HHsearch alignment for GI: 254780263 and conserved domain: TIGR00231

>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.23  E-value=2.6e-11  Score=89.17  Aligned_cols=153  Identities=23%  Similarity=0.294  Sum_probs=111.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHH-HH--H--CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC---CHHH
Q ss_conf             79999904689887899999987644-42--0--013126868698629206378999821990899984787---3024
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSE-EK--K--EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---HADY   84 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~-~~--~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---H~~f   84 (392)
T Consensus         4 ~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~w-~~~~~~~d~~G~~~~~~~   80 (186)
T TIGR00231         4 IKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-GAT-FQW-GYKFNLLDTPGLHRQEDY   80 (186)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-EEE-EEC-CEEEEEEECCCCHHHHHH
T ss_conf             05899734776604555445410120010232333200000011345580234-343-102-427898625771135555


Q ss_pred             -------HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEEEEE
Q ss_conf             -------67798774002331452012344332106778888631876023310023335612-2211012321001110
Q gi|254780263|r   85 -------VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDLLKE  156 (392)
Q Consensus        85 -------~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~l~~  156 (392)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T TIGR00231        81 DALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVP-ILLVGNKIDLKDEKPGYFVDLKPHLASLFAK  159 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf             445433223445444333333322211100102567787532212741-6998513365546754010000345555554


Q ss_pred             EEEEEEEE-CCCCEEEE
Q ss_conf             14532210-23311467
Q gi|254780263|r  157 HKYSDDTP-IIRGSALC  172 (392)
Q Consensus       157 ~~~~~~~p-ii~~sa~~  172 (392)
T Consensus       160 ~~---~~~~~~~~~~~~  173 (186)
T TIGR00231       160 LN---GEPHFIPLSAET  173 (186)
T ss_pred             HC---CCCCEEECCHHH
T ss_conf             23---664011110011