HHsearch alignment for GI: 254780263 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.86  E-value=8.1e-05  Score=48.95  Aligned_cols=124  Identities=26%  Similarity=0.351  Sum_probs=70.4

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHC------CCEEEEEEE---------EE-E
Q ss_conf             3882799999046898878999999876444200131--2686---869862------920637899---------98-2
Q gi|254780263|r    9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLR------GITIATAHV---------SY-E   67 (392)
Q Consensus         9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~r------GiTi~~~~~---------~~-~   67 (392)
T Consensus        73 ~~~~-vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~  151 (270)
T PRK06731         73 KEVQ-TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE  151 (270)
T ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHH
T ss_conf             9981-899988898988999999999998679908999838888889999999999819953545887899999999999


Q ss_pred             CCCEEEEEEECCCC----HHHHHHHHH--HHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             19908999847873----024677987--74002331452012344332--1067788886318760233100233356
Q gi|254780263|r   68 TDKRFYSHIDCPGH----ADYVKNMIT--GATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDAVD  138 (392)
Q Consensus        68 ~~~~~i~iiD~PGH----~~f~~~mi~--g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~v~  138 (392)
T Consensus       152 ~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~---f~~~~i~gvI--lTKlD~ta  225 (270)
T PRK06731        152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN---FKDIHIDGIV--FTKFDETA  225 (270)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCCCEEE--EECCCCCC
T ss_conf             76999999979998714699999999986063898799998687776999999998---0779998899--96535899