HHsearch alignment for GI: 254780263 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.32 E-value=1.1e-11 Score=91.59 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=91.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHH------
Q ss_conf 79999904689887899999987644420013126868698629206378999821-99089998478730246------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYV------ 85 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~------ 85 (392)
T Consensus 190 p~ValVGYTNAGKSTL~n~Lt~~~~~~---~d~---------lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~LP~~Li~ 257 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYA---ADQ---------LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVA 257 (351)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCC---CCC---------CEEECCCCCCEEECCCCCEEEEEECCCHHHHCCHHHHH
T ss_conf 769996678877899999985177641---034---------31353673204887999769998150056308867999
Q ss_pred --HHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf --779877400233145201234-433210677888863187--602331002333561222110123210011101453
Q gi|254780263|r 86 --KNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 86 --~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
T Consensus 258 aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~-~~~----~~-----~~~ 327 (351)
T TIGR03156 258 AFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI-ERL----EE-----GYP 327 (351)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH-HHH----HH-----CCC
T ss_conf 99999999985989999805888478999999999999769999988999967015895778-998----73-----799
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 22102331146764114445652123320344310
Q gi|254780263|r 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 328 ---~~v~ISA~~g~----------gi~~L~~~I~~ 349 (351)
T TIGR03156 328 ---EAVFVSAKTGE----------GLDLLLEAIAE 349 (351)
T ss_pred ---CEEEEECCCCC----------CHHHHHHHHHH
T ss_conf ---87999689998----------99999999995