HHsearch alignment for GI: 254780263 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.53 E-value=0.0011 Score=41.86 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=67.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHHC------CCEEEEEEEEE-------ECCCEEE
Q ss_conf 9999904689887899999987644-420---01312686---869862------92063789998-------2199089
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKLR------GITIATAHVSY-------ETDKRFY 73 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~r------GiTi~~~~~~~-------~~~~~~i 73 (392)
T Consensus 212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dl 291 (412)
T PRK05703 212 VVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDL 291 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 69998888875676999999999997299817999837677779999999999719737984799999999987158997
Q ss_pred EEEECCC--CHHH--HH---HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9984787--3024--67---7987740023314520123443321067788886318760233100233356
Q gi|254780263|r 74 SHIDCPG--HADY--VK---NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 74 ~iiD~PG--H~~f--~~---~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 292 ILIDTaG~s~~d~~~~~eL~~~~~-~~~~~~~~LVlsat~~~~dl-~~i~~~f~~~~~~~lI--~TKlDEt~ 359 (412)
T PRK05703 292 ILIDTAGRSQRDPRLISELKALIE-NSKPIDVYLVLSATTKYRDL-KDIVKHFSRLPLDGLI--LTKLDETS 359 (412)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCHHHH-HHHHHHHCCCCCCEEE--EEEECCCC
T ss_conf 999689889789999999999986-24887189997598998999-9999984679998799--97112899