HHsearch alignment for GI: 254780263 and conserved domain: TIGR00485

>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00  E-value=0  Score=574.45  Aligned_cols=389  Identities=59%  Similarity=0.974  Sum_probs=368.5

Q ss_pred             CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf             9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r    1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI   76 (392)
Q Consensus         1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii   76 (392)
T Consensus         1 ~~~~~f~r~k~h~n~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahv   80 (394)
T TIGR00485         1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHV   80 (394)
T ss_pred             CCCHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEE
T ss_conf             96001011467033301210015505789999999875100356767765237211334515653355421467515763


Q ss_pred             ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf             47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r   77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE  156 (392)
Q Consensus        77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~  156 (392)
T Consensus        81 dCPGhadyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~  160 (394)
T TIGR00485        81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSE  160 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             18862678887641011117607999527888874112100100268765787640233224278999999999999874


Q ss_pred             EEEEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             14532-21023311467641144456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r  157 HKYSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK  235 (392)
Q Consensus       157 ~~~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~  235 (392)
T Consensus       161 ~~f~G~~~Pi~~Gsal~al~~~~--~~~~~~~~l~~~vd~~i~~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~  238 (394)
T TIGR00485       161 YDFPGDDVPIVRGSALKALEGDA--EWEEKILELMEAVDEYIPTPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVK  238 (394)
T ss_pred             CCCCCCCCCEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEE
T ss_conf             07898652256114565420036--7999999999999865067511314411455310467504634785024304476


Q ss_pred             CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCC
Q ss_conf             89679995068743212541210012114432100136664112454322021177326777630001689997105678
Q gi|254780263|r  236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEG  315 (392)
Q Consensus       236 ~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~  315 (392)
T Consensus       239 v~~~v~~~G~~~-~~~~~vtGvemf~k~l~~~~aG~n~G~llrG~~~~~~~rG~v~~~P~~~~~~~~f~~~~y~l~k~eG  317 (394)
T TIGR00485       239 VGEEVEIVGLKD-TKKTTVTGVEMFRKELDEGEAGDNVGLLLRGIKKEEIERGMVLAKPGSIKPHKKFEAEVYVLKKEEG  317 (394)
T ss_pred             ECCEEEEEEEEC-CCCEEEHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf             446479987402-4540221478888874113355420101104531210156378437632300012048999961688


Q ss_pred             CCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf             75555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r  316 GRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE  392 (392)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e  392 (392)
T Consensus       318 Grh~~f~~~yrPqfy~rt~dvtG~~~~~~~~~mv~PGd~~~~~~~li~~~a~~~G~~f~~reGG~tvGaG~v~~~~~  394 (394)
T TIGR00485       318 GRHTPFFSGYRPQFYLRTTDVTGKIELPEGVEMVMPGDNVKLTVELISPVALEEGLRFAIREGGRTVGAGVVSKILE  394 (394)
T ss_pred             CCCCHHHHCCCCEEEEEEECEEEEEEECCCCEEEECCCCEEEEEEEEEEEHHCCCCEEEEECCCCEECCHHHHHHCC
T ss_conf             73003342278505788511035775213515761587258999774120002586666413871321106776509