HHsearch alignment for GI: 254780263 and conserved domain: TIGR00750

>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.56  E-value=0.00032  Score=45.28  Aligned_cols=162  Identities=18%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--------------------CCCCHHHHHCCCEEEEE-E-EEEECC-
Q ss_conf             799999046898878999999876444200131--------------------26868698629206378-9-998219-
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--------------------IDSAPEEKLRGITIATA-H-VSYETD-   69 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--------------------~D~~~~E~~rGiTi~~~-~-~~~~~~-   69 (392)
T Consensus        39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkq--lW~dPg~FIRs~ptrG  116 (333)
T TIGR00750        39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQ--LWTDPGVFIRSMPTRG  116 (333)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCCEECCCCCCC
T ss_conf             78766468888577799999899976597689998879759755145456887754422223--3228985676776667


Q ss_pred             -------------------CEEEEEEECCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             -------------------90899984787302467798-7740023314520123443321067788886318760233
Q gi|254780263|r   70 -------------------KRFYSHIDCPGHADYVKNMI-TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVV  129 (392)
Q Consensus        70 -------------------~~~i~iiD~PGH~~f~~~mi-~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv  129 (392)
T Consensus       117 ~lGGls~at~~~~~lldA~G~DVI~vETVG----VGQSEVdi~~~aDT~v~v~~pg~GDd~Q~i----KaG~mEiaDI~-  187 (333)
T TIGR00750       117 SLGGLSKATRELVKLLDAAGYDVILVETVG----VGQSEVDIINMADTFVVVTIPGTGDDVQGI----KAGVMEIADIY-  187 (333)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEEEEC----CCHHHHHHHHHHCEEEEEECCCCCCHHHHH----HHHHHEEEEEE-
T ss_conf             525787999999999986389879998415----752487887341505898548878346666----54430232487-


Q ss_pred             EECCCCCCCCH--HH-----HHHCCC--------------CCC--EEEEE-EEEEEEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf             10023335612--22-----110123--------------210--01110-14532210233114676411444565212
Q gi|254780263|r  130 YMNKVDAVDDD--EL-----LDISEY--------------EIR--DLLKE-HKYSDDTPIIRGSALCALQGTNKELGEDS  185 (392)
Q Consensus       130 ~iNKmD~v~~~--~~-----~~~i~~--------------~i~--~~l~~-~~~~~~~pii~~sa~~g~~~~n~~~~~~~  185 (392)
T Consensus       188 VVNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~--Ppv~~tsA~~G~----------G  255 (333)
T TIGR00750       188 VVNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWR--PPVLKTSAVEGR----------G  255 (333)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC--CCEEEEECCCCC----------C
T ss_conf             8816887665899999999888888899999865333344430265511010589--963887335688----------7


Q ss_pred             CCCHHHHHHCCC
Q ss_conf             332034431025
Q gi|254780263|r  186 IHALMKAVDTHI  197 (392)
Q Consensus       186 ~~~Ll~~i~~~~  197 (392)
T Consensus       256 i~EL~daI~eH~  267 (333)
T TIGR00750       256 IDELWDAIEEHK  267 (333)
T ss_pred             CHHHHHHHHHHH
T ss_conf             167899999999