HHsearch alignment for GI: 254780263 and conserved domain: TIGR03598

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74  E-value=5.5e-18  Score=130.57  Aligned_cols=147  Identities=21%  Similarity=0.293  Sum_probs=99.3

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC----------
Q ss_conf             8279999904689887899999987644420013126868698629206378999821990899984787----------
Q gi|254780263|r   11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG----------   80 (392)
Q Consensus        11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG----------   80 (392)
T Consensus        17 ~~p~IaivGrpNvGKSTL~N~L~g~k~-~----a~vs-----~~pGtTr~i~~--~~~-~~~~~lvDtpGyG~~~~~~~~   83 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKK-L----ARTS-----KTPGRTQLINF--FEV-NDGFRLVDLPGYGYAKVSKEE   83 (179)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC-E----EEEC-----CCCCEEEECCE--EEE-CCCEEEEECCCHHHCCCCHHH
T ss_conf             897899986999888999999868985-5----8970-----89973660232--010-473699977760211278888


Q ss_pred             CHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf             30246779---877400233145201234433210677888863187602331002333561222110123210011101
Q gi|254780263|r   81 HADYVKNM---ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH  157 (392)
Q Consensus        81 H~~f~~~m---i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~  157 (392)
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp-~iivlNK~Dll~~~~~~~~~-~~i~~~l~~~  161 (179)
T TIGR03598        84 KEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIP-VLIVLTKADKLKKSERNKQL-KKIKKALKKD  161 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHH-HHHHHHHHCC
T ss_conf             999999999999998864302898743779989999999999975998-89999781306989999999-9999997336


Q ss_pred             EEEEEEECCCCEEEEEE
Q ss_conf             45322102331146764
Q gi|254780263|r  158 KYSDDTPIIRGSALCAL  174 (392)
Q Consensus       158 ~~~~~~pii~~sa~~g~  174 (392)
T Consensus       162 --~~~~~v~~ISA~~g~  176 (179)
T TIGR03598       162 --ADDPSVQLFSSLKKT  176 (179)
T ss_pred             --CCCCCEEEEECCCCC
T ss_conf             --688948999799983