HHsearch alignment for GI: 254780263 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.10 E-value=0.00052 Score=43.93 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=82.0
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC---CCC-CCCCHHHH--HCCCE---EEEEEEE----------------
Q ss_conf 82799999046898878999999876444200---131-26868698--62920---6378999----------------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE---YGD-IDSAPEEK--LRGIT---IATAHVS---------------- 65 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~---~~~-~D~~~~E~--~rGiT---i~~~~~~---------------- 65 (392)
T Consensus 33 g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~~~L~~ 112 (225)
T TIGR00073 33 GLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGVPAIQINTGKECHLDAHMVAGAIHALKD 112 (225)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 97899802588611589999999984578978999755322556999986498688636886444016678658755421
Q ss_pred EECCCE-EEEEEE------CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 821990-899984------7873024677987740023314520123443321067788886318760233100233356
Q gi|254780263|r 66 YETDKR-FYSHID------CPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 66 ~~~~~~-~i~iiD------~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 113 ~~ld~~~DlL~IENVGNLvCP~~FdL---------Ge~~rVvllSVTEGdDk~-lKyP~~F~~A---d~~~-inK~DL~~ 178 (225)
T TIGR00073 113 LPLDDISDLLLIENVGNLVCPADFDL---------GEHMRVVLLSVTEGDDKV-LKYPAMFKEA---DLIL-INKVDLAE 178 (225)
T ss_pred CCCCCCCCEEEEEECCCCEECCCCCC---------CCCCEEEEEEECCCCCCC-CCCCHHHHHH---HHHH-HCHHHHHH
T ss_conf 68887146268864476100673112---------356307999865899965-4661588744---4562-14788997
Q ss_pred C-HHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 1-22211012321001110145322102331146764114445652123320344310
Q gi|254780263|r 139 D-DELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 139 ~-~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 179 ~v~~D~ek~~~d~~~------~nP~a~Ii~~S~ktg----------~Gl~~w~~~l~~ 220 (225)
T TIGR00073 179 AVGFDVEKMKADARK------INPEAEIILVSAKTG----------KGLDEWLEFLEG 220 (225)
T ss_pred HHCCCHHHHHHHHHH------HCCCEEEEEEECCCC----------CCHHHHHHHHHH
T ss_conf 707367899999986------289507998636897----------347899999998