HHsearch alignment for GI: 254780263 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=5.5e-18 Score=130.57 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=99.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC----------
Q ss_conf 8279999904689887899999987644420013126868698629206378999821990899984787----------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---------- 80 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---------- 80 (392)
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~-~----a~vs-----~~pGtTr~i~~--~~~-~~~~~lvDtpGyG~~~~~~~~ 83 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKK-L----ARTS-----KTPGRTQLINF--FEV-NDGFRLVDLPGYGYAKVSKEE 83 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-E----EEEC-----CCCCEEEECCE--EEE-CCCEEEEECCCHHHCCCCHHH
T ss_conf 897899986999888999999868985-5----8970-----89973660232--010-473699977760211278888
Q ss_pred CHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf 30246779---877400233145201234433210677888863187602331002333561222110123210011101
Q gi|254780263|r 81 HADYVKNM---ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH 157 (392)
Q Consensus 81 H~~f~~~m---i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~ 157 (392)
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp-~iivlNK~Dll~~~~~~~~~-~~i~~~l~~~ 161 (179)
T TIGR03598 84 KEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIP-VLIVLTKADKLKKSERNKQL-KKIKKALKKD 161 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHH-HHHHHHHHCC
T ss_conf 999999999999998864302898743779989999999999975998-89999781306989999999-9999997336
Q ss_pred EEEEEEECCCCEEEEEE
Q ss_conf 45322102331146764
Q gi|254780263|r 158 KYSDDTPIIRGSALCAL 174 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~ 174 (392)
T Consensus 162 --~~~~~v~~ISA~~g~ 176 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKT 176 (179)
T ss_pred --CCCCCEEEEECCCCC
T ss_conf --688948999799983