HHsearch alignment for GI: 254780263 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.23 E-value=2.6e-11 Score=89.17 Aligned_cols=153 Identities=23% Similarity=0.294 Sum_probs=111.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH-HH--H--CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC---CHHH
Q ss_conf 79999904689887899999987644-42--0--013126868698629206378999821990899984787---3024
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE-EK--K--EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---HADY 84 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~-~~--~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---H~~f 84 (392)
T Consensus 4 ~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~w-~~~~~~~d~~G~~~~~~~ 80 (186)
T TIGR00231 4 IKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-GAT-FQW-GYKFNLLDTPGLHRQEDY 80 (186)
T ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-EEE-EEC-CEEEEEEECCCCHHHHHH
T ss_conf 05899734776604555445410120010232333200000011345580234-343-102-427898625771135555
Q ss_pred -------HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEEEEE
Q ss_conf -------67798774002331452012344332106778888631876023310023335612-2211012321001110
Q gi|254780263|r 85 -------VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDLLKE 156 (392)
Q Consensus 85 -------~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~l~~ 156 (392)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T TIGR00231 81 DALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVP-ILLVGNKIDLKDEKPGYFVDLKPHLASLFAK 159 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf 445433223445444333333322211100102567787532212741-6998513365546754010000345555554
Q ss_pred EEEEEEEE-CCCCEEEE
Q ss_conf 14532210-23311467
Q gi|254780263|r 157 HKYSDDTP-IIRGSALC 172 (392)
Q Consensus 157 ~~~~~~~p-ii~~sa~~ 172 (392)
T Consensus 160 ~~---~~~~~~~~~~~~ 173 (186)
T TIGR00231 160 LN---GEPHFIPLSAET 173 (186)
T ss_pred HC---CCCCEEECCHHH
T ss_conf 23---664011110011