HHsearch alignment for GI: 254780263 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.86 E-value=8.1e-05 Score=48.95 Aligned_cols=124 Identities=26% Similarity=0.351 Sum_probs=70.4
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHC------CCEEEEEEE---------EE-E
Q ss_conf 3882799999046898878999999876444200131--2686---869862------920637899---------98-2
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLR------GITIATAHV---------SY-E 67 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~r------GiTi~~~~~---------~~-~ 67 (392)
T Consensus 73 ~~~~-vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~ 151 (270)
T PRK06731 73 KEVQ-TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHH
T ss_conf 9981-899988898988999999999998679908999838888889999999999819953545887899999999999
Q ss_pred CCCEEEEEEECCCC----HHHHHHHHH--HHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 19908999847873----024677987--74002331452012344332--1067788886318760233100233356
Q gi|254780263|r 68 TDKRFYSHIDCPGH----ADYVKNMIT--GATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 68 ~~~~~i~iiD~PGH----~~f~~~mi~--g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 152 ~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~---f~~~~i~gvI--lTKlD~ta 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN---FKDIHIDGIV--FTKFDETA 225 (270)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCCCEEE--EECCCCCC
T ss_conf 76999999979998714699999999986063898799998687776999999998---0779998899--96535899