (412)
T PRK05703        292 ILIDTAGRSQRDPRLISELKALIE-NSKPIDVYLVLSATTKYRDL-KDIVKHFSRLPLDGLI--LTKLDETS  359 (412)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCHHHH-HHHHHHHCCCCCCEEE--EEEECCCC
T ss_conf             999689889789999999999986-24887189997598998999-9999984679998799--97112899