HHsearch alignment for GI: 254780263 and conserved domain: TIGR03156

>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.32  E-value=1.1e-11  Score=91.59  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=91.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHH------
Q ss_conf             79999904689887899999987644420013126868698629206378999821-99089998478730246------
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYV------   85 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~------   85 (392)
T Consensus       190 p~ValVGYTNAGKSTL~n~Lt~~~~~~---~d~---------lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~LP~~Li~  257 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYA---ADQ---------LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVA  257 (351)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCC---CCC---------CEEECCCCCCEEECCCCCEEEEEECCCHHHHCCHHHHH
T ss_conf             769996678877899999985177641---034---------31353673204887999769998150056308867999


Q ss_pred             --HHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             --779877400233145201234-433210677888863187--602331002333561222110123210011101453
Q gi|254780263|r   86 --KNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS  160 (392)
Q Consensus        86 --~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~  160 (392)
T Consensus       258 aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~-~~~----~~-----~~~  327 (351)
T TIGR03156       258 AFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI-ERL----EE-----GYP  327 (351)
T ss_pred             HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH-HHH----HH-----CCC
T ss_conf             99999999985989999805888478999999999999769999988999967015895778-998----73-----799


Q ss_pred             EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf             22102331146764114445652123320344310
Q gi|254780263|r  161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT  195 (392)
Q Consensus       161 ~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~  195 (392)
T Consensus       328 ---~~v~ISA~~g~----------gi~~L~~~I~~  349 (351)
T TIGR03156       328 ---EAVFVSAKTGE----------GLDLLLEAIAE  349 (351)
T ss_pred             ---CEEEEECCCCC----------CHHHHHHHHHH
T ss_conf             ---87999689998----------99999999995